data_4LTL # _entry.id 4LTL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4LTL pdb_00004ltl 10.2210/pdb4ltl/pdb NDB NA2621 ? ? RCSB RCSB081069 ? ? WWPDB D_1000081069 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3QRN 'High resolution hydrated structure' unspecified PDB 4LTG . unspecified PDB 4LTH . unspecified PDB 4LTI . unspecified PDB 4LTJ . unspecified PDB 4LTK . unspecified PDB 4LTF . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4LTL _pdbx_database_status.recvd_initial_deposition_date 2013-07-23 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hall, J.P.' 1 'Sanchez-Weatherby, J.' 2 'Cardin, C.J.' 3 # _citation.id primary _citation.title 'Controlled Dehydration of a Ruthenium Complex-DNA Crystal Induces Reversible DNA Kinking.' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 136 _citation.page_first 17505 _citation.page_last 17512 _citation.year 2014 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25393319 _citation.pdbx_database_id_DOI 10.1021/ja508745x # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hall, J.P.' 1 ? primary 'Sanchez-Weatherby, J.' 2 ? primary 'Alberti, C.' 3 ? primary 'Quimper, C.H.' 4 ? primary ;O'Sullivan, K. ; 5 ? primary 'Brazier, J.A.' 6 ? primary 'Winter, G.' 7 ? primary 'Sorensen, T.' 8 ? primary 'Kelly, J.M.' 9 ? primary 'Cardin, D.J.' 10 ? primary 'Cardin, C.J.' 11 ? # _cell.entry_id 4LTL _cell.length_a 43.140 _cell.length_b 43.140 _cell.length_c 39.310 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4LTL _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn DNA 3045.992 1 ? ? ? ? 2 non-polymer syn 'Ru(tap)2(dppz) complex' 747.732 1 ? ? ? ? 3 non-polymer syn 'BARIUM ION' 137.327 1 ? ? ? ? 4 water nat water 18.015 17 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DC)(DG)(DG)(DC)(DG)(DC)(DC)(DG)(DA)' _entity_poly.pdbx_seq_one_letter_code_can TCGGCGCCGA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DC n 1 3 DG n 1 4 DG n 1 5 DC n 1 6 DG n 1 7 DC n 1 8 DC n 1 9 DG n 1 10 DA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'DNA synthesised by ATDBio' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4LTL _struct_ref.pdbx_db_accession 4LTL _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code TCGGCGCCGA _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4LTL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 10 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 4LTL _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 10 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BA non-polymer . 'BARIUM ION' ? 'Ba 2' 137.327 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 RKL non-polymer . 'Ru(tap)2(dppz) complex' ? 'C38 H22 N12 Ru 2' 747.732 # _exptl.entry_id 4LTL _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.00 _exptl_crystal.density_percent_sol 59.03 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.3 _exptl_crystal_grow.pdbx_details ;1ul 1mM d(TCGGCGCCGA)2, 1ul 4mM lambda-[Ru(TAP)2(dppz)]2+, 6ul 12mM spermine, 10% MPD, 40mM sodium cacodylate, 80mM KCl, 20mM BaCl2. Equilibriated against 1ml 35% MPD. Crystal was rehydrated to 97% relative humidity on the beamline using the HC1b., pH 6.3, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 298 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2012-12-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'dual Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8266 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I02' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I02 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.8266 # _reflns.entry_id 4LTL _reflns.observed_criterion_sigma_I 2.6 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.50 _reflns.d_resolution_high 2.07 _reflns.number_obs 2507 _reflns.number_all 2507 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.07 _reflns_shell.d_res_low 2.12 _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4LTL _refine.ls_number_reflns_obs 2376 _refine.ls_number_reflns_all 2376 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.50 _refine.ls_d_res_high 2.07 _refine.ls_percent_reflns_obs 99.76 _refine.ls_R_factor_obs 0.15374 _refine.ls_R_factor_all 0.15374 _refine.ls_R_factor_R_work 0.15179 _refine.ls_R_factor_R_free 0.19145 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.4 _refine.ls_number_reflns_R_free 110 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.978 _refine.correlation_coeff_Fo_to_Fc_free 0.967 _refine.B_iso_mean 37.699 _refine.aniso_B[1][1] -0.23 _refine.aniso_B[2][2] -0.23 _refine.aniso_B[3][3] 0.45 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 3QRN' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.146 _refine.pdbx_overall_ESU_R_Free 0.136 _refine.overall_SU_ML 0.095 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 3.909 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 202 _refine_hist.pdbx_number_atoms_ligand 52 _refine_hist.number_atoms_solvent 17 _refine_hist.number_atoms_total 271 _refine_hist.d_res_high 2.07 _refine_hist.d_res_low 30.50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.014 0.013 ? 290 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.002 0.020 ? 134 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2.758 1.598 ? 456 ? 'X-RAY DIFFRACTION' r_angle_other_deg 1.577 3.000 ? 308 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_chiral_restr 0.066 0.200 ? 30 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.023 0.020 ? 176 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.003 0.020 ? 78 ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_it 3.900 3.777 ? 290 ? 'X-RAY DIFFRACTION' r_scbond_other 3.893 3.777 ? 291 ? 'X-RAY DIFFRACTION' r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_other 5.688 5.643 ? 457 ? 'X-RAY DIFFRACTION' r_long_range_B_refined 6.869 39.726 ? 639 ? 'X-RAY DIFFRACTION' r_long_range_B_other 6.840 39.733 ? 635 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.070 _refine_ls_shell.d_res_low 2.124 _refine_ls_shell.number_reflns_R_work 156 _refine_ls_shell.R_factor_R_work 0.214 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.408 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 8 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4LTL _struct.title 'Dehydration/Rehydration of a Nucleic Acid system containing a Polypyridyl Ruthenium Complex at 97% relative humidity (7/7)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4LTL _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Dehydration, HC1b, kinking, ruthenium, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 4 O6 ? ? ? 1_555 C BA . BA ? ? A DG 4 A BA 102 1_555 ? ? ? ? ? ? ? 2.958 ? ? metalc2 metalc ? ? C BA . BA ? ? ? 1_555 D HOH . O ? ? A BA 102 A HOH 203 1_555 ? ? ? ? ? ? ? 2.866 ? ? metalc3 metalc ? ? C BA . BA ? ? ? 1_555 D HOH . O ? ? A BA 102 A HOH 213 1_555 ? ? ? ? ? ? ? 2.731 ? ? metalc4 metalc ? ? C BA . BA ? ? ? 1_555 D HOH . O ? ? A BA 102 A HOH 214 1_555 ? ? ? ? ? ? ? 2.587 ? ? metalc5 metalc ? ? C BA . BA ? ? ? 1_555 D HOH . O ? ? A BA 102 A HOH 215 1_555 ? ? ? ? ? ? ? 2.861 ? ? hydrog1 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 9 N1 ? ? A DC 2 A DG 9 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 9 O6 ? ? A DC 2 A DG 9 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 9 N2 ? ? A DC 2 A DG 9 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 3 A DC 8 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 3 A DC 8 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 3 A DC 8 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DC 7 N3 ? ? A DG 4 A DC 7 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DC 7 O2 ? ? A DG 4 A DC 7 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DC 7 N4 ? ? A DG 4 A DC 7 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 5 A DG 6 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 5 A DG 6 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 5 A DG 6 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 6 A DC 5 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 6 A DC 5 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 6 A DC 5 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 N3 ? ? ? 1_555 A DG 4 N1 ? ? A DC 7 A DG 4 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 N4 ? ? ? 1_555 A DG 4 O6 ? ? A DC 7 A DG 4 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 O2 ? ? ? 1_555 A DG 4 N2 ? ? A DC 7 A DG 4 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 8 A DG 3 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 8 A DG 3 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 8 A DG 3 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DC 2 N3 ? ? A DG 9 A DC 2 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DC 2 O2 ? ? A DG 9 A DC 2 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 9 O6 ? ? ? 1_555 A DC 2 N4 ? ? A DG 9 A DC 2 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A RKL 101 ? 11 'BINDING SITE FOR RESIDUE RKL A 101' AC2 Software A BA 102 ? 7 'BINDING SITE FOR RESIDUE BA A 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 DT A 1 ? DT A 1 . ? 8_555 ? 2 AC1 11 DC A 2 ? DC A 2 . ? 8_555 ? 3 AC1 11 DG A 3 ? DG A 3 . ? 6_445 ? 4 AC1 11 DG A 3 ? DG A 3 . ? 8_555 ? 5 AC1 11 DG A 4 ? DG A 4 . ? 6_445 ? 6 AC1 11 DC A 5 ? DC A 5 . ? 6_445 ? 7 AC1 11 DC A 7 ? DC A 7 . ? 3_444 ? 8 AC1 11 DC A 8 ? DC A 8 . ? 3_444 ? 9 AC1 11 DG A 9 ? DG A 9 . ? 1_555 ? 10 AC1 11 DA A 10 ? DA A 10 . ? 3_444 ? 11 AC1 11 HOH D . ? HOH A 206 . ? 1_555 ? 12 AC2 7 DG A 3 ? DG A 3 . ? 1_555 ? 13 AC2 7 DG A 4 ? DG A 4 . ? 1_555 ? 14 AC2 7 HOH D . ? HOH A 203 . ? 1_555 ? 15 AC2 7 HOH D . ? HOH A 210 . ? 8_555 ? 16 AC2 7 HOH D . ? HOH A 213 . ? 1_555 ? 17 AC2 7 HOH D . ? HOH A 214 . ? 1_555 ? 18 AC2 7 HOH D . ? HOH A 215 . ? 1_555 ? # _database_PDB_matrix.entry_id 4LTL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4LTL _atom_sites.fract_transf_matrix[1][1] 0.023180 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023180 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025439 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BA C N O P RU # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DT A 1 1 ? 6.538 -2.677 25.286 1.00 63.47 ? 1 DT A "O5'" 1 ATOM 2 C "C5'" . DT A 1 1 ? 6.409 -1.370 24.697 1.00 57.15 ? 1 DT A "C5'" 1 ATOM 3 C "C4'" . DT A 1 1 ? 7.656 -1.049 23.904 1.00 52.93 ? 1 DT A "C4'" 1 ATOM 4 O "O4'" . DT A 1 1 ? 8.813 -1.217 24.742 1.00 48.10 ? 1 DT A "O4'" 1 ATOM 5 C "C3'" . DT A 1 1 ? 7.895 -1.958 22.704 1.00 49.61 ? 1 DT A "C3'" 1 ATOM 6 O "O3'" . DT A 1 1 ? 7.195 -1.406 21.584 1.00 52.74 ? 1 DT A "O3'" 1 ATOM 7 C "C2'" . DT A 1 1 ? 9.402 -1.928 22.554 1.00 51.71 ? 1 DT A "C2'" 1 ATOM 8 C "C1'" . DT A 1 1 ? 9.906 -1.669 23.968 1.00 49.77 ? 1 DT A "C1'" 1 ATOM 9 N N1 . DT A 1 1 ? 10.463 -2.838 24.640 1.00 55.63 ? 1 DT A N1 1 ATOM 10 C C2 . DT A 1 1 ? 11.561 -2.660 25.455 1.00 47.51 ? 1 DT A C2 1 ATOM 11 O O2 . DT A 1 1 ? 12.098 -1.581 25.626 1.00 42.03 ? 1 DT A O2 1 ATOM 12 N N3 . DT A 1 1 ? 12.015 -3.803 26.058 1.00 50.77 ? 1 DT A N3 1 ATOM 13 C C4 . DT A 1 1 ? 11.499 -5.076 25.925 1.00 58.29 ? 1 DT A C4 1 ATOM 14 O O4 . DT A 1 1 ? 12.034 -6.011 26.501 1.00 59.19 ? 1 DT A O4 1 ATOM 15 C C5 . DT A 1 1 ? 10.351 -5.192 25.056 1.00 64.50 ? 1 DT A C5 1 ATOM 16 C C7 . DT A 1 1 ? 9.743 -6.540 24.838 1.00 74.50 ? 1 DT A C7 1 ATOM 17 C C6 . DT A 1 1 ? 9.888 -4.081 24.473 1.00 60.45 ? 1 DT A C6 1 ATOM 18 P P . DC A 1 2 ? 6.992 -2.238 20.200 1.00 53.01 ? 2 DC A P 1 ATOM 19 O OP1 . DC A 1 2 ? 5.950 -1.545 19.434 1.00 52.74 ? 2 DC A OP1 1 ATOM 20 O OP2 . DC A 1 2 ? 6.878 -3.694 20.513 1.00 44.94 ? 2 DC A OP2 1 ATOM 21 O "O5'" . DC A 1 2 ? 8.385 -2.008 19.452 1.00 41.71 ? 2 DC A "O5'" 1 ATOM 22 C "C5'" . DC A 1 2 ? 8.743 -0.688 19.091 1.00 37.42 ? 2 DC A "C5'" 1 ATOM 23 C "C4'" . DC A 1 2 ? 9.907 -0.767 18.145 1.00 36.05 ? 2 DC A "C4'" 1 ATOM 24 O "O4'" . DC A 1 2 ? 10.969 -1.390 18.867 1.00 33.83 ? 2 DC A "O4'" 1 ATOM 25 C "C3'" . DC A 1 2 ? 9.680 -1.642 16.924 1.00 33.36 ? 2 DC A "C3'" 1 ATOM 26 O "O3'" . DC A 1 2 ? 9.318 -0.719 15.905 1.00 37.14 ? 2 DC A "O3'" 1 ATOM 27 C "C2'" . DC A 1 2 ? 11.052 -2.220 16.657 1.00 31.79 ? 2 DC A "C2'" 1 ATOM 28 C "C1'" . DC A 1 2 ? 11.760 -2.168 18.000 1.00 31.99 ? 2 DC A "C1'" 1 ATOM 29 N N1 . DC A 1 2 ? 11.958 -3.444 18.668 1.00 31.41 ? 2 DC A N1 1 ATOM 30 C C2 . DC A 1 2 ? 13.236 -3.773 19.137 1.00 35.31 ? 2 DC A C2 1 ATOM 31 O O2 . DC A 1 2 ? 14.186 -3.017 18.878 1.00 33.07 ? 2 DC A O2 1 ATOM 32 N N3 . DC A 1 2 ? 13.418 -4.946 19.790 1.00 35.20 ? 2 DC A N3 1 ATOM 33 C C4 . DC A 1 2 ? 12.377 -5.755 20.010 1.00 32.08 ? 2 DC A C4 1 ATOM 34 N N4 . DC A 1 2 ? 12.604 -6.890 20.661 1.00 33.20 ? 2 DC A N4 1 ATOM 35 C C5 . DC A 1 2 ? 11.066 -5.445 19.538 1.00 31.22 ? 2 DC A C5 1 ATOM 36 C C6 . DC A 1 2 ? 10.902 -4.282 18.889 1.00 31.96 ? 2 DC A C6 1 ATOM 37 P P . DG A 1 3 ? 8.891 -1.246 14.465 1.00 36.38 ? 3 DG A P 1 ATOM 38 O OP1 . DG A 1 3 ? 8.074 -0.205 13.810 1.00 39.65 ? 3 DG A OP1 1 ATOM 39 O OP2 . DG A 1 3 ? 8.417 -2.653 14.592 1.00 37.61 ? 3 DG A OP2 1 ATOM 40 O "O5'" . DG A 1 3 ? 10.305 -1.278 13.749 1.00 33.91 ? 3 DG A "O5'" 1 ATOM 41 C "C5'" . DG A 1 3 ? 10.958 -0.090 13.332 1.00 29.82 ? 3 DG A "C5'" 1 ATOM 42 C "C4'" . DG A 1 3 ? 12.335 -0.444 12.843 1.00 31.71 ? 3 DG A "C4'" 1 ATOM 43 O "O4'" . DG A 1 3 ? 13.089 -1.019 13.928 1.00 32.62 ? 3 DG A "O4'" 1 ATOM 44 C "C3'" . DG A 1 3 ? 12.368 -1.477 11.718 1.00 31.20 ? 3 DG A "C3'" 1 ATOM 45 O "O3'" . DG A 1 3 ? 12.416 -0.776 10.473 1.00 36.09 ? 3 DG A "O3'" 1 ATOM 46 C "C2'" . DG A 1 3 ? 13.677 -2.209 11.940 1.00 30.68 ? 3 DG A "C2'" 1 ATOM 47 C "C1'" . DG A 1 3 ? 13.897 -2.093 13.449 1.00 32.32 ? 3 DG A "C1'" 1 ATOM 48 N N9 . DG A 1 3 ? 13.517 -3.272 14.193 1.00 28.42 ? 3 DG A N9 1 ATOM 49 C C8 . DG A 1 3 ? 12.356 -3.978 14.059 1.00 25.80 ? 3 DG A C8 1 ATOM 50 N N7 . DG A 1 3 ? 12.280 -4.992 14.877 1.00 25.57 ? 3 DG A N7 1 ATOM 51 C C5 . DG A 1 3 ? 13.464 -4.949 15.586 1.00 26.20 ? 3 DG A C5 1 ATOM 52 C C6 . DG A 1 3 ? 13.956 -5.807 16.588 1.00 28.05 ? 3 DG A C6 1 ATOM 53 O O6 . DG A 1 3 ? 13.390 -6.769 17.119 1.00 28.65 ? 3 DG A O6 1 ATOM 54 N N1 . DG A 1 3 ? 15.198 -5.391 17.050 1.00 28.60 ? 3 DG A N1 1 ATOM 55 C C2 . DG A 1 3 ? 15.904 -4.337 16.550 1.00 26.71 ? 3 DG A C2 1 ATOM 56 N N2 . DG A 1 3 ? 17.122 -4.151 17.047 1.00 27.05 ? 3 DG A N2 1 ATOM 57 N N3 . DG A 1 3 ? 15.466 -3.547 15.592 1.00 29.36 ? 3 DG A N3 1 ATOM 58 C C4 . DG A 1 3 ? 14.233 -3.886 15.186 1.00 27.50 ? 3 DG A C4 1 ATOM 59 P P . DG A 1 4 ? 11.686 -1.368 9.152 1.00 39.73 ? 4 DG A P 1 ATOM 60 O OP1 . DG A 1 4 ? 11.658 -0.309 8.129 1.00 45.45 ? 4 DG A OP1 1 ATOM 61 O OP2 . DG A 1 4 ? 10.525 -2.178 9.543 1.00 41.27 ? 4 DG A OP2 1 ATOM 62 O "O5'" . DG A 1 4 ? 12.666 -2.504 8.658 1.00 39.87 ? 4 DG A "O5'" 1 ATOM 63 C "C5'" . DG A 1 4 ? 13.995 -2.200 8.237 1.00 37.91 ? 4 DG A "C5'" 1 ATOM 64 C "C4'" . DG A 1 4 ? 14.659 -3.490 7.833 1.00 36.63 ? 4 DG A "C4'" 1 ATOM 65 O "O4'" . DG A 1 4 ? 14.739 -4.389 8.973 1.00 34.79 ? 4 DG A "O4'" 1 ATOM 66 C "C3'" . DG A 1 4 ? 13.909 -4.266 6.749 1.00 35.23 ? 4 DG A "C3'" 1 ATOM 67 O "O3'" . DG A 1 4 ? 14.932 -4.894 6.016 1.00 39.88 ? 4 DG A "O3'" 1 ATOM 68 C "C2'" . DG A 1 4 ? 13.177 -5.333 7.528 1.00 33.12 ? 4 DG A "C2'" 1 ATOM 69 C "C1'" . DG A 1 4 ? 14.135 -5.624 8.680 1.00 30.46 ? 4 DG A "C1'" 1 ATOM 70 N N9 . DG A 1 4 ? 13.519 -6.112 9.913 1.00 30.64 ? 4 DG A N9 1 ATOM 71 C C8 . DG A 1 4 ? 12.368 -5.673 10.518 1.00 28.49 ? 4 DG A C8 1 ATOM 72 N N7 . DG A 1 4 ? 12.095 -6.310 11.622 1.00 29.30 ? 4 DG A N7 1 ATOM 73 C C5 . DG A 1 4 ? 13.139 -7.211 11.761 1.00 27.32 ? 4 DG A C5 1 ATOM 74 C C6 . DG A 1 4 ? 13.399 -8.157 12.772 1.00 29.27 ? 4 DG A C6 1 ATOM 75 O O6 . DG A 1 4 ? 12.740 -8.399 13.780 1.00 31.76 ? 4 DG A O6 1 ATOM 76 N N1 . DG A 1 4 ? 14.588 -8.842 12.544 1.00 30.68 ? 4 DG A N1 1 ATOM 77 C C2 . DG A 1 4 ? 15.418 -8.643 11.468 1.00 30.45 ? 4 DG A C2 1 ATOM 78 N N2 . DG A 1 4 ? 16.519 -9.421 11.404 1.00 30.35 ? 4 DG A N2 1 ATOM 79 N N3 . DG A 1 4 ? 15.186 -7.757 10.517 1.00 31.92 ? 4 DG A N3 1 ATOM 80 C C4 . DG A 1 4 ? 14.042 -7.075 10.732 1.00 29.62 ? 4 DG A C4 1 ATOM 81 P P . DC A 1 5 ? 14.714 -5.391 4.552 1.00 46.72 ? 5 DC A P 1 ATOM 82 O OP1 . DC A 1 5 ? 15.331 -4.369 3.696 1.00 60.39 ? 5 DC A OP1 1 ATOM 83 O OP2 . DC A 1 5 ? 13.293 -5.806 4.374 1.00 47.18 ? 5 DC A OP2 1 ATOM 84 O "O5'" . DC A 1 5 ? 15.596 -6.721 4.516 1.00 41.84 ? 5 DC A "O5'" 1 ATOM 85 C "C5'" . DC A 1 5 ? 16.995 -6.711 4.853 1.00 38.35 ? 5 DC A "C5'" 1 ATOM 86 C "C4'" . DC A 1 5 ? 17.383 -8.108 5.269 1.00 40.05 ? 5 DC A "C4'" 1 ATOM 87 O "O4'" . DC A 1 5 ? 16.933 -8.440 6.617 1.00 39.03 ? 5 DC A "O4'" 1 ATOM 88 C "C3'" . DC A 1 5 ? 16.768 -9.149 4.339 1.00 39.87 ? 5 DC A "C3'" 1 ATOM 89 O "O3'" . DC A 1 5 ? 17.753 -9.577 3.424 1.00 36.90 ? 5 DC A "O3'" 1 ATOM 90 C "C2'" . DC A 1 5 ? 16.414 -10.321 5.238 1.00 43.63 ? 5 DC A "C2'" 1 ATOM 91 C "C1'" . DC A 1 5 ? 16.495 -9.808 6.666 1.00 40.93 ? 5 DC A "C1'" 1 ATOM 92 N N1 . DC A 1 5 ? 15.212 -9.832 7.367 1.00 34.83 ? 5 DC A N1 1 ATOM 93 C C2 . DC A 1 5 ? 15.081 -10.625 8.506 1.00 36.53 ? 5 DC A C2 1 ATOM 94 O O2 . DC A 1 5 ? 16.022 -11.365 8.829 1.00 38.19 ? 5 DC A O2 1 ATOM 95 N N3 . DC A 1 5 ? 13.922 -10.593 9.206 1.00 30.64 ? 5 DC A N3 1 ATOM 96 C C4 . DC A 1 5 ? 12.952 -9.766 8.836 1.00 29.66 ? 5 DC A C4 1 ATOM 97 N N4 . DC A 1 5 ? 11.857 -9.718 9.584 1.00 32.68 ? 5 DC A N4 1 ATOM 98 C C5 . DC A 1 5 ? 13.055 -8.957 7.672 1.00 30.47 ? 5 DC A C5 1 ATOM 99 C C6 . DC A 1 5 ? 14.194 -9.017 6.975 1.00 30.15 ? 5 DC A C6 1 ATOM 100 P P . DG A 1 6 ? 17.339 -10.473 2.121 1.00 40.84 ? 6 DG A P 1 ATOM 101 O OP1 . DG A 1 6 ? 18.497 -10.491 1.186 1.00 43.40 ? 6 DG A OP1 1 ATOM 102 O OP2 . DG A 1 6 ? 15.940 -10.103 1.681 1.00 42.38 ? 6 DG A OP2 1 ATOM 103 O "O5'" . DG A 1 6 ? 17.189 -11.938 2.707 1.00 38.74 ? 6 DG A "O5'" 1 ATOM 104 C "C5'" . DG A 1 6 ? 18.281 -12.661 3.259 1.00 38.00 ? 6 DG A "C5'" 1 ATOM 105 C "C4'" . DG A 1 6 ? 17.778 -14.049 3.551 1.00 40.23 ? 6 DG A "C4'" 1 ATOM 106 O "O4'" . DG A 1 6 ? 16.823 -13.961 4.630 1.00 45.88 ? 6 DG A "O4'" 1 ATOM 107 C "C3'" . DG A 1 6 ? 17.048 -14.699 2.371 1.00 38.99 ? 6 DG A "C3'" 1 ATOM 108 O "O3'" . DG A 1 6 ? 17.469 -16.055 2.274 1.00 46.08 ? 6 DG A "O3'" 1 ATOM 109 C "C2'" . DG A 1 6 ? 15.572 -14.543 2.707 1.00 43.47 ? 6 DG A "C2'" 1 ATOM 110 C "C1'" . DG A 1 6 ? 15.557 -14.469 4.220 1.00 40.91 ? 6 DG A "C1'" 1 ATOM 111 N N9 . DG A 1 6 ? 14.522 -13.611 4.786 1.00 36.82 ? 6 DG A N9 1 ATOM 112 C C8 . DG A 1 6 ? 13.984 -12.458 4.268 1.00 35.64 ? 6 DG A C8 1 ATOM 113 N N7 . DG A 1 6 ? 13.047 -11.948 5.021 1.00 32.33 ? 6 DG A N7 1 ATOM 114 C C5 . DG A 1 6 ? 12.949 -12.826 6.086 1.00 30.57 ? 6 DG A C5 1 ATOM 115 C C6 . DG A 1 6 ? 12.082 -12.818 7.203 1.00 32.36 ? 6 DG A C6 1 ATOM 116 O O6 . DG A 1 6 ? 11.224 -11.983 7.506 1.00 33.10 ? 6 DG A O6 1 ATOM 117 N N1 . DG A 1 6 ? 12.269 -13.940 8.002 1.00 34.07 ? 6 DG A N1 1 ATOM 118 C C2 . DG A 1 6 ? 13.198 -14.925 7.773 1.00 33.44 ? 6 DG A C2 1 ATOM 119 N N2 . DG A 1 6 ? 13.248 -15.901 8.669 1.00 35.66 ? 6 DG A N2 1 ATOM 120 N N3 . DG A 1 6 ? 14.022 -14.939 6.743 1.00 32.24 ? 6 DG A N3 1 ATOM 121 C C4 . DG A 1 6 ? 13.847 -13.865 5.948 1.00 33.40 ? 6 DG A C4 1 ATOM 122 P P . DC A 1 7 ? 16.982 -16.996 1.066 1.00 53.08 ? 7 DC A P 1 ATOM 123 O OP1 . DC A 1 7 ? 18.055 -17.984 0.831 1.00 61.67 ? 7 DC A OP1 1 ATOM 124 O OP2 . DC A 1 7 ? 16.416 -16.205 -0.047 1.00 44.12 ? 7 DC A OP2 1 ATOM 125 O "O5'" . DC A 1 7 ? 15.776 -17.793 1.730 1.00 47.40 ? 7 DC A "O5'" 1 ATOM 126 C "C5'" . DC A 1 7 ? 16.016 -18.706 2.804 1.00 37.82 ? 7 DC A "C5'" 1 ATOM 127 C "C4'" . DC A 1 7 ? 14.676 -19.114 3.352 1.00 38.04 ? 7 DC A "C4'" 1 ATOM 128 O "O4'" . DC A 1 7 ? 14.123 -17.978 4.026 1.00 38.96 ? 7 DC A "O4'" 1 ATOM 129 C "C3'" . DC A 1 7 ? 13.625 -19.465 2.297 1.00 37.12 ? 7 DC A "C3'" 1 ATOM 130 O "O3'" . DC A 1 7 ? 13.762 -20.833 1.897 1.00 40.83 ? 7 DC A "O3'" 1 ATOM 131 C "C2'" . DC A 1 7 ? 12.323 -19.198 3.034 1.00 39.54 ? 7 DC A "C2'" 1 ATOM 132 C "C1'" . DC A 1 7 ? 12.722 -18.204 4.145 1.00 39.08 ? 7 DC A "C1'" 1 ATOM 133 N N1 . DC A 1 7 ? 12.060 -16.905 4.056 1.00 34.12 ? 7 DC A N1 1 ATOM 134 C C2 . DC A 1 7 ? 11.198 -16.497 5.088 1.00 30.68 ? 7 DC A C2 1 ATOM 135 O O2 . DC A 1 7 ? 11.037 -17.239 6.071 1.00 28.04 ? 7 DC A O2 1 ATOM 136 N N3 . DC A 1 7 ? 10.581 -15.302 4.993 1.00 29.51 ? 7 DC A N3 1 ATOM 137 C C4 . DC A 1 7 ? 10.808 -14.515 3.939 1.00 31.71 ? 7 DC A C4 1 ATOM 138 N N4 . DC A 1 7 ? 10.178 -13.340 3.892 1.00 34.80 ? 7 DC A N4 1 ATOM 139 C C5 . DC A 1 7 ? 11.653 -14.920 2.861 1.00 32.88 ? 7 DC A C5 1 ATOM 140 C C6 . DC A 1 7 ? 12.251 -16.112 2.960 1.00 31.70 ? 7 DC A C6 1 ATOM 141 P P . DC A 1 8 ? 13.529 -21.294 0.374 1.00 42.20 ? 8 DC A P 1 ATOM 142 O OP1 . DC A 1 8 ? 14.110 -22.626 0.235 1.00 43.94 ? 8 DC A OP1 1 ATOM 143 O OP2 . DC A 1 8 ? 13.817 -20.158 -0.566 1.00 38.83 ? 8 DC A OP2 1 ATOM 144 O "O5'" . DC A 1 8 ? 11.940 -21.410 0.248 1.00 36.89 ? 8 DC A "O5'" 1 ATOM 145 C "C5'" . DC A 1 8 ? 11.149 -22.236 1.087 1.00 35.34 ? 8 DC A "C5'" 1 ATOM 146 C "C4'" . DC A 1 8 ? 9.705 -21.965 0.736 1.00 38.61 ? 8 DC A "C4'" 1 ATOM 147 O "O4'" . DC A 1 8 ? 9.364 -20.653 1.204 1.00 35.32 ? 8 DC A "O4'" 1 ATOM 148 C "C3'" . DC A 1 8 ? 9.421 -21.937 -0.763 1.00 40.73 ? 8 DC A "C3'" 1 ATOM 149 O "O3'" . DC A 1 8 ? 8.782 -23.163 -1.055 1.00 50.49 ? 8 DC A "O3'" 1 ATOM 150 C "C2'" . DC A 1 8 ? 8.487 -20.750 -0.968 1.00 40.00 ? 8 DC A "C2'" 1 ATOM 151 C "C1'" . DC A 1 8 ? 8.327 -20.144 0.415 1.00 35.05 ? 8 DC A "C1'" 1 ATOM 152 N N1 . DC A 1 8 ? 8.444 -18.696 0.471 1.00 31.29 ? 8 DC A N1 1 ATOM 153 C C2 . DC A 1 8 ? 7.402 -17.968 1.035 1.00 30.14 ? 8 DC A C2 1 ATOM 154 O O2 . DC A 1 8 ? 6.381 -18.564 1.387 1.00 29.36 ? 8 DC A O2 1 ATOM 155 N N3 . DC A 1 8 ? 7.523 -16.633 1.167 1.00 31.01 ? 8 DC A N3 1 ATOM 156 C C4 . DC A 1 8 ? 8.613 -16.018 0.712 1.00 30.72 ? 8 DC A C4 1 ATOM 157 N N4 . DC A 1 8 ? 8.678 -14.697 0.849 1.00 30.95 ? 8 DC A N4 1 ATOM 158 C C5 . DC A 1 8 ? 9.712 -16.741 0.163 1.00 29.55 ? 8 DC A C5 1 ATOM 159 C C6 . DC A 1 8 ? 9.595 -18.070 0.086 1.00 31.74 ? 8 DC A C6 1 ATOM 160 P P . DG A 1 9 ? 8.599 -23.675 -2.573 1.00 49.18 ? 9 DG A P 1 ATOM 161 O OP1 . DG A 1 9 ? 8.399 -25.122 -2.491 1.00 52.95 ? 9 DG A OP1 1 ATOM 162 O OP2 . DG A 1 9 ? 9.593 -23.018 -3.464 1.00 44.32 ? 9 DG A OP2 1 ATOM 163 O "O5'" . DG A 1 9 ? 7.177 -23.110 -2.981 1.00 42.73 ? 9 DG A "O5'" 1 ATOM 164 C "C5'" . DG A 1 9 ? 6.015 -23.526 -2.278 1.00 39.50 ? 9 DG A "C5'" 1 ATOM 165 C "C4'" . DG A 1 9 ? 4.911 -22.636 -2.767 1.00 38.82 ? 9 DG A "C4'" 1 ATOM 166 O "O4'" . DG A 1 9 ? 5.223 -21.270 -2.415 1.00 38.10 ? 9 DG A "O4'" 1 ATOM 167 C "C3'" . DG A 1 9 ? 4.802 -22.634 -4.288 1.00 41.40 ? 9 DG A "C3'" 1 ATOM 168 O "O3'" . DG A 1 9 ? 3.431 -22.409 -4.572 1.00 56.61 ? 9 DG A "O3'" 1 ATOM 169 C "C2'" . DG A 1 9 ? 5.582 -21.408 -4.717 1.00 39.06 ? 9 DG A "C2'" 1 ATOM 170 C "C1'" . DG A 1 9 ? 5.170 -20.481 -3.597 1.00 37.03 ? 9 DG A "C1'" 1 ATOM 171 N N9 . DG A 1 9 ? 6.016 -19.313 -3.414 1.00 36.56 ? 9 DG A N9 1 ATOM 172 C C8 . DG A 1 9 ? 7.271 -19.069 -3.920 1.00 35.96 ? 9 DG A C8 1 ATOM 173 N N7 . DG A 1 9 ? 7.739 -17.895 -3.583 1.00 33.75 ? 9 DG A N7 1 ATOM 174 C C5 . DG A 1 9 ? 6.738 -17.340 -2.799 1.00 33.79 ? 9 DG A C5 1 ATOM 175 C C6 . DG A 1 9 ? 6.685 -16.102 -2.132 1.00 33.37 ? 9 DG A C6 1 ATOM 176 O O6 . DG A 1 9 ? 7.514 -15.183 -2.151 1.00 35.27 ? 9 DG A O6 1 ATOM 177 N N1 . DG A 1 9 ? 5.496 -15.955 -1.419 1.00 31.84 ? 9 DG A N1 1 ATOM 178 C C2 . DG A 1 9 ? 4.495 -16.893 -1.352 1.00 30.03 ? 9 DG A C2 1 ATOM 179 N N2 . DG A 1 9 ? 3.429 -16.584 -0.606 1.00 30.43 ? 9 DG A N2 1 ATOM 180 N N3 . DG A 1 9 ? 4.538 -18.057 -1.968 1.00 33.05 ? 9 DG A N3 1 ATOM 181 C C4 . DG A 1 9 ? 5.670 -18.204 -2.685 1.00 34.41 ? 9 DG A C4 1 ATOM 182 P P . DA A 1 10 ? 2.582 -23.525 -5.321 1.00 70.56 ? 10 DA A P 1 ATOM 183 O OP1 . DA A 1 10 ? 3.265 -23.866 -6.602 1.00 63.37 ? 10 DA A OP1 1 ATOM 184 O OP2 . DA A 1 10 ? 1.151 -23.101 -5.241 1.00 66.62 ? 10 DA A OP2 1 ATOM 185 O "O5'" . DA A 1 10 ? 2.819 -24.839 -4.459 1.00 65.43 ? 10 DA A "O5'" 1 ATOM 186 C "C5'" . DA A 1 10 ? 1.669 -25.472 -3.920 1.00 69.28 ? 10 DA A "C5'" 1 ATOM 187 C "C4'" . DA A 1 10 ? 2.024 -26.314 -2.724 1.00 66.07 ? 10 DA A "C4'" 1 ATOM 188 O "O4'" . DA A 1 10 ? 3.161 -25.759 -2.025 1.00 65.01 ? 10 DA A "O4'" 1 ATOM 189 C "C3'" . DA A 1 10 ? 0.866 -26.369 -1.729 1.00 67.62 ? 10 DA A "C3'" 1 ATOM 190 O "O3'" . DA A 1 10 ? 0.287 -27.678 -1.772 1.00 92.70 ? 10 DA A "O3'" 1 ATOM 191 C "C2'" . DA A 1 10 ? 1.481 -26.007 -0.389 1.00 64.55 ? 10 DA A "C2'" 1 ATOM 192 C "C1'" . DA A 1 10 ? 2.985 -26.002 -0.643 1.00 60.05 ? 10 DA A "C1'" 1 ATOM 193 N N9 . DA A 1 10 ? 3.689 -24.969 0.118 1.00 48.67 ? 10 DA A N9 1 ATOM 194 C C8 . DA A 1 10 ? 3.247 -23.732 0.512 1.00 45.93 ? 10 DA A C8 1 ATOM 195 N N7 . DA A 1 10 ? 4.099 -23.082 1.260 1.00 45.15 ? 10 DA A N7 1 ATOM 196 C C5 . DA A 1 10 ? 5.162 -23.957 1.387 1.00 39.42 ? 10 DA A C5 1 ATOM 197 C C6 . DA A 1 10 ? 6.382 -23.855 2.050 1.00 38.93 ? 10 DA A C6 1 ATOM 198 N N6 . DA A 1 10 ? 6.740 -22.798 2.761 1.00 39.79 ? 10 DA A N6 1 ATOM 199 N N1 . DA A 1 10 ? 7.242 -24.891 1.949 1.00 46.41 ? 10 DA A N1 1 ATOM 200 C C2 . DA A 1 10 ? 6.872 -25.962 1.240 1.00 44.49 ? 10 DA A C2 1 ATOM 201 N N3 . DA A 1 10 ? 5.755 -26.164 0.549 1.00 43.39 ? 10 DA A N3 1 ATOM 202 C C4 . DA A 1 10 ? 4.925 -25.120 0.685 1.00 42.88 ? 10 DA A C4 1 HETATM 203 RU RU . RKL B 2 . ? -0.683 -15.162 -2.127 1.00 31.84 ? 101 RKL A RU 1 HETATM 204 C C1 . RKL B 2 . ? 1.198 -16.350 -3.656 1.00 29.45 ? 101 RKL A C1 1 HETATM 205 N N1 . RKL B 2 . ? 1.162 -14.429 -2.375 1.00 32.10 ? 101 RKL A N1 1 HETATM 206 C C2 . RKL B 2 . ? -0.559 -17.800 -3.626 1.00 31.82 ? 101 RKL A C2 1 HETATM 207 N N2 . RKL B 2 . ? -0.037 -16.649 -3.297 1.00 30.84 ? 101 RKL A N2 1 HETATM 208 C C3 . RKL B 2 . ? 0.064 -18.676 -4.483 1.00 31.49 ? 101 RKL A C3 1 HETATM 209 N N3 . RKL B 2 . ? 3.829 -17.742 -5.696 1.00 35.74 ? 101 RKL A N3 1 HETATM 210 C C4 . RKL B 2 . ? 1.344 -18.378 -4.902 1.00 31.38 ? 101 RKL A C4 1 HETATM 211 N N4 . RKL B 2 . ? 5.049 -15.362 -4.912 1.00 37.18 ? 101 RKL A N4 1 HETATM 212 C C5 . RKL B 2 . ? 1.903 -17.205 -4.471 1.00 30.53 ? 101 RKL A C5 1 HETATM 213 N N5 . RKL B 2 . ? -0.060 -16.121 -0.465 1.00 34.01 ? 101 RKL A N5 1 HETATM 214 C C6 . RKL B 2 . ? 3.193 -16.852 -4.919 1.00 34.77 ? 101 RKL A C6 1 HETATM 215 N N6 . RKL B 2 . ? 0.439 -16.894 2.160 1.00 30.37 ? 101 RKL A N6 1 HETATM 216 C C7 . RKL B 2 . ? 3.788 -15.652 -4.504 1.00 31.85 ? 101 RKL A C7 1 HETATM 217 N N7 . RKL B 2 . ? -1.740 -11.994 1.240 1.00 30.47 ? 101 RKL A N7 1 HETATM 218 C C8 . RKL B 2 . ? 3.080 -14.819 -3.638 1.00 31.24 ? 101 RKL A C8 1 HETATM 219 N N8 . RKL B 2 . ? -1.252 -13.719 -0.942 1.00 29.82 ? 101 RKL A N8 1 HETATM 220 C C9 . RKL B 2 . ? 3.608 -13.642 -3.191 1.00 29.87 ? 101 RKL A C9 1 HETATM 221 N N9 . RKL B 2 . ? -1.365 -14.195 -3.727 1.00 29.05 ? 101 RKL A N9 1 HETATM 222 C C10 . RKL B 2 . ? 1.785 -15.158 -3.244 1.00 28.69 ? 101 RKL A C10 1 HETATM 223 N N10 . RKL B 2 . ? -2.905 -12.950 -5.741 1.00 24.44 ? 101 RKL A N10 1 HETATM 224 C C11 . RKL B 2 . ? 2.872 -12.852 -2.351 1.00 31.19 ? 101 RKL A C11 1 HETATM 225 N N11 . RKL B 2 . ? -5.255 -16.511 -2.365 1.00 28.76 ? 101 RKL A N11 1 HETATM 226 C C12 . RKL B 2 . ? 1.611 -13.237 -1.980 1.00 32.98 ? 101 RKL A C12 1 HETATM 227 N N12 . RKL B 2 . ? -2.618 -15.899 -1.947 1.00 32.70 ? 101 RKL A N12 1 HETATM 228 C C13 . RKL B 2 . ? 5.683 -16.259 -5.723 1.00 38.46 ? 101 RKL A C13 1 HETATM 229 C C14 . RKL B 2 . ? 6.979 -15.983 -6.212 1.00 40.08 ? 101 RKL A C14 1 HETATM 230 C C15 . RKL B 2 . ? 5.060 -17.463 -6.115 1.00 40.61 ? 101 RKL A C15 1 HETATM 231 C C16 . RKL B 2 . ? 5.702 -18.391 -6.976 1.00 41.15 ? 101 RKL A C16 1 HETATM 232 C C17 . RKL B 2 . ? 6.993 -18.101 -7.429 1.00 43.16 ? 101 RKL A C17 1 HETATM 233 C C18 . RKL B 2 . ? 7.627 -16.898 -7.054 1.00 38.84 ? 101 RKL A C18 1 HETATM 234 C C19 . RKL B 2 . ? -0.345 -15.316 0.576 1.00 30.23 ? 101 RKL A C19 1 HETATM 235 C C20 . RKL B 2 . ? 0.370 -17.335 -0.217 1.00 36.87 ? 101 RKL A C20 1 HETATM 236 C C21 . RKL B 2 . ? 0.666 -17.702 1.125 1.00 34.15 ? 101 RKL A C21 1 HETATM 237 C C22 . RKL B 2 . ? -0.062 -15.685 1.897 1.00 33.20 ? 101 RKL A C22 1 HETATM 238 C C23 . RKL B 2 . ? -0.310 -14.852 2.970 1.00 28.98 ? 101 RKL A C23 1 HETATM 239 C C24 . RKL B 2 . ? -0.884 -13.630 2.727 1.00 34.74 ? 101 RKL A C24 1 HETATM 240 C C25 . RKL B 2 . ? -1.208 -13.223 1.413 1.00 33.37 ? 101 RKL A C25 1 HETATM 241 C C26 . RKL B 2 . ? -0.925 -14.065 0.312 1.00 30.46 ? 101 RKL A C26 1 HETATM 242 C C27 . RKL B 2 . ? -2.001 -11.664 -0.049 1.00 31.25 ? 101 RKL A C27 1 HETATM 243 C C28 . RKL B 2 . ? -1.747 -12.513 -1.143 1.00 34.59 ? 101 RKL A C28 1 HETATM 244 C C29 . RKL B 2 . ? -2.680 -14.430 -3.852 1.00 24.78 ? 101 RKL A C29 1 HETATM 245 C C30 . RKL B 2 . ? -0.925 -13.268 -4.585 1.00 29.13 ? 101 RKL A C30 1 HETATM 246 C C31 . RKL B 2 . ? -1.675 -12.698 -5.548 1.00 26.55 ? 101 RKL A C31 1 HETATM 247 C C32 . RKL B 2 . ? -3.434 -13.846 -4.900 1.00 24.96 ? 101 RKL A C32 1 HETATM 248 C C33 . RKL B 2 . ? -4.785 -14.158 -5.008 1.00 24.00 ? 101 RKL A C33 1 HETATM 249 C C34 . RKL B 2 . ? -5.412 -15.063 -4.158 1.00 24.21 ? 101 RKL A C34 1 HETATM 250 C C35 . RKL B 2 . ? -4.659 -15.659 -3.160 1.00 26.57 ? 101 RKL A C35 1 HETATM 251 C C36 . RKL B 2 . ? -3.308 -15.359 -2.981 1.00 25.71 ? 101 RKL A C36 1 HETATM 252 C C37 . RKL B 2 . ? -4.550 -17.102 -1.409 1.00 31.39 ? 101 RKL A C37 1 HETATM 253 C C38 . RKL B 2 . ? -3.210 -16.835 -1.196 1.00 28.85 ? 101 RKL A C38 1 HETATM 254 BA BA . BA C 3 . ? 10.187 -6.919 13.987 1.00 34.40 ? 102 BA A BA 1 HETATM 255 O O . HOH D 4 . ? -4.172 -14.456 0.954 1.00 31.12 ? 201 HOH A O 1 HETATM 256 O O . HOH D 4 . ? -1.206 -16.188 -6.534 1.00 32.59 ? 202 HOH A O 1 HETATM 257 O O . HOH D 4 . ? 9.708 -4.449 12.614 1.00 35.42 ? 203 HOH A O 1 HETATM 258 O O . HOH D 4 . ? 10.022 -7.522 8.699 1.00 34.76 ? 204 HOH A O 1 HETATM 259 O O . HOH D 4 . ? 2.547 -19.805 -0.806 1.00 43.66 ? 205 HOH A O 1 HETATM 260 O O . HOH D 4 . ? -1.503 -10.257 -2.831 1.00 47.42 ? 206 HOH A O 1 HETATM 261 O O . HOH D 4 . ? 17.891 -2.227 14.257 1.00 47.93 ? 207 HOH A O 1 HETATM 262 O O . HOH D 4 . ? -2.993 -16.861 1.911 1.00 47.91 ? 208 HOH A O 1 HETATM 263 O O . HOH D 4 . ? 11.769 -9.901 4.101 1.00 45.13 ? 209 HOH A O 1 HETATM 264 O O . HOH D 4 . ? 9.677 -10.120 6.401 1.00 40.20 ? 210 HOH A O 1 HETATM 265 O O . HOH D 4 . ? 10.784 -11.690 1.646 1.00 50.25 ? 211 HOH A O 1 HETATM 266 O O . HOH D 4 . ? 10.473 -16.911 -4.293 1.00 55.50 ? 212 HOH A O 1 HETATM 267 O O . HOH D 4 . ? 9.067 -5.228 15.816 1.00 34.30 ? 213 HOH A O 1 HETATM 268 O O . HOH D 4 . ? 11.043 -7.548 16.346 1.00 30.54 ? 214 HOH A O 1 HETATM 269 O O . HOH D 4 . ? 8.860 -7.316 11.484 1.00 46.54 ? 215 HOH A O 1 HETATM 270 O O . HOH D 4 . ? 8.454 3.238 18.214 1.00 55.14 ? 216 HOH A O 1 HETATM 271 O O . HOH D 4 . ? -2.318 -17.429 4.455 1.00 49.30 ? 217 HOH A O 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DC 8 8 8 DC DC A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DA 10 10 10 DA DA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RKL 1 101 11 RKL RKL A . C 3 BA 1 102 12 BA BA A . D 4 HOH 1 201 1 HOH HOH A . D 4 HOH 2 202 2 HOH HOH A . D 4 HOH 3 203 3 HOH HOH A . D 4 HOH 4 204 4 HOH HOH A . D 4 HOH 5 205 5 HOH HOH A . D 4 HOH 6 206 6 HOH HOH A . D 4 HOH 7 207 7 HOH HOH A . D 4 HOH 8 208 8 HOH HOH A . D 4 HOH 9 209 9 HOH HOH A . D 4 HOH 10 210 10 HOH HOH A . D 4 HOH 11 211 12 HOH HOH A . D 4 HOH 12 212 14 HOH HOH A . D 4 HOH 13 213 16 HOH HOH A . D 4 HOH 14 214 17 HOH HOH A . D 4 HOH 15 215 18 HOH HOH A . D 4 HOH 16 216 21 HOH HOH A . D 4 HOH 17 217 22 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1950 ? 1 MORE -26 ? 1 'SSA (A^2)' 4530 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 19.6550000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 203 ? 1_555 122.8 ? 2 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 213 ? 1_555 135.3 ? 3 O ? D HOH . ? A HOH 203 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 213 ? 1_555 73.7 ? 4 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 214 ? 1_555 69.9 ? 5 O ? D HOH . ? A HOH 203 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 214 ? 1_555 134.6 ? 6 O ? D HOH . ? A HOH 213 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 214 ? 1_555 71.1 ? 7 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 215 ? 1_555 105.6 ? 8 O ? D HOH . ? A HOH 203 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 215 ? 1_555 67.8 ? 9 O ? D HOH . ? A HOH 213 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 215 ? 1_555 118.8 ? 10 O ? D HOH . ? A HOH 214 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? D HOH . ? A HOH 215 ? 1_555 156.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-09-24 2 'Structure model' 1 1 2014-12-03 3 'Structure model' 1 2 2015-01-07 4 'Structure model' 1 3 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.value' 16 4 'Structure model' '_struct_conn.pdbx_dist_value' 17 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 23 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 28 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 29 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 30 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal GDA 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.7.0032 ? 3 XDS 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O5'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 DG _pdbx_validate_rmsd_angle.auth_seq_id_1 4 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 P _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 DG _pdbx_validate_rmsd_angle.auth_seq_id_2 4 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OP2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 DG _pdbx_validate_rmsd_angle.auth_seq_id_3 4 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 100.20 _pdbx_validate_rmsd_angle.angle_target_value 105.70 _pdbx_validate_rmsd_angle.angle_deviation -5.50 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BA BA BA N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 DT OP3 O N N 109 DT P P N N 110 DT OP1 O N N 111 DT OP2 O N N 112 DT "O5'" O N N 113 DT "C5'" C N N 114 DT "C4'" C N R 115 DT "O4'" O N N 116 DT "C3'" C N S 117 DT "O3'" O N N 118 DT "C2'" C N N 119 DT "C1'" C N R 120 DT N1 N N N 121 DT C2 C N N 122 DT O2 O N N 123 DT N3 N N N 124 DT C4 C N N 125 DT O4 O N N 126 DT C5 C N N 127 DT C7 C N N 128 DT C6 C N N 129 DT HOP3 H N N 130 DT HOP2 H N N 131 DT "H5'" H N N 132 DT "H5''" H N N 133 DT "H4'" H N N 134 DT "H3'" H N N 135 DT "HO3'" H N N 136 DT "H2'" H N N 137 DT "H2''" H N N 138 DT "H1'" H N N 139 DT H3 H N N 140 DT H71 H N N 141 DT H72 H N N 142 DT H73 H N N 143 DT H6 H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 RKL RU RU N N 148 RKL C1 C Y N 149 RKL N1 N Y N 150 RKL C2 C Y N 151 RKL N2 N Y N 152 RKL C3 C Y N 153 RKL N3 N Y N 154 RKL C4 C Y N 155 RKL N4 N Y N 156 RKL C5 C Y N 157 RKL N5 N Y N 158 RKL C6 C Y N 159 RKL N6 N Y N 160 RKL C7 C Y N 161 RKL N7 N Y N 162 RKL C8 C Y N 163 RKL N8 N Y N 164 RKL C9 C Y N 165 RKL N9 N Y N 166 RKL C10 C Y N 167 RKL N10 N Y N 168 RKL C11 C Y N 169 RKL N11 N Y N 170 RKL C12 C Y N 171 RKL N12 N Y N 172 RKL C13 C Y N 173 RKL C14 C Y N 174 RKL C15 C Y N 175 RKL C16 C Y N 176 RKL C17 C Y N 177 RKL C18 C Y N 178 RKL C19 C Y N 179 RKL C20 C Y N 180 RKL C21 C Y N 181 RKL C22 C Y N 182 RKL C23 C Y N 183 RKL C24 C Y N 184 RKL C25 C Y N 185 RKL C26 C Y N 186 RKL C27 C Y N 187 RKL C28 C Y N 188 RKL C29 C Y N 189 RKL C30 C Y N 190 RKL C31 C Y N 191 RKL C32 C Y N 192 RKL C33 C Y N 193 RKL C34 C Y N 194 RKL C35 C Y N 195 RKL C36 C Y N 196 RKL C37 C Y N 197 RKL C38 C Y N 198 RKL H2 H N N 199 RKL H3 H N N 200 RKL H4 H N N 201 RKL H9 H N N 202 RKL H11 H N N 203 RKL H12 H N N 204 RKL H14 H N N 205 RKL H16 H N N 206 RKL H17 H N N 207 RKL H18 H N N 208 RKL H20 H N N 209 RKL H21 H N N 210 RKL H23 H N N 211 RKL H24 H N N 212 RKL H27 H N N 213 RKL H28 H N N 214 RKL H30 H N N 215 RKL H31 H N N 216 RKL H33 H N N 217 RKL H34 H N N 218 RKL H37 H N N 219 RKL H38 H N N 220 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 RKL RU N1 sing N N 152 RKL RU N2 sing N N 153 RKL RU N5 sing N N 154 RKL RU N8 sing N N 155 RKL RU N9 sing N N 156 RKL RU N12 sing N N 157 RKL C1 N2 doub Y N 158 RKL C1 C5 sing Y N 159 RKL C1 C10 sing Y N 160 RKL N1 C10 doub Y N 161 RKL N1 C12 sing Y N 162 RKL C2 N2 sing Y N 163 RKL C2 C3 doub Y N 164 RKL C2 H2 sing N N 165 RKL C3 C4 sing Y N 166 RKL C3 H3 sing N N 167 RKL N3 C6 doub Y N 168 RKL N3 C15 sing Y N 169 RKL C4 C5 doub Y N 170 RKL C4 H4 sing N N 171 RKL N4 C7 doub Y N 172 RKL N4 C13 sing Y N 173 RKL C5 C6 sing Y N 174 RKL N5 C19 doub Y N 175 RKL N5 C20 sing Y N 176 RKL C6 C7 sing Y N 177 RKL N6 C21 sing Y N 178 RKL N6 C22 doub Y N 179 RKL C7 C8 sing Y N 180 RKL N7 C25 doub Y N 181 RKL N7 C27 sing Y N 182 RKL C8 C9 doub Y N 183 RKL C8 C10 sing Y N 184 RKL N8 C26 doub Y N 185 RKL N8 C28 sing Y N 186 RKL C9 C11 sing Y N 187 RKL C9 H9 sing N N 188 RKL N9 C29 doub Y N 189 RKL N9 C30 sing Y N 190 RKL N10 C31 sing Y N 191 RKL N10 C32 doub Y N 192 RKL C11 C12 doub Y N 193 RKL C11 H11 sing N N 194 RKL N11 C35 doub Y N 195 RKL N11 C37 sing Y N 196 RKL C12 H12 sing N N 197 RKL N12 C36 doub Y N 198 RKL N12 C38 sing Y N 199 RKL C13 C14 sing Y N 200 RKL C13 C15 doub Y N 201 RKL C14 C18 doub Y N 202 RKL C14 H14 sing N N 203 RKL C15 C16 sing Y N 204 RKL C16 C17 doub Y N 205 RKL C16 H16 sing N N 206 RKL C17 C18 sing Y N 207 RKL C17 H17 sing N N 208 RKL C18 H18 sing N N 209 RKL C19 C22 sing Y N 210 RKL C19 C26 sing Y N 211 RKL C20 C21 doub Y N 212 RKL C20 H20 sing N N 213 RKL C21 H21 sing N N 214 RKL C22 C23 sing Y N 215 RKL C23 C24 doub Y N 216 RKL C23 H23 sing N N 217 RKL C24 C25 sing Y N 218 RKL C24 H24 sing N N 219 RKL C25 C26 sing Y N 220 RKL C27 C28 doub Y N 221 RKL C27 H27 sing N N 222 RKL C28 H28 sing N N 223 RKL C29 C32 sing Y N 224 RKL C29 C36 sing Y N 225 RKL C30 C31 doub Y N 226 RKL C30 H30 sing N N 227 RKL C31 H31 sing N N 228 RKL C32 C33 sing Y N 229 RKL C33 C34 doub Y N 230 RKL C33 H33 sing N N 231 RKL C34 C35 sing Y N 232 RKL C34 H34 sing N N 233 RKL C35 C36 sing Y N 234 RKL C37 C38 doub Y N 235 RKL C37 H37 sing N N 236 RKL C38 H38 sing N N 237 # _ndb_struct_conf_na.entry_id 4LTL _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 2 1_555 A DG 9 8_555 0.057 -0.104 0.165 -11.307 6.575 -0.180 1 A_DC2:DG9_A A 2 ? A 9 ? 19 1 1 A DG 3 1_555 A DC 8 8_555 -0.167 -0.066 0.151 24.286 -4.925 -1.855 2 A_DG3:DC8_A A 3 ? A 8 ? 19 1 1 A DG 4 1_555 A DC 7 8_555 -0.209 -0.235 -0.027 -7.004 2.034 -2.747 3 A_DG4:DC7_A A 4 ? A 7 ? 19 1 1 A DC 5 1_555 A DG 6 8_555 0.337 -0.106 0.218 -2.011 -8.546 -0.288 4 A_DC5:DG6_A A 5 ? A 6 ? 19 1 1 A DG 6 1_555 A DC 5 8_555 -0.337 -0.106 0.218 2.011 -8.546 -0.288 5 A_DG6:DC5_A A 6 ? A 5 ? 19 1 1 A DC 7 1_555 A DG 4 8_555 0.209 -0.235 -0.027 7.004 2.034 -2.747 6 A_DC7:DG4_A A 7 ? A 4 ? 19 1 1 A DC 8 1_555 A DG 3 8_555 0.167 -0.066 0.151 -24.286 -4.925 -1.855 7 A_DC8:DG3_A A 8 ? A 3 ? 19 1 1 A DG 9 1_555 A DC 2 8_555 -0.057 -0.104 0.165 11.307 6.575 -0.180 8 A_DG9:DC2_A A 9 ? A 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 2 1_555 A DG 9 8_555 A DG 3 1_555 A DC 8 8_555 -0.438 1.737 2.667 0.866 3.793 20.766 3.376 1.506 2.913 10.405 -2.374 21.124 1 AA_DC2DG3:DC8DG9_AA A 2 ? A 9 ? A 3 ? A 8 ? 1 A DG 3 1_555 A DC 8 8_555 A DG 4 1_555 A DC 7 8_555 -0.205 0.779 5.246 -2.463 49.747 14.917 -5.464 -0.080 2.310 74.288 3.678 51.857 2 AA_DG3DG4:DC7DC8_AA A 3 ? A 8 ? A 4 ? A 7 ? 1 A DG 4 1_555 A DC 7 8_555 A DC 5 1_555 A DG 6 8_555 -0.740 0.261 3.289 -2.951 -1.563 39.030 0.579 0.746 3.322 -2.334 4.407 39.167 3 AA_DG4DC5:DG6DC7_AA A 4 ? A 7 ? A 5 ? A 6 ? 1 A DC 5 1_555 A DG 6 8_555 A DG 6 1_555 A DC 5 8_555 0.000 0.941 3.454 0.000 21.153 24.176 -2.780 0.000 3.235 41.722 0.000 32.019 4 AA_DC5DG6:DC5DG6_AA A 5 ? A 6 ? A 6 ? A 5 ? 1 A DG 6 1_555 A DC 5 8_555 A DC 7 1_555 A DG 4 8_555 0.740 0.261 3.289 2.951 -1.563 39.030 0.579 -0.746 3.322 -2.334 -4.407 39.167 5 AA_DG6DC7:DG4DC5_AA A 6 ? A 5 ? A 7 ? A 4 ? 1 A DC 7 1_555 A DG 4 8_555 A DC 8 1_555 A DG 3 8_555 0.205 0.779 5.246 2.463 49.747 14.917 -5.464 0.080 2.310 74.288 -3.678 51.857 6 AA_DC7DC8:DG3DG4_AA A 7 ? A 4 ? A 8 ? A 3 ? 1 A DC 8 1_555 A DG 3 8_555 A DG 9 1_555 A DC 2 8_555 0.438 1.737 2.667 -0.866 3.793 20.766 3.376 -1.506 2.913 10.405 2.374 21.124 7 AA_DC8DG9:DC2DG3_AA A 8 ? A 3 ? A 9 ? A 2 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'Ru(tap)2(dppz) complex' RKL 3 'BARIUM ION' BA 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3QRN _pdbx_initial_refinement_model.details 'PDB ENTRY 3QRN' #