data_3LTR # _entry.id 3LTR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3LTR pdb_00003ltr 10.2210/pdb3ltr/pdb NDB NA0451 ? ? RCSB RCSB057719 ? ? WWPDB D_1000057719 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3IJK . unspecified PDB 3LTU . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3LTR _pdbx_database_status.recvd_initial_deposition_date 2010-02-16 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sheng, J.' 1 'Hassan, A.E.A.' 2 'Zhang, W.' 3 'Gan, J.' 4 'Huang, Z.' 5 # _citation.id primary _citation.title 'Hydrogen bond formation between the naturally modified nucleobase and phosphate backbone.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 40 _citation.page_first 8111 _citation.page_last 8118 _citation.year 2012 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22641848 _citation.pdbx_database_id_DOI 10.1093/nar/gks426 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sheng, J.' 1 ? primary 'Zhang, W.' 2 ? primary 'Hassan, A.E.' 3 ? primary 'Gan, J.' 4 ? primary 'Soares, A.S.' 5 ? primary 'Geng, S.' 6 ? primary 'Ren, Y.' 7 ? primary 'Huang, Z.' 8 ? # _cell.entry_id 3LTR _cell.length_a 42.992 _cell.length_b 42.992 _cell.length_c 23.822 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3LTR _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*(UMS)P*GP*(T5O)P*AP*CP*AP*C)-3'" 2521.577 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 water nat water 18.015 42 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DG)(UMS)(DG)(T5O)(DA)(DC)(DA)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GUGUACAC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 UMS n 1 3 DG n 1 4 T5O n 1 5 DA n 1 6 DC n 1 7 DA n 1 8 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Synthesized by solid phase synthesizer' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3LTR _struct_ref.pdbx_db_accession 3LTR _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code GUGUACAC _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3LTR _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 8 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3LTR _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 8 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 T5O 'DNA linking' n ;2'-deoxy-5-methoxyuridine 5'-(dihydrogen phosphate) ; "5-methoxy-2'-deoxyuridine-5'-phosphate" 'C10 H15 N2 O9 P' 338.208 UMS 'DNA linking' n "2'-METHYLSELENYL-2'-DEOXYURIDINE-5'-PHOSPHATE" ? 'C10 H15 N2 O8 P Se' 401.168 # _exptl.entry_id 3LTR _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.18 _exptl_crystal.density_percent_sol 43.65 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details ;10% v / v MPD, 40 mM Na Cacodylate pH 6.0,12 mM Spermine tetra-HCl, 80 mM Sodium Chloride, 20 mM Magnesium Chloride, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 99 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2009-07-15 _diffrn_detector.details Mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X12C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X12C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9795 # _reflns.entry_id 3LTR _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.30 _reflns.number_obs 5389 _reflns.number_all 5922 _reflns.percent_possible_obs 91 _reflns.pdbx_Rmerge_I_obs 0.060 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 36.7 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 21.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.30 _reflns_shell.d_res_low 1.35 _reflns_shell.percent_possible_all 58.1 _reflns_shell.Rmerge_I_obs 0.381 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.0 _reflns_shell.pdbx_redundancy 5.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 275 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3LTR _refine.ls_number_reflns_obs 5117 _refine.ls_number_reflns_all 5612 _refine.pdbx_ls_sigma_I . _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.40 _refine.ls_d_res_high 1.30 _refine.ls_percent_reflns_obs 91.05 _refine.ls_R_factor_obs 0.20260 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20164 _refine.ls_R_factor_R_free 0.22240 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 246 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.961 _refine.correlation_coeff_Fo_to_Fc_free 0.955 _refine.B_iso_mean 13.098 _refine.aniso_B[1][1] -0.25 _refine.aniso_B[2][2] -0.25 _refine.aniso_B[3][3] 0.50 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 1DNS _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.060 _refine.pdbx_overall_ESU_R_Free 0.061 _refine.overall_SU_ML 0.041 _refine.overall_SU_B 1.984 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3LTR _refine_analyze.Luzzati_coordinate_error_obs 0.060 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free 0.061 _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 163 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 42 _refine_hist.number_atoms_total 206 _refine_hist.d_res_high 1.30 _refine_hist.d_res_low 30.40 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.006 0.021 ? 182 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.251 3.000 ? 278 'X-RAY DIFFRACTION' ? r_chiral_restr 0.060 0.200 ? 32 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.020 ? 83 'X-RAY DIFFRACTION' ? r_nbd_refined 0.158 0.200 ? 59 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.276 0.200 ? 108 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.151 0.200 ? 28 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.187 0.200 ? 19 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.088 0.200 ? 15 'X-RAY DIFFRACTION' ? r_scbond_it 0.895 3.000 ? 261 'X-RAY DIFFRACTION' ? r_scangle_it 1.318 4.500 ? 278 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.30 _refine_ls_shell.d_res_low 1.332 _refine_ls_shell.number_reflns_R_work 174 _refine_ls_shell.R_factor_R_work 0.396 _refine_ls_shell.percent_reflns_obs 43.90 _refine_ls_shell.R_factor_R_free 0.423 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 13 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3LTR _struct.title '5-OMe-dU containing DNA 8mer' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3LTR _struct_keywords.pdbx_keywords DNA _struct_keywords.text ;DNA, oligonucleotide, 2'-SeMe, 5-OMe, selenium, 5-methoxy-uridine ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 1 "O3'" ? ? ? 1_555 A UMS 2 P ? ? A DG 1 A UMS 2 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale2 covale both ? A UMS 2 "O3'" ? ? ? 1_555 A DG 3 P ? ? A UMS 2 A DG 3 1_555 ? ? ? ? ? ? ? 1.599 ? ? metalc1 metalc ? ? A UMS 2 O4 ? ? ? 1_555 B MG . MG ? ? A UMS 2 A MG 11 1_555 ? ? ? ? ? ? ? 2.895 ? ? metalc2 metalc ? ? A DG 3 O6 ? ? ? 1_555 B MG . MG ? ? A DG 3 A MG 11 1_555 ? ? ? ? ? ? ? 2.927 ? ? metalc3 metalc ? ? B MG . MG ? ? ? 1_555 C HOH . O ? ? A MG 11 A HOH 120 1_555 ? ? ? ? ? ? ? 2.631 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A UMS 2 N3 ? ? ? 1_555 A DA 7 N1 ? ? A UMS 2 A DA 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A UMS 2 O4 ? ? ? 1_555 A DA 7 N6 ? ? A UMS 2 A DA 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 6 N3 ? ? A DG 3 A DC 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 6 O2 ? ? A DG 3 A DC 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 6 N4 ? ? A DG 3 A DC 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A T5O 4 N3 ? ? ? 1_555 A DA 5 N1 ? ? A T5O 4 A DA 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A T5O 4 O4 ? ? ? 1_555 A DA 5 N6 ? ? A T5O 4 A DA 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A T5O 4 N3 ? ? A DA 5 A T5O 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A T5O 4 O4 ? ? A DA 5 A T5O 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 7 N1 ? ? ? 1_555 A UMS 2 N3 ? ? A DA 7 A UMS 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 7 N6 ? ? ? 1_555 A UMS 2 O4 ? ? A DA 7 A UMS 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id MG _struct_site.pdbx_auth_seq_id 11 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'BINDING SITE FOR RESIDUE MG A 11' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 UMS A 2 ? UMS A 2 . ? 1_555 ? 2 AC1 3 DG A 3 ? DG A 3 . ? 1_555 ? 3 AC1 3 HOH C . ? HOH A 120 . ? 1_555 ? # _database_PDB_matrix.entry_id 3LTR _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3LTR _atom_sites.fract_transf_matrix[1][1] 0.023260 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023260 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.041978 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P SE # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DG A 1 1 ? 13.558 24.251 -5.233 1.00 9.93 ? 1 DG A "O5'" 1 ATOM 2 C "C5'" . DG A 1 1 ? 13.620 25.638 -4.952 1.00 8.29 ? 1 DG A "C5'" 1 ATOM 3 C "C4'" . DG A 1 1 ? 12.348 26.114 -4.270 1.00 8.09 ? 1 DG A "C4'" 1 ATOM 4 O "O4'" . DG A 1 1 ? 11.184 25.891 -5.112 1.00 7.48 ? 1 DG A "O4'" 1 ATOM 5 C "C3'" . DG A 1 1 ? 12.003 25.426 -2.952 1.00 8.05 ? 1 DG A "C3'" 1 ATOM 6 O "O3'" . DG A 1 1 ? 12.761 25.987 -1.871 1.00 8.29 ? 1 DG A "O3'" 1 ATOM 7 C "C2'" . DG A 1 1 ? 10.515 25.741 -2.857 1.00 8.91 ? 1 DG A "C2'" 1 ATOM 8 C "C1'" . DG A 1 1 ? 10.078 25.543 -4.307 1.00 8.63 ? 1 DG A "C1'" 1 ATOM 9 N N9 . DG A 1 1 ? 9.718 24.156 -4.590 1.00 8.08 ? 1 DG A N9 1 ATOM 10 C C8 . DG A 1 1 ? 10.491 23.199 -5.206 1.00 8.34 ? 1 DG A C8 1 ATOM 11 N N7 . DG A 1 1 ? 9.898 22.046 -5.313 1.00 8.34 ? 1 DG A N7 1 ATOM 12 C C5 . DG A 1 1 ? 8.661 22.244 -4.718 1.00 8.51 ? 1 DG A C5 1 ATOM 13 C C6 . DG A 1 1 ? 7.580 21.351 -4.538 1.00 9.12 ? 1 DG A C6 1 ATOM 14 O O6 . DG A 1 1 ? 7.514 20.165 -4.882 1.00 9.20 ? 1 DG A O6 1 ATOM 15 N N1 . DG A 1 1 ? 6.497 21.945 -3.889 1.00 8.43 ? 1 DG A N1 1 ATOM 16 C C2 . DG A 1 1 ? 6.468 23.260 -3.479 1.00 8.47 ? 1 DG A C2 1 ATOM 17 N N2 . DG A 1 1 ? 5.347 23.683 -2.874 1.00 9.34 ? 1 DG A N2 1 ATOM 18 N N3 . DG A 1 1 ? 7.476 24.112 -3.644 1.00 9.06 ? 1 DG A N3 1 ATOM 19 C C4 . DG A 1 1 ? 8.534 23.540 -4.269 1.00 8.41 ? 1 DG A C4 1 HETATM 20 P P . UMS A 1 2 ? 13.245 25.068 -0.653 1.00 9.37 ? 2 UMS A P 1 HETATM 21 O OP1 . UMS A 1 2 ? 14.103 25.936 0.176 1.00 9.05 ? 2 UMS A OP1 1 HETATM 22 O OP2 . UMS A 1 2 ? 13.760 23.782 -1.162 1.00 9.70 ? 2 UMS A OP2 1 HETATM 23 O "O5'" . UMS A 1 2 ? 11.895 24.737 0.142 1.00 8.81 ? 2 UMS A "O5'" 1 HETATM 24 C "C5'" . UMS A 1 2 ? 11.208 25.765 0.822 1.00 9.14 ? 2 UMS A "C5'" 1 HETATM 25 C "C4'" . UMS A 1 2 ? 9.878 25.254 1.321 1.00 9.91 ? 2 UMS A "C4'" 1 HETATM 26 O "O4'" . UMS A 1 2 ? 9.076 24.820 0.189 1.00 8.68 ? 2 UMS A "O4'" 1 HETATM 27 C "C3'" . UMS A 1 2 ? 9.961 24.055 2.255 1.00 10.92 ? 2 UMS A "C3'" 1 HETATM 28 O "O3'" . UMS A 1 2 ? 10.227 24.540 3.573 1.00 13.28 ? 2 UMS A "O3'" 1 HETATM 29 C "C2'" . UMS A 1 2 ? 8.557 23.477 2.086 1.00 10.03 ? 2 UMS A "C2'" 1 HETATM 30 SE "SE2'" . UMS A 1 2 ? 7.229 24.438 3.189 0.90 13.07 ? 2 UMS A "SE2'" 1 HETATM 31 C "C1'" . UMS A 1 2 ? 8.288 23.719 0.593 1.00 8.91 ? 2 UMS A "C1'" 1 HETATM 32 C "CA'" . UMS A 1 2 ? 5.608 23.352 3.001 0.90 11.50 ? 2 UMS A "CA'" 1 HETATM 33 N N1 . UMS A 1 2 ? 8.623 22.522 -0.255 1.00 8.59 ? 2 UMS A N1 1 HETATM 34 C C2 . UMS A 1 2 ? 7.691 21.505 -0.354 1.00 8.06 ? 2 UMS A C2 1 HETATM 35 O O2 . UMS A 1 2 ? 6.604 21.539 0.201 1.00 8.93 ? 2 UMS A O2 1 HETATM 36 N N3 . UMS A 1 2 ? 8.075 20.443 -1.141 1.00 8.00 ? 2 UMS A N3 1 HETATM 37 C C4 . UMS A 1 2 ? 9.280 20.283 -1.819 1.00 8.43 ? 2 UMS A C4 1 HETATM 38 O O4 . UMS A 1 2 ? 9.477 19.266 -2.483 1.00 9.02 ? 2 UMS A O4 1 HETATM 39 C C5 . UMS A 1 2 ? 10.209 21.380 -1.661 1.00 8.29 ? 2 UMS A C5 1 HETATM 40 C C6 . UMS A 1 2 ? 9.852 22.430 -0.898 1.00 8.32 ? 2 UMS A C6 1 ATOM 41 P P . DG A 1 3 ? 10.956 23.656 4.688 1.00 15.86 ? 3 DG A P 1 ATOM 42 O OP1 . DG A 1 3 ? 11.224 24.534 5.842 1.00 17.02 ? 3 DG A OP1 1 ATOM 43 O OP2 . DG A 1 3 ? 12.032 22.879 4.063 1.00 15.67 ? 3 DG A OP2 1 ATOM 44 O "O5'" . DG A 1 3 ? 9.768 22.657 5.074 1.00 15.02 ? 3 DG A "O5'" 1 ATOM 45 C "C5'" . DG A 1 3 ? 9.924 21.274 5.044 1.00 13.99 ? 3 DG A "C5'" 1 ATOM 46 C "C4'" . DG A 1 3 ? 8.546 20.656 5.109 1.00 13.16 ? 3 DG A "C4'" 1 ATOM 47 O "O4'" . DG A 1 3 ? 7.907 20.784 3.812 1.00 12.03 ? 3 DG A "O4'" 1 ATOM 48 C "C3'" . DG A 1 3 ? 8.587 19.171 5.406 1.00 12.80 ? 3 DG A "C3'" 1 ATOM 49 O "O3'" . DG A 1 3 ? 8.554 18.965 6.821 1.00 13.31 ? 3 DG A "O3'" 1 ATOM 50 C "C2'" . DG A 1 3 ? 7.341 18.683 4.673 1.00 11.86 ? 3 DG A "C2'" 1 ATOM 51 C "C1'" . DG A 1 3 ? 7.382 19.534 3.404 1.00 10.60 ? 3 DG A "C1'" 1 ATOM 52 N N9 . DG A 1 3 ? 8.200 18.956 2.331 1.00 10.15 ? 3 DG A N9 1 ATOM 53 C C8 . DG A 1 3 ? 9.415 19.377 1.841 1.00 9.99 ? 3 DG A C8 1 ATOM 54 N N7 . DG A 1 3 ? 9.881 18.630 0.878 1.00 9.73 ? 3 DG A N7 1 ATOM 55 C C5 . DG A 1 3 ? 8.911 17.649 0.715 1.00 9.15 ? 3 DG A C5 1 ATOM 56 C C6 . DG A 1 3 ? 8.845 16.555 -0.183 1.00 9.38 ? 3 DG A C6 1 ATOM 57 O O6 . DG A 1 3 ? 9.670 16.228 -1.038 1.00 9.37 ? 3 DG A O6 1 ATOM 58 N N1 . DG A 1 3 ? 7.686 15.796 -0.022 1.00 8.96 ? 3 DG A N1 1 ATOM 59 C C2 . DG A 1 3 ? 6.704 16.067 0.895 1.00 9.30 ? 3 DG A C2 1 ATOM 60 N N2 . DG A 1 3 ? 5.654 15.240 0.910 1.00 9.41 ? 3 DG A N2 1 ATOM 61 N N3 . DG A 1 3 ? 6.749 17.090 1.741 1.00 9.25 ? 3 DG A N3 1 ATOM 62 C C4 . DG A 1 3 ? 7.874 17.839 1.595 1.00 9.24 ? 3 DG A C4 1 HETATM 63 P P . T5O A 1 4 ? 9.241 17.686 7.495 1.00 13.62 ? 4 T5O A P 1 HETATM 64 N N1 . T5O A 1 4 ? 7.898 14.079 3.531 1.00 9.55 ? 4 T5O A N1 1 HETATM 65 C C2 . T5O A 1 4 ? 7.982 13.157 2.505 1.00 8.96 ? 4 T5O A C2 1 HETATM 66 O O2 . T5O A 1 4 ? 7.123 12.327 2.278 1.00 9.62 ? 4 T5O A O2 1 HETATM 67 N N3 . T5O A 1 4 ? 9.115 13.244 1.741 1.00 8.52 ? 4 T5O A N3 1 HETATM 68 C C4 . T5O A 1 4 ? 10.161 14.130 1.915 1.00 9.42 ? 4 T5O A C4 1 HETATM 69 O O4 . T5O A 1 4 ? 11.150 14.131 1.185 1.00 9.76 ? 4 T5O A O4 1 HETATM 70 C C5 . T5O A 1 4 ? 10.027 15.065 3.006 1.00 10.14 ? 4 T5O A C5 1 HETATM 71 O O5 . T5O A 1 4 ? 11.105 15.985 3.179 1.00 12.09 ? 4 T5O A O5 1 HETATM 72 C C6 . T5O A 1 4 ? 8.915 15.000 3.761 1.00 9.90 ? 4 T5O A C6 1 HETATM 73 C "C1'" . T5O A 1 4 ? 6.666 14.050 4.400 1.00 9.86 ? 4 T5O A "C1'" 1 HETATM 74 C "C2'" . T5O A 1 4 ? 6.709 12.982 5.490 1.00 9.62 ? 4 T5O A "C2'" 1 HETATM 75 O OP2 . T5O A 1 4 ? 10.636 17.554 7.062 1.00 13.85 ? 4 T5O A OP2 1 HETATM 76 C "C3'" . T5O A 1 4 ? 7.182 13.802 6.686 1.00 9.38 ? 4 T5O A "C3'" 1 HETATM 77 O "O3'" . T5O A 1 4 ? 6.786 13.243 7.931 1.00 9.35 ? 4 T5O A "O3'" 1 HETATM 78 C "C4'" . T5O A 1 4 ? 6.433 15.110 6.465 1.00 10.09 ? 4 T5O A "C4'" 1 HETATM 79 O "O4'" . T5O A 1 4 ? 6.486 15.310 5.030 1.00 10.71 ? 4 T5O A "O4'" 1 HETATM 80 C "C5'" . T5O A 1 4 ? 7.008 16.317 7.187 1.00 11.25 ? 4 T5O A "C5'" 1 HETATM 81 O "O5'" . T5O A 1 4 ? 8.393 16.480 6.874 1.00 12.36 ? 4 T5O A "O5'" 1 HETATM 82 C C7 . T5O A 1 4 ? 10.840 17.002 4.138 1.00 13.86 ? 4 T5O A C7 1 HETATM 83 O OP1 . T5O A 1 4 ? 8.969 17.750 8.948 1.00 15.35 ? 4 T5O A OP1 1 ATOM 84 P P . DA A 1 5 ? 7.688 12.150 8.665 1.00 11.16 ? 5 DA A P 1 ATOM 85 O OP1 . DA A 1 5 ? 7.191 12.132 10.053 1.00 12.29 ? 5 DA A OP1 1 ATOM 86 O OP2 . DA A 1 5 ? 9.114 12.406 8.399 1.00 12.20 ? 5 DA A OP2 1 ATOM 87 O "O5'" . DA A 1 5 ? 7.254 10.792 7.932 1.00 8.59 ? 5 DA A "O5'" 1 ATOM 88 C "C5'" . DA A 1 5 ? 8.163 9.752 7.634 1.00 7.29 ? 5 DA A "C5'" 1 ATOM 89 C "C4'" . DA A 1 5 ? 7.601 8.925 6.498 1.00 7.09 ? 5 DA A "C4'" 1 ATOM 90 O "O4'" . DA A 1 5 ? 7.477 9.748 5.314 1.00 7.95 ? 5 DA A "O4'" 1 ATOM 91 C "C3'" . DA A 1 5 ? 8.492 7.765 6.092 1.00 6.84 ? 5 DA A "C3'" 1 ATOM 92 O "O3'" . DA A 1 5 ? 8.154 6.623 6.854 1.00 7.21 ? 5 DA A "O3'" 1 ATOM 93 C "C2'" . DA A 1 5 ? 8.160 7.591 4.615 1.00 6.87 ? 5 DA A "C2'" 1 ATOM 94 C "C1'" . DA A 1 5 ? 7.994 9.043 4.199 1.00 6.97 ? 5 DA A "C1'" 1 ATOM 95 N N9 . DA A 1 5 ? 9.207 9.719 3.735 1.00 6.74 ? 5 DA A N9 1 ATOM 96 C C8 . DA A 1 5 ? 9.836 10.781 4.321 1.00 7.53 ? 5 DA A C8 1 ATOM 97 N N7 . DA A 1 5 ? 10.887 11.202 3.659 1.00 7.50 ? 5 DA A N7 1 ATOM 98 C C5 . DA A 1 5 ? 10.949 10.368 2.559 1.00 7.10 ? 5 DA A C5 1 ATOM 99 C C6 . DA A 1 5 ? 11.836 10.300 1.461 1.00 6.89 ? 5 DA A C6 1 ATOM 100 N N6 . DA A 1 5 ? 12.867 11.135 1.298 1.00 7.26 ? 5 DA A N6 1 ATOM 101 N N1 . DA A 1 5 ? 11.606 9.347 0.528 1.00 6.18 ? 5 DA A N1 1 ATOM 102 C C2 . DA A 1 5 ? 10.572 8.513 0.687 1.00 7.11 ? 5 DA A C2 1 ATOM 103 N N3 . DA A 1 5 ? 9.678 8.486 1.680 1.00 6.58 ? 5 DA A N3 1 ATOM 104 C C4 . DA A 1 5 ? 9.920 9.441 2.586 1.00 6.34 ? 5 DA A C4 1 ATOM 105 P P . DC A 1 6 ? 9.281 5.604 7.326 1.00 8.10 ? 6 DC A P 1 ATOM 106 O OP1 . DC A 1 6 ? 8.604 4.538 8.086 1.00 9.42 ? 6 DC A OP1 1 ATOM 107 O OP2 . DC A 1 6 ? 10.389 6.375 7.924 1.00 8.62 ? 6 DC A OP2 1 ATOM 108 O "O5'" . DC A 1 6 ? 9.811 4.995 5.956 1.00 7.74 ? 6 DC A "O5'" 1 ATOM 109 C "C5'" . DC A 1 6 ? 8.999 4.081 5.237 1.00 7.92 ? 6 DC A "C5'" 1 ATOM 110 C "C4'" . DC A 1 6 ? 9.645 3.740 3.911 1.00 8.59 ? 6 DC A "C4'" 1 ATOM 111 O "O4'" . DC A 1 6 ? 9.816 4.930 3.105 1.00 8.23 ? 6 DC A "O4'" 1 ATOM 112 C "C3'" . DC A 1 6 ? 11.055 3.193 4.035 1.00 8.87 ? 6 DC A "C3'" 1 ATOM 113 O "O3'" . DC A 1 6 ? 11.009 1.836 4.440 1.00 9.75 ? 6 DC A "O3'" 1 ATOM 114 C "C2'" . DC A 1 6 ? 11.563 3.395 2.614 1.00 8.24 ? 6 DC A "C2'" 1 ATOM 115 C "C1'" . DC A 1 6 ? 11.001 4.782 2.329 1.00 7.93 ? 6 DC A "C1'" 1 ATOM 116 N N1 . DC A 1 6 ? 11.937 5.910 2.650 1.00 6.18 ? 6 DC A N1 1 ATOM 117 C C2 . DC A 1 6 ? 12.970 6.197 1.744 1.00 6.71 ? 6 DC A C2 1 ATOM 118 O O2 . DC A 1 6 ? 13.086 5.488 0.732 1.00 7.58 ? 6 DC A O2 1 ATOM 119 N N3 . DC A 1 6 ? 13.805 7.230 2.014 1.00 6.41 ? 6 DC A N3 1 ATOM 120 C C4 . DC A 1 6 ? 13.661 7.959 3.125 1.00 6.59 ? 6 DC A C4 1 ATOM 121 N N4 . DC A 1 6 ? 14.518 8.961 3.329 1.00 7.44 ? 6 DC A N4 1 ATOM 122 C C5 . DC A 1 6 ? 12.617 7.692 4.064 1.00 6.26 ? 6 DC A C5 1 ATOM 123 C C6 . DC A 1 6 ? 11.792 6.671 3.787 1.00 5.93 ? 6 DC A C6 1 ATOM 124 P P . DA A 1 7 ? 12.230 1.179 5.234 1.00 10.31 ? 7 DA A P 1 ATOM 125 O OP1 . DA A 1 7 ? 11.753 -0.151 5.697 1.00 11.31 ? 7 DA A OP1 1 ATOM 126 O OP2 . DA A 1 7 ? 12.821 2.160 6.175 1.00 9.74 ? 7 DA A OP2 1 ATOM 127 O "O5'" . DA A 1 7 ? 13.300 0.969 4.066 1.00 9.28 ? 7 DA A "O5'" 1 ATOM 128 C "C5'" . DA A 1 7 ? 13.065 0.053 2.991 1.00 10.37 ? 7 DA A "C5'" 1 ATOM 129 C "C4'" . DA A 1 7 ? 14.242 0.091 2.033 1.00 8.76 ? 7 DA A "C4'" 1 ATOM 130 O "O4'" . DA A 1 7 ? 14.366 1.415 1.464 1.00 9.14 ? 7 DA A "O4'" 1 ATOM 131 C "C3'" . DA A 1 7 ? 15.592 -0.164 2.690 1.00 9.04 ? 7 DA A "C3'" 1 ATOM 132 O "O3'" . DA A 1 7 ? 15.817 -1.554 2.743 1.00 9.04 ? 7 DA A "O3'" 1 ATOM 133 C "C2'" . DA A 1 7 ? 16.574 0.545 1.769 1.00 8.66 ? 7 DA A "C2'" 1 ATOM 134 C "C1'" . DA A 1 7 ? 15.738 1.731 1.324 1.00 7.42 ? 7 DA A "C1'" 1 ATOM 135 N N9 . DA A 1 7 ? 15.941 2.995 2.022 1.00 6.62 ? 7 DA A N9 1 ATOM 136 C C8 . DA A 1 7 ? 15.207 3.495 3.068 1.00 6.07 ? 7 DA A C8 1 ATOM 137 N N7 . DA A 1 7 ? 15.602 4.688 3.446 1.00 6.16 ? 7 DA A N7 1 ATOM 138 C C5 . DA A 1 7 ? 16.658 4.993 2.589 1.00 5.63 ? 7 DA A C5 1 ATOM 139 C C6 . DA A 1 7 ? 17.500 6.119 2.461 1.00 6.73 ? 7 DA A C6 1 ATOM 140 N N6 . DA A 1 7 ? 17.403 7.205 3.241 1.00 5.69 ? 7 DA A N6 1 ATOM 141 N N1 . DA A 1 7 ? 18.447 6.084 1.493 1.00 6.44 ? 7 DA A N1 1 ATOM 142 C C2 . DA A 1 7 ? 18.547 5.005 0.705 1.00 6.88 ? 7 DA A C2 1 ATOM 143 N N3 . DA A 1 7 ? 17.805 3.895 0.722 1.00 6.91 ? 7 DA A N3 1 ATOM 144 C C4 . DA A 1 7 ? 16.873 3.955 1.695 1.00 6.29 ? 7 DA A C4 1 ATOM 145 P P . DC A 1 8 ? 16.747 -2.165 3.895 1.00 11.00 ? 8 DC A P 1 ATOM 146 O OP1 . DC A 1 8 ? 16.691 -3.641 3.775 1.00 11.06 ? 8 DC A OP1 1 ATOM 147 O OP2 . DC A 1 8 ? 16.377 -1.560 5.192 1.00 12.34 ? 8 DC A OP2 1 ATOM 148 O "O5'" . DC A 1 8 ? 18.211 -1.669 3.500 1.00 9.57 ? 8 DC A "O5'" 1 ATOM 149 C "C5'" . DC A 1 8 ? 18.833 -2.187 2.334 1.00 9.10 ? 8 DC A "C5'" 1 ATOM 150 C "C4'" . DC A 1 8 ? 20.183 -1.539 2.137 1.00 8.71 ? 8 DC A "C4'" 1 ATOM 151 O "O4'" . DC A 1 8 ? 19.992 -0.103 2.088 1.00 8.67 ? 8 DC A "O4'" 1 ATOM 152 C "C3'" . DC A 1 8 ? 21.194 -1.817 3.250 1.00 9.51 ? 8 DC A "C3'" 1 ATOM 153 O "O3'" . DC A 1 8 ? 22.458 -2.161 2.706 1.00 11.59 ? 8 DC A "O3'" 1 ATOM 154 C "C2'" . DC A 1 8 ? 21.291 -0.490 4.001 1.00 9.81 ? 8 DC A "C2'" 1 ATOM 155 C "C1'" . DC A 1 8 ? 20.919 0.537 2.931 1.00 7.99 ? 8 DC A "C1'" 1 ATOM 156 N N1 . DC A 1 8 ? 20.302 1.759 3.530 1.00 7.51 ? 8 DC A N1 1 ATOM 157 C C2 . DC A 1 8 ? 20.859 3.030 3.299 1.00 6.91 ? 8 DC A C2 1 ATOM 158 O O2 . DC A 1 8 ? 21.857 3.148 2.576 1.00 7.83 ? 8 DC A O2 1 ATOM 159 N N3 . DC A 1 8 ? 20.279 4.112 3.886 1.00 6.59 ? 8 DC A N3 1 ATOM 160 C C4 . DC A 1 8 ? 19.202 3.973 4.671 1.00 5.93 ? 8 DC A C4 1 ATOM 161 N N4 . DC A 1 8 ? 18.686 5.067 5.235 1.00 6.57 ? 8 DC A N4 1 ATOM 162 C C5 . DC A 1 8 ? 18.610 2.692 4.909 1.00 6.59 ? 8 DC A C5 1 ATOM 163 C C6 . DC A 1 8 ? 19.188 1.630 4.326 1.00 7.02 ? 8 DC A C6 1 HETATM 164 MG MG . MG B 2 . ? 11.820 17.566 -2.505 1.00 17.37 ? 11 MG A MG 1 HETATM 165 O O . HOH C 3 . ? 7.311 6.981 1.345 1.00 13.74 ? 101 HOH A O 1 HETATM 166 O O . HOH C 3 . ? 19.030 1.453 -0.301 1.00 16.81 ? 102 HOH A O 1 HETATM 167 O O . HOH C 3 . ? 16.755 -4.792 1.343 1.00 17.01 ? 103 HOH A O 1 HETATM 168 O O . HOH C 3 . ? 3.980 22.085 0.100 1.00 18.79 ? 104 HOH A O 1 HETATM 169 O O . HOH C 3 . ? 13.606 15.491 1.739 1.00 21.38 ? 105 HOH A O 1 HETATM 170 O O . HOH C 3 . ? 6.198 4.699 2.605 1.00 15.86 ? 106 HOH A O 1 HETATM 171 O O . HOH C 3 . ? 4.610 17.369 3.449 1.00 21.42 ? 107 HOH A O 1 HETATM 172 O O . HOH C 3 . ? 14.603 26.219 2.774 1.00 30.39 ? 108 HOH A O 1 HETATM 173 O O . HOH C 3 . ? 16.595 26.663 -0.909 1.00 19.36 ? 109 HOH A O 1 HETATM 174 O O . HOH C 3 . ? 3.074 20.319 2.132 1.00 20.39 ? 110 HOH A O 1 HETATM 175 O O . HOH C 3 . ? 13.138 1.654 9.676 1.00 50.43 ? 111 HOH A O 1 HETATM 176 O O . HOH C 3 . ? 7.215 2.129 1.849 1.00 20.77 ? 112 HOH A O 1 HETATM 177 O O . HOH C 3 . ? 3.698 17.046 6.168 1.00 23.72 ? 113 HOH A O 1 HETATM 178 O O . HOH C 3 . ? 21.298 -4.458 0.984 1.00 23.89 ? 114 HOH A O 1 HETATM 179 O O . HOH C 3 . ? 4.114 18.897 8.056 1.00 33.61 ? 115 HOH A O 1 HETATM 180 O O . HOH C 3 . ? 13.524 21.464 0.290 1.00 25.48 ? 116 HOH A O 1 HETATM 181 O O . HOH C 3 . ? 11.529 20.153 -6.303 1.00 31.98 ? 117 HOH A O 1 HETATM 182 O O . HOH C 3 . ? 24.115 0.079 1.248 1.00 27.99 ? 118 HOH A O 1 HETATM 183 O O . HOH C 3 . ? 15.317 2.312 7.035 1.00 26.80 ? 119 HOH A O 1 HETATM 184 O O . HOH C 3 . ? 12.345 19.023 -0.378 1.00 23.13 ? 120 HOH A O 1 HETATM 185 O O . HOH C 3 . ? 14.332 10.505 5.851 1.00 28.81 ? 121 HOH A O 1 HETATM 186 O O . HOH C 3 . ? 15.012 22.988 -3.391 1.00 27.37 ? 122 HOH A O 1 HETATM 187 O O . HOH C 3 . ? 6.029 3.375 7.226 1.00 25.97 ? 123 HOH A O 1 HETATM 188 O O . HOH C 3 . ? 17.373 24.783 -4.724 1.00 39.00 ? 124 HOH A O 1 HETATM 189 O O . HOH C 3 . ? 9.125 18.486 -6.042 1.00 26.65 ? 125 HOH A O 1 HETATM 190 O O . HOH C 3 . ? 10.949 12.771 6.715 1.00 39.08 ? 126 HOH A O 1 HETATM 191 O O . HOH C 3 . ? 14.695 13.166 2.623 1.00 38.94 ? 127 HOH A O 1 HETATM 192 O O . HOH C 3 . ? 11.793 9.000 7.344 1.00 33.24 ? 128 HOH A O 1 HETATM 193 O O . HOH C 3 . ? 13.018 6.547 7.509 1.00 36.14 ? 129 HOH A O 1 HETATM 194 O O . HOH C 3 . ? 16.198 7.941 6.055 1.00 25.94 ? 130 HOH A O 1 HETATM 195 O O . HOH C 3 . ? 14.890 5.901 5.775 1.00 25.35 ? 131 HOH A O 1 HETATM 196 O O . HOH C 3 . ? 12.670 19.162 6.246 1.00 30.67 ? 132 HOH A O 1 HETATM 197 O O . HOH C 3 . ? 12.908 12.739 4.593 1.00 28.26 ? 133 HOH A O 1 HETATM 198 O O . HOH C 3 . ? 11.531 27.221 5.330 1.00 27.77 ? 134 HOH A O 1 HETATM 199 O O . HOH C 3 . ? 13.817 -2.065 6.433 1.00 41.50 ? 135 HOH A O 1 HETATM 200 O O . HOH C 3 . ? 9.741 7.473 10.481 1.00 30.74 ? 136 HOH A O 1 HETATM 201 O O . HOH C 3 . ? 13.269 19.518 3.927 1.00 31.29 ? 137 HOH A O 1 HETATM 202 O O . HOH C 3 . ? 12.118 21.298 2.367 1.00 28.09 ? 138 HOH A O 1 HETATM 203 O O . HOH C 3 . ? 13.249 4.243 10.630 1.00 34.84 ? 139 HOH A O 1 HETATM 204 O O . HOH C 3 . ? 12.038 15.096 7.313 1.00 32.26 ? 140 HOH A O 1 HETATM 205 O O . HOH C 3 . ? 11.220 10.898 9.048 1.00 40.58 ? 141 HOH A O 1 HETATM 206 O O . HOH C 3 . ? 15.860 -3.262 7.737 1.00 38.94 ? 142 HOH A O 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 UMS 2 2 2 UMS UMS A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 T5O 4 4 4 T5O T5O A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DA 7 7 7 DA A A . n A 1 8 DC 8 8 8 DC C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 11 11 MG MG A . C 3 HOH 1 101 101 HOH HOH A . C 3 HOH 2 102 102 HOH HOH A . C 3 HOH 3 103 103 HOH HOH A . C 3 HOH 4 104 104 HOH HOH A . C 3 HOH 5 105 105 HOH HOH A . C 3 HOH 6 106 106 HOH HOH A . C 3 HOH 7 107 107 HOH HOH A . C 3 HOH 8 108 108 HOH HOH A . C 3 HOH 9 109 109 HOH HOH A . C 3 HOH 10 110 110 HOH HOH A . C 3 HOH 11 111 111 HOH HOH A . C 3 HOH 12 112 112 HOH HOH A . C 3 HOH 13 113 113 HOH HOH A . C 3 HOH 14 114 114 HOH HOH A . C 3 HOH 15 115 115 HOH HOH A . C 3 HOH 16 116 116 HOH HOH A . C 3 HOH 17 117 117 HOH HOH A . C 3 HOH 18 118 118 HOH HOH A . C 3 HOH 19 119 119 HOH HOH A . C 3 HOH 20 120 120 HOH HOH A . C 3 HOH 21 121 121 HOH HOH A . C 3 HOH 22 122 122 HOH HOH A . C 3 HOH 23 123 123 HOH HOH A . C 3 HOH 24 124 124 HOH HOH A . C 3 HOH 25 125 125 HOH HOH A . C 3 HOH 26 126 126 HOH HOH A . C 3 HOH 27 127 127 HOH HOH A . C 3 HOH 28 128 128 HOH HOH A . C 3 HOH 29 129 129 HOH HOH A . C 3 HOH 30 130 130 HOH HOH A . C 3 HOH 31 131 131 HOH HOH A . C 3 HOH 32 132 132 HOH HOH A . C 3 HOH 33 133 133 HOH HOH A . C 3 HOH 34 134 134 HOH HOH A . C 3 HOH 35 135 135 HOH HOH A . C 3 HOH 36 136 136 HOH HOH A . C 3 HOH 37 137 137 HOH HOH A . C 3 HOH 38 138 138 HOH HOH A . C 3 HOH 39 139 139 HOH HOH A . C 3 HOH 40 140 140 HOH HOH A . C 3 HOH 41 141 141 HOH HOH A . C 3 HOH 42 142 142 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A UMS 2 A UMS 2 ? DU ? 2 A T5O 4 A T5O 4 ? DU ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2250 ? 1 MORE -11 ? 1 'SSA (A^2)' 2810 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O4 ? A UMS 2 ? A UMS 2 ? 1_555 MG ? B MG . ? A MG 11 ? 1_555 O6 ? A DG 3 ? A DG 3 ? 1_555 70.7 ? 2 O4 ? A UMS 2 ? A UMS 2 ? 1_555 MG ? B MG . ? A MG 11 ? 1_555 O ? C HOH . ? A HOH 120 ? 1_555 80.2 ? 3 O6 ? A DG 3 ? A DG 3 ? 1_555 MG ? B MG . ? A MG 11 ? 1_555 O ? C HOH . ? A HOH 120 ? 1_555 89.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-03-09 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-06-13 4 'Structure model' 1 3 2012-09-26 5 'Structure model' 1 4 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Database references' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_initial_refinement_model 5 5 'Structure model' pdbx_struct_conn_angle 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.value' 16 5 'Structure model' '_struct_conn.pdbx_dist_value' 17 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 18 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 19 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 20 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 21 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 22 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 23 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 24 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 25 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 27 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 28 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 29 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 30 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 31 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 11.4486 _pdbx_refine_tls.origin_y 12.5770 _pdbx_refine_tls.origin_z 2.4137 _pdbx_refine_tls.T[1][1] 0.0704 _pdbx_refine_tls.T[2][2] 0.0549 _pdbx_refine_tls.T[3][3] 0.0671 _pdbx_refine_tls.T[1][2] -0.0063 _pdbx_refine_tls.T[1][3] -0.0152 _pdbx_refine_tls.T[2][3] 0.0005 _pdbx_refine_tls.L[1][1] 0.9159 _pdbx_refine_tls.L[2][2] 3.9115 _pdbx_refine_tls.L[3][3] 0.4272 _pdbx_refine_tls.L[1][2] -1.0744 _pdbx_refine_tls.L[1][3] 0.1786 _pdbx_refine_tls.L[2][3] -0.8824 _pdbx_refine_tls.S[1][1] -0.0595 _pdbx_refine_tls.S[1][2] -0.0351 _pdbx_refine_tls.S[1][3] -0.0042 _pdbx_refine_tls.S[2][1] 0.2754 _pdbx_refine_tls.S[2][2] 0.0474 _pdbx_refine_tls.S[2][3] -0.0337 _pdbx_refine_tls.S[3][1] -0.0654 _pdbx_refine_tls.S[3][2] 0.0470 _pdbx_refine_tls.S[3][3] 0.0120 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 1 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 8 _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CBASS 'data collection' . ? 1 PHASES phasing . ? 2 REFMAC refinement 5.2.0019 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 DG _pdbx_validate_rmsd_angle.auth_seq_id_1 3 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 DG _pdbx_validate_rmsd_angle.auth_seq_id_2 3 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N9 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 DG _pdbx_validate_rmsd_angle.auth_seq_id_3 3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 110.59 _pdbx_validate_rmsd_angle.angle_target_value 108.30 _pdbx_validate_rmsd_angle.angle_deviation 2.29 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 HOH O O N N 108 HOH H1 H N N 109 HOH H2 H N N 110 MG MG MG N N 111 T5O P P N N 112 T5O N1 N N N 113 T5O C2 C N N 114 T5O O2 O N N 115 T5O N3 N N N 116 T5O C4 C N N 117 T5O O4 O N N 118 T5O C5 C N N 119 T5O O5 O N N 120 T5O C6 C N N 121 T5O "C1'" C N R 122 T5O OP3 O N N 123 T5O "C2'" C N N 124 T5O OP2 O N N 125 T5O "C3'" C N S 126 T5O "O3'" O N N 127 T5O "C4'" C N R 128 T5O "O4'" O N N 129 T5O "C5'" C N N 130 T5O "O5'" O N N 131 T5O C7 C N N 132 T5O H6 H N N 133 T5O "H1'" H N N 134 T5O HOP3 H N N 135 T5O "H2'" H N N 136 T5O "H2'A" H N N 137 T5O HOP2 H N N 138 T5O "H3'" H N N 139 T5O "HO3'" H N N 140 T5O "H4'" H N N 141 T5O "H5'" H N N 142 T5O "H5'A" H N N 143 T5O HC7 H N N 144 T5O HC7A H N N 145 T5O HC7B H N N 146 T5O HN3 H N N 147 T5O OP1 O N N 148 UMS OP3 O N N 149 UMS P P N N 150 UMS OP1 O N N 151 UMS OP2 O N N 152 UMS "O5'" O N N 153 UMS "C5'" C N N 154 UMS "C4'" C N R 155 UMS "O4'" O N N 156 UMS "C3'" C N R 157 UMS "O3'" O N N 158 UMS "C2'" C N R 159 UMS "SE2'" SE N N 160 UMS "C1'" C N R 161 UMS "CA'" C N N 162 UMS N1 N N N 163 UMS C2 C N N 164 UMS O2 O N N 165 UMS N3 N N N 166 UMS C4 C N N 167 UMS O4 O N N 168 UMS C5 C N N 169 UMS C6 C N N 170 UMS HOP3 H N N 171 UMS HOP2 H N N 172 UMS "H5'" H N N 173 UMS "H5'2" H N N 174 UMS "H4'" H N N 175 UMS "H3'" H N N 176 UMS "HO3'" H N N 177 UMS "H2'" H N N 178 UMS "H1'" H N N 179 UMS "HA'" H N N 180 UMS "HA'2" H N N 181 UMS "HA'3" H N N 182 UMS H3 H N N 183 UMS H5 H N N 184 UMS H6 H N N 185 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 HOH O H1 sing N N 113 HOH O H2 sing N N 114 T5O P OP3 sing N N 115 T5O N1 C6 sing N N 116 T5O N1 "C1'" sing N N 117 T5O C2 N1 sing N N 118 T5O O2 C2 doub N N 119 T5O N3 C2 sing N N 120 T5O N3 C4 sing N N 121 T5O N3 HN3 sing N N 122 T5O C4 C5 sing N N 123 T5O O4 C4 doub N N 124 T5O C5 O5 sing N N 125 T5O C5 C6 doub N N 126 T5O O5 C7 sing N N 127 T5O C6 H6 sing N N 128 T5O "C1'" "O4'" sing N N 129 T5O "C1'" "C2'" sing N N 130 T5O "C1'" "H1'" sing N N 131 T5O OP3 HOP3 sing N N 132 T5O "C2'" "C3'" sing N N 133 T5O "C2'" "H2'" sing N N 134 T5O "C2'" "H2'A" sing N N 135 T5O OP2 P sing N N 136 T5O OP2 HOP2 sing N N 137 T5O "C3'" "O3'" sing N N 138 T5O "C3'" "H3'" sing N N 139 T5O "O3'" "HO3'" sing N N 140 T5O "C4'" "C3'" sing N N 141 T5O "C4'" "C5'" sing N N 142 T5O "C4'" "H4'" sing N N 143 T5O "O4'" "C4'" sing N N 144 T5O "C5'" "H5'" sing N N 145 T5O "C5'" "H5'A" sing N N 146 T5O "O5'" P sing N N 147 T5O "O5'" "C5'" sing N N 148 T5O C7 HC7 sing N N 149 T5O C7 HC7A sing N N 150 T5O C7 HC7B sing N N 151 T5O P OP1 doub N N 152 UMS OP3 P sing N N 153 UMS OP3 HOP3 sing N N 154 UMS P OP1 doub N N 155 UMS P OP2 sing N N 156 UMS P "O5'" sing N N 157 UMS OP2 HOP2 sing N N 158 UMS "O5'" "C5'" sing N N 159 UMS "C5'" "C4'" sing N N 160 UMS "C5'" "H5'" sing N N 161 UMS "C5'" "H5'2" sing N N 162 UMS "C4'" "O4'" sing N N 163 UMS "C4'" "C3'" sing N N 164 UMS "C4'" "H4'" sing N N 165 UMS "O4'" "C1'" sing N N 166 UMS "C3'" "O3'" sing N N 167 UMS "C3'" "C2'" sing N N 168 UMS "C3'" "H3'" sing N N 169 UMS "O3'" "HO3'" sing N N 170 UMS "C2'" "SE2'" sing N N 171 UMS "C2'" "C1'" sing N N 172 UMS "C2'" "H2'" sing N N 173 UMS "SE2'" "CA'" sing N N 174 UMS "C1'" N1 sing N N 175 UMS "C1'" "H1'" sing N N 176 UMS "CA'" "HA'" sing N N 177 UMS "CA'" "HA'2" sing N N 178 UMS "CA'" "HA'3" sing N N 179 UMS N1 C2 sing N N 180 UMS N1 C6 sing N N 181 UMS C2 O2 doub N N 182 UMS C2 N3 sing N N 183 UMS N3 C4 sing N N 184 UMS N3 H3 sing N N 185 UMS C4 O4 doub N N 186 UMS C4 C5 sing N N 187 UMS C5 C6 doub N N 188 UMS C5 H5 sing N N 189 UMS C6 H6 sing N N 190 # _ndb_struct_conf_na.entry_id 3LTR _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 8 7_555 -0.350 -0.108 -0.316 -20.419 -13.058 -1.533 1 A_DG1:DC8_A A 1 ? A 8 ? 19 1 1 A UMS 2 1_555 A DA 7 7_555 -0.034 -0.070 0.225 -9.472 -11.128 2.460 2 A_UMS2:DA7_A A 2 ? A 7 ? 20 1 1 A DG 3 1_555 A DC 6 7_555 -0.269 -0.190 0.293 -4.456 -12.941 0.248 3 A_DG3:DC6_A A 3 ? A 6 ? 19 1 1 A T5O 4 1_555 A DA 5 7_555 -0.167 -0.176 0.306 -4.517 -11.497 -5.746 4 A_T5O4:DA5_A A 4 ? A 5 ? 20 1 1 A DA 5 1_555 A T5O 4 7_555 0.167 -0.176 0.306 4.517 -11.497 -5.746 5 A_DA5:T5O4_A A 5 ? A 4 ? 20 1 1 A DC 6 1_555 A DG 3 7_555 0.269 -0.190 0.293 4.456 -12.941 0.248 6 A_DC6:DG3_A A 6 ? A 3 ? 19 1 1 A DA 7 1_555 A UMS 2 7_555 0.034 -0.070 0.225 9.472 -11.128 2.460 7 A_DA7:UMS2_A A 7 ? A 2 ? 20 1 1 A DC 8 1_555 A DG 1 7_555 0.350 -0.108 -0.316 20.419 -13.058 -1.533 8 A_DC8:DG1_A A 8 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 8 7_555 A UMS 2 1_555 A DA 7 7_555 0.449 -0.894 3.140 -2.979 12.900 31.118 -3.431 -1.210 2.529 22.797 5.264 33.754 1 AA_DG1UMS2:DA7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ? 1 A UMS 2 1_555 A DA 7 7_555 A DG 3 1_555 A DC 6 7_555 0.750 -1.468 2.963 1.314 11.804 28.972 -4.573 -1.185 2.239 22.440 -2.499 31.264 2 AA_UMS2DG3:DC6DA7_AA A 2 ? A 7 ? A 3 ? A 6 ? 1 A DG 3 1_555 A DC 6 7_555 A T5O 4 1_555 A DA 5 7_555 -0.163 -1.877 3.311 1.874 -0.170 34.214 -3.158 0.574 3.306 -0.288 -3.182 34.264 3 AA_DG3T5O4:DA5DC6_AA A 3 ? A 6 ? A 4 ? A 5 ? 1 A T5O 4 1_555 A DA 5 7_555 A DA 5 1_555 A T5O 4 7_555 0.000 -1.566 2.955 0.000 5.975 29.994 -3.986 0.000 2.601 11.402 0.000 30.570 4 AA_T5O4DA5:T5O4DA5_AA A 4 ? A 5 ? A 5 ? A 4 ? 1 A DA 5 1_555 A T5O 4 7_555 A DC 6 1_555 A DG 3 7_555 0.163 -1.877 3.311 -1.874 -0.170 34.214 -3.158 -0.574 3.306 -0.288 3.182 34.264 5 AA_DA5DC6:DG3T5O4_AA A 5 ? A 4 ? A 6 ? A 3 ? 1 A DC 6 1_555 A DG 3 7_555 A DA 7 1_555 A UMS 2 7_555 -0.750 -1.468 2.963 -1.315 11.804 28.972 -4.573 1.185 2.239 22.440 2.499 31.264 6 AA_DC6DA7:UMS2DG3_AA A 6 ? A 3 ? A 7 ? A 2 ? 1 A DA 7 1_555 A UMS 2 7_555 A DC 8 1_555 A DG 1 7_555 -0.449 -0.894 3.140 2.979 12.900 31.118 -3.431 1.210 2.529 22.797 -5.264 33.754 7 AA_DA7DC8:DG1UMS2_AA A 7 ? A 2 ? A 8 ? A 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1DNS _pdbx_initial_refinement_model.details ? #