data_3HR3 # _entry.id 3HR3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3HR3 pdb_00003hr3 10.2210/pdb3hr3/pdb NDB NA0041 ? ? RCSB RCSB053479 ? ? WWPDB D_1000053479 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3HR3 _pdbx_database_status.recvd_initial_deposition_date 2009-06-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Egli, M.' 1 'Pallan, P.S.' 2 # _citation.id primary _citation.title ;Interplay of structure, hydration and thermal stability in formacetal modified oligonucleotides: RNA may tolerate nonionic modifications better than DNA. ; _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 131 _citation.page_first 14932 _citation.page_last 14937 _citation.year 2009 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19824732 _citation.pdbx_database_id_DOI 10.1021/ja904926e # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kolarovic, A.' 1 ? primary 'Schweizer, E.' 2 ? primary 'Greene, E.' 3 ? primary 'Gironda, M.' 4 ? primary 'Pallan, P.S.' 5 ? primary 'Egli, M.' 6 ? primary 'Rozners, E.' 7 ? # _cell.entry_id 3HR3 _cell.length_a 33.199 _cell.length_b 33.199 _cell.length_c 68.508 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3HR3 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*CP*GP*(US4)P*(OMU))P*AP*CP*GP*C)-3'" 3011.051 1 ? ? ? ? 2 water nat water 18.015 23 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DG)(DC)(DG)(US4)(OMU)(DA)(DC)(DG)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GCGXUACGC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DG n 1 4 US4 n 1 5 OMU n 1 6 DA n 1 7 DC n 1 8 DG n 1 9 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ;Chemically synthesize deoxyribonucleotide, US4 = Formacetal linked thymidine and 2'-deoxyadenosine (TfA) ; # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3HR3 _struct_ref.pdbx_db_accession 3HR3 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code GCGNUACGC _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3HR3 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 9 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3HR3 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 10 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 OMU 'RNA linking' n ;O2'-METHYLURIDINE 5'-MONOPHOSPHATE ; ? 'C10 H15 N2 O9 P' 338.208 US4 'DNA linking' . ;[(2R,3S,5R)-3-({[(2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-3-hydroxytetrahydrofuran-2-yl]methoxy}methoxy)-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-2-yl]methyl dihydrogen phosphate ; ? 'C21 H28 N7 O11 P' 585.461 # _exptl.entry_id 3HR3 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.13 _exptl_crystal.density_percent_sol 60.76 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details ;Sodium cacodylate (20 mM, pH 6.0), potassium chloride (40 mM), magnesium chloride (10 mM), spermine tetrahydrochloride (6 mM), and 2-methyl-2,4-pentanediol (MPD 5% v/v) , VAPOR DIFFUSION, HANGING DROP, temperature 291K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2009-01-20 _diffrn_detector.details 'Monochromator Si(111)' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X25' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X25 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9795 # _reflns.entry_id 3HR3 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.75 _reflns.number_obs 4006 _reflns.number_all 4208 _reflns.percent_possible_obs 95.2 _reflns.pdbx_Rmerge_I_obs 0.058 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 18.7 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 17 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.75 _reflns_shell.d_res_low 1.78 _reflns_shell.percent_possible_all 72.4 _reflns_shell.Rmerge_I_obs 0.187 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 5.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 139 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3HR3 _refine.ls_number_reflns_obs 3714 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.88 _refine.ls_d_res_high 1.75 _refine.ls_percent_reflns_obs 95.00 _refine.ls_R_factor_obs 0.23147 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.22786 _refine.ls_R_factor_R_free 0.28185 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.3 _refine.ls_number_reflns_R_free 291 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.960 _refine.correlation_coeff_Fo_to_Fc_free 0.940 _refine.B_iso_mean 35.242 _refine.aniso_B[1][1] 1.35 _refine.aniso_B[2][2] 1.35 _refine.aniso_B[3][3] -2.71 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'Single strand from the duplex of PDB ID 411D.' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.156 _refine.pdbx_overall_ESU_R_Free 0.128 _refine.overall_SU_ML 0.099 _refine.overall_SU_B 7.139 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 201 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 23 _refine_hist.number_atoms_total 224 _refine_hist.d_res_high 1.75 _refine_hist.d_res_low 29.88 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.022 0.021 ? 225 'X-RAY DIFFRACTION' ? r_angle_refined_deg 3.037 2.974 ? 344 'X-RAY DIFFRACTION' ? r_chiral_restr 0.120 0.200 ? 39 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.015 0.020 ? 104 'X-RAY DIFFRACTION' ? r_scbond_it 3.515 3.000 ? 225 'X-RAY DIFFRACTION' ? r_scangle_it 4.519 4.500 ? 343 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 3.280 3.000 ? 225 'X-RAY DIFFRACTION' ? r_sphericity_free 7.990 3.000 ? 29 'X-RAY DIFFRACTION' ? r_sphericity_bonded 6.083 3.000 ? 201 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.753 _refine_ls_shell.d_res_low 1.799 _refine_ls_shell.number_reflns_R_work 199 _refine_ls_shell.R_factor_R_work 0.376 _refine_ls_shell.percent_reflns_obs 73.65 _refine_ls_shell.R_factor_R_free 0.373 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 19 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3HR3 _struct.title ;Interplay of Structure, Hydration and Thermal Stability in Formacetal Modified Oligonucleotides: RNA May Tolerate Hydrophobic Modifications Better than DNA ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3HR3 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA, RNA, formacetal-DNA, RNA hydration' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 3 "O3'" ? ? ? 1_555 A US4 4 P ? ? A DG 3 A US4 4 1_555 ? ? ? ? ? ? ? 1.553 ? ? covale2 covale both ? A US4 4 "OZ'" ? ? ? 1_555 A OMU 5 P ? ? A US4 4 A OMU 6 1_555 ? ? ? ? ? ? ? 1.557 ? ? covale3 covale both ? A OMU 5 "O3'" ? ? ? 1_555 A DA 6 P ? ? A OMU 6 A DA 7 1_555 ? ? ? ? ? ? ? 1.597 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 9 N3 ? ? A DG 1 A DC 10 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 9 O2 ? ? A DG 1 A DC 10 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 9 N4 ? ? A DG 1 A DC 10 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 8 N1 ? ? A DC 2 A DG 9 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 8 O6 ? ? A DC 2 A DG 9 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 8 N2 ? ? A DC 2 A DG 9 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 7 N3 ? ? A DG 3 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 7 O2 ? ? A DG 3 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 7 N4 ? ? A DG 3 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 7 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 8 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 7 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 8 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 7 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 8 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DC 2 N3 ? ? A DG 9 A DC 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DC 2 O2 ? ? A DG 9 A DC 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 8 O6 ? ? ? 1_555 A DC 2 N4 ? ? A DG 9 A DC 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 9 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 10 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 9 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 10 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 9 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 10 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _database_PDB_matrix.entry_id 3HR3 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3HR3 _atom_sites.fract_transf_matrix[1][1] 0.030121 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030121 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014597 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DG A 1 1 ? 16.840 7.174 -4.764 1.00 35.19 ? 1 DG A "O5'" 1 ATOM 2 C "C5'" . DG A 1 1 ? 17.872 8.102 -4.679 1.00 34.50 ? 1 DG A "C5'" 1 ATOM 3 C "C4'" . DG A 1 1 ? 17.680 9.140 -5.730 1.00 32.14 ? 1 DG A "C4'" 1 ATOM 4 O "O4'" . DG A 1 1 ? 17.822 8.502 -7.006 1.00 33.41 ? 1 DG A "O4'" 1 ATOM 5 C "C3'" . DG A 1 1 ? 16.333 9.807 -5.766 1.00 33.70 ? 1 DG A "C3'" 1 ATOM 6 O "O3'" . DG A 1 1 ? 16.343 10.950 -4.989 1.00 35.68 ? 1 DG A "O3'" 1 ATOM 7 C "C2'" . DG A 1 1 ? 16.282 10.268 -7.186 1.00 31.29 ? 1 DG A "C2'" 1 ATOM 8 C "C1'" . DG A 1 1 ? 16.840 9.049 -7.863 1.00 32.25 ? 1 DG A "C1'" 1 ATOM 9 N N9 . DG A 1 1 ? 15.948 7.964 -8.289 1.00 31.03 ? 1 DG A N9 1 ATOM 10 C C8 . DG A 1 1 ? 16.108 6.646 -8.021 1.00 30.65 ? 1 DG A C8 1 ATOM 11 N N7 . DG A 1 1 ? 15.212 5.886 -8.579 1.00 31.35 ? 1 DG A N7 1 ATOM 12 C C5 . DG A 1 1 ? 14.451 6.786 -9.304 1.00 31.81 ? 1 DG A C5 1 ATOM 13 C C6 . DG A 1 1 ? 13.336 6.518 -10.136 1.00 29.97 ? 1 DG A C6 1 ATOM 14 O O6 . DG A 1 1 ? 12.817 5.382 -10.367 1.00 34.28 ? 1 DG A O6 1 ATOM 15 N N1 . DG A 1 1 ? 12.882 7.713 -10.666 1.00 28.93 ? 1 DG A N1 1 ATOM 16 C C2 . DG A 1 1 ? 13.406 8.957 -10.437 1.00 28.44 ? 1 DG A C2 1 ATOM 17 N N2 . DG A 1 1 ? 12.814 9.984 -11.075 1.00 31.83 ? 1 DG A N2 1 ATOM 18 N N3 . DG A 1 1 ? 14.456 9.209 -9.660 1.00 28.61 ? 1 DG A N3 1 ATOM 19 C C4 . DG A 1 1 ? 14.923 8.078 -9.160 1.00 28.22 ? 1 DG A C4 1 ATOM 20 P P . DC A 1 2 ? 15.172 11.367 -3.984 1.00 38.61 ? 2 DC A P 1 ATOM 21 O OP1 . DC A 1 2 ? 15.520 12.571 -3.203 1.00 38.86 ? 2 DC A OP1 1 ATOM 22 O OP2 . DC A 1 2 ? 14.658 10.124 -3.352 1.00 37.77 ? 2 DC A OP2 1 ATOM 23 O "O5'" . DC A 1 2 ? 14.133 11.851 -5.068 1.00 37.12 ? 2 DC A "O5'" 1 ATOM 24 C "C5'" . DC A 1 2 ? 14.309 13.081 -5.767 1.00 38.57 ? 2 DC A "C5'" 1 ATOM 25 C "C4'" . DC A 1 2 ? 13.220 13.344 -6.764 1.00 38.30 ? 2 DC A "C4'" 1 ATOM 26 O "O4'" . DC A 1 2 ? 13.253 12.368 -7.817 1.00 36.82 ? 2 DC A "O4'" 1 ATOM 27 C "C3'" . DC A 1 2 ? 11.839 13.154 -6.174 1.00 38.80 ? 2 DC A "C3'" 1 ATOM 28 O "O3'" . DC A 1 2 ? 11.405 14.238 -5.407 1.00 42.14 ? 2 DC A "O3'" 1 ATOM 29 C "C2'" . DC A 1 2 ? 11.018 13.013 -7.438 1.00 38.59 ? 2 DC A "C2'" 1 ATOM 30 C "C1'" . DC A 1 2 ? 11.907 12.055 -8.176 1.00 34.68 ? 2 DC A "C1'" 1 ATOM 31 N N1 . DC A 1 2 ? 11.678 10.614 -7.957 1.00 33.17 ? 2 DC A N1 1 ATOM 32 C C2 . DC A 1 2 ? 10.648 10.041 -8.672 1.00 28.94 ? 2 DC A C2 1 ATOM 33 O O2 . DC A 1 2 ? 10.043 10.799 -9.425 1.00 34.47 ? 2 DC A O2 1 ATOM 34 N N3 . DC A 1 2 ? 10.467 8.713 -8.568 1.00 29.89 ? 2 DC A N3 1 ATOM 35 C C4 . DC A 1 2 ? 11.213 7.996 -7.716 1.00 27.51 ? 2 DC A C4 1 ATOM 36 N N4 . DC A 1 2 ? 11.031 6.694 -7.559 1.00 28.19 ? 2 DC A N4 1 ATOM 37 C C5 . DC A 1 2 ? 12.238 8.559 -6.957 1.00 31.38 ? 2 DC A C5 1 ATOM 38 C C6 . DC A 1 2 ? 12.436 9.865 -7.097 1.00 29.22 ? 2 DC A C6 1 ATOM 39 P P . DG A 1 3 ? 10.233 14.055 -4.322 1.00 43.40 ? 3 DG A P 1 ATOM 40 O OP1 . DG A 1 3 ? 10.002 15.404 -3.731 1.00 43.77 ? 3 DG A OP1 1 ATOM 41 O OP2 . DG A 1 3 ? 10.450 12.922 -3.413 1.00 38.66 ? 3 DG A OP2 1 ATOM 42 O "O5'" . DG A 1 3 ? 9.005 13.632 -5.231 1.00 39.60 ? 3 DG A "O5'" 1 ATOM 43 C "C5'" . DG A 1 3 ? 8.235 14.597 -5.777 1.00 37.30 ? 3 DG A "C5'" 1 ATOM 44 C "C4'" . DG A 1 3 ? 7.152 14.047 -6.661 1.00 35.58 ? 3 DG A "C4'" 1 ATOM 45 O "O4'" . DG A 1 3 ? 7.623 12.977 -7.495 1.00 34.44 ? 3 DG A "O4'" 1 ATOM 46 C "C3'" . DG A 1 3 ? 6.055 13.418 -5.862 1.00 35.04 ? 3 DG A "C3'" 1 ATOM 47 O "O3'" . DG A 1 3 ? 5.239 14.428 -5.413 1.00 35.65 ? 3 DG A "O3'" 1 ATOM 48 C "C2'" . DG A 1 3 ? 5.372 12.569 -6.925 1.00 34.49 ? 3 DG A "C2'" 1 ATOM 49 C "C1'" . DG A 1 3 ? 6.599 12.013 -7.638 1.00 34.95 ? 3 DG A "C1'" 1 ATOM 50 N N9 . DG A 1 3 ? 7.100 10.713 -7.128 1.00 30.09 ? 3 DG A N9 1 ATOM 51 C C8 . DG A 1 3 ? 8.153 10.506 -6.268 1.00 28.06 ? 3 DG A C8 1 ATOM 52 N N7 . DG A 1 3 ? 8.324 9.249 -6.023 1.00 27.25 ? 3 DG A N7 1 ATOM 53 C C5 . DG A 1 3 ? 7.287 8.595 -6.755 1.00 26.28 ? 3 DG A C5 1 ATOM 54 C C6 . DG A 1 3 ? 6.909 7.255 -6.909 1.00 25.73 ? 3 DG A C6 1 ATOM 55 O O6 . DG A 1 3 ? 7.428 6.265 -6.417 1.00 28.20 ? 3 DG A O6 1 ATOM 56 N N1 . DG A 1 3 ? 5.785 7.046 -7.699 1.00 26.50 ? 3 DG A N1 1 ATOM 57 C C2 . DG A 1 3 ? 5.101 8.033 -8.292 1.00 25.69 ? 3 DG A C2 1 ATOM 58 N N2 . DG A 1 3 ? 4.007 7.719 -9.058 1.00 28.70 ? 3 DG A N2 1 ATOM 59 N N3 . DG A 1 3 ? 5.424 9.281 -8.172 1.00 29.42 ? 3 DG A N3 1 ATOM 60 C C4 . DG A 1 3 ? 6.526 9.499 -7.403 1.00 28.75 ? 3 DG A C4 1 HETATM 61 P P . US4 A 1 4 ? 4.292 14.202 -4.203 1.00 36.50 ? 4 US4 A P 1 HETATM 62 O O1P . US4 A 1 4 ? 4.988 13.688 -3.015 1.00 33.72 ? 4 US4 A O1P 1 HETATM 63 O O2P . US4 A 1 4 ? 3.697 15.542 -3.889 1.00 38.61 ? 4 US4 A O2P 1 HETATM 64 O "O5'" . US4 A 1 4 ? 3.103 13.241 -4.561 1.00 37.51 ? 4 US4 A "O5'" 1 HETATM 65 C "C5'" . US4 A 1 4 ? 2.149 13.538 -5.584 1.00 36.98 ? 4 US4 A "C5'" 1 HETATM 66 C "C4'" . US4 A 1 4 ? 1.335 12.315 -5.977 1.00 35.73 ? 4 US4 A "C4'" 1 HETATM 67 C "C3'" . US4 A 1 4 ? 0.763 11.584 -4.804 1.00 34.40 ? 4 US4 A "C3'" 1 HETATM 68 C "C2'" . US4 A 1 4 ? 0.599 10.218 -5.405 1.00 32.70 ? 4 US4 A "C2'" 1 HETATM 69 C "C1'" . US4 A 1 4 ? 1.839 10.094 -6.313 1.00 31.77 ? 4 US4 A "C1'" 1 HETATM 70 O "O4'" . US4 A 1 4 ? 2.261 11.424 -6.528 1.00 33.77 ? 4 US4 A "O4'" 1 HETATM 71 N N1 . US4 A 1 4 ? 2.911 9.404 -5.578 1.00 29.61 ? 4 US4 A N1 1 HETATM 72 C C2 . US4 A 1 4 ? 2.918 8.073 -5.585 1.00 28.50 ? 4 US4 A C2 1 HETATM 73 N N3 . US4 A 1 4 ? 3.866 7.357 -4.946 1.00 27.83 ? 4 US4 A N3 1 HETATM 74 C C4 . US4 A 1 4 ? 4.849 7.951 -4.264 1.00 25.98 ? 4 US4 A C4 1 HETATM 75 O O4 . US4 A 1 4 ? 5.764 7.150 -3.645 1.00 28.99 ? 4 US4 A O4 1 HETATM 76 C C5 . US4 A 1 4 ? 4.882 9.327 -4.234 1.00 26.60 ? 4 US4 A C5 1 HETATM 77 C C5M . US4 A 1 4 ? 5.932 10.050 -3.458 1.00 26.66 ? 4 US4 A C5M 1 HETATM 78 C C6 . US4 A 1 4 ? 3.881 10.025 -4.900 1.00 29.49 ? 4 US4 A C6 1 HETATM 79 O O2 . US4 A 1 4 ? 2.037 7.510 -6.189 1.00 29.23 ? 4 US4 A O2 1 HETATM 80 O "O3'" . US4 A 1 4 ? -0.437 12.208 -4.300 1.00 37.32 ? 4 US4 A "O3'" 1 HETATM 81 C "C7'" . US4 A 1 4 ? -0.720 11.942 -2.914 1.00 32.43 ? 4 US4 A "C7'" 1 HETATM 82 O "O8'" . US4 A 1 4 ? -1.120 10.577 -2.822 1.00 34.55 ? 4 US4 A "O8'" 1 HETATM 83 C "C9'" . US4 A 1 4 ? -2.442 10.232 -3.232 1.00 32.96 ? 4 US4 A "C9'" 1 HETATM 84 C "CU'" . US4 A 1 4 ? -2.629 8.746 -3.203 1.00 29.78 ? 4 US4 A "CU'" 1 HETATM 85 C "CY'" . US4 A 1 4 ? -2.534 8.157 -1.827 1.00 31.30 ? 4 US4 A "CY'" 1 HETATM 86 O "OZ'" . US4 A 1 4 ? -3.755 8.443 -1.128 1.00 35.64 ? 4 US4 A "OZ'" 1 HETATM 87 C "CX'" . US4 A 1 4 ? -2.359 6.704 -2.144 1.00 32.51 ? 4 US4 A "CX'" 1 HETATM 88 C "CW'" . US4 A 1 4 ? -1.390 6.856 -3.334 1.00 33.31 ? 4 US4 A "CW'" 1 HETATM 89 O "OV'" . US4 A 1 4 ? -1.590 8.138 -3.939 1.00 30.39 ? 4 US4 A "OV'" 1 HETATM 90 N N19 . US4 A 1 4 ? 0.042 6.851 -2.850 1.00 29.94 ? 4 US4 A N19 1 HETATM 91 C C14 . US4 A 1 4 ? 0.720 5.740 -2.643 1.00 29.12 ? 4 US4 A C14 1 HETATM 92 N N13 . US4 A 1 4 ? 0.356 4.451 -2.766 1.00 28.63 ? 4 US4 A N13 1 HETATM 93 C C12 . US4 A 1 4 ? 1.261 3.520 -2.459 1.00 29.22 ? 4 US4 A C12 1 HETATM 94 N N11 . US4 A 1 4 ? 2.493 3.817 -2.053 1.00 28.72 ? 4 US4 A N11 1 HETATM 95 C C16 . US4 A 1 4 ? 2.888 5.100 -1.929 1.00 29.00 ? 4 US4 A C16 1 HETATM 96 N N16 . US4 A 1 4 ? 4.149 5.395 -1.504 1.00 26.45 ? 4 US4 A N16 1 HETATM 97 C C15 . US4 A 1 4 ? 1.966 6.111 -2.204 1.00 27.77 ? 4 US4 A C15 1 HETATM 98 N N17 . US4 A 1 4 ? 1.990 7.454 -2.201 1.00 25.81 ? 4 US4 A N17 1 HETATM 99 C C18 . US4 A 1 4 ? 0.790 7.889 -2.614 1.00 27.39 ? 4 US4 A C18 1 HETATM 100 N N1 . OMU A 1 5 ? -0.698 4.393 1.146 1.00 31.04 ? 6 OMU A N1 1 HETATM 101 C C2 . OMU A 1 5 ? 0.377 3.592 1.383 1.00 30.66 ? 6 OMU A C2 1 HETATM 102 N N3 . OMU A 1 5 ? 1.569 4.247 1.420 1.00 28.53 ? 6 OMU A N3 1 HETATM 103 C C4 . OMU A 1 5 ? 1.754 5.599 1.266 1.00 29.98 ? 6 OMU A C4 1 HETATM 104 C C5 . OMU A 1 5 ? 0.585 6.405 1.038 1.00 28.53 ? 6 OMU A C5 1 HETATM 105 C C6 . OMU A 1 5 ? -0.590 5.772 0.980 1.00 30.65 ? 6 OMU A C6 1 HETATM 106 O O2 . OMU A 1 5 ? 0.268 2.382 1.544 1.00 32.50 ? 6 OMU A O2 1 HETATM 107 O O4 . OMU A 1 5 ? 2.885 6.021 1.342 1.00 30.31 ? 6 OMU A O4 1 HETATM 108 C "C1'" . OMU A 1 5 ? -2.055 3.731 1.109 1.00 36.70 ? 6 OMU A "C1'" 1 HETATM 109 C "C2'" . OMU A 1 5 ? -2.662 3.549 2.527 1.00 37.47 ? 6 OMU A "C2'" 1 HETATM 110 O "O2'" . OMU A 1 5 ? -3.566 2.487 2.648 1.00 39.63 ? 6 OMU A "O2'" 1 HETATM 111 C CM2 . OMU A 1 5 ? -3.094 1.181 2.333 1.00 38.28 ? 6 OMU A CM2 1 HETATM 112 C "C3'" . OMU A 1 5 ? -3.406 4.844 2.633 1.00 39.30 ? 6 OMU A "C3'" 1 HETATM 113 C "C4'" . OMU A 1 5 ? -4.044 4.877 1.283 1.00 38.07 ? 6 OMU A "C4'" 1 HETATM 114 O "O3'" . OMU A 1 5 ? -4.444 4.776 3.600 1.00 44.61 ? 6 OMU A "O3'" 1 HETATM 115 O "O4'" . OMU A 1 5 ? -2.934 4.605 0.424 1.00 38.89 ? 6 OMU A "O4'" 1 HETATM 116 C "C5'" . OMU A 1 5 ? -4.597 6.200 0.926 1.00 37.49 ? 6 OMU A "C5'" 1 HETATM 117 O "O5'" . OMU A 1 5 ? -3.617 7.092 0.994 1.00 36.90 ? 6 OMU A "O5'" 1 HETATM 118 P P . OMU A 1 5 ? -3.773 8.539 0.426 1.00 36.93 ? 6 OMU A P 1 HETATM 119 O OP1 . OMU A 1 5 ? -5.105 9.012 0.743 1.00 42.19 ? 6 OMU A OP1 1 HETATM 120 O OP2 . OMU A 1 5 ? -2.741 9.499 0.898 1.00 35.44 ? 6 OMU A OP2 1 ATOM 121 P P . DA A 1 6 ? -4.268 5.556 4.982 1.00 42.25 ? 7 DA A P 1 ATOM 122 O OP1 . DA A 1 6 ? -5.623 5.519 5.610 1.00 43.85 ? 7 DA A OP1 1 ATOM 123 O OP2 . DA A 1 6 ? -3.601 6.851 4.936 1.00 39.34 ? 7 DA A OP2 1 ATOM 124 O "O5'" . DA A 1 6 ? -3.270 4.625 5.810 1.00 40.30 ? 7 DA A "O5'" 1 ATOM 125 C "C5'" . DA A 1 6 ? -3.650 3.273 6.019 1.00 42.03 ? 7 DA A "C5'" 1 ATOM 126 C "C4'" . DA A 1 6 ? -2.488 2.396 6.407 1.00 40.97 ? 7 DA A "C4'" 1 ATOM 127 O "O4'" . DA A 1 6 ? -1.519 2.262 5.308 1.00 42.04 ? 7 DA A "O4'" 1 ATOM 128 C "C3'" . DA A 1 6 ? -1.710 2.929 7.605 1.00 40.20 ? 7 DA A "C3'" 1 ATOM 129 O "O3'" . DA A 1 6 ? -2.353 2.596 8.857 1.00 41.31 ? 7 DA A "O3'" 1 ATOM 130 C "C2'" . DA A 1 6 ? -0.410 2.177 7.425 1.00 40.28 ? 7 DA A "C2'" 1 ATOM 131 C "C1'" . DA A 1 6 ? -0.219 2.245 5.906 1.00 37.90 ? 7 DA A "C1'" 1 ATOM 132 N N9 . DA A 1 6 ? 0.562 3.381 5.434 1.00 34.41 ? 7 DA A N9 1 ATOM 133 C C8 . DA A 1 6 ? 0.132 4.585 5.003 1.00 30.20 ? 7 DA A C8 1 ATOM 134 N N7 . DA A 1 6 ? 1.123 5.354 4.629 1.00 31.34 ? 7 DA A N7 1 ATOM 135 C C5 . DA A 1 6 ? 2.262 4.592 4.882 1.00 29.27 ? 7 DA A C5 1 ATOM 136 C C6 . DA A 1 6 ? 3.641 4.812 4.694 1.00 28.07 ? 7 DA A C6 1 ATOM 137 N N6 . DA A 1 6 ? 4.179 5.930 4.198 1.00 30.78 ? 7 DA A N6 1 ATOM 138 N N1 . DA A 1 6 ? 4.454 3.817 5.050 1.00 27.41 ? 7 DA A N1 1 ATOM 139 C C2 . DA A 1 6 ? 3.966 2.727 5.560 1.00 27.26 ? 7 DA A C2 1 ATOM 140 N N3 . DA A 1 6 ? 2.686 2.371 5.714 1.00 32.02 ? 7 DA A N3 1 ATOM 141 C C4 . DA A 1 6 ? 1.908 3.385 5.353 1.00 29.74 ? 7 DA A C4 1 ATOM 142 P P . DC A 1 7 ? -2.145 3.523 10.090 1.00 40.27 ? 8 DC A P 1 ATOM 143 O OP1 . DC A 1 7 ? -3.157 3.122 11.112 1.00 42.77 ? 8 DC A OP1 1 ATOM 144 O OP2 . DC A 1 7 ? -2.029 4.904 9.682 1.00 39.51 ? 8 DC A OP2 1 ATOM 145 O "O5'" . DC A 1 7 ? -0.732 3.119 10.644 1.00 37.47 ? 8 DC A "O5'" 1 ATOM 146 C "C5'" . DC A 1 7 ? -0.528 1.808 11.068 1.00 33.82 ? 8 DC A "C5'" 1 ATOM 147 C "C4'" . DC A 1 7 ? 0.926 1.562 11.288 1.00 35.66 ? 8 DC A "C4'" 1 ATOM 148 O "O4'" . DC A 1 7 ? 1.587 1.537 9.991 1.00 35.56 ? 8 DC A "O4'" 1 ATOM 149 C "C3'" . DC A 1 7 ? 1.742 2.532 12.082 1.00 37.77 ? 8 DC A "C3'" 1 ATOM 150 O "O3'" . DC A 1 7 ? 1.649 2.241 13.510 1.00 43.07 ? 8 DC A "O3'" 1 ATOM 151 C "C2'" . DC A 1 7 ? 3.136 2.215 11.586 1.00 33.95 ? 8 DC A "C2'" 1 ATOM 152 C "C1'" . DC A 1 7 ? 2.909 2.006 10.095 1.00 33.79 ? 8 DC A "C1'" 1 ATOM 153 N N1 . DC A 1 7 ? 3.017 3.311 9.358 1.00 32.18 ? 8 DC A N1 1 ATOM 154 C C2 . DC A 1 7 ? 4.273 3.754 8.962 1.00 30.99 ? 8 DC A C2 1 ATOM 155 O O2 . DC A 1 7 ? 5.265 3.070 9.187 1.00 31.74 ? 8 DC A O2 1 ATOM 156 N N3 . DC A 1 7 ? 4.387 4.924 8.300 1.00 30.50 ? 8 DC A N3 1 ATOM 157 C C4 . DC A 1 7 ? 3.323 5.667 8.077 1.00 29.88 ? 8 DC A C4 1 ATOM 158 N N4 . DC A 1 7 ? 3.555 6.815 7.448 1.00 29.96 ? 8 DC A N4 1 ATOM 159 C C5 . DC A 1 7 ? 2.016 5.275 8.508 1.00 29.11 ? 8 DC A C5 1 ATOM 160 C C6 . DC A 1 7 ? 1.924 4.089 9.133 1.00 31.77 ? 8 DC A C6 1 ATOM 161 P P . DG A 1 8 ? 2.026 3.413 14.513 1.00 41.94 ? 9 DG A P 1 ATOM 162 O OP1 . DG A 1 8 ? 1.531 2.785 15.759 1.00 44.77 ? 9 DG A OP1 1 ATOM 163 O OP2 . DG A 1 8 ? 1.373 4.684 14.089 1.00 42.43 ? 9 DG A OP2 1 ATOM 164 O "O5'" . DG A 1 8 ? 3.612 3.576 14.583 1.00 35.44 ? 9 DG A "O5'" 1 ATOM 165 C "C5'" . DG A 1 8 ? 4.436 2.493 14.836 1.00 32.58 ? 9 DG A "C5'" 1 ATOM 166 C "C4'" . DG A 1 8 ? 5.810 2.943 14.637 1.00 33.20 ? 9 DG A "C4'" 1 ATOM 167 O "O4'" . DG A 1 8 ? 5.772 3.307 13.288 1.00 37.94 ? 9 DG A "O4'" 1 ATOM 168 C "C3'" . DG A 1 8 ? 6.002 4.307 15.250 1.00 39.02 ? 9 DG A "C3'" 1 ATOM 169 O "O3'" . DG A 1 8 ? 6.326 4.077 16.542 1.00 42.29 ? 9 DG A "O3'" 1 ATOM 170 C "C2'" . DG A 1 8 ? 7.228 4.770 14.500 1.00 38.97 ? 9 DG A "C2'" 1 ATOM 171 C "C1'" . DG A 1 8 ? 6.721 4.388 13.146 1.00 36.09 ? 9 DG A "C1'" 1 ATOM 172 N N9 . DG A 1 8 ? 6.085 5.456 12.326 1.00 33.71 ? 9 DG A N9 1 ATOM 173 C C8 . DG A 1 8 ? 4.766 5.608 12.063 1.00 30.44 ? 9 DG A C8 1 ATOM 174 N N7 . DG A 1 8 ? 4.554 6.570 11.227 1.00 29.99 ? 9 DG A N7 1 ATOM 175 C C5 . DG A 1 8 ? 5.809 7.058 10.943 1.00 28.34 ? 9 DG A C5 1 ATOM 176 C C6 . DG A 1 8 ? 6.232 8.125 10.112 1.00 27.16 ? 9 DG A C6 1 ATOM 177 O O6 . DG A 1 8 ? 5.580 8.861 9.431 1.00 28.75 ? 9 DG A O6 1 ATOM 178 N N1 . DG A 1 8 ? 7.592 8.271 10.083 1.00 26.81 ? 9 DG A N1 1 ATOM 179 C C2 . DG A 1 8 ? 8.482 7.499 10.802 1.00 28.88 ? 9 DG A C2 1 ATOM 180 N N2 . DG A 1 8 ? 9.756 7.809 10.619 1.00 29.02 ? 9 DG A N2 1 ATOM 181 N N3 . DG A 1 8 ? 8.134 6.479 11.591 1.00 29.68 ? 9 DG A N3 1 ATOM 182 C C4 . DG A 1 8 ? 6.777 6.349 11.605 1.00 27.27 ? 9 DG A C4 1 ATOM 183 P P . DC A 1 9 ? 6.713 5.263 17.555 1.00 49.98 ? 10 DC A P 1 ATOM 184 O OP1 . DC A 1 9 ? 7.338 4.485 18.662 1.00 49.64 ? 10 DC A OP1 1 ATOM 185 O OP2 . DC A 1 9 ? 5.475 6.121 17.614 1.00 48.24 ? 10 DC A OP2 1 ATOM 186 O "O5'" . DC A 1 9 ? 7.945 6.146 17.011 1.00 45.27 ? 10 DC A "O5'" 1 ATOM 187 C "C5'" . DC A 1 9 ? 9.368 5.769 16.869 1.00 45.87 ? 10 DC A "C5'" 1 ATOM 188 C "C4'" . DC A 1 9 ? 10.052 7.020 16.276 1.00 45.40 ? 10 DC A "C4'" 1 ATOM 189 O "O4'" . DC A 1 9 ? 9.556 7.208 14.931 1.00 42.04 ? 10 DC A "O4'" 1 ATOM 190 C "C3'" . DC A 1 9 ? 9.731 8.400 16.902 1.00 45.34 ? 10 DC A "C3'" 1 ATOM 191 O "O3'" . DC A 1 9 ? 10.486 8.691 18.082 1.00 47.88 ? 10 DC A "O3'" 1 ATOM 192 C "C2'" . DC A 1 9 ? 10.091 9.378 15.799 1.00 41.15 ? 10 DC A "C2'" 1 ATOM 193 C "C1'" . DC A 1 9 ? 9.599 8.609 14.574 1.00 40.22 ? 10 DC A "C1'" 1 ATOM 194 N N1 . DC A 1 9 ? 8.305 9.148 14.011 1.00 32.76 ? 10 DC A N1 1 ATOM 195 C C2 . DC A 1 9 ? 8.445 10.218 13.073 1.00 30.84 ? 10 DC A C2 1 ATOM 196 O O2 . DC A 1 9 ? 9.584 10.553 12.822 1.00 31.58 ? 10 DC A O2 1 ATOM 197 N N3 . DC A 1 9 ? 7.357 10.714 12.497 1.00 31.40 ? 10 DC A N3 1 ATOM 198 C C4 . DC A 1 9 ? 6.170 10.253 12.915 1.00 29.54 ? 10 DC A C4 1 ATOM 199 N N4 . DC A 1 9 ? 5.032 10.659 12.441 1.00 31.16 ? 10 DC A N4 1 ATOM 200 C C5 . DC A 1 9 ? 6.013 9.206 13.850 1.00 32.21 ? 10 DC A C5 1 ATOM 201 C C6 . DC A 1 9 ? 7.109 8.726 14.396 1.00 31.99 ? 10 DC A C6 1 HETATM 202 O O . HOH B 2 . ? -6.550 2.458 3.703 1.00 59.23 ? 5 HOH A O 1 HETATM 203 O O . HOH B 2 . ? 9.430 13.470 -10.566 1.00 45.34 ? 11 HOH A O 1 HETATM 204 O O . HOH B 2 . ? 10.026 8.308 -4.105 1.00 34.47 ? 12 HOH A O 1 HETATM 205 O O . HOH B 2 . ? 0.634 15.565 -2.318 1.00 49.76 ? 13 HOH A O 1 HETATM 206 O O . HOH B 2 . ? -4.214 13.421 -1.603 1.00 44.69 ? 15 HOH A O 1 HETATM 207 O O . HOH B 2 . ? 2.859 -0.108 7.566 1.00 45.91 ? 16 HOH A O 1 HETATM 208 O O . HOH B 2 . ? -5.513 6.650 8.979 1.00 55.65 ? 17 HOH A O 1 HETATM 209 O O . HOH B 2 . ? 1.987 7.826 10.818 1.00 36.83 ? 18 HOH A O 1 HETATM 210 O O . HOH B 2 . ? -2.786 0.853 14.577 1.00 52.40 ? 20 HOH A O 1 HETATM 211 O O . HOH B 2 . ? 0.898 7.907 4.246 1.00 39.37 ? 21 HOH A O 1 HETATM 212 O O . HOH B 2 . ? 21.130 6.701 -4.969 0.50 25.36 ? 22 HOH A O 1 HETATM 213 O O . HOH B 2 . ? 3.795 10.788 -10.439 1.00 42.32 ? 23 HOH A O 1 HETATM 214 O O . HOH B 2 . ? 3.360 17.531 -6.843 1.00 58.22 ? 24 HOH A O 1 HETATM 215 O O . HOH B 2 . ? -0.287 5.613 -6.222 1.00 32.80 ? 25 HOH A O 1 HETATM 216 O O . HOH B 2 . ? 19.904 5.787 -7.795 0.50 25.76 ? 26 HOH A O 1 HETATM 217 O O . HOH B 2 . ? 13.446 12.582 -11.663 1.00 40.32 ? 27 HOH A O 1 HETATM 218 O O . HOH B 2 . ? 8.561 10.736 -1.240 1.00 48.86 ? 28 HOH A O 1 HETATM 219 O O . HOH B 2 . ? 3.868 9.005 -0.828 1.00 23.82 ? 29 HOH A O 1 HETATM 220 O O . HOH B 2 . ? 1.222 8.746 7.111 1.00 51.45 ? 30 HOH A O 1 HETATM 221 O O . HOH B 2 . ? 2.584 7.397 14.739 1.00 42.43 ? 31 HOH A O 1 HETATM 222 O O . HOH B 2 . ? 12.486 11.297 14.937 1.00 56.05 ? 32 HOH A O 1 HETATM 223 O O . HOH B 2 . ? 12.250 13.139 -0.448 0.50 38.59 ? 33 HOH A O 1 HETATM 224 O O . HOH B 2 . ? 8.119 7.255 -2.268 1.00 43.81 ? 34 HOH A O 1 # loop_ _atom_site_anisotrop.id _atom_site_anisotrop.type_symbol _atom_site_anisotrop.pdbx_label_atom_id _atom_site_anisotrop.pdbx_label_alt_id _atom_site_anisotrop.pdbx_label_comp_id _atom_site_anisotrop.pdbx_label_asym_id _atom_site_anisotrop.pdbx_label_seq_id _atom_site_anisotrop.pdbx_PDB_ins_code _atom_site_anisotrop.U[1][1] _atom_site_anisotrop.U[2][2] _atom_site_anisotrop.U[3][3] _atom_site_anisotrop.U[1][2] _atom_site_anisotrop.U[1][3] _atom_site_anisotrop.U[2][3] _atom_site_anisotrop.pdbx_auth_seq_id _atom_site_anisotrop.pdbx_auth_comp_id _atom_site_anisotrop.pdbx_auth_asym_id _atom_site_anisotrop.pdbx_auth_atom_id 1 O "O5'" . DG A 1 ? 0.3948 0.4800 0.4620 -0.0405 -0.0488 0.0065 1 DG A "O5'" 2 C "C5'" . DG A 1 ? 0.4127 0.4377 0.4602 -0.0496 -0.0148 0.0044 1 DG A "C5'" 3 C "C4'" . DG A 1 ? 0.3900 0.4064 0.4247 -0.0292 -0.0110 -0.0065 1 DG A "C4'" 4 O "O4'" . DG A 1 ? 0.3883 0.4135 0.4673 -0.0294 -0.0210 0.0090 1 DG A "O4'" 5 C "C3'" . DG A 1 ? 0.4021 0.4421 0.4362 -0.0260 -0.0108 -0.0100 1 DG A "C3'" 6 O "O3'" . DG A 1 ? 0.4356 0.4546 0.4653 -0.0264 -0.0162 -0.0129 1 DG A "O3'" 7 C "C2'" . DG A 1 ? 0.3553 0.3917 0.4417 -0.0062 -0.0087 0.0098 1 DG A "C2'" 8 C "C1'" . DG A 1 ? 0.4044 0.4020 0.4189 -0.0293 -0.0087 0.0005 1 DG A "C1'" 9 N N9 . DG A 1 ? 0.3615 0.4180 0.3993 -0.0281 -0.0049 0.0106 1 DG A N9 10 C C8 . DG A 1 ? 0.3826 0.4095 0.3722 -0.0419 -0.0195 -0.0093 1 DG A C8 11 N N7 . DG A 1 ? 0.3762 0.4303 0.3845 -0.0324 0.0032 0.0117 1 DG A N7 12 C C5 . DG A 1 ? 0.3837 0.4148 0.4099 -0.0154 0.0109 -0.0013 1 DG A C5 13 C C6 . DG A 1 ? 0.3725 0.4085 0.3575 -0.0032 0.0041 0.0046 1 DG A C6 14 O O6 . DG A 1 ? 0.3928 0.4845 0.4252 -0.0257 -0.0128 0.0095 1 DG A O6 15 N N1 . DG A 1 ? 0.3429 0.4102 0.3459 0.0193 0.0506 -0.0134 1 DG A N1 16 C C2 . DG A 1 ? 0.3444 0.3985 0.3377 -0.0156 0.0255 0.0040 1 DG A C2 17 N N2 . DG A 1 ? 0.3648 0.4385 0.4060 0.0452 0.0740 -0.0117 1 DG A N2 18 N N3 . DG A 1 ? 0.3436 0.4059 0.3373 -0.0172 0.0109 0.0032 1 DG A N3 19 C C4 . DG A 1 ? 0.3331 0.3803 0.3588 -0.0252 0.0185 -0.0099 1 DG A C4 20 P P . DC A 2 ? 0.4441 0.5083 0.5146 -0.0205 0.0037 -0.0217 2 DC A P 21 O OP1 . DC A 2 ? 0.4006 0.5279 0.5477 0.0165 0.0249 -0.0353 2 DC A OP1 22 O OP2 . DC A 2 ? 0.4615 0.5165 0.4571 -0.0044 0.0280 -0.0102 2 DC A OP2 23 O "O5'" . DC A 2 ? 0.4221 0.4843 0.5039 -0.0199 0.0098 0.0098 2 DC A "O5'" 24 C "C5'" . DC A 2 ? 0.4580 0.4994 0.5078 -0.0187 -0.0026 0.0121 2 DC A "C5'" 25 C "C4'" . DC A 2 ? 0.4436 0.5015 0.5101 -0.0058 -0.0025 -0.0073 2 DC A "C4'" 26 O "O4'" . DC A 2 ? 0.3890 0.4948 0.5151 -0.0147 0.0028 0.0054 2 DC A "O4'" 27 C "C3'" . DC A 2 ? 0.4512 0.5157 0.5071 -0.0137 -0.0078 -0.0060 2 DC A "C3'" 28 O "O3'" . DC A 2 ? 0.5062 0.5266 0.5680 -0.0256 -0.0150 -0.0235 2 DC A "O3'" 29 C "C2'" . DC A 2 ? 0.4659 0.5027 0.4976 -0.0030 -0.0028 -0.0050 2 DC A "C2'" 30 C "C1'" . DC A 2 ? 0.4076 0.4446 0.4652 -0.0073 -0.0149 0.0077 2 DC A "C1'" 31 N N1 . DC A 2 ? 0.3720 0.4660 0.4221 -0.0160 0.0135 -0.0008 2 DC A N1 32 C C2 . DC A 2 ? 0.3351 0.4145 0.3498 0.0009 0.0325 0.0027 2 DC A C2 33 O O2 . DC A 2 ? 0.3759 0.4679 0.4657 -0.0012 0.0331 0.0066 2 DC A O2 34 N N3 . DC A 2 ? 0.3282 0.4240 0.3832 -0.0117 0.0602 -0.0042 2 DC A N3 35 C C4 . DC A 2 ? 0.3172 0.3691 0.3588 0.0107 0.0126 0.0043 2 DC A C4 36 N N4 . DC A 2 ? 0.3108 0.3823 0.3778 -0.0226 -0.0011 -0.0264 2 DC A N4 37 C C5 . DC A 2 ? 0.3855 0.4125 0.3941 -0.0071 0.0421 -0.0162 2 DC A C5 38 C C6 . DC A 2 ? 0.3455 0.3733 0.3913 -0.0042 0.0459 0.0269 2 DC A C6 39 P P . DG A 3 ? 0.5415 0.5502 0.5570 0.0000 0.0102 -0.0484 3 DG A P 40 O OP1 . DG A 3 ? 0.5505 0.5197 0.5930 -0.0216 0.0103 -0.0150 3 DG A OP1 41 O OP2 . DG A 3 ? 0.4840 0.4794 0.5053 -0.0160 0.0153 -0.0260 3 DG A OP2 42 O "O5'" . DG A 3 ? 0.4870 0.4757 0.5418 -0.0217 -0.0032 -0.0110 3 DG A "O5'" 43 C "C5'" . DG A 3 ? 0.4701 0.4488 0.4981 -0.0045 0.0073 -0.0069 3 DG A "C5'" 44 C "C4'" . DG A 3 ? 0.4581 0.4243 0.4695 0.0080 0.0045 -0.0044 3 DG A "C4'" 45 O "O4'" . DG A 3 ? 0.4406 0.4054 0.4623 0.0130 0.0104 0.0036 3 DG A "O4'" 46 C "C3'" . DG A 3 ? 0.4487 0.4246 0.4581 0.0146 0.0008 0.0107 3 DG A "C3'" 47 O "O3'" . DG A 3 ? 0.4714 0.4209 0.4620 0.0046 -0.0075 -0.0072 3 DG A "O3'" 48 C "C2'" . DG A 3 ? 0.4167 0.4529 0.4407 0.0213 0.0005 -0.0015 3 DG A "C2'" 49 C "C1'" . DG A 3 ? 0.4247 0.4333 0.4698 0.0145 0.0117 0.0044 3 DG A "C1'" 50 N N9 . DG A 3 ? 0.3618 0.3781 0.4034 0.0160 0.0207 -0.0019 3 DG A N9 51 C C8 . DG A 3 ? 0.3307 0.3575 0.3778 0.0048 0.0406 0.0086 3 DG A C8 52 N N7 . DG A 3 ? 0.3325 0.3445 0.3583 -0.0164 0.0321 0.0131 3 DG A N7 53 C C5 . DG A 3 ? 0.3224 0.3692 0.3068 0.0051 0.0300 0.0215 3 DG A C5 54 C C6 . DG A 3 ? 0.3057 0.3662 0.3056 0.0081 0.0274 -0.0151 3 DG A C6 55 O O6 . DG A 3 ? 0.3480 0.3685 0.3546 0.0447 0.0357 -0.0020 3 DG A O6 56 N N1 . DG A 3 ? 0.3170 0.3966 0.2933 0.0182 0.0298 -0.0136 3 DG A N1 57 C C2 . DG A 3 ? 0.3044 0.3658 0.3058 -0.0127 0.0349 -0.0097 3 DG A C2 58 N N2 . DG A 3 ? 0.3265 0.4446 0.3191 0.0318 0.0187 -0.0123 3 DG A N2 59 N N3 . DG A 3 ? 0.3817 0.3896 0.3462 -0.0061 0.0161 -0.0305 3 DG A N3 60 C C4 . DG A 3 ? 0.3269 0.4084 0.3567 0.0225 0.0226 -0.0075 3 DG A C4 61 P P . US4 A 4 ? 0.4608 0.4317 0.4942 0.0346 0.0114 -0.0142 4 US4 A P 62 O O1P . US4 A 4 ? 0.4318 0.4103 0.4391 0.0144 0.0124 -0.0130 4 US4 A O1P 63 O O2P . US4 A 4 ? 0.5123 0.4526 0.5018 0.0010 0.0245 0.0039 4 US4 A O2P 64 O "O5'" . US4 A 4 ? 0.4819 0.4476 0.4957 0.0347 0.0055 0.0074 4 US4 A "O5'" 65 C "C5'" . US4 A 4 ? 0.4678 0.4464 0.4909 0.0226 -0.0068 -0.0043 4 US4 A "C5'" 66 C "C4'" . US4 A 4 ? 0.4517 0.4582 0.4475 0.0193 0.0143 -0.0062 4 US4 A "C4'" 67 C "C3'" . US4 A 4 ? 0.4087 0.4403 0.4580 0.0237 0.0030 0.0042 4 US4 A "C3'" 68 C "C2'" . US4 A 4 ? 0.3645 0.4615 0.4164 0.0200 0.0034 -0.0210 4 US4 A "C2'" 69 C "C1'" . US4 A 4 ? 0.3758 0.4449 0.3863 -0.0078 -0.0024 0.0164 4 US4 A "C1'" 70 O "O4'" . US4 A 4 ? 0.4074 0.4169 0.4588 0.0275 -0.0035 0.0096 4 US4 A "O4'" 71 N N1 . US4 A 4 ? 0.3593 0.3731 0.3926 0.0178 0.0180 -0.0059 4 US4 A N1 72 C C2 . US4 A 4 ? 0.3619 0.3801 0.3409 0.0043 0.0220 0.0083 4 US4 A C2 73 N N3 . US4 A 4 ? 0.3384 0.4069 0.3121 0.0089 0.0725 -0.0018 4 US4 A N3 74 C C4 . US4 A 4 ? 0.3256 0.3732 0.2880 0.0085 0.0404 -0.0018 4 US4 A C4 75 O O4 . US4 A 4 ? 0.3246 0.4106 0.3663 0.0291 0.0323 0.0334 4 US4 A O4 76 C C5 . US4 A 4 ? 0.3311 0.3594 0.3201 0.0029 0.0239 0.0079 4 US4 A C5 77 C C5M . US4 A 4 ? 0.3312 0.3351 0.3467 -0.0137 0.0191 0.0084 4 US4 A C5M 78 C C6 . US4 A 4 ? 0.3760 0.3603 0.3840 0.0040 0.0287 -0.0029 4 US4 A C6 79 O O2 . US4 A 4 ? 0.3703 0.3883 0.3519 -0.0098 0.0349 -0.0238 4 US4 A O2 80 O "O3'" . US4 A 4 ? 0.4481 0.5010 0.4686 0.0457 0.0069 -0.0045 4 US4 A "O3'" 81 C "C7'" . US4 A 4 ? 0.3665 0.4312 0.4343 0.0297 -0.0015 0.0095 4 US4 A "C7'" 82 O "O8'" . US4 A 4 ? 0.3975 0.4545 0.4605 0.0491 0.0094 0.0174 4 US4 A "O8'" 83 C "C9'" . US4 A 4 ? 0.3924 0.4360 0.4236 0.0172 -0.0353 0.0058 4 US4 A "C9'" 84 C "CU'" . US4 A 4 ? 0.3507 0.4171 0.3635 0.0294 -0.0021 -0.0094 4 US4 A "CU'" 85 C "CY'" . US4 A 4 ? 0.3485 0.4373 0.4035 0.0171 0.0080 -0.0099 4 US4 A "CY'" 86 O "OZ'" . US4 A 4 ? 0.3666 0.5267 0.4605 0.0154 0.0080 -0.0113 4 US4 A "OZ'" 87 C "CX'" . US4 A 4 ? 0.3726 0.4404 0.4223 0.0113 0.0125 -0.0075 4 US4 A "CX'" 88 C "CW'" . US4 A 4 ? 0.3841 0.4543 0.4272 0.0020 -0.0063 0.0030 4 US4 A "CW'" 89 O "OV'" . US4 A 4 ? 0.3518 0.4259 0.3770 0.0196 -0.0292 0.0132 4 US4 A "OV'" 90 N N19 . US4 A 4 ? 0.3705 0.4054 0.3616 0.0114 -0.0142 -0.0004 4 US4 A N19 91 C C14 . US4 A 4 ? 0.3591 0.3985 0.3486 0.0143 -0.0009 -0.0042 4 US4 A C14 92 N N13 . US4 A 4 ? 0.3897 0.3721 0.3261 0.0173 0.0099 0.0218 4 US4 A N13 93 C C12 . US4 A 4 ? 0.3818 0.3856 0.3427 0.0201 0.0101 0.0084 4 US4 A C12 94 N N11 . US4 A 4 ? 0.3865 0.3656 0.3388 -0.0107 0.0152 -0.0033 4 US4 A N11 95 C C16 . US4 A 4 ? 0.3758 0.3889 0.3370 0.0015 0.0027 -0.0017 4 US4 A C16 96 N N16 . US4 A 4 ? 0.3175 0.3666 0.3209 0.0279 0.0239 0.0173 4 US4 A N16 97 C C15 . US4 A 4 ? 0.3542 0.3676 0.3333 0.0066 0.0031 0.0003 4 US4 A C15 98 N N17 . US4 A 4 ? 0.2930 0.3572 0.3304 0.0222 0.0176 -0.0087 4 US4 A N17 99 C C18 . US4 A 4 ? 0.3293 0.3749 0.3361 0.0159 0.0056 0.0011 4 US4 A C18 100 N N1 . OMU A 5 ? 0.4278 0.4214 0.3302 0.0000 0.0132 0.0014 6 OMU A N1 101 C C2 . OMU A 5 ? 0.4160 0.4090 0.3400 -0.0037 0.0049 -0.0095 6 OMU A C2 102 N N3 . OMU A 5 ? 0.4038 0.4090 0.2710 -0.0071 0.0175 -0.0033 6 OMU A N3 103 C C4 . OMU A 5 ? 0.3943 0.4017 0.3430 -0.0080 0.0126 0.0004 6 OMU A C4 104 C C5 . OMU A 5 ? 0.3838 0.3770 0.3229 -0.0059 0.0164 0.0131 6 OMU A C5 105 C C6 . OMU A 5 ? 0.4207 0.4016 0.3422 -0.0072 0.0037 0.0002 6 OMU A C6 106 O O2 . OMU A 5 ? 0.4299 0.4144 0.3904 -0.0077 -0.0014 0.0083 6 OMU A O2 107 O O4 . OMU A 5 ? 0.3434 0.4384 0.3697 0.0268 -0.0003 0.0131 6 OMU A O4 108 C "C1'" . OMU A 5 ? 0.4623 0.4844 0.4475 -0.0157 0.0003 -0.0020 6 OMU A "C1'" 109 C "C2'" . OMU A 5 ? 0.4746 0.4977 0.4512 -0.0250 0.0091 0.0013 6 OMU A "C2'" 110 O "O2'" . OMU A 5 ? 0.4713 0.5209 0.5135 -0.0203 0.0004 0.0089 6 OMU A "O2'" 111 C CM2 . OMU A 5 ? 0.4797 0.5058 0.4687 -0.0119 0.0276 0.0047 6 OMU A CM2 112 C "C3'" . OMU A 5 ? 0.4827 0.5434 0.4672 0.0077 0.0116 0.0018 6 OMU A "C3'" 113 C "C4'" . OMU A 5 ? 0.4635 0.5099 0.4728 0.0016 -0.0098 -0.0169 6 OMU A "C4'" 114 O "O3'" . OMU A 5 ? 0.5061 0.6174 0.5712 -0.0061 0.0100 0.0186 6 OMU A "O3'" 115 O "O4'" . OMU A 5 ? 0.4835 0.5407 0.4534 -0.0221 -0.0122 0.0394 6 OMU A "O4'" 116 C "C5'" . OMU A 5 ? 0.4481 0.5168 0.4594 -0.0057 -0.0129 -0.0006 6 OMU A "C5'" 117 O "O5'" . OMU A 5 ? 0.3951 0.5384 0.4682 0.0060 0.0053 0.0018 6 OMU A "O5'" 118 P P . OMU A 5 ? 0.3848 0.5464 0.4720 0.0390 0.0316 -0.0248 6 OMU A P 119 O OP1 . OMU A 5 ? 0.4827 0.6131 0.5070 0.0251 0.0843 0.0150 6 OMU A OP1 120 O OP2 . OMU A 5 ? 0.3860 0.5188 0.4417 0.0395 0.0805 -0.0472 6 OMU A OP2 121 P P . DA A 6 ? 0.4865 0.5950 0.5236 -0.0045 0.0464 0.0174 7 DA A P 122 O OP1 . DA A 6 ? 0.4969 0.6335 0.5357 0.0020 0.0264 0.0011 7 DA A OP1 123 O OP2 . DA A 6 ? 0.5270 0.5269 0.4407 0.0093 0.0313 0.0188 7 DA A OP2 124 O "O5'" . DA A 6 ? 0.4755 0.5438 0.5116 -0.0049 0.0442 0.0223 7 DA A "O5'" 125 C "C5'" . DA A 6 ? 0.4966 0.5398 0.5604 0.0001 0.0174 0.0078 7 DA A "C5'" 126 C "C4'" . DA A 6 ? 0.4931 0.5447 0.5185 -0.0045 0.0194 0.0093 7 DA A "C4'" 127 O "O4'" . DA A 6 ? 0.5234 0.5548 0.5188 0.0088 0.0104 -0.0032 7 DA A "O4'" 128 C "C3'" . DA A 6 ? 0.4842 0.5414 0.5015 0.0021 0.0148 0.0081 7 DA A "C3'" 129 O "O3'" . DA A 6 ? 0.4852 0.5539 0.5302 0.0030 0.0094 0.0107 7 DA A "O3'" 130 C "C2'" . DA A 6 ? 0.5150 0.5273 0.4882 0.0147 -0.0062 -0.0068 7 DA A "C2'" 131 C "C1'" . DA A 6 ? 0.4766 0.4955 0.4677 0.0025 0.0077 0.0135 7 DA A "C1'" 132 N N9 . DA A 6 ? 0.4348 0.4515 0.4208 0.0142 -0.0097 0.0012 7 DA A N9 133 C C8 . DA A 6 ? 0.3774 0.3995 0.3704 -0.0076 -0.0096 0.0065 7 DA A C8 134 N N7 . DA A 6 ? 0.3702 0.4351 0.3855 0.0055 -0.0081 -0.0216 7 DA A N7 135 C C5 . DA A 6 ? 0.3786 0.4076 0.3259 0.0118 0.0022 -0.0151 7 DA A C5 136 C C6 . DA A 6 ? 0.3507 0.3820 0.3338 0.0083 -0.0175 -0.0279 7 DA A C6 137 N N6 . DA A 6 ? 0.4043 0.4116 0.3536 0.0172 0.0196 -0.0202 7 DA A N6 138 N N1 . DA A 6 ? 0.3900 0.3337 0.3176 0.0051 0.0115 -0.0318 7 DA A N1 139 C C2 . DA A 6 ? 0.3834 0.3647 0.2877 -0.0320 0.0104 -0.0320 7 DA A C2 140 N N3 . DA A 6 ? 0.3964 0.4621 0.3579 0.0401 0.0202 0.0017 7 DA A N3 141 C C4 . DA A 6 ? 0.3962 0.3922 0.3414 0.0137 0.0080 -0.0079 7 DA A C4 142 P P . DC A 7 ? 0.4901 0.5480 0.4918 -0.0088 0.0391 0.0402 8 DC A P 143 O OP1 . DC A 7 ? 0.5124 0.5946 0.5178 0.0026 0.0284 0.0110 8 DC A OP1 144 O OP2 . DC A 7 ? 0.4910 0.5148 0.4954 0.0413 0.0529 0.0057 8 DC A OP2 145 O "O5'" . DC A 7 ? 0.4773 0.4900 0.4563 -0.0099 0.0375 0.0352 8 DC A "O5'" 146 C "C5'" . DC A 7 ? 0.4466 0.4305 0.4076 -0.0184 0.0374 0.0312 8 DC A "C5'" 147 C "C4'" . DC A 7 ? 0.4846 0.4368 0.4334 0.0024 0.0157 0.0327 8 DC A "C4'" 148 O "O4'" . DC A 7 ? 0.4701 0.4548 0.4262 -0.0002 0.0082 0.0335 8 DC A "O4'" 149 C "C3'" . DC A 7 ? 0.5137 0.4825 0.4388 0.0062 0.0126 0.0177 8 DC A "C3'" 150 O "O3'" . DC A 7 ? 0.5776 0.5652 0.4936 0.0093 0.0031 0.0369 8 DC A "O3'" 151 C "C2'" . DC A 7 ? 0.4635 0.4258 0.4004 0.0180 0.0037 0.0180 8 DC A "C2'" 152 C "C1'" . DC A 7 ? 0.4410 0.4236 0.4191 -0.0021 -0.0198 0.0159 8 DC A "C1'" 153 N N1 . DC A 7 ? 0.4279 0.4132 0.3814 -0.0018 0.0010 0.0101 8 DC A N1 154 C C2 . DC A 7 ? 0.4104 0.4072 0.3598 -0.0027 -0.0069 0.0037 8 DC A C2 155 O O2 . DC A 7 ? 0.4461 0.4016 0.3582 0.0319 0.0316 0.0178 8 DC A O2 156 N N3 . DC A 7 ? 0.4160 0.3831 0.3595 -0.0064 -0.0061 -0.0112 8 DC A N3 157 C C4 . DC A 7 ? 0.3920 0.3816 0.3614 -0.0046 -0.0079 -0.0080 8 DC A C4 158 N N4 . DC A 7 ? 0.4055 0.3667 0.3661 -0.0292 0.0173 -0.0157 8 DC A N4 159 C C5 . DC A 7 ? 0.4055 0.3659 0.3344 -0.0111 0.0096 -0.0078 8 DC A C5 160 C C6 . DC A 7 ? 0.4082 0.4175 0.3813 0.0072 -0.0052 0.0094 8 DC A C6 161 P P . DG A 8 ? 0.5845 0.5327 0.4760 0.0156 0.0196 0.0372 9 DG A P 162 O OP1 . DG A 8 ? 0.6007 0.5909 0.5093 0.0157 0.0179 0.0345 9 DG A OP1 163 O OP2 . DG A 8 ? 0.5720 0.5713 0.4689 0.0309 0.0242 0.0038 9 DG A OP2 164 O "O5'" . DG A 8 ? 0.5383 0.4055 0.4026 0.0018 0.0007 0.0301 9 DG A "O5'" 165 C "C5'" . DG A 8 ? 0.4728 0.4075 0.3576 0.0140 -0.0054 -0.0059 9 DG A "C5'" 166 C "C4'" . DG A 8 ? 0.4992 0.3779 0.3842 0.0063 -0.0043 0.0021 9 DG A "C4'" 167 O "O4'" . DG A 8 ? 0.5255 0.4488 0.4671 0.0186 0.0249 -0.0101 9 DG A "O4'" 168 C "C3'" . DG A 8 ? 0.5352 0.4629 0.4843 -0.0008 -0.0035 -0.0143 9 DG A "C3'" 169 O "O3'" . DG A 8 ? 0.6268 0.4693 0.5104 -0.0210 -0.0127 0.0085 9 DG A "O3'" 170 C "C2'" . DG A 8 ? 0.5248 0.4697 0.4859 0.0165 0.0048 0.0041 9 DG A "C2'" 171 C "C1'" . DG A 8 ? 0.4775 0.4418 0.4518 0.0174 0.0080 -0.0029 9 DG A "C1'" 172 N N9 . DG A 8 ? 0.4540 0.4154 0.4112 0.0202 0.0201 0.0014 9 DG A N9 173 C C8 . DG A 8 ? 0.4213 0.3718 0.3632 0.0331 0.0067 -0.0009 9 DG A C8 174 N N7 . DG A 8 ? 0.4193 0.3255 0.3944 0.0263 0.0223 -0.0284 9 DG A N7 175 C C5 . DG A 8 ? 0.3820 0.3194 0.3753 0.0193 0.0143 -0.0497 9 DG A C5 176 C C6 . DG A 8 ? 0.3822 0.3116 0.3381 0.0237 -0.0017 -0.0327 9 DG A C6 177 O O6 . DG A 8 ? 0.4106 0.3104 0.3712 0.0318 -0.0213 -0.0081 9 DG A O6 178 N N1 . DG A 8 ? 0.3967 0.2738 0.3480 -0.0224 -0.0150 -0.0696 9 DG A N1 179 C C2 . DG A 8 ? 0.3939 0.3249 0.3783 -0.0041 -0.0064 -0.0227 9 DG A C2 180 N N2 . DG A 8 ? 0.3868 0.3020 0.4139 0.0158 0.0199 -0.0574 9 DG A N2 181 N N3 . DG A 8 ? 0.4021 0.3520 0.3734 0.0156 0.0204 -0.0469 9 DG A N3 182 C C4 . DG A 8 ? 0.4023 0.2834 0.3502 0.0000 -0.0156 -0.0435 9 DG A C4 183 P P . DC A 9 ? 0.7036 0.6194 0.5760 -0.0143 -0.0093 -0.0444 10 DC A P 184 O OP1 . DC A 9 ? 0.7016 0.5643 0.6199 -0.0281 -0.0360 -0.0263 10 DC A OP1 185 O OP2 . DC A 9 ? 0.6474 0.6041 0.5811 -0.0104 -0.0023 -0.0294 10 DC A OP2 186 O "O5'" . DC A 9 ? 0.6382 0.5471 0.5346 -0.0241 -0.0016 -0.0386 10 DC A "O5'" 187 C "C5'" . DC A 9 ? 0.6119 0.5747 0.5560 -0.0167 -0.0207 -0.0035 10 DC A "C5'" 188 C "C4'" . DC A 9 ? 0.6294 0.5513 0.5441 -0.0054 -0.0092 -0.0049 10 DC A "C4'" 189 O "O4'" . DC A 9 ? 0.6196 0.4522 0.5256 -0.0270 -0.0183 0.0054 10 DC A "O4'" 190 C "C3'" . DC A 9 ? 0.6394 0.5225 0.5607 -0.0198 -0.0076 0.0142 10 DC A "C3'" 191 O "O3'" . DC A 9 ? 0.6726 0.5219 0.6246 -0.0174 -0.0295 0.0028 10 DC A "O3'" 192 C "C2'" . DC A 9 ? 0.6176 0.4574 0.4884 -0.0167 -0.0246 -0.0119 10 DC A "C2'" 193 C "C1'" . DC A 9 ? 0.5733 0.4534 0.5013 -0.0085 -0.0149 -0.0052 10 DC A "C1'" 194 N N1 . DC A 9 ? 0.5096 0.3378 0.3970 -0.0324 0.0064 -0.0228 10 DC A N1 195 C C2 . DC A 9 ? 0.4552 0.3472 0.3692 0.0071 0.0019 -0.0162 10 DC A C2 196 O O2 . DC A 9 ? 0.4853 0.3248 0.3896 -0.0148 0.0374 -0.0052 10 DC A O2 197 N N3 . DC A 9 ? 0.4860 0.2939 0.4132 -0.0090 0.0032 -0.0376 10 DC A N3 198 C C4 . DC A 9 ? 0.4432 0.3219 0.3570 0.0018 0.0132 -0.0489 10 DC A C4 199 N N4 . DC A 9 ? 0.4716 0.3401 0.3720 0.0161 -0.0044 -0.0318 10 DC A N4 200 C C5 . DC A 9 ? 0.4978 0.3608 0.3649 0.0152 0.0148 -0.0215 10 DC A C5 201 C C6 . DC A 9 ? 0.4433 0.3689 0.4030 0.0046 -0.0078 -0.0302 10 DC A C6 202 O O . HOH B . ? 0.7639 0.7569 0.7296 -0.0342 0.0015 0.0018 5 HOH A O 203 O O . HOH B . ? 0.5141 0.6335 0.5748 -0.0006 0.0411 0.0495 11 HOH A O 204 O O . HOH B . ? 0.3594 0.4715 0.4785 -0.0521 0.0570 0.0233 12 HOH A O 205 O O . HOH B . ? 0.6511 0.5599 0.6795 0.0517 -0.0255 0.0059 13 HOH A O 206 O O . HOH B . ? 0.5570 0.6002 0.5406 0.0063 0.0231 -0.0581 15 HOH A O 207 O O . HOH B . ? 0.6294 0.5497 0.5650 0.0116 0.0113 -0.0123 16 HOH A O 208 O O . HOH B . ? 0.6741 0.7652 0.6750 0.0064 0.0614 0.0107 17 HOH A O 209 O O . HOH B . ? 0.4870 0.4749 0.4371 0.0419 0.0064 -0.0159 18 HOH A O 210 O O . HOH B . ? 0.5951 0.6973 0.6985 -0.0161 0.0349 0.0072 20 HOH A O 211 O O . HOH B . ? 0.4924 0.5399 0.4636 0.0552 0.0113 0.0021 21 HOH A O 212 O O . HOH B . ? 0.2185 0.4034 0.3415 0.0259 0.0082 -0.0300 22 HOH A O 213 O O . HOH B . ? 0.5296 0.5101 0.5683 -0.0009 -0.0206 0.0356 23 HOH A O 214 O O . HOH B . ? 0.7294 0.7419 0.7405 0.0051 0.0099 0.0187 24 HOH A O 215 O O . HOH B . ? 0.3619 0.4737 0.4106 0.0152 -0.0095 0.0255 25 HOH A O 216 O O . HOH B . ? 0.3352 0.2957 0.3479 -0.0557 0.0172 0.0326 26 HOH A O 217 O O . HOH B . ? 0.4722 0.5062 0.5535 0.0090 0.0325 0.0261 27 HOH A O 218 O O . HOH B . ? 0.5634 0.6563 0.6366 -0.0076 -0.0133 0.0049 28 HOH A O 219 O O . HOH B . ? 0.2575 0.3927 0.2545 -0.0578 0.0366 -0.0293 29 HOH A O 220 O O . HOH B . ? 0.6928 0.6484 0.6134 0.0257 -0.0353 0.0034 30 HOH A O 221 O O . HOH B . ? 0.6055 0.5053 0.5011 -0.0210 -0.0047 -0.0301 31 HOH A O 222 O O . HOH B . ? 0.7188 0.7195 0.6911 0.0391 0.0316 -0.0309 32 HOH A O 223 O O . HOH B . ? 0.5096 0.4801 0.4763 0.0255 0.0300 -0.0356 33 HOH A O 224 O O . HOH B . ? 0.4691 0.6133 0.5821 -0.0178 0.0329 -0.0011 34 HOH A O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 US4 4 4 4 US4 US4 A . n A 1 5 OMU 5 6 6 OMU OMU A . n A 1 6 DA 6 7 7 DA DA A . n A 1 7 DC 7 8 8 DC DC A . n A 1 8 DG 8 9 9 DG DG A . n A 1 9 DC 9 10 10 DC DC A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 5 5 HOH HOH A . B 2 HOH 2 11 11 HOH HOH A . B 2 HOH 3 12 12 HOH HOH A . B 2 HOH 4 13 13 HOH HOH A . B 2 HOH 5 15 15 HOH HOH A . B 2 HOH 6 16 16 HOH HOH A . B 2 HOH 7 17 17 HOH HOH A . B 2 HOH 8 18 18 HOH HOH A . B 2 HOH 9 20 20 HOH HOH A . B 2 HOH 10 21 21 HOH HOH A . B 2 HOH 11 22 22 HOH HOH A . B 2 HOH 12 23 23 HOH HOH A . B 2 HOH 13 24 24 HOH HOH A . B 2 HOH 14 25 25 HOH HOH A . B 2 HOH 15 26 26 HOH HOH A . B 2 HOH 16 27 27 HOH HOH A . B 2 HOH 17 28 28 HOH HOH A . B 2 HOH 18 29 29 HOH HOH A . B 2 HOH 19 30 30 HOH HOH A . B 2 HOH 20 31 31 HOH HOH A . B 2 HOH 21 32 32 HOH HOH A . B 2 HOH 22 33 33 HOH HOH A . B 2 HOH 23 34 34 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id OMU _pdbx_struct_mod_residue.label_seq_id 5 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id OMU _pdbx_struct_mod_residue.auth_seq_id 6 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id U _pdbx_struct_mod_residue.details ;O2'-METHYLURIDINE 5'-MONOPHOSPHATE ; # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2100 ? 1 MORE 4 ? 1 'SSA (A^2)' 3470 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-10-27 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2015-03-25 4 'Structure model' 1 3 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Other 3 4 'Structure model' Advisory 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' pdbx_validate_polymer_linkage 6 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_dist_value' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 6 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 10 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 11 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 12 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.5.0088 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DG 1 ? ? "C3'" A DG 1 ? ? 1.382 1.419 -0.037 0.006 N 2 1 "O3'" A DG 3 ? ? "C3'" A DG 3 ? ? 1.374 1.419 -0.045 0.006 N 3 1 C5 A DG 3 ? ? N7 A DG 3 ? ? 1.428 1.388 0.040 0.006 N 4 1 "O3'" A DG 9 ? ? "C3'" A DG 9 ? ? 1.352 1.419 -0.067 0.006 N 5 1 N1 A DC 10 ? ? C6 A DC 10 ? ? 1.325 1.367 -0.042 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 A DG 1 ? ? C6 A DG 1 ? ? O6 A DG 1 ? ? 124.65 119.90 4.75 0.60 N 2 1 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 126.22 121.90 4.32 0.70 N 3 1 C5 A DC 2 ? ? C4 A DC 2 ? ? N4 A DC 2 ? ? 115.70 120.20 -4.50 0.70 N 4 1 C5 A DG 3 ? ? C6 A DG 3 ? ? N1 A DG 3 ? ? 115.13 111.50 3.63 0.50 N 5 1 "O3'" A OMU 6 ? ? P A DA 7 ? ? OP2 A DA 7 ? ? 117.21 110.50 6.71 1.10 Y 6 1 "O4'" A DG 9 ? ? "C4'" A DG 9 ? ? "C3'" A DG 9 ? ? 99.22 104.50 -5.28 0.40 N 7 1 "C3'" A DG 9 ? ? "C2'" A DG 9 ? ? "C1'" A DG 9 ? ? 95.52 102.40 -6.88 0.80 N 8 1 C8 A DG 9 ? ? N9 A DG 9 ? ? C4 A DG 9 ? ? 108.89 106.40 2.49 0.40 N 9 1 "O4'" A DC 10 ? ? "C4'" A DC 10 ? ? "C3'" A DC 10 ? ? 100.90 104.50 -3.60 0.40 N 10 1 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 114.34 108.30 6.04 0.30 N 11 1 N3 A DC 10 ? ? C4 A DC 10 ? ? N4 A DC 10 ? ? 123.71 118.00 5.71 0.70 N 12 1 C5 A DC 10 ? ? C4 A DC 10 ? ? N4 A DC 10 ? ? 112.10 120.20 -8.10 0.70 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 HOH O O N N 108 HOH H1 H N N 109 HOH H2 H N N 110 OMU N1 N N N 111 OMU C2 C N N 112 OMU N3 N N N 113 OMU C4 C N N 114 OMU C5 C N N 115 OMU C6 C N N 116 OMU O2 O N N 117 OMU O4 O N N 118 OMU "C1'" C N R 119 OMU "C2'" C N R 120 OMU "O2'" O N N 121 OMU CM2 C N N 122 OMU "C3'" C N R 123 OMU "C4'" C N R 124 OMU "O3'" O N N 125 OMU "O4'" O N N 126 OMU "C5'" C N N 127 OMU "O5'" O N N 128 OMU P P N N 129 OMU OP1 O N N 130 OMU OP2 O N N 131 OMU OP3 O N N 132 OMU HN3 H N N 133 OMU H5 H N N 134 OMU H6 H N N 135 OMU "H1'" H N N 136 OMU "H2'" H N N 137 OMU HM21 H N N 138 OMU HM22 H N N 139 OMU HM23 H N N 140 OMU "H3'" H N N 141 OMU "H4'" H N N 142 OMU "HO3'" H N N 143 OMU "H5'" H N N 144 OMU "H5''" H N N 145 OMU HOP2 H N N 146 OMU HOP3 H N N 147 US4 P P N N 148 US4 O1P O N N 149 US4 O2P O N N 150 US4 "O5'" O N N 151 US4 "C5'" C N N 152 US4 "C4'" C N R 153 US4 "C3'" C N S 154 US4 "C2'" C N N 155 US4 "C1'" C N R 156 US4 "O4'" O N N 157 US4 N1 N N N 158 US4 C2 C N N 159 US4 N3 N N N 160 US4 C4 C N N 161 US4 O4 O N N 162 US4 C5 C N N 163 US4 C5M C N N 164 US4 C6 C N N 165 US4 O2 O N N 166 US4 "O3'" O N N 167 US4 "C7'" C N N 168 US4 "O8'" O N N 169 US4 "C9'" C N N 170 US4 "CU'" C N R 171 US4 "CY'" C N S 172 US4 "OZ'" O N N 173 US4 "CX'" C N N 174 US4 "CW'" C N R 175 US4 "OV'" O N N 176 US4 N19 N Y N 177 US4 C14 C Y N 178 US4 N13 N Y N 179 US4 C12 C Y N 180 US4 N11 N Y N 181 US4 C16 C Y N 182 US4 N16 N N N 183 US4 C15 C Y N 184 US4 N17 N Y N 185 US4 C18 C Y N 186 US4 "H15'" H N N 187 US4 "H25'" H N N 188 US4 "H4'" H N N 189 US4 "H3'" H N N 190 US4 "H12'" H N N 191 US4 "H22'" H N N 192 US4 "H1'" H N N 193 US4 HN3 H N N 194 US4 H15M H N N 195 US4 H25M H N N 196 US4 H35M H N N 197 US4 H6 H N N 198 US4 "H17'" H N N 199 US4 "H27'" H N N 200 US4 "H19'" H N N 201 US4 "H29'" H N N 202 US4 "HU'" H N N 203 US4 "HY'" H N N 204 US4 "HOZ'" H N N 205 US4 "H1X'" H N N 206 US4 "H2X'" H N N 207 US4 "HW'" H N N 208 US4 H12 H N N 209 US4 H116 H N N 210 US4 H216 H N N 211 US4 H18 H N N 212 US4 O3P O N N 213 US4 H27 H N N 214 US4 HO3P H N N 215 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 HOH O H1 sing N N 113 HOH O H2 sing N N 114 OMU N1 C2 sing N N 115 OMU N1 C6 sing N N 116 OMU N1 "C1'" sing N N 117 OMU C2 N3 sing N N 118 OMU C2 O2 doub N N 119 OMU N3 C4 sing N N 120 OMU N3 HN3 sing N N 121 OMU C4 C5 sing N N 122 OMU C4 O4 doub N N 123 OMU C5 C6 doub N N 124 OMU C5 H5 sing N N 125 OMU C6 H6 sing N N 126 OMU "C1'" "C2'" sing N N 127 OMU "C1'" "O4'" sing N N 128 OMU "C1'" "H1'" sing N N 129 OMU "C2'" "O2'" sing N N 130 OMU "C2'" "C3'" sing N N 131 OMU "C2'" "H2'" sing N N 132 OMU "O2'" CM2 sing N N 133 OMU CM2 HM21 sing N N 134 OMU CM2 HM22 sing N N 135 OMU CM2 HM23 sing N N 136 OMU "C3'" "C4'" sing N N 137 OMU "C3'" "O3'" sing N N 138 OMU "C3'" "H3'" sing N N 139 OMU "C4'" "O4'" sing N N 140 OMU "C4'" "C5'" sing N N 141 OMU "C4'" "H4'" sing N N 142 OMU "O3'" "HO3'" sing N N 143 OMU "C5'" "O5'" sing N N 144 OMU "C5'" "H5'" sing N N 145 OMU "C5'" "H5''" sing N N 146 OMU "O5'" P sing N N 147 OMU P OP1 doub N N 148 OMU P OP2 sing N N 149 OMU P OP3 sing N N 150 OMU OP2 HOP2 sing N N 151 OMU OP3 HOP3 sing N N 152 US4 P O2P doub N N 153 US4 P O1P sing N N 154 US4 "O5'" P sing N N 155 US4 "C5'" "O5'" sing N N 156 US4 "C5'" "H15'" sing N N 157 US4 "C5'" "H25'" sing N N 158 US4 "C4'" "C5'" sing N N 159 US4 "C4'" "C3'" sing N N 160 US4 "C4'" "H4'" sing N N 161 US4 "C3'" "O3'" sing N N 162 US4 "C3'" "H3'" sing N N 163 US4 "C2'" "C3'" sing N N 164 US4 "C2'" "H12'" sing N N 165 US4 "C2'" "H22'" sing N N 166 US4 "C1'" N1 sing N N 167 US4 "C1'" "C2'" sing N N 168 US4 "C1'" "H1'" sing N N 169 US4 "O4'" "C1'" sing N N 170 US4 "O4'" "C4'" sing N N 171 US4 N1 C6 sing N N 172 US4 C2 N1 sing N N 173 US4 C2 N3 sing N N 174 US4 N3 C4 sing N N 175 US4 N3 HN3 sing N N 176 US4 C4 C5 sing N N 177 US4 C4 O4 doub N N 178 US4 C5 C5M sing N N 179 US4 C5M H15M sing N N 180 US4 C5M H25M sing N N 181 US4 C5M H35M sing N N 182 US4 C6 C5 doub N N 183 US4 C6 H6 sing N N 184 US4 O2 C2 doub N N 185 US4 "O3'" "C7'" sing N N 186 US4 "C7'" "O8'" sing N N 187 US4 "C7'" "H17'" sing N N 188 US4 "C7'" "H27'" sing N N 189 US4 "C9'" "CU'" sing N N 190 US4 "C9'" "O8'" sing N N 191 US4 "C9'" "H19'" sing N N 192 US4 "C9'" "H29'" sing N N 193 US4 "CU'" "CY'" sing N N 194 US4 "CU'" "HU'" sing N N 195 US4 "CY'" "OZ'" sing N N 196 US4 "CY'" "HY'" sing N N 197 US4 "OZ'" "HOZ'" sing N N 198 US4 "CX'" "CY'" sing N N 199 US4 "CX'" "H1X'" sing N N 200 US4 "CX'" "H2X'" sing N N 201 US4 "CW'" N19 sing N N 202 US4 "CW'" "CX'" sing N N 203 US4 "CW'" "HW'" sing N N 204 US4 "OV'" "CW'" sing N N 205 US4 "OV'" "CU'" sing N N 206 US4 N19 C14 sing Y N 207 US4 N19 C18 sing Y N 208 US4 C14 C15 sing Y N 209 US4 N13 C14 doub Y N 210 US4 N13 C12 sing Y N 211 US4 C12 N11 doub Y N 212 US4 C12 H12 sing N N 213 US4 N11 C16 sing Y N 214 US4 C16 N16 sing N N 215 US4 N16 H116 sing N N 216 US4 N16 H216 sing N N 217 US4 C15 N17 sing Y N 218 US4 C15 C16 doub Y N 219 US4 C18 N17 doub Y N 220 US4 C18 H18 sing N N 221 US4 P O3P sing N N 222 US4 O1P H27 sing N N 223 US4 O3P HO3P sing N N 224 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3HR3 'a-form double helix' 3HR3 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 9 7_555 -0.242 -0.214 0.003 -4.933 -4.812 -1.909 1 A_DG1:DC10_A A 1 ? A 10 ? 19 1 1 A DC 2 1_555 A DG 8 7_555 0.192 -0.137 -0.018 -2.305 -6.333 2.154 2 A_DC2:DG9_A A 2 ? A 9 ? 19 1 1 A DG 3 1_555 A DC 7 7_555 -0.154 -0.116 0.029 -6.356 -13.798 3.633 3 A_DG3:DC8_A A 3 ? A 8 ? 19 1 1 A DG 1 1_555 A DC 9 1_555 -0.242 -0.214 0.003 -4.933 -4.812 -1.909 4 A_DG1:DC10_A A 1 ? A 10 ? 19 1 1 A DC 2 1_555 A DG 8 1_555 0.192 -0.137 -0.018 -2.305 -6.333 2.154 5 A_DC2:DG9_A A 2 ? A 9 ? 19 1 1 A DG 3 1_555 A DC 7 1_555 -0.154 -0.116 0.029 -6.355 -13.798 3.633 6 A_DG3:DC8_A A 3 ? A 8 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 9 7_555 A DC 2 1_555 A DG 8 7_555 -0.324 -1.558 3.339 -0.726 -2.385 36.285 -2.152 0.415 3.437 -3.823 1.164 36.368 1 AA_DG1DC2:DG9DC10_AA A 1 ? A 10 ? A 2 ? A 9 ? 1 A DC 2 1_555 A DG 8 7_555 A DG 3 1_555 A DC 7 7_555 0.094 -1.612 3.317 0.385 11.853 27.622 -5.351 -0.109 2.435 23.500 -0.764 30.015 2 AA_DC2DG3:DC8DG9_AA A 2 ? A 9 ? A 3 ? A 8 ? 1 A DG 1 1_555 A DC 9 1_555 A DC 2 1_555 A DG 8 1_555 -0.324 -1.558 3.339 -0.726 -2.385 36.285 -2.152 0.415 3.437 -3.823 1.164 36.368 3 AA_DG1DC2:DG9DC10_AA A 1 ? A 10 ? A 2 ? A 9 ? 1 A DC 2 1_555 A DG 8 1_555 A DG 3 1_555 A DC 7 1_555 0.094 -1.612 3.317 0.385 11.853 27.622 -5.351 -0.109 2.435 23.500 -0.764 30.015 4 AA_DC2DG3:DC8DG9_AA A 2 ? A 9 ? A 3 ? A 8 ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 411D _pdbx_initial_refinement_model.details 'Single strand from the duplex of PDB ID 411D.' #