data_3FX8 # _entry.id 3FX8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3FX8 pdb_00003fx8 10.2210/pdb3fx8/pdb NDB BD0109 ? ? RCSB RCSB051153 ? ? WWPDB D_1000051153 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-03-16 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3FX8 _pdbx_database_status.recvd_initial_deposition_date 2009-01-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2ET0 ;Recognition of three-way DNA junctions by a metallo-supramolecular cylinder ('helicate') at two distinct sites ; unspecified PDB 3FX9 ;Distinct recognition of three-way DNA junctions by the two enantiomers of a metallo-supramolecular cylinder ('helicate') ; unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Boer, D.R.' 1 'Uson, I.' 2 'Coll, M.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Self-Assembly of Functionalizable Two-Component 3D DNA Arrays through the Induced Formation of DNA Three-Way-Junction Branch Points by Supramolecular Cylinders. ; Angew.Chem.Int.Ed.Engl. 49 2336 2339 2010 ? GE 1433-7851 9999 ? 20191645 10.1002/anie.200906742 1 'Molecular recognition of a three-way DNA junction by a metallosupramolecular helicate.' Angew.Chem.Int.Ed.Engl. 45 1227 1231 2006 ? GE 1433-7851 9999 ? 16463312 10.1002/anie.200503822 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Boer, D.R.' 1 ? primary 'Kerckhoffs, J.M.' 2 ? primary 'Parajo, Y.' 3 ? primary 'Pascu, M.' 4 ? primary 'Uson, I.' 5 ? primary 'Lincoln, P.' 6 ? primary 'Hannon, M.J.' 7 ? primary 'Coll, M.' 8 ? 1 'Oleksy, A.' 9 ? 1 'Blanco, A.G.' 10 ? 1 'Boer, R.' 11 ? 1 'Uson, I.' 12 ? 1 'Aymami, J.' 13 ? 1 'Rodger, A.' 14 ? 1 'Hannon, M.J.' 15 ? 1 'Coll, M.' 16 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "(5'-D(*CP*GP*TP*AP*CP*G)-3'" 1809.217 1 ? ? ? 'Synthetic hexanucleotide' 2 non-polymer syn 'FE (II) ION' 55.845 4 ? ? ? ? 3 non-polymer syn "4,4'-sulfanediylbis{N-[(1E)-pyridin-2-ylmethylidene]aniline}" 394.492 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DT)(DA)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGTACG _entity_poly.pdbx_strand_id C _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FE (II) ION' FE2 3 "4,4'-sulfanediylbis{N-[(1E)-pyridin-2-ylmethylidene]aniline}" 5PM # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DT n 1 4 DA n 1 5 DC n 1 6 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Synthetic hexanucleotide. The sequence is palindromic' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5PM non-polymer . "4,4'-sulfanediylbis{N-[(1E)-pyridin-2-ylmethylidene]aniline}" '1,1-Bis(N-(4-phenyl)-2-pyridylcarboxaldimine)thioether' 'C24 H18 N4 S' 394.492 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 FE2 non-polymer . 'FE (II) ION' ? 'Fe 2' 55.845 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C C . n A 1 2 DG 2 2 2 DG G C . n A 1 3 DT 3 3 3 DT T C . n A 1 4 DA 4 4 4 DA A C . n A 1 5 DC 5 5 5 DC C C . n A 1 6 DG 6 6 6 DG G C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE2 1 101 1 FE2 5PM C . C 2 FE2 1 102 1 FE2 5PM C . D 2 FE2 1 201 1 FE2 5PM C . E 2 FE2 1 202 1 FE2 5PM C . F 3 5PM 1 111 1 5PM 5PM C . G 3 5PM 1 211 1 5PM 5PM C . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ProDC 'data collection' . ? 1 SHELXDE phasing . ? 2 SHELXL-97 refinement . ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _cell.entry_id 3FX8 _cell.length_a 49.249 _cell.length_b 49.249 _cell.length_c 49.249 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3FX8 _symmetry.space_group_name_H-M 'P 21 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3FX8 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 5.50 _exptl_crystal.density_percent_sol 77.64 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details ;1 microliter of 10 mM cylinder, 1 microliter of 3 mM DNA, 2 microliters of crystallization buffer (10 mM Magnesium chloride, 5% v/v Isopropanol, 50 mM Tris-HCl), pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'Magnesium chloride' ? ? ? 1 2 1 Isopropanol ? ? ? 1 3 1 Tris-HCl ? ? ? 1 4 2 'Magnesium chloride' ? ? ? 1 5 2 Isopropanol ? ? ? 1 6 2 Tris-HCl ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2006-02-23 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.7366 1.0 2 1.7410 1.0 3 1.7311 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '1.7366, 1.7410, 1.7311' # _reflns.entry_id 3FX8 _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 24.63 _reflns.d_resolution_high 2.44 _reflns.number_obs 1573 _reflns.number_all 1573 _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs 0.041 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 36.1 _reflns.B_iso_Wilson_estimate 94 _reflns.pdbx_redundancy 8.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.44 _reflns_shell.d_res_low 2.58 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.447 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.2 _reflns_shell.pdbx_redundancy 5.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 228 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3FX8 _refine.ls_number_reflns_obs 1540 _refine.ls_number_reflns_all 1573 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 24.63 _refine.ls_d_res_high 2.44 _refine.ls_percent_reflns_obs 98 _refine.ls_R_factor_obs 0.187 _refine.ls_R_factor_all 0.187 _refine.ls_R_factor_R_work 0.187 _refine.ls_R_factor_R_free 0.212 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 74 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 79.4 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'BABINET (SHELXL SWAT)' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model isotropic _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 120 _refine_hist.pdbx_number_atoms_ligand 62 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 182 _refine_hist.d_res_high 2.44 _refine_hist.d_res_low 24.63 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_angle_d 0.021 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.005 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.006 ? ? ? 'X-RAY DIFFRACTION' ? s_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.031 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.44 _refine_ls_shell.d_res_low 2.55 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.358 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 165 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3FX8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3FX8 _struct.title ;Distinct recognition of three-way DNA junctions by a thioester variant of a metallo-supramolecular cylinder ('helicate') ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3FX8 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Self-assembly, DNA-based nanomaterial, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3FX8 _struct_ref.pdbx_db_accession 3FX8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code CGTACG _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3FX8 _struct_ref_seq.pdbx_strand_id C _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3FX8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 6 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4580 ? 1 MORE -68.9 ? 1 'SSA (A^2)' 2430 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_467 z-1/2,-x+3/2,-y+2 0.0000000000 0.0000000000 1.0000000000 -24.6245000000 -1.0000000000 0.0000000000 0.0000000000 73.8735000000 0.0000000000 -1.0000000000 0.0000000000 98.4980000000 3 'crystal symmetry operation' 12_675 -y+3/2,-z+2,x+1/2 0.0000000000 -1.0000000000 0.0000000000 73.8735000000 0.0000000000 0.0000000000 -1.0000000000 98.4980000000 1.0000000000 0.0000000000 0.0000000000 24.6245000000 # loop_ _struct_biol.id _struct_biol.details 1 ? 2 ;A THREE-WAY JUNCTION (CHAINS A AND C) WITH DISCONTINUOUS DNA STRANDS CAN BE GENERATED THROUGH THE FOLLOWING TRANSFORMATIONS ON CHAIN C: [Z+1/2,-X+1/2,-Y+(0 1 1)], [Y+1/2,-Z+1/2,-X+(-1 1 1)], [-X, Y+1/2,-Z+1/2+(0 1 0)], [-Z,X+1/2,-Y+1/2+(0 1 1)], [Y,Z,X+(0 2 1)] AND THE FOLLOWING TRANSFORMATIONS ON CHAIN A: [-Z,X+1/2,-Y+1/2 +(0 1 1)], [Y+1/2,-Z+1/2,-X +(-1 1 1)] ; # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? B FE2 . FE ? ? ? 1_555 F 5PM . N11 ? ? C FE2 101 C 5PM 111 1_555 ? ? ? ? ? ? ? 1.982 ? ? metalc2 metalc ? ? B FE2 . FE ? ? ? 1_555 F 5PM . N12 ? ? C FE2 101 C 5PM 111 1_555 ? ? ? ? ? ? ? 1.936 ? ? metalc3 metalc ? ? C FE2 . FE ? ? ? 1_555 F 5PM . N13 ? ? C FE2 102 C 5PM 111 1_555 ? ? ? ? ? ? ? 1.982 ? ? metalc4 metalc ? ? C FE2 . FE ? ? ? 1_555 F 5PM . N14 ? ? C FE2 102 C 5PM 111 1_555 ? ? ? ? ? ? ? 1.977 ? ? metalc5 metalc ? ? D FE2 . FE ? ? ? 1_555 G 5PM . N11 ? ? C FE2 201 C 5PM 211 1_555 ? ? ? ? ? ? ? 1.989 ? ? metalc6 metalc ? ? D FE2 . FE ? ? ? 1_555 G 5PM . N12 ? ? C FE2 201 C 5PM 211 1_555 ? ? ? ? ? ? ? 1.957 ? ? metalc7 metalc ? ? E FE2 . FE ? ? ? 1_555 G 5PM . N13 ? ? C FE2 202 C 5PM 211 1_555 ? ? ? ? ? ? ? 1.990 ? ? metalc8 metalc ? ? E FE2 . FE ? ? ? 1_555 G 5PM . N14 ? ? C FE2 202 C 5PM 211 1_555 ? ? ? ? ? ? ? 1.969 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? C DC 1 C DG 6 6_467 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? C DC 1 C DG 6 6_467 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? C DC 1 C DG 6 6_467 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? C DG 2 C DC 5 6_467 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? C DG 2 C DC 5 6_467 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? C DG 2 C DC 5 6_467 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 A DA 4 N1 ? ? C DT 3 C DA 4 6_467 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 A DA 4 N6 ? ? C DT 3 C DA 4 6_467 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N11 ? F 5PM . ? C 5PM 111 ? 1_555 FE ? B FE2 . ? C FE2 101 ? 1_555 N12 ? F 5PM . ? C 5PM 111 ? 1_555 81.7 ? 2 N13 ? F 5PM . ? C 5PM 111 ? 1_555 FE ? C FE2 . ? C FE2 102 ? 1_555 N14 ? F 5PM . ? C 5PM 111 ? 1_555 80.9 ? 3 N11 ? G 5PM . ? C 5PM 211 ? 1_555 FE ? D FE2 . ? C FE2 201 ? 1_555 N12 ? G 5PM . ? C 5PM 211 ? 1_555 81.1 ? 4 N13 ? G 5PM . ? C 5PM 211 ? 1_555 FE ? E FE2 . ? C FE2 202 ? 1_555 N14 ? G 5PM . ? C 5PM 211 ? 1_555 81.1 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software C FE2 101 ? 3 'BINDING SITE FOR RESIDUE FE2 C 101' AC2 Software C FE2 102 ? 3 'BINDING SITE FOR RESIDUE FE2 C 102' AC3 Software C FE2 201 ? 3 'BINDING SITE FOR RESIDUE FE2 C 201' AC4 Software C FE2 202 ? 3 'BINDING SITE FOR RESIDUE FE2 C 202' AC5 Software C 5PM 111 ? 8 'BINDING SITE FOR RESIDUE 5PM C 111' AC6 Software C 5PM 211 ? 10 'BINDING SITE FOR RESIDUE 5PM C 211' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 5PM F . ? 5PM C 111 . ? 8_667 ? 2 AC1 3 5PM F . ? 5PM C 111 . ? 11_376 ? 3 AC1 3 5PM F . ? 5PM C 111 . ? 1_555 ? 4 AC2 3 5PM F . ? 5PM C 111 . ? 1_555 ? 5 AC2 3 5PM F . ? 5PM C 111 . ? 8_667 ? 6 AC2 3 5PM F . ? 5PM C 111 . ? 11_376 ? 7 AC3 3 5PM G . ? 5PM C 211 . ? 1_555 ? 8 AC3 3 5PM G . ? 5PM C 211 . ? 6_467 ? 9 AC3 3 5PM G . ? 5PM C 211 . ? 12_675 ? 10 AC4 3 5PM G . ? 5PM C 211 . ? 12_675 ? 11 AC4 3 5PM G . ? 5PM C 211 . ? 1_555 ? 12 AC4 3 5PM G . ? 5PM C 211 . ? 6_467 ? 13 AC5 8 DC A 1 ? DC C 1 . ? 11_376 ? 14 AC5 8 DG A 6 ? DG C 6 . ? 6_467 ? 15 AC5 8 FE2 B . ? FE2 C 101 . ? 11_376 ? 16 AC5 8 FE2 B . ? FE2 C 101 . ? 8_667 ? 17 AC5 8 FE2 B . ? FE2 C 101 . ? 1_555 ? 18 AC5 8 FE2 C . ? FE2 C 102 . ? 11_376 ? 19 AC5 8 FE2 C . ? FE2 C 102 . ? 8_667 ? 20 AC5 8 FE2 C . ? FE2 C 102 . ? 1_555 ? 21 AC6 10 DT A 3 ? DT C 3 . ? 1_555 ? 22 AC6 10 DA A 4 ? DA C 4 . ? 1_555 ? 23 AC6 10 DA A 4 ? DA C 4 . ? 12_675 ? 24 AC6 10 DC A 5 ? DC C 5 . ? 1_555 ? 25 AC6 10 FE2 D . ? FE2 C 201 . ? 1_555 ? 26 AC6 10 FE2 D . ? FE2 C 201 . ? 12_675 ? 27 AC6 10 FE2 D . ? FE2 C 201 . ? 6_467 ? 28 AC6 10 FE2 E . ? FE2 C 202 . ? 12_675 ? 29 AC6 10 FE2 E . ? FE2 C 202 . ? 6_467 ? 30 AC6 10 FE2 E . ? FE2 C 202 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" C DG 2 ? ? "C4'" C DG 2 ? ? "C3'" C DG 2 ? ? 99.41 104.50 -5.09 0.40 N 2 1 "O4'" C DG 2 ? ? "C1'" C DG 2 ? ? N9 C DG 2 ? ? 112.61 108.30 4.31 0.30 N 3 1 "O4'" C DC 5 ? ? "C4'" C DC 5 ? ? "C3'" C DC 5 ? ? 102.03 104.50 -2.47 0.40 N 4 1 "C3'" C DC 5 ? ? "O3'" C DC 5 ? ? P C DG 6 ? ? 128.58 119.70 8.88 1.20 Y 5 1 "C3'" C DG 6 ? ? "C2'" C DG 6 ? ? "C1'" C DG 6 ? ? 97.04 102.40 -5.36 0.80 N 6 1 "O4'" C DG 6 ? ? "C1'" C DG 6 ? ? N9 C DG 6 ? ? 110.25 108.30 1.95 0.30 N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 C FE2 101 ? B FE2 . 2 1 C FE2 102 ? C FE2 . 3 1 C FE2 201 ? D FE2 . 4 1 C FE2 202 ? E FE2 . # _pdbx_entry_details.entry_id 3FX8 _pdbx_entry_details.nonpolymer_details ;LIGAND 5PM C 111 WITH TWO IRON ATOMS FE2 C 101 AND C 102 IS THE M HELICAL ENANTIOMER OF [FE2L3], WHERE L IS 4,4'-SULFANEDIYLBIS{N-[(1E)-PYRIDIN-2-YLMETHYLIDENE]ANILINE} ; _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5PM N11 N Y N 1 5PM N12 N N N 2 5PM N13 N N N 3 5PM N14 N Y N 4 5PM C1A C Y N 5 5PM C1B C Y N 6 5PM C1C C Y N 7 5PM C1D C Y N 8 5PM C1E C Y N 9 5PM C1F C N N 10 5PM C1G C Y N 11 5PM C1H C Y N 12 5PM C1I C Y N 13 5PM C1J C Y N 14 5PM C1K C Y N 15 5PM C1L C Y N 16 5PM S1M S N N 17 5PM C1N C Y N 18 5PM C1O C Y N 19 5PM C1P C Y N 20 5PM C1Q C Y N 21 5PM C1R C Y N 22 5PM C1S C Y N 23 5PM C1T C N N 24 5PM C1U C Y N 25 5PM C1V C Y N 26 5PM C1W C Y N 27 5PM C1X C Y N 28 5PM C1Y C Y N 29 5PM H1A H N N 30 5PM H1B H N N 31 5PM H1C H N N 32 5PM H1D H N N 33 5PM H1F H N N 34 5PM H1H H N N 35 5PM H1I H N N 36 5PM H1K H N N 37 5PM H1L H N N 38 5PM H1O H N N 39 5PM H1P H N N 40 5PM H1R H N N 41 5PM H1S H N N 42 5PM H1T H N N 43 5PM H1V H N N 44 5PM H1W H N N 45 5PM H1X H N N 46 5PM H1Y H N N 47 DA OP3 O N N 48 DA P P N N 49 DA OP1 O N N 50 DA OP2 O N N 51 DA "O5'" O N N 52 DA "C5'" C N N 53 DA "C4'" C N R 54 DA "O4'" O N N 55 DA "C3'" C N S 56 DA "O3'" O N N 57 DA "C2'" C N N 58 DA "C1'" C N R 59 DA N9 N Y N 60 DA C8 C Y N 61 DA N7 N Y N 62 DA C5 C Y N 63 DA C6 C Y N 64 DA N6 N N N 65 DA N1 N Y N 66 DA C2 C Y N 67 DA N3 N Y N 68 DA C4 C Y N 69 DA HOP3 H N N 70 DA HOP2 H N N 71 DA "H5'" H N N 72 DA "H5''" H N N 73 DA "H4'" H N N 74 DA "H3'" H N N 75 DA "HO3'" H N N 76 DA "H2'" H N N 77 DA "H2''" H N N 78 DA "H1'" H N N 79 DA H8 H N N 80 DA H61 H N N 81 DA H62 H N N 82 DA H2 H N N 83 DC OP3 O N N 84 DC P P N N 85 DC OP1 O N N 86 DC OP2 O N N 87 DC "O5'" O N N 88 DC "C5'" C N N 89 DC "C4'" C N R 90 DC "O4'" O N N 91 DC "C3'" C N S 92 DC "O3'" O N N 93 DC "C2'" C N N 94 DC "C1'" C N R 95 DC N1 N N N 96 DC C2 C N N 97 DC O2 O N N 98 DC N3 N N N 99 DC C4 C N N 100 DC N4 N N N 101 DC C5 C N N 102 DC C6 C N N 103 DC HOP3 H N N 104 DC HOP2 H N N 105 DC "H5'" H N N 106 DC "H5''" H N N 107 DC "H4'" H N N 108 DC "H3'" H N N 109 DC "HO3'" H N N 110 DC "H2'" H N N 111 DC "H2''" H N N 112 DC "H1'" H N N 113 DC H41 H N N 114 DC H42 H N N 115 DC H5 H N N 116 DC H6 H N N 117 DG OP3 O N N 118 DG P P N N 119 DG OP1 O N N 120 DG OP2 O N N 121 DG "O5'" O N N 122 DG "C5'" C N N 123 DG "C4'" C N R 124 DG "O4'" O N N 125 DG "C3'" C N S 126 DG "O3'" O N N 127 DG "C2'" C N N 128 DG "C1'" C N R 129 DG N9 N Y N 130 DG C8 C Y N 131 DG N7 N Y N 132 DG C5 C Y N 133 DG C6 C N N 134 DG O6 O N N 135 DG N1 N N N 136 DG C2 C N N 137 DG N2 N N N 138 DG N3 N N N 139 DG C4 C Y N 140 DG HOP3 H N N 141 DG HOP2 H N N 142 DG "H5'" H N N 143 DG "H5''" H N N 144 DG "H4'" H N N 145 DG "H3'" H N N 146 DG "HO3'" H N N 147 DG "H2'" H N N 148 DG "H2''" H N N 149 DG "H1'" H N N 150 DG H8 H N N 151 DG H1 H N N 152 DG H21 H N N 153 DG H22 H N N 154 DT OP3 O N N 155 DT P P N N 156 DT OP1 O N N 157 DT OP2 O N N 158 DT "O5'" O N N 159 DT "C5'" C N N 160 DT "C4'" C N R 161 DT "O4'" O N N 162 DT "C3'" C N S 163 DT "O3'" O N N 164 DT "C2'" C N N 165 DT "C1'" C N R 166 DT N1 N N N 167 DT C2 C N N 168 DT O2 O N N 169 DT N3 N N N 170 DT C4 C N N 171 DT O4 O N N 172 DT C5 C N N 173 DT C7 C N N 174 DT C6 C N N 175 DT HOP3 H N N 176 DT HOP2 H N N 177 DT "H5'" H N N 178 DT "H5''" H N N 179 DT "H4'" H N N 180 DT "H3'" H N N 181 DT "HO3'" H N N 182 DT "H2'" H N N 183 DT "H2''" H N N 184 DT "H1'" H N N 185 DT H3 H N N 186 DT H71 H N N 187 DT H72 H N N 188 DT H73 H N N 189 DT H6 H N N 190 FE2 FE FE N N 191 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5PM C1A N11 doub Y N 1 5PM N11 C1E sing Y N 2 5PM C1F N12 doub N N 3 5PM N12 C1G sing N N 4 5PM C1Q N13 sing N N 5 5PM N13 C1T doub N N 6 5PM N14 C1Y doub Y N 7 5PM N14 C1U sing Y N 8 5PM C1B C1A sing Y N 9 5PM C1A H1A sing N N 10 5PM C1B C1C doub Y N 11 5PM C1B H1B sing N N 12 5PM C1C C1D sing Y N 13 5PM C1C H1C sing N N 14 5PM C1D C1E doub Y N 15 5PM C1D H1D sing N N 16 5PM C1E C1F sing N N 17 5PM C1F H1F sing N N 18 5PM C1G C1L doub Y N 19 5PM C1G C1H sing Y N 20 5PM C1H C1I doub Y N 21 5PM C1H H1H sing N N 22 5PM C1I C1J sing Y N 23 5PM C1I H1I sing N N 24 5PM C1K C1J doub Y N 25 5PM C1J S1M sing N N 26 5PM C1L C1K sing Y N 27 5PM C1K H1K sing N N 28 5PM C1L H1L sing N N 29 5PM S1M C1N sing N N 30 5PM C1S C1N doub Y N 31 5PM C1N C1O sing Y N 32 5PM C1O C1P doub Y N 33 5PM C1O H1O sing N N 34 5PM C1Q C1P sing Y N 35 5PM C1P H1P sing N N 36 5PM C1R C1Q doub Y N 37 5PM C1S C1R sing Y N 38 5PM C1R H1R sing N N 39 5PM C1S H1S sing N N 40 5PM C1T C1U sing N N 41 5PM C1T H1T sing N N 42 5PM C1U C1V doub Y N 43 5PM C1V C1W sing Y N 44 5PM C1V H1V sing N N 45 5PM C1X C1W doub Y N 46 5PM C1W H1W sing N N 47 5PM C1Y C1X sing Y N 48 5PM C1X H1X sing N N 49 5PM C1Y H1Y sing N N 50 DA OP3 P sing N N 51 DA OP3 HOP3 sing N N 52 DA P OP1 doub N N 53 DA P OP2 sing N N 54 DA P "O5'" sing N N 55 DA OP2 HOP2 sing N N 56 DA "O5'" "C5'" sing N N 57 DA "C5'" "C4'" sing N N 58 DA "C5'" "H5'" sing N N 59 DA "C5'" "H5''" sing N N 60 DA "C4'" "O4'" sing N N 61 DA "C4'" "C3'" sing N N 62 DA "C4'" "H4'" sing N N 63 DA "O4'" "C1'" sing N N 64 DA "C3'" "O3'" sing N N 65 DA "C3'" "C2'" sing N N 66 DA "C3'" "H3'" sing N N 67 DA "O3'" "HO3'" sing N N 68 DA "C2'" "C1'" sing N N 69 DA "C2'" "H2'" sing N N 70 DA "C2'" "H2''" sing N N 71 DA "C1'" N9 sing N N 72 DA "C1'" "H1'" sing N N 73 DA N9 C8 sing Y N 74 DA N9 C4 sing Y N 75 DA C8 N7 doub Y N 76 DA C8 H8 sing N N 77 DA N7 C5 sing Y N 78 DA C5 C6 sing Y N 79 DA C5 C4 doub Y N 80 DA C6 N6 sing N N 81 DA C6 N1 doub Y N 82 DA N6 H61 sing N N 83 DA N6 H62 sing N N 84 DA N1 C2 sing Y N 85 DA C2 N3 doub Y N 86 DA C2 H2 sing N N 87 DA N3 C4 sing Y N 88 DC OP3 P sing N N 89 DC OP3 HOP3 sing N N 90 DC P OP1 doub N N 91 DC P OP2 sing N N 92 DC P "O5'" sing N N 93 DC OP2 HOP2 sing N N 94 DC "O5'" "C5'" sing N N 95 DC "C5'" "C4'" sing N N 96 DC "C5'" "H5'" sing N N 97 DC "C5'" "H5''" sing N N 98 DC "C4'" "O4'" sing N N 99 DC "C4'" "C3'" sing N N 100 DC "C4'" "H4'" sing N N 101 DC "O4'" "C1'" sing N N 102 DC "C3'" "O3'" sing N N 103 DC "C3'" "C2'" sing N N 104 DC "C3'" "H3'" sing N N 105 DC "O3'" "HO3'" sing N N 106 DC "C2'" "C1'" sing N N 107 DC "C2'" "H2'" sing N N 108 DC "C2'" "H2''" sing N N 109 DC "C1'" N1 sing N N 110 DC "C1'" "H1'" sing N N 111 DC N1 C2 sing N N 112 DC N1 C6 sing N N 113 DC C2 O2 doub N N 114 DC C2 N3 sing N N 115 DC N3 C4 doub N N 116 DC C4 N4 sing N N 117 DC C4 C5 sing N N 118 DC N4 H41 sing N N 119 DC N4 H42 sing N N 120 DC C5 C6 doub N N 121 DC C5 H5 sing N N 122 DC C6 H6 sing N N 123 DG OP3 P sing N N 124 DG OP3 HOP3 sing N N 125 DG P OP1 doub N N 126 DG P OP2 sing N N 127 DG P "O5'" sing N N 128 DG OP2 HOP2 sing N N 129 DG "O5'" "C5'" sing N N 130 DG "C5'" "C4'" sing N N 131 DG "C5'" "H5'" sing N N 132 DG "C5'" "H5''" sing N N 133 DG "C4'" "O4'" sing N N 134 DG "C4'" "C3'" sing N N 135 DG "C4'" "H4'" sing N N 136 DG "O4'" "C1'" sing N N 137 DG "C3'" "O3'" sing N N 138 DG "C3'" "C2'" sing N N 139 DG "C3'" "H3'" sing N N 140 DG "O3'" "HO3'" sing N N 141 DG "C2'" "C1'" sing N N 142 DG "C2'" "H2'" sing N N 143 DG "C2'" "H2''" sing N N 144 DG "C1'" N9 sing N N 145 DG "C1'" "H1'" sing N N 146 DG N9 C8 sing Y N 147 DG N9 C4 sing Y N 148 DG C8 N7 doub Y N 149 DG C8 H8 sing N N 150 DG N7 C5 sing Y N 151 DG C5 C6 sing N N 152 DG C5 C4 doub Y N 153 DG C6 O6 doub N N 154 DG C6 N1 sing N N 155 DG N1 C2 sing N N 156 DG N1 H1 sing N N 157 DG C2 N2 sing N N 158 DG C2 N3 doub N N 159 DG N2 H21 sing N N 160 DG N2 H22 sing N N 161 DG N3 C4 sing N N 162 DT OP3 P sing N N 163 DT OP3 HOP3 sing N N 164 DT P OP1 doub N N 165 DT P OP2 sing N N 166 DT P "O5'" sing N N 167 DT OP2 HOP2 sing N N 168 DT "O5'" "C5'" sing N N 169 DT "C5'" "C4'" sing N N 170 DT "C5'" "H5'" sing N N 171 DT "C5'" "H5''" sing N N 172 DT "C4'" "O4'" sing N N 173 DT "C4'" "C3'" sing N N 174 DT "C4'" "H4'" sing N N 175 DT "O4'" "C1'" sing N N 176 DT "C3'" "O3'" sing N N 177 DT "C3'" "C2'" sing N N 178 DT "C3'" "H3'" sing N N 179 DT "O3'" "HO3'" sing N N 180 DT "C2'" "C1'" sing N N 181 DT "C2'" "H2'" sing N N 182 DT "C2'" "H2''" sing N N 183 DT "C1'" N1 sing N N 184 DT "C1'" "H1'" sing N N 185 DT N1 C2 sing N N 186 DT N1 C6 sing N N 187 DT C2 O2 doub N N 188 DT C2 N3 sing N N 189 DT N3 C4 sing N N 190 DT N3 H3 sing N N 191 DT C4 O4 doub N N 192 DT C4 C5 sing N N 193 DT C5 C7 sing N N 194 DT C5 C6 doub N N 195 DT C7 H71 sing N N 196 DT C7 H72 sing N N 197 DT C7 H73 sing N N 198 DT C6 H6 sing N N 199 # _ndb_struct_conf_na.entry_id 3FX8 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 6 6_467 0.155 -0.201 0.598 -6.488 -0.020 -8.368 1 C_DC1:DG6_C C 1 ? C 6 ? 19 1 1 A DG 2 1_555 A DC 5 6_467 -0.098 -0.134 0.724 6.535 -18.819 2.276 2 C_DG2:DC5_C C 2 ? C 5 ? 19 1 1 A DT 3 1_555 A DA 4 6_467 -0.011 0.030 0.080 4.765 -16.856 -4.041 3 C_DT3:DA4_C C 3 ? C 4 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 A DG 6 6_467 A DG 2 1_555 A DC 5 6_467 -0.063 0.591 2.982 2.352 2.499 32.098 0.657 0.496 3.006 4.504 -4.239 32.277 1 CC_DC1DG2:DC5DG6_CC C 1 ? C 6 ? C 2 ? C 5 ? 1 A DG 2 1_555 A DC 5 6_467 A DT 3 1_555 A DA 4 6_467 0.372 -0.587 3.333 3.459 -1.315 32.690 -0.806 -0.050 3.374 -2.327 -6.121 32.893 2 CC_DG2DT3:DA4DC5_CC C 2 ? C 5 ? C 3 ? C 4 ? # _atom_sites.entry_id 3FX8 _atom_sites.fract_transf_matrix[1][1] 0.020305 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020305 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020305 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C FE N O P S # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DC A 1 1 ? 9.529 69.761 48.578 1.00 80.61 ? 1 DC C "O5'" 1 ATOM 2 C "C5'" . DC A 1 1 ? 9.244 70.973 47.862 1.00 88.06 ? 1 DC C "C5'" 1 ATOM 3 C "C4'" . DC A 1 1 ? 7.809 70.961 47.393 1.00 89.95 ? 1 DC C "C4'" 1 ATOM 4 O "O4'" . DC A 1 1 ? 7.561 72.000 46.415 1.00 89.28 ? 1 DC C "O4'" 1 ATOM 5 C "C3'" . DC A 1 1 ? 7.389 69.662 46.706 1.00 94.09 ? 1 DC C "C3'" 1 ATOM 6 O "O3'" . DC A 1 1 ? 6.082 69.301 47.123 1.00 99.21 ? 1 DC C "O3'" 1 ATOM 7 C "C2'" . DC A 1 1 ? 7.477 69.982 45.233 1.00 90.80 ? 1 DC C "C2'" 1 ATOM 8 C "C1'" . DC A 1 1 ? 7.030 71.435 45.217 1.00 84.74 ? 1 DC C "C1'" 1 ATOM 9 N N1 . DC A 1 1 ? 7.520 72.242 44.089 1.00 78.44 ? 1 DC C N1 1 ATOM 10 C C2 . DC A 1 1 ? 6.583 72.691 43.153 1.00 75.45 ? 1 DC C C2 1 ATOM 11 O O2 . DC A 1 1 ? 5.395 72.380 43.337 1.00 84.21 ? 1 DC C O2 1 ATOM 12 N N3 . DC A 1 1 ? 7.007 73.435 42.108 1.00 75.75 ? 1 DC C N3 1 ATOM 13 C C4 . DC A 1 1 ? 8.297 73.746 41.956 1.00 73.23 ? 1 DC C C4 1 ATOM 14 N N4 . DC A 1 1 ? 8.655 74.487 40.900 1.00 51.76 ? 1 DC C N4 1 ATOM 15 C C5 . DC A 1 1 ? 9.273 73.301 42.892 1.00 68.48 ? 1 DC C C5 1 ATOM 16 C C6 . DC A 1 1 ? 8.837 72.565 43.923 1.00 74.56 ? 1 DC C C6 1 ATOM 17 P P . DG A 1 2 ? 5.638 67.760 47.265 1.00 97.08 ? 2 DG C P 1 ATOM 18 O OP1 . DG A 1 2 ? 5.788 67.326 48.682 1.00 103.65 ? 2 DG C OP1 1 ATOM 19 O OP2 . DG A 1 2 ? 6.286 66.948 46.202 1.00 101.10 ? 2 DG C OP2 1 ATOM 20 O "O5'" . DG A 1 2 ? 4.077 67.856 46.954 1.00 89.97 ? 2 DG C "O5'" 1 ATOM 21 C "C5'" . DG A 1 2 ? 3.348 66.847 46.293 1.00 86.60 ? 2 DG C "C5'" 1 ATOM 22 C "C4'" . DG A 1 2 ? 3.153 67.094 44.835 1.00 94.54 ? 2 DG C "C4'" 1 ATOM 23 O "O4'" . DG A 1 2 ? 3.752 68.318 44.317 1.00 101.47 ? 2 DG C "O4'" 1 ATOM 24 C "C3'" . DG A 1 2 ? 3.840 66.073 43.922 1.00 104.39 ? 2 DG C "C3'" 1 ATOM 25 O "O3'" . DG A 1 2 ? 3.301 64.769 44.059 1.00 108.00 ? 2 DG C "O3'" 1 ATOM 26 C "C2'" . DG A 1 2 ? 3.578 66.718 42.581 1.00 105.42 ? 2 DG C "C2'" 1 ATOM 27 C "C1'" . DG A 1 2 ? 3.756 68.209 42.893 1.00 96.47 ? 2 DG C "C1'" 1 ATOM 28 N N9 . DG A 1 2 ? 4.991 68.705 42.296 1.00 78.58 ? 2 DG C N9 1 ATOM 29 C C8 . DG A 1 2 ? 6.292 68.389 42.601 1.00 77.81 ? 2 DG C C8 1 ATOM 30 N N7 . DG A 1 2 ? 7.170 69.022 41.864 1.00 70.92 ? 2 DG C N7 1 ATOM 31 C C5 . DG A 1 2 ? 6.404 69.812 41.012 1.00 64.60 ? 2 DG C C5 1 ATOM 32 C C6 . DG A 1 2 ? 6.784 70.718 39.988 1.00 62.35 ? 2 DG C C6 1 ATOM 33 O O6 . DG A 1 2 ? 7.911 71.045 39.584 1.00 68.35 ? 2 DG C O6 1 ATOM 34 N N1 . DG A 1 2 ? 5.682 71.303 39.377 1.00 52.15 ? 2 DG C N1 1 ATOM 35 C C2 . DG A 1 2 ? 4.376 71.041 39.717 1.00 56.99 ? 2 DG C C2 1 ATOM 36 N N2 . DG A 1 2 ? 3.444 71.706 39.012 1.00 47.82 ? 2 DG C N2 1 ATOM 37 N N3 . DG A 1 2 ? 4.007 70.202 40.666 1.00 59.46 ? 2 DG C N3 1 ATOM 38 C C4 . DG A 1 2 ? 5.063 69.624 41.270 1.00 64.36 ? 2 DG C C4 1 ATOM 39 P P . DT A 1 3 ? 1.930 64.462 43.263 1.00 102.24 ? 3 DT C P 1 ATOM 40 O OP1 . DT A 1 3 ? 1.081 65.686 43.316 1.00 103.75 ? 3 DT C OP1 1 ATOM 41 O OP2 . DT A 1 3 ? 1.381 63.159 43.714 1.00 106.07 ? 3 DT C OP2 1 ATOM 42 O "O5'" . DT A 1 3 ? 2.440 64.299 41.758 1.00 95.34 ? 3 DT C "O5'" 1 ATOM 43 C "C5'" . DT A 1 3 ? 1.523 64.142 40.690 1.00 87.19 ? 3 DT C "C5'" 1 ATOM 44 C "C4'" . DT A 1 3 ? 1.241 65.421 39.941 1.00 80.30 ? 3 DT C "C4'" 1 ATOM 45 O "O4'" . DT A 1 3 ? 2.308 66.373 40.103 1.00 81.85 ? 3 DT C "O4'" 1 ATOM 46 C "C3'" . DT A 1 3 ? 1.086 65.189 38.438 1.00 83.11 ? 3 DT C "C3'" 1 ATOM 47 O "O3'" . DT A 1 3 ? -0.292 65.337 38.067 1.00 86.71 ? 3 DT C "O3'" 1 ATOM 48 C "C2'" . DT A 1 3 ? 1.978 66.195 37.767 1.00 73.67 ? 3 DT C "C2'" 1 ATOM 49 C "C1'" . DT A 1 3 ? 2.552 67.044 38.875 1.00 72.53 ? 3 DT C "C1'" 1 ATOM 50 N N1 . DT A 1 3 ? 4.011 67.228 38.780 1.00 54.94 ? 3 DT C N1 1 ATOM 51 C C2 . DT A 1 3 ? 4.526 68.196 37.955 1.00 64.22 ? 3 DT C C2 1 ATOM 52 O O2 . DT A 1 3 ? 3.862 68.958 37.261 1.00 69.76 ? 3 DT C O2 1 ATOM 53 N N3 . DT A 1 3 ? 5.901 68.262 37.956 1.00 60.59 ? 3 DT C N3 1 ATOM 54 C C4 . DT A 1 3 ? 6.765 67.470 38.686 1.00 58.12 ? 3 DT C C4 1 ATOM 55 O O4 . DT A 1 3 ? 7.979 67.639 38.592 1.00 72.36 ? 3 DT C O4 1 ATOM 56 C C5 . DT A 1 3 ? 6.142 66.477 39.527 1.00 48.16 ? 3 DT C C5 1 ATOM 57 C C7 . DT A 1 3 ? 7.006 65.580 40.348 1.00 60.39 ? 3 DT C C7 1 ATOM 58 C C6 . DT A 1 3 ? 4.808 66.397 39.538 1.00 44.92 ? 3 DT C C6 1 ATOM 59 P P . DA A 1 4 ? -0.915 66.809 37.915 1.00 80.92 ? 4 DA C P 1 ATOM 60 O OP1 . DA A 1 4 ? -0.398 67.650 39.030 1.00 68.35 ? 4 DA C OP1 1 ATOM 61 O OP2 . DA A 1 4 ? -2.374 66.716 37.676 1.00 83.39 ? 4 DA C OP2 1 ATOM 62 O "O5'" . DA A 1 4 ? -0.266 67.335 36.549 1.00 88.73 ? 4 DA C "O5'" 1 ATOM 63 C "C5'" . DA A 1 4 ? -0.948 68.218 35.672 1.00 82.63 ? 4 DA C "C5'" 1 ATOM 64 C "C4'" . DA A 1 4 ? -0.443 68.145 34.250 1.00 73.99 ? 4 DA C "C4'" 1 ATOM 65 O "O4'" . DA A 1 4 ? 0.685 67.253 34.125 1.00 78.87 ? 4 DA C "O4'" 1 ATOM 66 C "C3'" . DA A 1 4 ? -1.478 67.612 33.261 1.00 73.69 ? 4 DA C "C3'" 1 ATOM 67 O "O3'" . DA A 1 4 ? -1.538 68.466 32.121 1.00 79.28 ? 4 DA C "O3'" 1 ATOM 68 C "C2'" . DA A 1 4 ? -1.022 66.211 32.920 1.00 74.90 ? 4 DA C "C2'" 1 ATOM 69 C "C1'" . DA A 1 4 ? 0.476 66.292 33.079 1.00 71.17 ? 4 DA C "C1'" 1 ATOM 70 N N9 . DA A 1 4 ? 1.189 65.101 33.544 1.00 70.68 ? 4 DA C N9 1 ATOM 71 C C8 . DA A 1 4 ? 1.206 64.560 34.811 1.00 67.48 ? 4 DA C C8 1 ATOM 72 N N7 . DA A 1 4 ? 1.945 63.479 34.927 1.00 63.05 ? 4 DA C N7 1 ATOM 73 C C5 . DA A 1 4 ? 2.453 63.292 33.646 1.00 67.43 ? 4 DA C C5 1 ATOM 74 C C6 . DA A 1 4 ? 3.307 62.329 33.087 1.00 69.03 ? 4 DA C C6 1 ATOM 75 N N6 . DA A 1 4 ? 3.841 61.306 33.756 1.00 81.68 ? 4 DA C N6 1 ATOM 76 N N1 . DA A 1 4 ? 3.618 62.436 31.774 1.00 71.75 ? 4 DA C N1 1 ATOM 77 C C2 . DA A 1 4 ? 3.099 63.450 31.074 1.00 68.35 ? 4 DA C C2 1 ATOM 78 N N3 . DA A 1 4 ? 2.285 64.419 31.479 1.00 72.97 ? 4 DA C N3 1 ATOM 79 C C4 . DA A 1 4 ? 1.997 64.284 32.787 1.00 73.52 ? 4 DA C C4 1 ATOM 80 P P . DC A 1 5 ? -2.699 68.193 31.041 1.00 81.27 ? 5 DC C P 1 ATOM 81 O OP1 . DC A 1 5 ? -2.915 69.385 30.180 1.00 85.90 ? 5 DC C OP1 1 ATOM 82 O OP2 . DC A 1 5 ? -3.876 67.635 31.773 1.00 90.66 ? 5 DC C OP2 1 ATOM 83 O "O5'" . DC A 1 5 ? -2.088 67.037 30.124 1.00 79.03 ? 5 DC C "O5'" 1 ATOM 84 C "C5'" . DC A 1 5 ? -0.723 67.024 29.736 1.00 72.12 ? 5 DC C "C5'" 1 ATOM 85 C "C4'" . DC A 1 5 ? -0.501 66.215 28.489 1.00 78.47 ? 5 DC C "C4'" 1 ATOM 86 O "O4'" . DC A 1 5 ? 0.121 64.947 28.838 1.00 86.82 ? 5 DC C "O4'" 1 ATOM 87 C "C3'" . DC A 1 5 ? -1.723 65.762 27.695 1.00 82.31 ? 5 DC C "C3'" 1 ATOM 88 O "O3'" . DC A 1 5 ? -1.367 65.458 26.370 1.00 84.52 ? 5 DC C "O3'" 1 ATOM 89 C "C2'" . DC A 1 5 ? -2.162 64.567 28.521 1.00 74.57 ? 5 DC C "C2'" 1 ATOM 90 C "C1'" . DC A 1 5 ? -0.815 63.874 28.657 1.00 76.00 ? 5 DC C "C1'" 1 ATOM 91 N N1 . DC A 1 5 ? -0.617 62.969 29.798 1.00 66.07 ? 5 DC C N1 1 ATOM 92 C C2 . DC A 1 5 ? 0.225 61.865 29.625 1.00 59.52 ? 5 DC C C2 1 ATOM 93 O O2 . DC A 1 5 ? 0.780 61.666 28.535 1.00 60.07 ? 5 DC C O2 1 ATOM 94 N N3 . DC A 1 5 ? 0.434 61.011 30.648 1.00 64.84 ? 5 DC C N3 1 ATOM 95 C C4 . DC A 1 5 ? -0.166 61.233 31.817 1.00 65.84 ? 5 DC C C4 1 ATOM 96 N N4 . DC A 1 5 ? 0.097 60.338 32.775 1.00 87.34 ? 5 DC C N4 1 ATOM 97 C C5 . DC A 1 5 ? -1.029 62.343 32.027 1.00 61.58 ? 5 DC C C5 1 ATOM 98 C C6 . DC A 1 5 ? -1.229 63.186 31.004 1.00 64.52 ? 5 DC C C6 1 ATOM 99 P P . DG A 1 6 ? -2.170 65.771 25.027 1.00 84.81 ? 6 DG C P 1 ATOM 100 O OP1 . DG A 1 6 ? -1.306 66.479 24.037 1.00 82.70 ? 6 DG C OP1 1 ATOM 101 O OP2 . DG A 1 6 ? -3.500 66.357 25.343 1.00 79.61 ? 6 DG C OP2 1 ATOM 102 O "O5'" . DG A 1 6 ? -2.400 64.301 24.411 1.00 87.91 ? 6 DG C "O5'" 1 ATOM 103 C "C5'" . DG A 1 6 ? -1.300 63.386 24.408 1.00 89.55 ? 6 DG C "C5'" 1 ATOM 104 C "C4'" . DG A 1 6 ? -1.750 61.963 24.217 1.00 89.60 ? 6 DG C "C4'" 1 ATOM 105 O "O4'" . DG A 1 6 ? -1.549 61.180 25.434 1.00 76.84 ? 6 DG C "O4'" 1 ATOM 106 C "C3'" . DG A 1 6 ? -3.230 61.807 23.889 1.00 90.67 ? 6 DG C "C3'" 1 ATOM 107 O "O3'" . DG A 1 6 ? -3.497 60.665 23.097 1.00 103.17 ? 6 DG C "O3'" 1 ATOM 108 C "C2'" . DG A 1 6 ? -3.836 61.698 25.275 1.00 84.10 ? 6 DG C "C2'" 1 ATOM 109 C "C1'" . DG A 1 6 ? -2.825 60.690 25.844 1.00 74.75 ? 6 DG C "C1'" 1 ATOM 110 N N9 . DG A 1 6 ? -2.877 60.572 27.290 1.00 63.75 ? 6 DG C N9 1 ATOM 111 C C8 . DG A 1 6 ? -3.545 61.295 28.239 1.00 61.33 ? 6 DG C C8 1 ATOM 112 N N7 . DG A 1 6 ? -3.327 60.866 29.455 1.00 64.19 ? 6 DG C N7 1 ATOM 113 C C5 . DG A 1 6 ? -2.459 59.791 29.299 1.00 62.14 ? 6 DG C C5 1 ATOM 114 C C6 . DG A 1 6 ? -1.847 58.903 30.213 1.00 59.37 ? 6 DG C C6 1 ATOM 115 O O6 . DG A 1 6 ? -1.929 58.852 31.445 1.00 64.94 ? 6 DG C O6 1 ATOM 116 N N1 . DG A 1 6 ? -1.042 57.969 29.576 1.00 65.29 ? 6 DG C N1 1 ATOM 117 C C2 . DG A 1 6 ? -0.829 57.871 28.227 1.00 71.52 ? 6 DG C C2 1 ATOM 118 N N2 . DG A 1 6 ? -0.016 56.900 27.790 1.00 79.13 ? 6 DG C N2 1 ATOM 119 N N3 . DG A 1 6 ? -1.390 58.689 27.359 1.00 76.56 ? 6 DG C N3 1 ATOM 120 C C4 . DG A 1 6 ? -2.175 59.601 27.969 1.00 66.32 ? 6 DG C C4 1 HETATM 121 FE FE . FE2 B 2 . ? 1.698 75.572 47.551 0.33 88.78 ? 101 FE2 C FE 1 HETATM 122 FE FE . FE2 C 2 . ? 8.216 82.089 41.033 0.33 95.00 ? 102 FE2 C FE 1 HETATM 123 FE FE . FE2 D 2 . ? 5.093 68.781 29.717 0.33 70.95 ? 201 FE2 C FE 1 HETATM 124 FE FE . FE2 E 2 . ? 11.692 62.182 36.316 0.33 92.03 ? 202 FE2 C FE 1 HETATM 125 N N11 . 5PM F 3 . ? 0.317 76.253 48.799 1.00 98.57 ? 111 5PM C N11 1 HETATM 126 N N12 . 5PM F 3 . ? 0.897 76.896 46.388 1.00 73.57 ? 111 5PM C N12 1 HETATM 127 N N13 . 5PM F 3 . ? 7.375 80.448 40.307 1.00 109.77 ? 111 5PM C N13 1 HETATM 128 N N14 . 5PM F 3 . ? 9.732 81.406 39.964 1.00 137.31 ? 111 5PM C N14 1 HETATM 129 C C1A . 5PM F 3 . ? 0.067 75.872 50.048 1.00 108.79 ? 111 5PM C C1A 1 HETATM 130 C C1B . 5PM F 3 . ? -0.941 76.441 50.831 1.00 116.43 ? 111 5PM C C1B 1 HETATM 131 C C1C . 5PM F 3 . ? -1.707 77.410 50.307 1.00 117.59 ? 111 5PM C C1C 1 HETATM 132 C C1D . 5PM F 3 . ? -1.467 77.813 49.008 1.00 109.44 ? 111 5PM C C1D 1 HETATM 133 C C1E . 5PM F 3 . ? -0.458 77.222 48.287 1.00 94.03 ? 111 5PM C C1E 1 HETATM 134 C C1F . 5PM F 3 . ? -0.082 77.548 46.926 1.00 78.64 ? 111 5PM C C1F 1 HETATM 135 C C1G . 5PM F 3 . ? 1.198 77.283 45.022 1.00 73.90 ? 111 5PM C C1G 1 HETATM 136 C C1H . 5PM F 3 . ? 0.939 76.417 43.983 1.00 70.68 ? 111 5PM C C1H 1 HETATM 137 C C1I . 5PM F 3 . ? 1.254 76.787 42.672 1.00 70.61 ? 111 5PM C C1I 1 HETATM 138 C C1J . 5PM F 3 . ? 1.798 78.016 42.394 1.00 68.71 ? 111 5PM C C1J 1 HETATM 139 C C1K . 5PM F 3 . ? 2.058 78.869 43.470 1.00 60.95 ? 111 5PM C C1K 1 HETATM 140 C C1L . 5PM F 3 . ? 1.774 78.507 44.778 1.00 65.48 ? 111 5PM C C1L 1 HETATM 141 S S1M . 5PM F 3 . ? 2.001 78.488 40.976 1.00 72.93 ? 111 5PM C S1M 1 HETATM 142 C C1N . 5PM F 3 . ? 3.416 78.998 40.812 1.00 75.86 ? 111 5PM C C1N 1 HETATM 143 C C1O . 5PM F 3 . ? 3.683 80.162 40.145 1.00 69.62 ? 111 5PM C C1O 1 HETATM 144 C C1P . 5PM F 3 . ? 4.957 80.650 39.959 1.00 76.62 ? 111 5PM C C1P 1 HETATM 145 C C1Q . 5PM F 3 . ? 6.006 79.983 40.505 1.00 94.89 ? 111 5PM C C1Q 1 HETATM 146 C C1R . 5PM F 3 . ? 5.765 78.833 41.166 1.00 92.25 ? 111 5PM C C1R 1 HETATM 147 C C1S . 5PM F 3 . ? 4.495 78.337 41.314 1.00 86.34 ? 111 5PM C C1S 1 HETATM 148 C C1T . 5PM F 3 . ? 8.118 79.746 39.534 1.00 123.24 ? 111 5PM C C1T 1 HETATM 149 C C1U . 5PM F 3 . ? 9.468 80.221 39.318 1.00 133.33 ? 111 5PM C C1U 1 HETATM 150 C C1V . 5PM F 3 . ? 10.421 79.557 38.548 1.00 139.31 ? 111 5PM C C1V 1 HETATM 151 C C1W . 5PM F 3 . ? 11.668 80.127 38.419 1.00 143.09 ? 111 5PM C C1W 1 HETATM 152 C C1X . 5PM F 3 . ? 11.912 81.321 39.079 1.00 143.77 ? 111 5PM C C1X 1 HETATM 153 C C1Y . 5PM F 3 . ? 10.945 81.934 39.833 1.00 140.76 ? 111 5PM C C1Y 1 HETATM 154 N N11 . 5PM G 3 . ? 4.186 67.990 28.134 1.00 58.70 ? 211 5PM C N11 1 HETATM 155 N N12 . 5PM G 3 . ? 4.400 67.150 30.548 1.00 62.28 ? 211 5PM C N12 1 HETATM 156 N N13 . 5PM G 3 . ? 10.551 63.528 37.235 1.00 70.60 ? 211 5PM C N13 1 HETATM 157 N N14 . 5PM G 3 . ? 13.015 62.879 37.597 1.00 83.41 ? 211 5PM C N14 1 HETATM 158 C C1A . 5PM G 3 . ? 4.109 68.475 26.896 1.00 63.71 ? 211 5PM C C1A 1 HETATM 159 C C1B . 5PM G 3 . ? 3.452 67.841 25.834 1.00 46.00 ? 211 5PM C C1B 1 HETATM 160 C C1C . 5PM G 3 . ? 2.847 66.672 26.092 1.00 48.64 ? 211 5PM C C1C 1 HETATM 161 C C1D . 5PM G 3 . ? 2.905 66.151 27.368 1.00 55.25 ? 211 5PM C C1D 1 HETATM 162 C C1E . 5PM G 3 . ? 3.588 66.815 28.360 1.00 56.63 ? 211 5PM C C1E 1 HETATM 163 C C1F . 5PM G 3 . ? 3.733 66.401 29.742 1.00 58.47 ? 211 5PM C C1F 1 HETATM 164 C C1G . 5PM G 3 . ? 4.542 66.679 31.918 1.00 65.44 ? 211 5PM C C1G 1 HETATM 165 C C1H . 5PM G 3 . ? 3.869 67.224 32.987 1.00 55.57 ? 211 5PM C C1H 1 HETATM 166 C C1I . 5PM G 3 . ? 4.038 66.696 34.276 1.00 52.23 ? 211 5PM C C1I 1 HETATM 167 C C1J . 5PM G 3 . ? 4.912 65.663 34.525 1.00 66.51 ? 211 5PM C C1J 1 HETATM 168 C C1K . 5PM G 3 . ? 5.586 65.111 33.423 1.00 58.39 ? 211 5PM C C1K 1 HETATM 169 C C1L . 5PM G 3 . ? 5.401 65.618 32.141 1.00 57.69 ? 211 5PM C C1L 1 HETATM 170 S S1M . 5PM G 3 . ? 5.165 65.105 35.908 1.00 68.59 ? 211 5PM C S1M 1 HETATM 171 C C1N . 5PM G 3 . ? 6.566 64.654 36.268 1.00 70.18 ? 211 5PM C C1N 1 HETATM 172 C C1O . 5PM G 3 . ? 6.839 63.424 36.815 1.00 70.93 ? 211 5PM C C1O 1 HETATM 173 C C1P . 5PM G 3 . ? 8.127 63.044 37.164 1.00 73.63 ? 211 5PM C C1P 1 HETATM 174 C C1Q . 5PM G 3 . ? 9.170 63.881 36.936 1.00 72.27 ? 211 5PM C C1Q 1 HETATM 175 C C1R . 5PM G 3 . ? 8.926 65.084 36.362 1.00 70.15 ? 211 5PM C C1R 1 HETATM 176 C C1S . 5PM G 3 . ? 7.641 65.461 36.053 1.00 70.27 ? 211 5PM C C1S 1 HETATM 177 C C1T . 5PM G 3 . ? 11.153 64.232 38.116 1.00 75.48 ? 211 5PM C C1T 1 HETATM 178 C C1U . 5PM G 3 . ? 12.536 63.907 38.378 1.00 84.73 ? 211 5PM C C1U 1 HETATM 179 C C1V . 5PM G 3 . ? 13.328 64.543 39.333 1.00 97.30 ? 211 5PM C C1V 1 HETATM 180 C C1W . 5PM G 3 . ? 14.638 64.138 39.486 1.00 100.25 ? 211 5PM C C1W 1 HETATM 181 C C1X . 5PM G 3 . ? 15.100 63.117 38.668 1.00 98.70 ? 211 5PM C C1X 1 HETATM 182 C C1Y . 5PM G 3 . ? 14.285 62.521 37.739 1.00 89.95 ? 211 5PM C C1Y 1 #