data_4NP8 # _entry.id 4NP8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4NP8 pdb_00004np8 10.2210/pdb4np8/pdb RCSB RCSB083483 ? ? WWPDB D_1000083483 ? ? # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2013-12-18 _pdbx_database_PDB_obs_spr.pdb_id 4NP8 _pdbx_database_PDB_obs_spr.replace_pdb_id 3FQP _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2ON9 'SAME SEQUENCE, BUT DIFFERENT PACKING.' unspecified PDB 3OVL 'SAME SEQUENCE, BUT WITH ORANGE G LIGAND BOUND.' unspecified # _pdbx_database_status.entry_id 4NP8 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-11-20 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Landau, M.' 1 'Eisenberg, D.' 2 'Sawaya, M.R.' 3 'Dannenberg, J.' 4 'Kobko, N.' 5 # _citation.id primary _citation.title 'Molecular mechanisms for protein-encoded inheritance.' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 16 _citation.page_first 973 _citation.page_last 978 _citation.year 2009 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19684598 _citation.pdbx_database_id_DOI 10.1038/nsmb.1643 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wiltzius, J.J.' 1 ? primary 'Landau, M.' 2 ? primary 'Nelson, R.' 3 ? primary 'Sawaya, M.R.' 4 ? primary 'Apostol, M.I.' 5 ? primary 'Goldschmidt, L.' 6 ? primary 'Soriaga, A.B.' 7 ? primary 'Cascio, D.' 8 ? primary 'Rajashankar, K.' 9 ? primary 'Eisenberg, D.' 10 ? # _cell.length_a 28.635 _cell.length_b 4.880 _cell.length_c 35.807 _cell.angle_alpha 90.000 _cell.angle_beta 110.470 _cell.angle_gamma 90.000 _cell.entry_id 4NP8 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.entry_id 4NP8 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 5 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Microtubule-associated protein tau' 749.917 1 ? ? 'UNP residues 623-628' ? 2 water nat water 18.015 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Neurofibrillary tangle protein, Paired helical filament-tau, PHF-tau' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code VQIVYK _entity_poly.pdbx_seq_one_letter_code_can VQIVYK _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 GLN n 1 3 ILE n 1 4 VAL n 1 5 TYR n 1 6 LYS n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TAU_HUMAN _struct_ref.pdbx_db_accession P10636 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code VQIVYK _struct_ref.pdbx_align_begin 623 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4NP8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P10636 _struct_ref_seq.db_align_beg 623 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 628 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4NP8 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.56 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 21.29 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details ;reservoir contained 14% iso-Propanol, 0.07M HEPES-Na pH 7.5, 0.14M Sodium Citrate, and 30% Glycerol, vapor diffusion, hanging drop, temperature 298K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-02-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-E # _reflns.entry_id 4NP8 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.0 _reflns.d_resolution_high 1.50 _reflns.d_resolution_low 90 _reflns.number_all 825 _reflns.number_obs 825 _reflns.percent_possible_obs 94.4 _reflns.pdbx_Rmerge_I_obs 0.1600 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 8.1 _reflns.B_iso_Wilson_estimate 15.1 _reflns.pdbx_redundancy 4.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.50 _reflns_shell.d_res_low 1.62 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 82.1 _reflns_shell.Rmerge_I_obs 0.3760 _reflns_shell.meanI_over_sigI_obs 4.7 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 4.0 _reflns_shell.number_unique_all 156 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4NP8 _refine.ls_d_res_high 1.5100 _refine.ls_d_res_low 16.7800 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 92.5800 _refine.ls_number_reflns_obs 823 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1791 _refine.ls_R_factor_R_work 0.1770 _refine.ls_wR_factor_R_work 0.1940 _refine.ls_R_factor_R_free 0.1959 _refine.ls_wR_factor_R_free 0.2070 _refine.ls_percent_reflns_R_free 11.1000 _refine.ls_number_reflns_R_free 91 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 7.5741 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.0900 _refine.aniso_B[2][2] -0.2100 _refine.aniso_B[3][3] 0.1300 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.1100 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9610 _refine.correlation_coeff_Fo_to_Fc_free 0.9550 _refine.overall_SU_R_Cruickshank_DPI 0.0982 _refine.overall_SU_R_free 0.0894 _refine.pdbx_overall_ESU_R 0.0980 _refine.pdbx_overall_ESU_R_Free 0.0890 _refine.overall_SU_ML 0.0650 _refine.overall_SU_B 1.8950 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 2ON9 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8187 _refine.B_iso_max 26.570 _refine.B_iso_min 3.800 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 53 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 1 _refine_hist.number_atoms_total 54 _refine_hist.d_res_high 1.5100 _refine_hist.d_res_low 16.7800 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 59 0.012 0.020 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 70 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 81 1.399 2.014 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 160 0.442 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 7 4.383 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 2 38.771 25.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 13 9.004 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 11 0.097 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 60 0.008 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 12 0.000 0.020 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.5080 _refine_ls_shell.d_res_low 1.5470 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 73.1300 _refine_ls_shell.number_reflns_R_work 45 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2230 _refine_ls_shell.R_factor_R_free 0.2760 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 4 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 49 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4NP8 _struct.title 'Structure of an amyloid forming peptide VQIVYK from the second repeat region of tau (alternate polymorph)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4NP8 _struct_keywords.text 'amyloid-like protofibril, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ;The biological unit is a pair of beta sheets. One sheet is constructed from chain A and unit cell translations along the b direction (i.e. X,Y+1,Z; X,Y+2,Z; X,Y+3,Z, etc.). The second sheet is constructed from -1/2-X,1/2+Y,-Z; -1/2-X,3/2+Y,-Z; -1/2-X,5/2+Y,-Z; etc.). ; # _atom_sites.entry_id 4NP8 _atom_sites.fract_transf_matrix[1][1] 0.034922 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.013036 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.204918 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.029810 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 N N . VAL A 1 1 ? -11.383 -0.016 2.382 1.00 8.68 ? 1 VAL A N 1 ATOM 2 C CA . VAL A 1 1 ? -10.009 -0.596 2.558 1.00 7.18 ? 1 VAL A CA 1 ATOM 3 C C . VAL A 1 1 ? -9.359 0.025 3.781 1.00 5.67 ? 1 VAL A C 1 ATOM 4 O O . VAL A 1 1 ? -9.293 1.246 3.889 1.00 5.32 ? 1 VAL A O 1 ATOM 5 C CB . VAL A 1 1 ? -9.138 -0.365 1.319 1.00 7.59 ? 1 VAL A CB 1 ATOM 6 C CG1 . VAL A 1 1 ? -7.711 -0.834 1.560 1.00 8.59 ? 1 VAL A CG1 1 ATOM 7 C CG2 . VAL A 1 1 ? -9.718 -1.052 0.096 1.00 8.49 ? 1 VAL A CG2 1 ATOM 8 N N . GLN A 1 2 ? -8.910 -0.804 4.727 1.00 4.46 ? 2 GLN A N 1 ATOM 9 C CA . GLN A 1 2 ? -8.184 -0.281 5.897 1.00 4.31 ? 2 GLN A CA 1 ATOM 10 C C . GLN A 1 2 ? -6.776 -0.888 5.960 1.00 4.29 ? 2 GLN A C 1 ATOM 11 O O . GLN A 1 2 ? -6.633 -2.117 5.938 1.00 4.08 ? 2 GLN A O 1 ATOM 12 C CB . GLN A 1 2 ? -8.913 -0.648 7.211 1.00 4.21 ? 2 GLN A CB 1 ATOM 13 C CG . GLN A 1 2 ? -8.334 0.018 8.440 1.00 4.44 ? 2 GLN A CG 1 ATOM 14 C CD . GLN A 1 2 ? -8.930 -0.456 9.728 1.00 4.91 ? 2 GLN A CD 1 ATOM 15 O OE1 . GLN A 1 2 ? -8.890 -1.639 10.034 1.00 5.38 ? 2 GLN A OE1 1 ATOM 16 N NE2 . GLN A 1 2 ? -9.426 0.471 10.517 1.00 5.26 ? 2 GLN A NE2 1 ATOM 17 N N . ILE A 1 3 ? -5.734 -0.066 6.049 1.00 4.16 ? 3 ILE A N 1 ATOM 18 C CA A ILE A 1 3 ? -4.360 -0.573 6.243 0.50 4.08 ? 3 ILE A CA 1 ATOM 19 C CA B ILE A 1 3 ? -4.358 -0.573 6.244 0.50 4.39 ? 3 ILE A CA 1 ATOM 20 C C . ILE A 1 3 ? -3.828 0.082 7.509 1.00 4.10 ? 3 ILE A C 1 ATOM 21 O O . ILE A 1 3 ? -3.877 1.296 7.629 1.00 3.80 ? 3 ILE A O 1 ATOM 22 C CB A ILE A 1 3 ? -3.460 -0.235 5.052 0.50 4.26 ? 3 ILE A CB 1 ATOM 23 C CB B ILE A 1 3 ? -3.405 -0.211 5.099 0.50 5.02 ? 3 ILE A CB 1 ATOM 24 C CG1 A ILE A 1 3 ? -3.997 -0.928 3.796 0.50 4.18 ? 3 ILE A CG1 1 ATOM 25 C CG1 B ILE A 1 3 ? -4.088 -0.353 3.732 0.50 5.40 ? 3 ILE A CG1 1 ATOM 26 C CG2 A ILE A 1 3 ? -2.010 -0.632 5.332 0.50 4.40 ? 3 ILE A CG2 1 ATOM 27 C CG2 B ILE A 1 3 ? -2.146 -1.074 5.192 0.50 5.33 ? 3 ILE A CG2 1 ATOM 28 C CD1 A ILE A 1 3 ? -3.185 -0.674 2.544 0.50 4.27 ? 3 ILE A CD1 1 ATOM 29 C CD1 B ILE A 1 3 ? -4.356 -1.769 3.315 0.50 5.77 ? 3 ILE A CD1 1 ATOM 30 N N . VAL A 1 4 ? -3.360 -0.727 8.459 1.00 4.27 ? 4 VAL A N 1 ATOM 31 C CA . VAL A 1 4 ? -2.852 -0.193 9.726 1.00 5.01 ? 4 VAL A CA 1 ATOM 32 C C . VAL A 1 4 ? -1.439 -0.712 9.946 1.00 4.68 ? 4 VAL A C 1 ATOM 33 O O . VAL A 1 4 ? -1.227 -1.913 9.911 1.00 4.66 ? 4 VAL A O 1 ATOM 34 C CB . VAL A 1 4 ? -3.747 -0.638 10.917 1.00 6.35 ? 4 VAL A CB 1 ATOM 35 C CG1 . VAL A 1 4 ? -3.231 -0.097 12.239 1.00 8.30 ? 4 VAL A CG1 1 ATOM 36 C CG2 . VAL A 1 4 ? -5.171 -0.190 10.688 1.00 7.62 ? 4 VAL A CG2 1 ATOM 37 N N . TYR A 1 5 ? -0.487 0.208 10.086 1.00 5.23 ? 5 TYR A N 1 ATOM 38 C CA . TYR A 1 5 ? 0.899 -0.131 10.386 1.00 5.91 ? 5 TYR A CA 1 ATOM 39 C C . TYR A 1 5 ? 1.228 0.149 11.833 1.00 7.22 ? 5 TYR A C 1 ATOM 40 O O . TYR A 1 5 ? 1.148 1.299 12.278 1.00 8.70 ? 5 TYR A O 1 ATOM 41 C CB . TYR A 1 5 ? 1.832 0.704 9.527 1.00 6.10 ? 5 TYR A CB 1 ATOM 42 C CG . TYR A 1 5 ? 1.720 0.503 8.044 1.00 6.41 ? 5 TYR A CG 1 ATOM 43 C CD1 . TYR A 1 5 ? 0.917 1.307 7.273 1.00 6.78 ? 5 TYR A CD1 1 ATOM 44 C CD2 . TYR A 1 5 ? 2.463 -0.461 7.413 1.00 6.27 ? 5 TYR A CD2 1 ATOM 45 C CE1 . TYR A 1 5 ? 0.859 1.146 5.893 1.00 7.73 ? 5 TYR A CE1 1 ATOM 46 C CE2 . TYR A 1 5 ? 2.399 -0.635 6.049 1.00 6.62 ? 5 TYR A CE2 1 ATOM 47 C CZ . TYR A 1 5 ? 1.621 0.168 5.285 1.00 7.02 ? 5 TYR A CZ 1 ATOM 48 O OH . TYR A 1 5 ? 1.582 -0.055 3.909 1.00 9.55 ? 5 TYR A OH 1 ATOM 49 N N . LYS A 1 6 ? 1.662 -0.866 12.561 1.00 8.70 ? 6 LYS A N 1 ATOM 50 C CA . LYS A 1 6 ? 2.121 -0.697 13.949 1.00 10.61 ? 6 LYS A CA 1 ATOM 51 C C . LYS A 1 6 ? 3.464 -1.423 14.200 1.00 15.54 ? 6 LYS A C 1 ATOM 52 O O . LYS A 1 6 ? 3.999 -2.220 13.387 1.00 12.86 ? 6 LYS A O 1 ATOM 53 C CB . LYS A 1 6 ? 1.121 -1.286 14.900 1.00 11.79 ? 6 LYS A CB 1 ATOM 54 C CG . LYS A 1 6 ? -0.312 -0.847 14.694 1.00 13.41 ? 6 LYS A CG 1 ATOM 55 C CD . LYS A 1 6 ? -1.147 -1.342 15.840 1.00 15.25 ? 6 LYS A CD 1 ATOM 56 C CE . LYS A 1 6 ? -2.614 -0.974 15.677 1.00 17.66 ? 6 LYS A CE 1 ATOM 57 N NZ . LYS A 1 6 ? -3.345 -1.046 16.989 1.00 18.79 ? 6 LYS A NZ 1 ATOM 58 O OXT . LYS A 1 6 ? 4.021 -1.261 15.304 1.00 19.24 ? 6 LYS A OXT 1 HETATM 59 O O . HOH B 2 . ? 6.024 -4.169 13.136 1.00 26.57 ? 101 HOH A O 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 1 1 VAL VAL A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 TYR 5 5 5 TYR TYR A . n A 1 6 LYS 6 6 6 LYS LYS A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id HOH _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 7 _pdbx_nonpoly_scheme.pdb_mon_id HOH _pdbx_nonpoly_scheme.auth_mon_id HOH _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4.8800000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 1_575 x,y+2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 9.7600000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 1_585 x,y+3,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 14.6400000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5 'crystal symmetry operation' 4_455 -x-1/2,y+1/2,-z -1.0000000000 0.0000000000 0.0000000000 -14.3175000000 0.0000000000 1.0000000000 0.0000000000 2.4400000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 6 'crystal symmetry operation' 4_465 -x-1/2,y+3/2,-z -1.0000000000 0.0000000000 0.0000000000 -14.3175000000 0.0000000000 1.0000000000 0.0000000000 7.3200000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 7 'crystal symmetry operation' 4_475 -x-1/2,y+5/2,-z -1.0000000000 0.0000000000 0.0000000000 -14.3175000000 0.0000000000 1.0000000000 0.0000000000 12.2000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 8 'crystal symmetry operation' 4_485 -x-1/2,y+7/2,-z -1.0000000000 0.0000000000 0.0000000000 -14.3175000000 0.0000000000 1.0000000000 0.0000000000 17.0800000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-12-18 2 'Structure model' 1 1 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal GLN N N N N 1 GLN CA C N S 2 GLN C C N N 3 GLN O O N N 4 GLN CB C N N 5 GLN CG C N N 6 GLN CD C N N 7 GLN OE1 O N N 8 GLN NE2 N N N 9 GLN OXT O N N 10 GLN H H N N 11 GLN H2 H N N 12 GLN HA H N N 13 GLN HB2 H N N 14 GLN HB3 H N N 15 GLN HG2 H N N 16 GLN HG3 H N N 17 GLN HE21 H N N 18 GLN HE22 H N N 19 GLN HXT H N N 20 HOH O O N N 21 HOH H1 H N N 22 HOH H2 H N N 23 ILE N N N N 24 ILE CA C N S 25 ILE C C N N 26 ILE O O N N 27 ILE CB C N S 28 ILE CG1 C N N 29 ILE CG2 C N N 30 ILE CD1 C N N 31 ILE OXT O N N 32 ILE H H N N 33 ILE H2 H N N 34 ILE HA H N N 35 ILE HB H N N 36 ILE HG12 H N N 37 ILE HG13 H N N 38 ILE HG21 H N N 39 ILE HG22 H N N 40 ILE HG23 H N N 41 ILE HD11 H N N 42 ILE HD12 H N N 43 ILE HD13 H N N 44 ILE HXT H N N 45 LYS N N N N 46 LYS CA C N S 47 LYS C C N N 48 LYS O O N N 49 LYS CB C N N 50 LYS CG C N N 51 LYS CD C N N 52 LYS CE C N N 53 LYS NZ N N N 54 LYS OXT O N N 55 LYS H H N N 56 LYS H2 H N N 57 LYS HA H N N 58 LYS HB2 H N N 59 LYS HB3 H N N 60 LYS HG2 H N N 61 LYS HG3 H N N 62 LYS HD2 H N N 63 LYS HD3 H N N 64 LYS HE2 H N N 65 LYS HE3 H N N 66 LYS HZ1 H N N 67 LYS HZ2 H N N 68 LYS HZ3 H N N 69 LYS HXT H N N 70 TYR N N N N 71 TYR CA C N S 72 TYR C C N N 73 TYR O O N N 74 TYR CB C N N 75 TYR CG C Y N 76 TYR CD1 C Y N 77 TYR CD2 C Y N 78 TYR CE1 C Y N 79 TYR CE2 C Y N 80 TYR CZ C Y N 81 TYR OH O N N 82 TYR OXT O N N 83 TYR H H N N 84 TYR H2 H N N 85 TYR HA H N N 86 TYR HB2 H N N 87 TYR HB3 H N N 88 TYR HD1 H N N 89 TYR HD2 H N N 90 TYR HE1 H N N 91 TYR HE2 H N N 92 TYR HH H N N 93 TYR HXT H N N 94 VAL N N N N 95 VAL CA C N S 96 VAL C C N N 97 VAL O O N N 98 VAL CB C N N 99 VAL CG1 C N N 100 VAL CG2 C N N 101 VAL OXT O N N 102 VAL H H N N 103 VAL H2 H N N 104 VAL HA H N N 105 VAL HB H N N 106 VAL HG11 H N N 107 VAL HG12 H N N 108 VAL HG13 H N N 109 VAL HG21 H N N 110 VAL HG22 H N N 111 VAL HG23 H N N 112 VAL HXT H N N 113 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLN N CA sing N N 1 GLN N H sing N N 2 GLN N H2 sing N N 3 GLN CA C sing N N 4 GLN CA CB sing N N 5 GLN CA HA sing N N 6 GLN C O doub N N 7 GLN C OXT sing N N 8 GLN CB CG sing N N 9 GLN CB HB2 sing N N 10 GLN CB HB3 sing N N 11 GLN CG CD sing N N 12 GLN CG HG2 sing N N 13 GLN CG HG3 sing N N 14 GLN CD OE1 doub N N 15 GLN CD NE2 sing N N 16 GLN NE2 HE21 sing N N 17 GLN NE2 HE22 sing N N 18 GLN OXT HXT sing N N 19 HOH O H1 sing N N 20 HOH O H2 sing N N 21 ILE N CA sing N N 22 ILE N H sing N N 23 ILE N H2 sing N N 24 ILE CA C sing N N 25 ILE CA CB sing N N 26 ILE CA HA sing N N 27 ILE C O doub N N 28 ILE C OXT sing N N 29 ILE CB CG1 sing N N 30 ILE CB CG2 sing N N 31 ILE CB HB sing N N 32 ILE CG1 CD1 sing N N 33 ILE CG1 HG12 sing N N 34 ILE CG1 HG13 sing N N 35 ILE CG2 HG21 sing N N 36 ILE CG2 HG22 sing N N 37 ILE CG2 HG23 sing N N 38 ILE CD1 HD11 sing N N 39 ILE CD1 HD12 sing N N 40 ILE CD1 HD13 sing N N 41 ILE OXT HXT sing N N 42 LYS N CA sing N N 43 LYS N H sing N N 44 LYS N H2 sing N N 45 LYS CA C sing N N 46 LYS CA CB sing N N 47 LYS CA HA sing N N 48 LYS C O doub N N 49 LYS C OXT sing N N 50 LYS CB CG sing N N 51 LYS CB HB2 sing N N 52 LYS CB HB3 sing N N 53 LYS CG CD sing N N 54 LYS CG HG2 sing N N 55 LYS CG HG3 sing N N 56 LYS CD CE sing N N 57 LYS CD HD2 sing N N 58 LYS CD HD3 sing N N 59 LYS CE NZ sing N N 60 LYS CE HE2 sing N N 61 LYS CE HE3 sing N N 62 LYS NZ HZ1 sing N N 63 LYS NZ HZ2 sing N N 64 LYS NZ HZ3 sing N N 65 LYS OXT HXT sing N N 66 TYR N CA sing N N 67 TYR N H sing N N 68 TYR N H2 sing N N 69 TYR CA C sing N N 70 TYR CA CB sing N N 71 TYR CA HA sing N N 72 TYR C O doub N N 73 TYR C OXT sing N N 74 TYR CB CG sing N N 75 TYR CB HB2 sing N N 76 TYR CB HB3 sing N N 77 TYR CG CD1 doub Y N 78 TYR CG CD2 sing Y N 79 TYR CD1 CE1 sing Y N 80 TYR CD1 HD1 sing N N 81 TYR CD2 CE2 doub Y N 82 TYR CD2 HD2 sing N N 83 TYR CE1 CZ doub Y N 84 TYR CE1 HE1 sing N N 85 TYR CE2 CZ sing Y N 86 TYR CE2 HE2 sing N N 87 TYR CZ OH sing N N 88 TYR OH HH sing N N 89 TYR OXT HXT sing N N 90 VAL N CA sing N N 91 VAL N H sing N N 92 VAL N H2 sing N N 93 VAL CA C sing N N 94 VAL CA CB sing N N 95 VAL CA HA sing N N 96 VAL C O doub N N 97 VAL C OXT sing N N 98 VAL CB CG1 sing N N 99 VAL CB CG2 sing N N 100 VAL CB HB sing N N 101 VAL CG1 HG11 sing N N 102 VAL CG1 HG12 sing N N 103 VAL CG1 HG13 sing N N 104 VAL CG2 HG21 sing N N 105 VAL CG2 HG22 sing N N 106 VAL CG2 HG23 sing N N 107 VAL OXT HXT sing N N 108 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2ON9 _pdbx_initial_refinement_model.details ? #