data_3FQB # _entry.id 3FQB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3FQB pdb_00003fqb 10.2210/pdb3fqb/pdb NDB ZD0028 ? ? RCSB RCSB050909 ? ? WWPDB D_1000050909 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-02-10 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-03-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3FQB _pdbx_database_status.recvd_initial_deposition_date 2009-01-07 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3FQ5 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mandal, P.K.' 1 'Venkadesh, S.' 2 'Vinayak, N.' 3 'Gautham, N.' 4 # _citation.id primary _citation.title 'Barium-DNA interactions' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mandal, P.K.' 1 ? primary 'Venkadesh, S.' 2 ? primary 'Gautham, N.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*AP*CP*GP*CP*G)-3'" 1794.206 1 ? ? ? ? 2 polymer syn "5'-D(*CP*GP*CP*GP*TP*G)-3'" 1825.216 1 ? ? ? ? 3 non-polymer syn 'BARIUM ION' 137.327 1 ? ? ? ? 4 water nat water 18.015 39 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DA)(DC)(DG)(DC)(DG)' CACGCG A ? 2 polydeoxyribonucleotide no no '(DC)(DG)(DC)(DG)(DT)(DG)' CGCGTG B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'BARIUM ION' BA 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DA n 1 3 DC n 1 4 DG n 1 5 DC n 1 6 DG n 2 1 DC n 2 2 DG n 2 3 DC n 2 4 DG n 2 5 DT n 2 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BA non-polymer . 'BARIUM ION' ? 'Ba 2' 137.327 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DA 2 2 2 DA A A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n B 2 1 DC 1 7 7 DC C B . n B 2 2 DG 2 8 8 DG G B . n B 2 3 DC 3 9 9 DC C B . n B 2 4 DG 4 10 10 DG G B . n B 2 5 DT 5 11 11 DT T B . n B 2 6 DG 6 12 12 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 BA 1 7 1 BA BA A . D 4 HOH 1 8 2 HOH HOH A . D 4 HOH 2 9 9 HOH HOH A . D 4 HOH 3 10 10 HOH HOH A . D 4 HOH 4 11 7 HOH HOH A . D 4 HOH 5 12 12 HOH HOH A . D 4 HOH 6 13 13 HOH HOH A . D 4 HOH 7 14 14 HOH HOH A . D 4 HOH 8 15 15 HOH HOH A . D 4 HOH 9 17 17 HOH HOH A . D 4 HOH 10 18 18 HOH HOH A . D 4 HOH 11 19 19 HOH HOH A . D 4 HOH 12 20 20 HOH HOH A . D 4 HOH 13 25 25 HOH HOH A . D 4 HOH 14 28 28 HOH HOH A . D 4 HOH 15 29 29 HOH HOH A . D 4 HOH 16 30 30 HOH HOH A . D 4 HOH 17 31 31 HOH HOH A . D 4 HOH 18 34 34 HOH HOH A . D 4 HOH 19 35 35 HOH HOH A . D 4 HOH 20 37 37 HOH HOH A . D 4 HOH 21 39 39 HOH HOH A . E 4 HOH 1 1 1 HOH HOH B . E 4 HOH 2 3 3 HOH HOH B . E 4 HOH 3 4 4 HOH HOH B . E 4 HOH 4 5 5 HOH HOH B . E 4 HOH 5 6 6 HOH HOH B . E 4 HOH 6 14 8 HOH HOH B . E 4 HOH 7 15 11 HOH HOH B . E 4 HOH 8 16 16 HOH HOH B . E 4 HOH 9 21 21 HOH HOH B . E 4 HOH 10 22 22 HOH HOH B . E 4 HOH 11 23 23 HOH HOH B . E 4 HOH 12 24 24 HOH HOH B . E 4 HOH 13 26 26 HOH HOH B . E 4 HOH 14 27 27 HOH HOH B . E 4 HOH 15 32 32 HOH HOH B . E 4 HOH 16 33 33 HOH HOH B . E 4 HOH 17 36 36 HOH HOH B . E 4 HOH 18 38 38 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345dtb 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.2.0019 ? 3 AUTOMAR 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # _cell.entry_id 3FQB _cell.length_a 17.544 _cell.length_b 30.512 _cell.length_c 44.210 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3FQB _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3FQB _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.63 _exptl_crystal.density_percent_sol 24.75 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.99 _exptl_crystal_grow.pdbx_details ;50mM Sodium cacoldylate, 10mM Barium chloride, 0.5mM Spermine, 30% (v/v) Methyl pentane diol , pH 6.99, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'Sodium cacoldylate' ? ? ? 1 2 1 'Barium chloride' ? ? ? 1 3 1 Spermine ? ? ? 1 4 1 MPD ? ? ? 1 5 2 'Sodium cacoldylate' ? ? ? 1 6 2 'Barium chloride' ? ? ? 1 7 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2008-09-17 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator mirrors _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'BRUKER AXS MICROSTAR' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 3FQB _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30 _reflns.d_resolution_high 1.67 _reflns.number_obs 2791 _reflns.number_all 3037 _reflns.percent_possible_obs 91.9 _reflns.pdbx_Rmerge_I_obs 0.0882 _reflns.pdbx_Rsym_value 0.0635 _reflns.pdbx_netI_over_sigmaI 6.1 _reflns.B_iso_Wilson_estimate 26.6 _reflns.pdbx_redundancy 4.54 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.67 _reflns_shell.d_res_low 1.73 _reflns_shell.percent_possible_all 89.6 _reflns_shell.Rmerge_I_obs 0.2711 _reflns_shell.pdbx_Rsym_value 0.2330 _reflns_shell.meanI_over_sigI_obs 1.7 _reflns_shell.pdbx_redundancy 4.37 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 183 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3FQB _refine.ls_number_reflns_obs 2427 _refine.ls_number_reflns_all 2427 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 13.74 _refine.ls_d_res_high 1.67 _refine.ls_percent_reflns_obs 86.05 _refine.ls_R_factor_obs 0.21730 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21689 _refine.ls_R_factor_R_free 0.22312 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.6 _refine.ls_number_reflns_R_free 145 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.942 _refine.correlation_coeff_Fo_to_Fc_free 0.950 _refine.B_iso_mean 16.177 _refine.aniso_B[1][1] -0.05 _refine.aniso_B[2][2] 0.05 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ISOTROPIC _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.187 _refine.pdbx_overall_ESU_R_Free 0.139 _refine.overall_SU_ML 0.091 _refine.overall_SU_B 2.983 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3FQB _refine_analyze.Luzzati_coordinate_error_obs 0.224 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 249 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 39 _refine_hist.number_atoms_total 290 _refine_hist.d_res_high 1.67 _refine_hist.d_res_low 13.74 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.021 ? 280 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.247 3.000 ? 434 'X-RAY DIFFRACTION' ? r_chiral_restr 0.094 0.200 ? 49 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.011 0.020 ? 125 'X-RAY DIFFRACTION' ? r_nbd_refined 0.212 0.200 ? 112 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.274 0.200 ? 163 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.257 0.200 ? 18 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.400 0.200 ? 3 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.167 0.200 ? 20 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.214 0.200 ? 3 'X-RAY DIFFRACTION' ? r_scbond_it 1.925 3.000 ? 309 'X-RAY DIFFRACTION' ? r_scangle_it 2.583 4.500 ? 431 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.673 _refine_ls_shell.d_res_low 1.716 _refine_ls_shell.number_reflns_R_work 183 _refine_ls_shell.R_factor_R_work 0.320 _refine_ls_shell.percent_reflns_obs 94.20 _refine_ls_shell.R_factor_R_free 0.245 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 12 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 12 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3FQB _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3FQB _struct.title 'Barium interactions with Z-DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3FQB _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Z-DNA Double Helix, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 3FQB 3FQB 1 ? ? ? 2 PDB 3FQB 3FQB 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3FQB A 1 ? 6 ? 3FQB 1 ? 6 ? 1 6 2 2 3FQB B 1 ? 6 ? 3FQB 7 ? 12 ? 7 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 860 ? 1 MORE -13 ? 1 'SSA (A^2)' 2310 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 2 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 2 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id BA _struct_site.pdbx_auth_seq_id 7 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE BA A 7' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 DC A 3 ? DC A 3 . ? 1_555 ? 2 AC1 4 DG A 4 ? DG A 4 . ? 1_555 ? 3 AC1 4 DG A 6 ? DG A 6 . ? 4_455 ? 4 AC1 4 HOH D . ? HOH A 30 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.35 108.30 4.05 0.30 N 2 1 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? "C2'" A DA 2 ? ? 110.39 106.80 3.59 0.50 N 3 1 N1 A DA 2 ? ? C2 A DA 2 ? ? N3 A DA 2 ? ? 125.98 129.30 -3.32 0.50 N 4 1 "C3'" A DA 2 ? ? "O3'" A DA 2 ? ? P A DC 3 ? A 127.47 119.70 7.77 1.20 Y 5 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 102.29 108.00 -5.71 0.70 N 6 1 "O5'" A DC 5 ? ? P A DC 5 ? ? OP2 A DC 5 ? ? 118.49 110.70 7.79 1.20 N 7 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.48 108.30 3.18 0.30 N 8 1 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 110.14 108.30 1.84 0.30 N 9 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? "C2'" B DG 8 ? ? 110.30 106.80 3.50 0.50 N 10 1 "O4'" B DC 9 ? ? "C1'" B DC 9 ? ? N1 B DC 9 ? ? 110.75 108.30 2.45 0.30 N 11 1 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 101.91 108.00 -6.09 0.70 N 12 1 C4 B DG 10 ? ? C5 B DG 10 ? ? N7 B DG 10 ? ? 113.31 110.80 2.51 0.40 N 13 1 "O4'" B DT 11 ? ? "C1'" B DT 11 ? ? N1 B DT 11 ? ? 110.65 108.30 2.35 0.30 N 14 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 102.11 108.00 -5.89 0.70 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BA BA BA N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 DT OP3 O N N 109 DT P P N N 110 DT OP1 O N N 111 DT OP2 O N N 112 DT "O5'" O N N 113 DT "C5'" C N N 114 DT "C4'" C N R 115 DT "O4'" O N N 116 DT "C3'" C N S 117 DT "O3'" O N N 118 DT "C2'" C N N 119 DT "C1'" C N R 120 DT N1 N N N 121 DT C2 C N N 122 DT O2 O N N 123 DT N3 N N N 124 DT C4 C N N 125 DT O4 O N N 126 DT C5 C N N 127 DT C7 C N N 128 DT C6 C N N 129 DT HOP3 H N N 130 DT HOP2 H N N 131 DT "H5'" H N N 132 DT "H5''" H N N 133 DT "H4'" H N N 134 DT "H3'" H N N 135 DT "HO3'" H N N 136 DT "H2'" H N N 137 DT "H2''" H N N 138 DT "H1'" H N N 139 DT H3 H N N 140 DT H71 H N N 141 DT H72 H N N 142 DT H73 H N N 143 DT H6 H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # _ndb_struct_conf_na.entry_id 3FQB _ndb_struct_conf_na.feature 'z-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 6 1_555 -0.321 -0.070 -0.073 2.429 -2.584 -0.919 1 A_DC1:DG12_B A 1 ? B 12 ? 19 1 1 A DA 2 1_555 B DT 5 1_555 0.040 -0.171 0.207 -6.443 -4.232 2.687 2 A_DA2:DT11_B A 2 ? B 11 ? 20 1 1 A DC 3 1_555 B DG 4 1_555 -0.208 -0.240 0.111 2.468 1.489 2.892 3 A_DC3:DG10_B A 3 ? B 10 ? 19 1 1 A DG 4 1_555 B DC 3 1_555 0.256 -0.136 0.059 -7.852 -1.095 4.793 4 A_DG4:DC9_B A 4 ? B 9 ? 19 1 1 A DC 5 1_555 B DG 2 1_555 -0.413 -0.241 0.248 6.098 -1.651 2.263 5 A_DC5:DG8_B A 5 ? B 8 ? 19 1 1 A DG 6 1_555 B DC 1 1_555 0.348 -0.259 -0.026 -5.472 4.933 3.549 6 A_DG6:DC7_B A 6 ? B 7 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 6 1_555 A DA 2 1_555 B DT 5 1_555 -0.083 5.449 3.710 -1.954 -2.901 -11.556 -20.931 -3.750 4.844 13.995 -9.428 -12.072 1 AA_DC1DA2:DT11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A DA 2 1_555 B DT 5 1_555 A DC 3 1_555 B DG 4 1_555 0.202 -0.888 3.181 0.922 -3.372 -50.802 1.259 0.296 3.116 3.925 1.073 -50.914 2 AA_DA2DC3:DG10DT11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DC 3 1_555 B DG 4 1_555 A DG 4 1_555 B DC 3 1_555 0.044 5.269 3.728 -0.869 -3.318 -7.276 -23.259 -3.429 5.549 24.439 -6.399 -8.043 3 AA_DC3DG4:DC9DG10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DG 4 1_555 B DC 3 1_555 A DC 5 1_555 B DG 2 1_555 -0.079 -0.935 3.079 -1.185 -3.691 -52.741 1.272 -0.160 3.010 4.148 -1.332 -52.873 4 AA_DG4DC5:DG8DC9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A DC 5 1_555 B DG 2 1_555 A DG 6 1_555 B DC 1 1_555 0.066 5.264 3.764 3.210 -2.889 -4.731 -26.499 23.493 5.121 28.368 31.522 -6.405 5 AA_DC5DG6:DC7DG8_BB A 5 ? B 8 ? A 6 ? B 7 ? # _atom_sites.entry_id 3FQB _atom_sites.fract_transf_matrix[1][1] 0.057000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.032774 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022619 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BA C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DC A 1 1 ? -1.635 3.050 -15.204 1.00 13.55 ? 1 DC A "O5'" 1 ATOM 2 C "C5'" . DC A 1 1 ? -1.174 3.899 -14.139 1.00 12.12 ? 1 DC A "C5'" 1 ATOM 3 C "C4'" . DC A 1 1 ? 0.334 3.635 -13.884 1.00 14.30 ? 1 DC A "C4'" 1 ATOM 4 O "O4'" . DC A 1 1 ? 0.527 2.333 -13.285 1.00 11.75 ? 1 DC A "O4'" 1 ATOM 5 C "C3'" . DC A 1 1 ? 1.330 3.736 -15.057 1.00 12.80 ? 1 DC A "C3'" 1 ATOM 6 O "O3'" . DC A 1 1 ? 2.593 4.239 -14.604 1.00 13.26 ? 1 DC A "O3'" 1 ATOM 7 C "C2'" . DC A 1 1 ? 1.456 2.306 -15.520 1.00 12.74 ? 1 DC A "C2'" 1 ATOM 8 C "C1'" . DC A 1 1 ? 1.454 1.626 -14.139 1.00 14.92 ? 1 DC A "C1'" 1 ATOM 9 N N1 . DC A 1 1 ? 1.110 0.208 -14.282 1.00 11.54 ? 1 DC A N1 1 ATOM 10 C C2 . DC A 1 1 ? 2.142 -0.700 -14.505 1.00 9.79 ? 1 DC A C2 1 ATOM 11 O O2 . DC A 1 1 ? 3.281 -0.263 -14.605 1.00 9.66 ? 1 DC A O2 1 ATOM 12 N N3 . DC A 1 1 ? 1.807 -2.005 -14.644 1.00 11.27 ? 1 DC A N3 1 ATOM 13 C C4 . DC A 1 1 ? 0.537 -2.409 -14.565 1.00 10.63 ? 1 DC A C4 1 ATOM 14 N N4 . DC A 1 1 ? 0.271 -3.694 -14.707 1.00 13.18 ? 1 DC A N4 1 ATOM 15 C C5 . DC A 1 1 ? -0.532 -1.512 -14.333 1.00 13.49 ? 1 DC A C5 1 ATOM 16 C C6 . DC A 1 1 ? -0.187 -0.224 -14.185 1.00 9.81 ? 1 DC A C6 1 ATOM 17 P P . DA A 1 2 ? 2.993 5.776 -14.671 1.00 13.98 ? 2 DA A P 1 ATOM 18 O OP1 . DA A 1 2 ? 2.339 6.382 -15.830 1.00 16.22 ? 2 DA A OP1 1 ATOM 19 O OP2 . DA A 1 2 ? 4.425 5.897 -14.566 1.00 18.57 ? 2 DA A OP2 1 ATOM 20 O "O5'" . DA A 1 2 ? 2.367 6.429 -13.333 1.00 14.23 ? 2 DA A "O5'" 1 ATOM 21 C "C5'" . DA A 1 2 ? 2.615 5.909 -12.025 1.00 15.53 ? 2 DA A "C5'" 1 ATOM 22 C "C4'" . DA A 1 2 ? 1.687 6.621 -11.078 1.00 14.86 ? 2 DA A "C4'" 1 ATOM 23 O "O4'" . DA A 1 2 ? 0.335 6.178 -11.366 1.00 14.85 ? 2 DA A "O4'" 1 ATOM 24 C "C3'" . DA A 1 2 ? 1.992 6.328 -9.594 1.00 14.58 ? 2 DA A "C3'" 1 ATOM 25 O "O3'" . DA A 1 2 ? 2.642 7.465 -8.934 1.00 16.78 ? 2 DA A "O3'" 1 ATOM 26 C "C2'" . DA A 1 2 ? 0.643 6.096 -8.962 1.00 13.34 ? 2 DA A "C2'" 1 ATOM 27 C "C1'" . DA A 1 2 ? -0.316 5.885 -10.140 1.00 14.65 ? 2 DA A "C1'" 1 ATOM 28 N N9 . DA A 1 2 ? -0.863 4.542 -10.218 1.00 14.15 ? 2 DA A N9 1 ATOM 29 C C8 . DA A 1 2 ? -2.165 4.225 -10.270 1.00 14.55 ? 2 DA A C8 1 ATOM 30 N N7 . DA A 1 2 ? -2.407 2.951 -10.352 1.00 15.85 ? 2 DA A N7 1 ATOM 31 C C5 . DA A 1 2 ? -1.153 2.386 -10.377 1.00 14.26 ? 2 DA A C5 1 ATOM 32 C C6 . DA A 1 2 ? -0.710 1.050 -10.460 1.00 13.00 ? 2 DA A C6 1 ATOM 33 N N6 . DA A 1 2 ? -1.536 -0.010 -10.564 1.00 15.45 ? 2 DA A N6 1 ATOM 34 N N1 . DA A 1 2 ? 0.617 0.826 -10.489 1.00 14.58 ? 2 DA A N1 1 ATOM 35 C C2 . DA A 1 2 ? 1.478 1.846 -10.385 1.00 12.94 ? 2 DA A C2 1 ATOM 36 N N3 . DA A 1 2 ? 1.153 3.150 -10.299 1.00 12.31 ? 2 DA A N3 1 ATOM 37 C C4 . DA A 1 2 ? -0.184 3.355 -10.300 1.00 13.86 ? 2 DA A C4 1 ATOM 38 P P A DC A 1 3 ? 4.211 7.653 -8.627 0.23 14.07 ? 3 DC A P 1 ATOM 39 P P B DC A 1 3 ? 3.242 7.390 -7.432 0.77 13.14 ? 3 DC A P 1 ATOM 40 O OP1 A DC A 1 3 ? 4.305 8.879 -7.800 0.23 14.28 ? 3 DC A OP1 1 ATOM 41 O OP1 B DC A 1 3 ? 2.257 6.806 -6.488 0.77 12.34 ? 3 DC A OP1 1 ATOM 42 O OP2 A DC A 1 3 ? 5.020 7.569 -9.882 0.23 11.66 ? 3 DC A OP2 1 ATOM 43 O OP2 B DC A 1 3 ? 3.712 8.771 -7.161 0.77 13.99 ? 3 DC A OP2 1 ATOM 44 O "O5'" . DC A 1 3 ? 4.459 6.400 -7.662 1.00 11.35 ? 3 DC A "O5'" 1 ATOM 45 C "C5'" . DC A 1 3 ? 5.435 6.253 -6.719 1.00 10.21 ? 3 DC A "C5'" 1 ATOM 46 C "C4'" . DC A 1 3 ? 5.941 4.820 -6.619 1.00 11.50 ? 3 DC A "C4'" 1 ATOM 47 O "O4'" . DC A 1 3 ? 4.879 3.990 -6.049 1.00 12.44 ? 3 DC A "O4'" 1 ATOM 48 C "C3'" . DC A 1 3 ? 6.425 4.178 -7.921 1.00 10.14 ? 3 DC A "C3'" 1 ATOM 49 O "O3'" . DC A 1 3 ? 7.565 3.319 -7.634 1.00 13.51 ? 3 DC A "O3'" 1 ATOM 50 C "C2'" . DC A 1 3 ? 5.248 3.301 -8.295 1.00 9.62 ? 3 DC A "C2'" 1 ATOM 51 C "C1'" . DC A 1 3 ? 4.688 2.905 -6.924 1.00 10.15 ? 3 DC A "C1'" 1 ATOM 52 N N1 . DC A 1 3 ? 3.218 2.547 -6.950 1.00 11.99 ? 3 DC A N1 1 ATOM 53 C C2 . DC A 1 3 ? 2.915 1.207 -7.160 1.00 9.12 ? 3 DC A C2 1 ATOM 54 O O2 . DC A 1 3 ? 3.832 0.388 -7.304 1.00 11.06 ? 3 DC A O2 1 ATOM 55 N N3 . DC A 1 3 ? 1.613 0.861 -7.199 1.00 11.88 ? 3 DC A N3 1 ATOM 56 C C4 . DC A 1 3 ? 0.637 1.745 -7.100 1.00 9.89 ? 3 DC A C4 1 ATOM 57 N N4 . DC A 1 3 ? -0.622 1.285 -7.148 1.00 12.13 ? 3 DC A N4 1 ATOM 58 C C5 . DC A 1 3 ? 0.924 3.107 -6.872 1.00 12.05 ? 3 DC A C5 1 ATOM 59 C C6 . DC A 1 3 ? 2.212 3.465 -6.826 1.00 10.58 ? 3 DC A C6 1 ATOM 60 P P . DG A 1 4 ? 9.056 3.883 -7.707 1.00 15.49 ? 4 DG A P 1 ATOM 61 O OP1 . DG A 1 4 ? 9.224 4.646 -8.952 1.00 13.29 ? 4 DG A OP1 1 ATOM 62 O OP2 . DG A 1 4 ? 9.925 2.679 -7.530 1.00 18.13 ? 4 DG A OP2 1 ATOM 63 O "O5'" . DG A 1 4 ? 9.147 4.860 -6.428 1.00 12.93 ? 4 DG A "O5'" 1 ATOM 64 C "C5'" . DG A 1 4 ? 9.113 4.358 -5.121 1.00 12.96 ? 4 DG A "C5'" 1 ATOM 65 C "C4'" . DG A 1 4 ? 9.066 5.478 -4.146 1.00 13.33 ? 4 DG A "C4'" 1 ATOM 66 O "O4'" . DG A 1 4 ? 7.903 6.245 -4.320 1.00 14.14 ? 4 DG A "O4'" 1 ATOM 67 C "C3'" . DG A 1 4 ? 8.948 5.024 -2.726 1.00 16.72 ? 4 DG A "C3'" 1 ATOM 68 O "O3'" . DG A 1 4 ? 10.276 4.836 -2.344 1.00 23.17 ? 4 DG A "O3'" 1 ATOM 69 C "C2'" . DG A 1 4 ? 8.341 6.249 -2.041 1.00 16.31 ? 4 DG A "C2'" 1 ATOM 70 C "C1'" . DG A 1 4 ? 7.480 6.854 -3.118 1.00 17.04 ? 4 DG A "C1'" 1 ATOM 71 N N9 . DG A 1 4 ? 6.047 6.581 -3.119 1.00 18.43 ? 4 DG A N9 1 ATOM 72 C C8 . DG A 1 4 ? 5.062 7.499 -3.142 1.00 17.98 ? 4 DG A C8 1 ATOM 73 N N7 . DG A 1 4 ? 3.870 6.978 -3.153 1.00 18.43 ? 4 DG A N7 1 ATOM 74 C C5 . DG A 1 4 ? 4.084 5.614 -3.191 1.00 18.20 ? 4 DG A C5 1 ATOM 75 C C6 . DG A 1 4 ? 3.131 4.553 -3.247 1.00 19.31 ? 4 DG A C6 1 ATOM 76 O O6 . DG A 1 4 ? 1.897 4.645 -3.262 1.00 17.48 ? 4 DG A O6 1 ATOM 77 N N1 . DG A 1 4 ? 3.738 3.308 -3.256 1.00 20.79 ? 4 DG A N1 1 ATOM 78 C C2 . DG A 1 4 ? 5.083 3.098 -3.203 1.00 20.15 ? 4 DG A C2 1 ATOM 79 N N2 . DG A 1 4 ? 5.432 1.822 -3.218 1.00 20.49 ? 4 DG A N2 1 ATOM 80 N N3 . DG A 1 4 ? 5.996 4.082 -3.169 1.00 21.64 ? 4 DG A N3 1 ATOM 81 C C4 . DG A 1 4 ? 5.412 5.327 -3.142 1.00 18.55 ? 4 DG A C4 1 ATOM 82 P P . DC A 1 5 ? 10.887 3.459 -1.764 1.00 27.31 ? 5 DC A P 1 ATOM 83 O OP1 . DC A 1 5 ? 12.221 3.818 -1.215 1.00 29.55 ? 5 DC A OP1 1 ATOM 84 O OP2 . DC A 1 5 ? 10.824 2.442 -2.882 1.00 26.20 ? 5 DC A OP2 1 ATOM 85 O "O5'" . DC A 1 5 ? 10.039 3.178 -0.418 1.00 18.96 ? 5 DC A "O5'" 1 ATOM 86 C "C5'" . DC A 1 5 ? 10.555 2.277 0.557 1.00 17.17 ? 5 DC A "C5'" 1 ATOM 87 C "C4'" . DC A 1 5 ? 9.585 1.116 0.776 1.00 15.96 ? 5 DC A "C4'" 1 ATOM 88 O "O4'" . DC A 1 5 ? 8.326 1.560 1.371 1.00 13.91 ? 5 DC A "O4'" 1 ATOM 89 C "C3'" . DC A 1 5 ? 9.284 0.306 -0.480 1.00 13.67 ? 5 DC A "C3'" 1 ATOM 90 O "O3'" . DC A 1 5 ? 9.166 -1.056 -0.127 1.00 17.92 ? 5 DC A "O3'" 1 ATOM 91 C "C2'" . DC A 1 5 ? 7.935 0.889 -0.866 1.00 14.37 ? 5 DC A "C2'" 1 ATOM 92 C "C1'" . DC A 1 5 ? 7.291 1.152 0.501 1.00 16.12 ? 5 DC A "C1'" 1 ATOM 93 N N1 . DC A 1 5 ? 6.222 2.187 0.401 1.00 14.81 ? 5 DC A N1 1 ATOM 94 C C2 . DC A 1 5 ? 4.902 1.769 0.222 1.00 16.01 ? 5 DC A C2 1 ATOM 95 O O2 . DC A 1 5 ? 4.626 0.560 0.165 1.00 15.51 ? 5 DC A O2 1 ATOM 96 N N3 . DC A 1 5 ? 3.963 2.716 0.115 1.00 16.85 ? 5 DC A N3 1 ATOM 97 C C4 . DC A 1 5 ? 4.275 4.028 0.174 1.00 18.89 ? 5 DC A C4 1 ATOM 98 N N4 . DC A 1 5 ? 3.285 4.934 0.041 1.00 17.38 ? 5 DC A N4 1 ATOM 99 C C5 . DC A 1 5 ? 5.626 4.464 0.344 1.00 20.30 ? 5 DC A C5 1 ATOM 100 C C6 . DC A 1 5 ? 6.547 3.504 0.463 1.00 19.24 ? 5 DC A C6 1 ATOM 101 P P . DG A 1 6 ? 10.358 -2.103 -0.249 1.00 20.75 ? 6 DG A P 1 ATOM 102 O OP1 . DG A 1 6 ? 11.012 -1.906 -1.580 1.00 21.49 ? 6 DG A OP1 1 ATOM 103 O OP2 . DG A 1 6 ? 9.880 -3.436 0.175 1.00 23.96 ? 6 DG A OP2 1 ATOM 104 O "O5'" . DG A 1 6 ? 11.342 -1.618 0.910 1.00 17.48 ? 6 DG A "O5'" 1 ATOM 105 C "C5'" . DG A 1 6 ? 11.027 -1.760 2.302 1.00 14.16 ? 6 DG A "C5'" 1 ATOM 106 C "C4'" . DG A 1 6 ? 12.158 -1.192 3.135 1.00 15.59 ? 6 DG A "C4'" 1 ATOM 107 O "O4'" . DG A 1 6 ? 12.118 0.257 3.092 1.00 15.46 ? 6 DG A "O4'" 1 ATOM 108 C "C3'" . DG A 1 6 ? 12.217 -1.574 4.604 1.00 16.12 ? 6 DG A "C3'" 1 ATOM 109 O "O3'" . DG A 1 6 ? 13.583 -1.746 4.949 1.00 22.10 ? 6 DG A "O3'" 1 ATOM 110 C "C2'" . DG A 1 6 ? 11.688 -0.363 5.349 1.00 17.67 ? 6 DG A "C2'" 1 ATOM 111 C "C1'" . DG A 1 6 ? 12.047 0.798 4.405 1.00 16.57 ? 6 DG A "C1'" 1 ATOM 112 N N9 . DG A 1 6 ? 11.104 1.908 4.343 1.00 18.35 ? 6 DG A N9 1 ATOM 113 C C8 . DG A 1 6 ? 11.379 3.249 4.369 1.00 16.22 ? 6 DG A C8 1 ATOM 114 N N7 . DG A 1 6 ? 10.327 4.039 4.305 1.00 17.68 ? 6 DG A N7 1 ATOM 115 C C5 . DG A 1 6 ? 9.270 3.133 4.201 1.00 18.14 ? 6 DG A C5 1 ATOM 116 C C6 . DG A 1 6 ? 7.870 3.354 4.077 1.00 15.86 ? 6 DG A C6 1 ATOM 117 O O6 . DG A 1 6 ? 7.324 4.449 4.050 1.00 16.86 ? 6 DG A O6 1 ATOM 118 N N1 . DG A 1 6 ? 7.117 2.177 4.008 1.00 15.50 ? 6 DG A N1 1 ATOM 119 C C2 . DG A 1 6 ? 7.674 0.905 4.028 1.00 17.29 ? 6 DG A C2 1 ATOM 120 N N2 . DG A 1 6 ? 6.889 -0.157 3.925 1.00 16.73 ? 6 DG A N2 1 ATOM 121 N N3 . DG A 1 6 ? 8.989 0.694 4.130 1.00 18.31 ? 6 DG A N3 1 ATOM 122 C C4 . DG A 1 6 ? 9.728 1.829 4.231 1.00 15.81 ? 6 DG A C4 1 ATOM 123 O "O5'" . DC B 2 1 ? -1.683 2.219 3.956 1.00 13.41 ? 7 DC B "O5'" 1 ATOM 124 C "C5'" . DC B 2 1 ? -2.065 1.119 3.134 1.00 15.45 ? 7 DC B "C5'" 1 ATOM 125 C "C4'" . DC B 2 1 ? -0.890 0.160 2.898 1.00 15.66 ? 7 DC B "C4'" 1 ATOM 126 O "O4'" . DC B 2 1 ? 0.244 0.892 2.376 1.00 17.52 ? 7 DC B "O4'" 1 ATOM 127 C "C3'" . DC B 2 1 ? -0.349 -0.633 4.071 1.00 16.84 ? 7 DC B "C3'" 1 ATOM 128 O "O3'" . DC B 2 1 ? 0.125 -1.926 3.641 1.00 17.13 ? 7 DC B "O3'" 1 ATOM 129 C "C2'" . DC B 2 1 ? 0.845 0.189 4.537 1.00 15.01 ? 7 DC B "C2'" 1 ATOM 130 C "C1'" . DC B 2 1 ? 1.370 0.616 3.184 1.00 17.80 ? 7 DC B "C1'" 1 ATOM 131 N N1 . DC B 2 1 ? 2.245 1.820 3.274 1.00 13.50 ? 7 DC B N1 1 ATOM 132 C C2 . DC B 2 1 ? 3.614 1.641 3.531 1.00 14.31 ? 7 DC B C2 1 ATOM 133 O O2 . DC B 2 1 ? 4.073 0.525 3.693 1.00 15.90 ? 7 DC B O2 1 ATOM 134 N N3 . DC B 2 1 ? 4.391 2.728 3.599 1.00 17.15 ? 7 DC B N3 1 ATOM 135 C C4 . DC B 2 1 ? 3.841 3.945 3.434 1.00 17.55 ? 7 DC B C4 1 ATOM 136 N N4 . DC B 2 1 ? 4.637 5.022 3.523 1.00 19.98 ? 7 DC B N4 1 ATOM 137 C C5 . DC B 2 1 ? 2.467 4.145 3.141 1.00 16.61 ? 7 DC B C5 1 ATOM 138 C C6 . DC B 2 1 ? 1.714 3.055 3.083 1.00 15.52 ? 7 DC B C6 1 ATOM 139 P P . DG B 2 2 ? -0.755 -3.234 3.734 1.00 20.99 ? 8 DG B P 1 ATOM 140 O OP1 . DG B 2 2 ? -1.561 -3.210 4.968 1.00 20.67 ? 8 DG B OP1 1 ATOM 141 O OP2 . DG B 2 2 ? 0.201 -4.325 3.468 1.00 24.39 ? 8 DG B OP2 1 ATOM 142 O "O5'" . DG B 2 2 ? -1.799 -3.156 2.526 1.00 20.66 ? 8 DG B "O5'" 1 ATOM 143 C "C5'" . DG B 2 2 ? -1.425 -3.192 1.201 1.00 18.77 ? 8 DG B "C5'" 1 ATOM 144 C "C4'" . DG B 2 2 ? -2.588 -2.727 0.377 1.00 16.41 ? 8 DG B "C4'" 1 ATOM 145 O "O4'" . DG B 2 2 ? -2.868 -1.325 0.641 1.00 17.78 ? 8 DG B "O4'" 1 ATOM 146 C "C3'" . DG B 2 2 ? -2.247 -2.816 -1.111 1.00 17.31 ? 8 DG B "C3'" 1 ATOM 147 O "O3'" . DG B 2 2 ? -2.722 -4.095 -1.643 1.00 18.69 ? 8 DG B "O3'" 1 ATOM 148 C "C2'" . DG B 2 2 ? -2.890 -1.591 -1.772 1.00 17.29 ? 8 DG B "C2'" 1 ATOM 149 C "C1'" . DG B 2 2 ? -3.213 -0.681 -0.586 1.00 17.27 ? 8 DG B "C1'" 1 ATOM 150 N N9 . DG B 2 2 ? -2.491 0.590 -0.561 1.00 17.82 ? 8 DG B N9 1 ATOM 151 C C8 . DG B 2 2 ? -3.029 1.836 -0.540 1.00 16.39 ? 8 DG B C8 1 ATOM 152 N N7 . DG B 2 2 ? -2.150 2.795 -0.496 1.00 17.41 ? 8 DG B N7 1 ATOM 153 C C5 . DG B 2 2 ? -0.930 2.135 -0.474 1.00 17.51 ? 8 DG B C5 1 ATOM 154 C C6 . DG B 2 2 ? 0.391 2.634 -0.455 1.00 17.04 ? 8 DG B C6 1 ATOM 155 O O6 . DG B 2 2 ? 0.698 3.834 -0.418 1.00 17.96 ? 8 DG B O6 1 ATOM 156 N N1 . DG B 2 2 ? 1.359 1.609 -0.458 1.00 16.64 ? 8 DG B N1 1 ATOM 157 C C2 . DG B 2 2 ? 1.070 0.262 -0.498 1.00 18.04 ? 8 DG B C2 1 ATOM 158 N N2 . DG B 2 2 ? 2.047 -0.628 -0.496 1.00 19.17 ? 8 DG B N2 1 ATOM 159 N N3 . DG B 2 2 ? -0.159 -0.205 -0.533 1.00 18.27 ? 8 DG B N3 1 ATOM 160 C C4 . DG B 2 2 ? -1.112 0.768 -0.524 1.00 17.84 ? 8 DG B C4 1 ATOM 161 P P A DC B 2 3 ? -1.636 -5.218 -2.050 0.45 19.26 ? 9 DC B P 1 ATOM 162 P P B DC B 2 3 ? -2.492 -4.492 -3.207 0.55 17.77 ? 9 DC B P 1 ATOM 163 O OP1 A DC B 2 3 ? -2.318 -6.379 -2.644 0.45 18.44 ? 9 DC B OP1 1 ATOM 164 O OP1 B DC B 2 3 ? -3.016 -3.473 -4.128 0.55 15.28 ? 9 DC B OP1 1 ATOM 165 O OP2 A DC B 2 3 ? -0.726 -5.454 -0.911 0.45 19.49 ? 9 DC B OP2 1 ATOM 166 O OP2 B DC B 2 3 ? -2.933 -5.880 -3.376 0.55 19.03 ? 9 DC B OP2 1 ATOM 167 O "O5'" . DC B 2 3 ? -0.876 -4.518 -3.265 1.00 17.18 ? 9 DC B "O5'" 1 ATOM 168 C "C5'" . DC B 2 3 ? -0.189 -5.313 -4.210 1.00 16.66 ? 9 DC B "C5'" 1 ATOM 169 C "C4'" . DC B 2 3 ? 1.174 -4.688 -4.463 1.00 15.34 ? 9 DC B "C4'" 1 ATOM 170 O "O4'" . DC B 2 3 ? 1.081 -3.336 -4.970 1.00 15.54 ? 9 DC B "O4'" 1 ATOM 171 C "C3'" . DC B 2 3 ? 2.057 -4.604 -3.232 1.00 13.51 ? 9 DC B "C3'" 1 ATOM 172 O "O3'" . DC B 2 3 ? 3.349 -5.007 -3.586 1.00 14.54 ? 9 DC B "O3'" 1 ATOM 173 C "C2'" . DC B 2 3 ? 1.989 -3.138 -2.856 1.00 14.95 ? 9 DC B "C2'" 1 ATOM 174 C "C1'" . DC B 2 3 ? 1.964 -2.519 -4.234 1.00 15.15 ? 9 DC B "C1'" 1 ATOM 175 N N1 . DC B 2 3 ? 1.422 -1.169 -4.090 1.00 13.59 ? 9 DC B N1 1 ATOM 176 C C2 . DC B 2 3 ? 2.316 -0.105 -3.875 1.00 12.00 ? 9 DC B C2 1 ATOM 177 O O2 . DC B 2 3 ? 3.525 -0.357 -3.782 1.00 11.50 ? 9 DC B O2 1 ATOM 178 N N3 . DC B 2 3 ? 1.788 1.123 -3.724 1.00 15.16 ? 9 DC B N3 1 ATOM 179 C C4 . DC B 2 3 ? 0.474 1.351 -3.790 1.00 14.85 ? 9 DC B C4 1 ATOM 180 N N4 . DC B 2 3 ? -0.005 2.590 -3.648 1.00 18.22 ? 9 DC B N4 1 ATOM 181 C C5 . DC B 2 3 ? -0.449 0.295 -4.039 1.00 17.43 ? 9 DC B C5 1 ATOM 182 C C6 . DC B 2 3 ? 0.068 -0.942 -4.173 1.00 13.53 ? 9 DC B C6 1 ATOM 183 P P . DG B 2 4 ? 3.748 -6.553 -3.417 1.00 19.11 ? 10 DG B P 1 ATOM 184 O OP1 . DG B 2 4 ? 2.990 -7.244 -2.369 1.00 19.61 ? 10 DG B OP1 1 ATOM 185 O OP2 . DG B 2 4 ? 5.206 -6.654 -3.496 1.00 17.54 ? 10 DG B OP2 1 ATOM 186 O "O5'" . DG B 2 4 ? 3.211 -7.217 -4.771 1.00 18.24 ? 10 DG B "O5'" 1 ATOM 187 C "C5'" . DG B 2 4 ? 3.550 -6.684 -6.030 1.00 16.41 ? 10 DG B "C5'" 1 ATOM 188 C "C4'" . DG B 2 4 ? 2.737 -7.446 -7.061 1.00 14.74 ? 10 DG B "C4'" 1 ATOM 189 O "O4'" . DG B 2 4 ? 1.340 -7.059 -6.923 1.00 12.26 ? 10 DG B "O4'" 1 ATOM 190 C "C3'" . DG B 2 4 ? 3.115 -7.125 -8.494 1.00 13.74 ? 10 DG B "C3'" 1 ATOM 191 O "O3'" . DG B 2 4 ? 4.088 -8.087 -9.026 1.00 15.38 ? 10 DG B "O3'" 1 ATOM 192 C "C2'" . DG B 2 4 ? 1.795 -7.118 -9.247 1.00 13.66 ? 10 DG B "C2'" 1 ATOM 193 C "C1'" . DG B 2 4 ? 0.732 -6.971 -8.179 1.00 13.53 ? 10 DG B "C1'" 1 ATOM 194 N N9 . DG B 2 4 ? 0.074 -5.698 -8.101 1.00 14.45 ? 10 DG B N9 1 ATOM 195 C C8 . DG B 2 4 ? -1.276 -5.538 -8.082 1.00 13.84 ? 10 DG B C8 1 ATOM 196 N N7 . DG B 2 4 ? -1.678 -4.314 -7.968 1.00 16.34 ? 10 DG B N7 1 ATOM 197 C C5 . DG B 2 4 ? -0.470 -3.631 -7.869 1.00 14.74 ? 10 DG B C5 1 ATOM 198 C C6 . DG B 2 4 ? -0.275 -2.247 -7.740 1.00 15.06 ? 10 DG B C6 1 ATOM 199 O O6 . DG B 2 4 ? -1.155 -1.381 -7.662 1.00 13.42 ? 10 DG B O6 1 ATOM 200 N N1 . DG B 2 4 ? 1.087 -1.935 -7.719 1.00 14.45 ? 10 DG B N1 1 ATOM 201 C C2 . DG B 2 4 ? 2.101 -2.823 -7.771 1.00 13.73 ? 10 DG B C2 1 ATOM 202 N N2 . DG B 2 4 ? 3.313 -2.279 -7.668 1.00 13.23 ? 10 DG B N2 1 ATOM 203 N N3 . DG B 2 4 ? 1.933 -4.136 -7.884 1.00 14.72 ? 10 DG B N3 1 ATOM 204 C C4 . DG B 2 4 ? 0.622 -4.450 -7.943 1.00 13.61 ? 10 DG B C4 1 ATOM 205 P P A DT B 2 5 ? 5.603 -7.661 -9.428 0.65 15.30 ? 11 DT B P 1 ATOM 206 P P B DT B 2 5 ? 4.518 -8.071 -10.599 0.35 13.66 ? 11 DT B P 1 ATOM 207 O OP1 A DT B 2 5 ? 6.289 -8.911 -9.849 0.65 13.59 ? 11 DT B OP1 1 ATOM 208 O OP1 B DT B 2 5 ? 3.361 -7.961 -11.509 0.35 12.54 ? 11 DT B OP1 1 ATOM 209 O OP2 A DT B 2 5 ? 6.260 -6.804 -8.395 0.65 12.55 ? 11 DT B OP2 1 ATOM 210 O OP2 B DT B 2 5 ? 5.475 -9.194 -10.777 0.35 15.17 ? 11 DT B OP2 1 ATOM 211 O "O5'" . DT B 2 5 ? 5.300 -6.691 -10.702 1.00 13.97 ? 11 DT B "O5'" 1 ATOM 212 C "C5'" . DT B 2 5 ? 6.234 -6.475 -11.746 1.00 12.33 ? 11 DT B "C5'" 1 ATOM 213 C "C4'" . DT B 2 5 ? 6.402 -4.983 -11.988 1.00 13.22 ? 11 DT B "C4'" 1 ATOM 214 O "O4'" . DT B 2 5 ? 5.126 -4.477 -12.388 1.00 12.50 ? 11 DT B "O4'" 1 ATOM 215 C "C3'" . DT B 2 5 ? 6.821 -4.112 -10.775 1.00 13.44 ? 11 DT B "C3'" 1 ATOM 216 O "O3'" . DT B 2 5 ? 7.783 -3.144 -11.229 1.00 14.47 ? 11 DT B "O3'" 1 ATOM 217 C "C2'" . DT B 2 5 ? 5.517 -3.459 -10.321 1.00 13.79 ? 11 DT B "C2'" 1 ATOM 218 C "C1'" . DT B 2 5 ? 4.816 -3.297 -11.668 1.00 13.60 ? 11 DT B "C1'" 1 ATOM 219 N N1 . DT B 2 5 ? 3.370 -3.145 -11.526 1.00 12.50 ? 11 DT B N1 1 ATOM 220 C C2 . DT B 2 5 ? 2.906 -1.864 -11.300 1.00 12.18 ? 11 DT B C2 1 ATOM 221 O O2 . DT B 2 5 ? 3.609 -0.862 -11.227 1.00 11.76 ? 11 DT B O2 1 ATOM 222 N N3 . DT B 2 5 ? 1.566 -1.814 -11.127 1.00 11.65 ? 11 DT B N3 1 ATOM 223 C C4 . DT B 2 5 ? 0.644 -2.822 -11.180 1.00 11.40 ? 11 DT B C4 1 ATOM 224 O O4 . DT B 2 5 ? -0.527 -2.612 -11.037 1.00 13.89 ? 11 DT B O4 1 ATOM 225 C C5 . DT B 2 5 ? 1.169 -4.134 -11.422 1.00 13.57 ? 11 DT B C5 1 ATOM 226 C C7 . DT B 2 5 ? 0.204 -5.216 -11.835 1.00 15.93 ? 11 DT B C7 1 ATOM 227 C C6 . DT B 2 5 ? 2.530 -4.230 -11.555 1.00 13.36 ? 11 DT B C6 1 ATOM 228 P P . DG B 2 6 ? 9.297 -3.488 -11.030 1.00 18.50 ? 12 DG B P 1 ATOM 229 O OP1 . DG B 2 6 ? 9.539 -4.254 -9.805 1.00 19.65 ? 12 DG B OP1 1 ATOM 230 O OP2 . DG B 2 6 ? 9.977 -2.197 -11.300 1.00 24.38 ? 12 DG B OP2 1 ATOM 231 O "O5'" . DG B 2 6 ? 9.535 -4.545 -12.194 1.00 15.14 ? 12 DG B "O5'" 1 ATOM 232 C "C5'" . DG B 2 6 ? 9.667 -4.151 -13.495 1.00 14.68 ? 12 DG B "C5'" 1 ATOM 233 C "C4'" . DG B 2 6 ? 10.179 -5.309 -14.339 1.00 12.77 ? 12 DG B "C4'" 1 ATOM 234 O "O4'" . DG B 2 6 ? 9.016 -6.183 -14.432 1.00 12.16 ? 12 DG B "O4'" 1 ATOM 235 C "C3'" . DG B 2 6 ? 10.522 -4.951 -15.793 1.00 11.59 ? 12 DG B "C3'" 1 ATOM 236 O "O3'" . DG B 2 6 ? 11.451 -5.860 -16.429 1.00 13.45 ? 12 DG B "O3'" 1 ATOM 237 C "C2'" . DG B 2 6 ? 9.172 -5.092 -16.484 1.00 10.27 ? 12 DG B "C2'" 1 ATOM 238 C "C1'" . DG B 2 6 ? 8.593 -6.305 -15.750 1.00 10.15 ? 12 DG B "C1'" 1 ATOM 239 N N9 . DG B 2 6 ? 7.159 -6.358 -15.604 1.00 13.35 ? 12 DG B N9 1 ATOM 240 C C8 . DG B 2 6 ? 6.434 -7.519 -15.622 1.00 10.88 ? 12 DG B C8 1 ATOM 241 N N7 . DG B 2 6 ? 5.190 -7.319 -15.428 1.00 12.45 ? 12 DG B N7 1 ATOM 242 C C5 . DG B 2 6 ? 5.022 -5.941 -15.325 1.00 14.39 ? 12 DG B C5 1 ATOM 243 C C6 . DG B 2 6 ? 3.864 -5.133 -15.151 1.00 12.01 ? 12 DG B C6 1 ATOM 244 O O6 . DG B 2 6 ? 2.702 -5.460 -15.070 1.00 11.62 ? 12 DG B O6 1 ATOM 245 N N1 . DG B 2 6 ? 4.161 -3.784 -15.083 1.00 14.32 ? 12 DG B N1 1 ATOM 246 C C2 . DG B 2 6 ? 5.404 -3.241 -15.176 1.00 12.94 ? 12 DG B C2 1 ATOM 247 N N2 . DG B 2 6 ? 5.495 -1.907 -15.065 1.00 12.14 ? 12 DG B N2 1 ATOM 248 N N3 . DG B 2 6 ? 6.491 -3.985 -15.357 1.00 12.86 ? 12 DG B N3 1 ATOM 249 C C4 . DG B 2 6 ? 6.243 -5.321 -15.414 1.00 13.15 ? 12 DG B C4 1 HETATM 250 BA BA A BA C 3 . ? 0.950 7.188 -4.109 0.85 22.90 ? 7 BA A BA 1 HETATM 251 BA BA B BA C 3 . ? 0.377 8.260 -3.590 0.15 10.86 ? 7 BA A BA 1 HETATM 252 O O . HOH D 4 . ? 8.368 0.975 -3.985 1.00 15.96 ? 8 HOH A O 1 HETATM 253 O O . HOH D 4 . ? 8.778 0.726 -6.787 1.00 21.61 ? 9 HOH A O 1 HETATM 254 O O . HOH D 4 . ? 12.339 2.261 -11.341 1.00 20.20 ? 10 HOH A O 1 HETATM 255 O O . HOH D 4 . ? 9.871 2.685 -12.619 1.00 23.55 ? 11 HOH A O 1 HETATM 256 O O . HOH D 4 . ? 2.500 11.040 -7.838 1.00 16.12 ? 12 HOH A O 1 HETATM 257 O O . HOH D 4 . ? 11.914 7.579 -3.221 1.00 18.94 ? 13 HOH A O 1 HETATM 258 O O . HOH D 4 . ? 14.505 3.523 -3.613 1.00 21.79 ? 14 HOH A O 1 HETATM 259 O O . HOH D 4 . ? 7.344 6.831 -12.257 1.00 24.26 ? 15 HOH A O 1 HETATM 260 O O . HOH D 4 . ? 6.799 6.968 -14.443 1.00 15.56 ? 17 HOH A O 1 HETATM 261 O O . HOH D 4 . ? 8.823 5.241 -13.259 1.00 25.52 ? 18 HOH A O 1 HETATM 262 O O . HOH D 4 . ? 0.307 6.556 -17.310 1.00 23.50 ? 19 HOH A O 1 HETATM 263 O O . HOH D 4 . ? 1.032 3.138 -18.900 1.00 22.25 ? 20 HOH A O 1 HETATM 264 O O . HOH D 4 . ? 4.312 13.119 -7.801 1.00 20.40 ? 25 HOH A O 1 HETATM 265 O O . HOH D 4 . ? -3.155 0.701 -13.214 1.00 24.79 ? 28 HOH A O 1 HETATM 266 O O . HOH D 4 . ? 5.042 3.483 -11.680 1.00 28.91 ? 29 HOH A O 1 HETATM 267 O O . HOH D 4 . ? 0.959 7.778 -1.620 1.00 33.03 ? 30 HOH A O 1 HETATM 268 O O . HOH D 4 . ? -1.458 4.453 -17.579 1.00 28.39 ? 31 HOH A O 1 HETATM 269 O O . HOH D 4 . ? 6.578 -0.237 -7.817 1.00 24.45 ? 34 HOH A O 1 HETATM 270 O O . HOH D 4 . ? -4.520 4.083 -13.574 1.00 27.30 ? 35 HOH A O 1 HETATM 271 O O . HOH D 4 . ? 5.740 -2.311 -0.474 1.00 28.22 ? 37 HOH A O 1 HETATM 272 O O . HOH D 4 . ? 12.129 -4.809 1.377 1.00 36.20 ? 39 HOH A O 1 HETATM 273 O O . HOH E 4 . ? -4.049 -2.111 -7.517 1.00 7.81 ? 1 HOH B O 1 HETATM 274 O O . HOH E 4 . ? 10.555 -4.018 -7.216 1.00 16.27 ? 3 HOH B O 1 HETATM 275 O O . HOH E 4 . ? 11.611 -4.466 -18.849 1.00 21.21 ? 4 HOH B O 1 HETATM 276 O O . HOH E 4 . ? 9.484 -3.891 -5.235 1.00 9.58 ? 5 HOH B O 1 HETATM 277 O O . HOH E 4 . ? -2.390 -8.877 -1.379 1.00 11.10 ? 6 HOH B O 1 HETATM 278 O O . HOH E 4 . ? 9.341 -8.204 -12.499 1.00 14.21 ? 14 HOH B O 1 HETATM 279 O O . HOH E 4 . ? 5.621 -4.366 -7.104 1.00 18.32 ? 15 HOH B O 1 HETATM 280 O O . HOH E 4 . ? 3.856 -1.444 5.639 1.00 18.24 ? 16 HOH B O 1 HETATM 281 O O . HOH E 4 . ? 8.375 -0.483 -14.377 1.00 18.09 ? 21 HOH B O 1 HETATM 282 O O . HOH E 4 . ? -2.151 1.112 6.520 1.00 15.63 ? 22 HOH B O 1 HETATM 283 O O . HOH E 4 . ? 1.013 -9.928 -16.169 1.00 20.72 ? 23 HOH B O 1 HETATM 284 O O . HOH E 4 . ? -3.528 -0.659 -5.079 1.00 21.67 ? 24 HOH B O 1 HETATM 285 O O . HOH E 4 . ? 10.544 -6.899 -5.230 1.00 30.73 ? 26 HOH B O 1 HETATM 286 O O . HOH E 4 . ? 2.208 -3.215 0.682 1.00 22.36 ? 27 HOH B O 1 HETATM 287 O O . HOH E 4 . ? 2.450 -8.103 -14.194 1.00 26.93 ? 32 HOH B O 1 HETATM 288 O O . HOH E 4 . ? 6.104 -4.179 -4.499 1.00 18.26 ? 33 HOH B O 1 HETATM 289 O O . HOH E 4 . ? 10.053 -6.710 -1.924 1.00 30.74 ? 36 HOH B O 1 HETATM 290 O O . HOH E 4 . ? -2.771 -4.285 -11.288 1.00 25.54 ? 38 HOH B O 1 #