data_4RIP # _entry.id 4RIP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4RIP pdb_00004rip 10.2210/pdb4rip/pdb NDB NA3217 ? ? RCSB RCSB087394 ? ? WWPDB D_1000087394 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-02-11 2 'Structure model' 1 1 2015-02-25 3 'Structure model' 1 2 2015-03-04 4 'Structure model' 1 3 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Derived calculations' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4RIP _pdbx_database_status.recvd_initial_deposition_date 2014-10-07 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4RIM _pdbx_database_related.details 'Native structure of intercalation-locked DNA tetraplex' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tripathi, S.K.' 1 'Zhang, D.' 2 'Paukstelis, P.' 3 # _citation.id primary _citation.title 'An intercalation-locked parallel-stranded DNA tetraplex.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 43 _citation.page_first 1937 _citation.page_last 1944 _citation.year 2015 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25628357 _citation.pdbx_database_id_DOI 10.1093/nar/gkv033 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tripathi, S.' 1 ? primary 'Zhang, D.' 2 ? primary 'Paukstelis, P.J.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*AP*CP*(BRU)P*CP*GP*GP*AP*(BRU)P*GP*AP*T)-3') ; 3502.962 1 ? ? ? ? 2 water nat water 18.015 25 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DA)(DC)(BRU)(DC)(DG)(DG)(DA)(BRU)(DG)(DA)(DT)' _entity_poly.pdbx_seq_one_letter_code_can ACUCGGAUGAT _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DC n 1 3 BRU n 1 4 DC n 1 5 DG n 1 6 DG n 1 7 DA n 1 8 BRU n 1 9 DG n 1 10 DA n 1 11 DT n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BRU 'DNA linking' n "5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O8 P' 387.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA DA A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 BRU 3 3 3 BRU BRU A . n A 1 4 DC 4 4 4 DC DC A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DA 7 7 7 DA DA A . n A 1 8 BRU 8 8 8 BRU BRU A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DA 10 10 10 DA DA A . n A 1 11 DT 11 11 11 DT DT A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 101 1 HOH HOH A . B 2 HOH 2 102 2 HOH HOH A . B 2 HOH 3 103 3 HOH HOH A . B 2 HOH 4 104 4 HOH HOH A . B 2 HOH 5 105 5 HOH HOH A . B 2 HOH 6 106 6 HOH HOH A . B 2 HOH 7 107 7 HOH HOH A . B 2 HOH 8 108 8 HOH HOH A . B 2 HOH 9 109 9 HOH HOH A . B 2 HOH 10 110 10 HOH HOH A . B 2 HOH 11 111 11 HOH HOH A . B 2 HOH 12 112 12 HOH HOH A . B 2 HOH 13 113 13 HOH HOH A . B 2 HOH 14 114 14 HOH HOH A . B 2 HOH 15 115 15 HOH HOH A . B 2 HOH 16 116 16 HOH HOH A . B 2 HOH 17 117 17 HOH HOH A . B 2 HOH 18 118 18 HOH HOH A . B 2 HOH 19 119 19 HOH HOH A . B 2 HOH 20 120 20 HOH HOH A . B 2 HOH 21 121 21 HOH HOH A . B 2 HOH 22 122 22 HOH HOH A . B 2 HOH 23 123 23 HOH HOH A . B 2 HOH 24 124 24 HOH HOH A . B 2 HOH 25 125 25 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A DT 11 ? "O5'" ? A DT 11 "O5'" 2 1 Y 1 A DT 11 ? "C5'" ? A DT 11 "C5'" 3 1 Y 1 A DT 11 ? "C4'" ? A DT 11 "C4'" 4 1 Y 1 A DT 11 ? "O4'" ? A DT 11 "O4'" 5 1 Y 1 A DT 11 ? "C3'" ? A DT 11 "C3'" 6 1 Y 1 A DT 11 ? "O3'" ? A DT 11 "O3'" 7 1 Y 1 A DT 11 ? "C2'" ? A DT 11 "C2'" 8 1 Y 1 A DT 11 ? "C1'" ? A DT 11 "C1'" 9 1 Y 1 A DT 11 ? N1 ? A DT 11 N1 10 1 Y 1 A DT 11 ? C2 ? A DT 11 C2 11 1 Y 1 A DT 11 ? O2 ? A DT 11 O2 12 1 Y 1 A DT 11 ? N3 ? A DT 11 N3 13 1 Y 1 A DT 11 ? C4 ? A DT 11 C4 14 1 Y 1 A DT 11 ? O4 ? A DT 11 O4 15 1 Y 1 A DT 11 ? C5 ? A DT 11 C5 16 1 Y 1 A DT 11 ? C7 ? A DT 11 C7 17 1 Y 1 A DT 11 ? C6 ? A DT 11 C6 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CBF1.3 'data collection' . ? 1 SHELXS phasing . ? 2 PHENIX refinement '(phenix.refine: 1.7.3_928)' ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _cell.entry_id 4RIP _cell.length_a 26.400 _cell.length_b 26.400 _cell.length_c 166.452 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4RIP _symmetry.space_group_name_H-M 'P 62 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4RIP _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.39 _exptl_crystal.density_percent_sol 48.54 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 300 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.4 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '100 mM MgCl2, 5% PEG400, 30 mM sodium cacodylate, pH 7.4, 8mM cobalt hexamine, VAPOR DIFFUSION, SITTING DROP, temperature 300K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M-F' _diffrn_detector.pdbx_collection_date 2014-06-12 _diffrn_detector.details mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Silicon _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9198 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9198 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4RIP _reflns.observed_criterion_sigma_I 3.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 55.484 _reflns.d_resolution_high 2.03 _reflns.number_obs 2699 _reflns.number_all ? _reflns.percent_possible_obs 99 _reflns.pdbx_Rmerge_I_obs 0.063 _reflns.pdbx_Rsym_value 0.063 _reflns.pdbx_netI_over_sigmaI 2.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9.5 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.03 _reflns_shell.d_res_low 2.14 _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs 0.196 _reflns_shell.pdbx_Rsym_value 0.196 _reflns_shell.meanI_over_sigI_obs 3.6 _reflns_shell.pdbx_redundancy 9.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4RIP _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 2422 _refine.ls_number_reflns_all 3804 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.46 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 55 _refine.ls_d_res_high 2.100 _refine.ls_percent_reflns_obs 99.63 _refine.ls_R_factor_obs 0.2328 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2324 _refine.ls_R_factor_R_free 0.2385 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.10 _refine.ls_number_reflns_R_free 194 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 1.2078 _refine.aniso_B[2][2] 1.2078 _refine.aniso_B[3][3] -2.4155 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.400 _refine.solvent_model_param_bsol 30.030 _refine.pdbx_solvent_vdw_probe_radii 1.00 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.73 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.00 _refine.pdbx_overall_phase_error 24.26 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 207 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 25 _refine_hist.number_atoms_total 232 _refine_hist.d_res_high 2.100 _refine_hist.d_res_low 55 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.007 ? ? 232 'X-RAY DIFFRACTION' ? f_angle_d 1.659 ? ? 356 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 39.746 ? ? 99 'X-RAY DIFFRACTION' ? f_chiral_restr 0.098 ? ? 37 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 10 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.1000 _refine_ls_shell.d_res_low 2.14 _refine_ls_shell.number_reflns_R_work 3610 _refine_ls_shell.R_factor_R_work 0.2324 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.2385 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 194 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _database_PDB_matrix.entry_id 4RIP _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4RIP _struct.title 'BromoUracil substituted structure of intercalation-locked DNA tetraplex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4RIP _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'BromoUracil, homoduplex, intercalation-locked DNA tetraplex, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4RIP _struct_ref.pdbx_db_accession 4RIP _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4RIP _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 11 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 4RIP _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 11 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 11 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_775 -x+2,-y+2,z -1.0000000000 0.0000000000 0.0000000000 26.4000000000 0.0000000000 -1.0000000000 0.0000000000 45.7261413198 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 9_765 -x+2,-x+y+1,-z+1/3 -0.5000000000 -0.8660254038 0.0000000000 39.6000000000 -0.8660254038 0.5000000000 0.0000000000 22.8630706599 0.0000000000 0.0000000000 -1.0000000000 55.4840000000 4 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/3 0.5000000000 0.8660254038 0.0000000000 -13.2000000000 0.8660254038 -0.5000000000 0.0000000000 22.8630706599 0.0000000000 0.0000000000 -1.0000000000 55.4840000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DC 2 "O3'" ? ? ? 1_555 A BRU 3 P ? ? A DC 2 A BRU 3 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale2 covale both ? A BRU 3 "O3'" ? ? ? 1_555 A DC 4 P ? ? A BRU 3 A DC 4 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale3 covale both ? A DA 7 "O3'" ? ? ? 1_555 A BRU 8 P ? ? A DA 7 A BRU 8 1_555 ? ? ? ? ? ? ? 1.622 ? ? covale4 covale both ? A BRU 8 "O3'" ? ? ? 1_555 A DG 9 P ? ? A BRU 8 A DG 9 1_555 ? ? ? ? ? ? ? 1.611 ? ? hydrog1 hydrog ? ? A DA 1 N6 ? ? ? 1_555 A DA 1 N7 ? ? A DA 1 A DA 1 4_775 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog2 hydrog ? ? A DA 1 N7 ? ? ? 1_555 A DA 1 N6 ? ? A DA 1 A DA 1 4_775 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog3 hydrog ? ? A DC 4 N4 ? ? ? 1_555 A DC 4 O2 ? ? A DC 4 A DC 4 4_775 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog4 hydrog ? ? A DC 4 O2 ? ? ? 1_555 A DC 4 N4 ? ? A DC 4 A DC 4 4_775 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog5 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DG 5 N3 ? ? A DG 5 A DG 5 4_775 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog6 hydrog ? ? A DG 5 N3 ? ? ? 1_555 A DG 5 N2 ? ? A DG 5 A DG 5 4_775 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog7 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DG 6 N3 ? ? A DG 6 A DG 6 4_775 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog8 hydrog ? ? A DG 6 N3 ? ? ? 1_555 A DG 6 N2 ? ? A DG 6 A DG 6 4_775 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog9 hydrog ? ? A DA 7 N6 ? ? ? 1_555 A DA 7 N7 ? ? A DA 7 A DA 7 4_775 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog10 hydrog ? ? A DA 7 N7 ? ? ? 1_555 A DA 7 N6 ? ? A DA 7 A DA 7 4_775 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog11 hydrog ? ? A BRU 8 N3 ? ? ? 1_555 A BRU 8 O4 ? ? A BRU 8 A BRU 8 4_775 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog12 hydrog ? ? A BRU 8 O4 ? ? ? 1_555 A BRU 8 N3 ? ? A BRU 8 A BRU 8 4_775 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog13 hydrog ? ? A DA 10 N6 ? ? ? 1_555 A DA 10 N7 ? ? A DA 10 A DA 10 4_775 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog14 hydrog ? ? A DA 10 N7 ? ? ? 1_555 A DA 10 N6 ? ? A DA 10 A DA 10 4_775 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 125 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 125 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_765 _pdbx_validate_symm_contact.dist 1.96 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A BRU 3 A BRU 3 ? DU ? 2 A BRU 8 A BRU 8 ? DU ? # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 115 ? B HOH . 2 1 A HOH 121 ? B HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BRU N1 N N N 1 BRU C2 C N N 2 BRU N3 N N N 3 BRU C4 C N N 4 BRU C5 C N N 5 BRU C6 C N N 6 BRU O2 O N N 7 BRU O4 O N N 8 BRU BR BR N N 9 BRU "C1'" C N R 10 BRU "C2'" C N N 11 BRU "C3'" C N S 12 BRU "C4'" C N R 13 BRU "O3'" O N N 14 BRU "O4'" O N N 15 BRU "C5'" C N N 16 BRU "O5'" O N N 17 BRU P P N N 18 BRU OP1 O N N 19 BRU OP2 O N N 20 BRU OP3 O N N 21 BRU HN3 H N N 22 BRU H6 H N N 23 BRU "H1'" H N N 24 BRU "H2'" H N N 25 BRU "H2''" H N N 26 BRU "H3'" H N N 27 BRU "H4'" H N N 28 BRU "HO3'" H N N 29 BRU "H5'" H N N 30 BRU "H5''" H N N 31 BRU HOP2 H N N 32 BRU HOP3 H N N 33 DA OP3 O N N 34 DA P P N N 35 DA OP1 O N N 36 DA OP2 O N N 37 DA "O5'" O N N 38 DA "C5'" C N N 39 DA "C4'" C N R 40 DA "O4'" O N N 41 DA "C3'" C N S 42 DA "O3'" O N N 43 DA "C2'" C N N 44 DA "C1'" C N R 45 DA N9 N Y N 46 DA C8 C Y N 47 DA N7 N Y N 48 DA C5 C Y N 49 DA C6 C Y N 50 DA N6 N N N 51 DA N1 N Y N 52 DA C2 C Y N 53 DA N3 N Y N 54 DA C4 C Y N 55 DA HOP3 H N N 56 DA HOP2 H N N 57 DA "H5'" H N N 58 DA "H5''" H N N 59 DA "H4'" H N N 60 DA "H3'" H N N 61 DA "HO3'" H N N 62 DA "H2'" H N N 63 DA "H2''" H N N 64 DA "H1'" H N N 65 DA H8 H N N 66 DA H61 H N N 67 DA H62 H N N 68 DA H2 H N N 69 DC OP3 O N N 70 DC P P N N 71 DC OP1 O N N 72 DC OP2 O N N 73 DC "O5'" O N N 74 DC "C5'" C N N 75 DC "C4'" C N R 76 DC "O4'" O N N 77 DC "C3'" C N S 78 DC "O3'" O N N 79 DC "C2'" C N N 80 DC "C1'" C N R 81 DC N1 N N N 82 DC C2 C N N 83 DC O2 O N N 84 DC N3 N N N 85 DC C4 C N N 86 DC N4 N N N 87 DC C5 C N N 88 DC C6 C N N 89 DC HOP3 H N N 90 DC HOP2 H N N 91 DC "H5'" H N N 92 DC "H5''" H N N 93 DC "H4'" H N N 94 DC "H3'" H N N 95 DC "HO3'" H N N 96 DC "H2'" H N N 97 DC "H2''" H N N 98 DC "H1'" H N N 99 DC H41 H N N 100 DC H42 H N N 101 DC H5 H N N 102 DC H6 H N N 103 DG OP3 O N N 104 DG P P N N 105 DG OP1 O N N 106 DG OP2 O N N 107 DG "O5'" O N N 108 DG "C5'" C N N 109 DG "C4'" C N R 110 DG "O4'" O N N 111 DG "C3'" C N S 112 DG "O3'" O N N 113 DG "C2'" C N N 114 DG "C1'" C N R 115 DG N9 N Y N 116 DG C8 C Y N 117 DG N7 N Y N 118 DG C5 C Y N 119 DG C6 C N N 120 DG O6 O N N 121 DG N1 N N N 122 DG C2 C N N 123 DG N2 N N N 124 DG N3 N N N 125 DG C4 C Y N 126 DG HOP3 H N N 127 DG HOP2 H N N 128 DG "H5'" H N N 129 DG "H5''" H N N 130 DG "H4'" H N N 131 DG "H3'" H N N 132 DG "HO3'" H N N 133 DG "H2'" H N N 134 DG "H2''" H N N 135 DG "H1'" H N N 136 DG H8 H N N 137 DG H1 H N N 138 DG H21 H N N 139 DG H22 H N N 140 DT OP3 O N N 141 DT P P N N 142 DT OP1 O N N 143 DT OP2 O N N 144 DT "O5'" O N N 145 DT "C5'" C N N 146 DT "C4'" C N R 147 DT "O4'" O N N 148 DT "C3'" C N S 149 DT "O3'" O N N 150 DT "C2'" C N N 151 DT "C1'" C N R 152 DT N1 N N N 153 DT C2 C N N 154 DT O2 O N N 155 DT N3 N N N 156 DT C4 C N N 157 DT O4 O N N 158 DT C5 C N N 159 DT C7 C N N 160 DT C6 C N N 161 DT HOP3 H N N 162 DT HOP2 H N N 163 DT "H5'" H N N 164 DT "H5''" H N N 165 DT "H4'" H N N 166 DT "H3'" H N N 167 DT "HO3'" H N N 168 DT "H2'" H N N 169 DT "H2''" H N N 170 DT "H1'" H N N 171 DT H3 H N N 172 DT H71 H N N 173 DT H72 H N N 174 DT H73 H N N 175 DT H6 H N N 176 HOH O O N N 177 HOH H1 H N N 178 HOH H2 H N N 179 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BRU N1 C2 sing N N 1 BRU N1 C6 sing N N 2 BRU N1 "C1'" sing N N 3 BRU C2 N3 sing N N 4 BRU C2 O2 doub N N 5 BRU N3 C4 sing N N 6 BRU N3 HN3 sing N N 7 BRU C4 C5 sing N N 8 BRU C4 O4 doub N N 9 BRU C5 C6 doub N N 10 BRU C5 BR sing N N 11 BRU C6 H6 sing N N 12 BRU "C1'" "C2'" sing N N 13 BRU "C1'" "O4'" sing N N 14 BRU "C1'" "H1'" sing N N 15 BRU "C2'" "C3'" sing N N 16 BRU "C2'" "H2'" sing N N 17 BRU "C2'" "H2''" sing N N 18 BRU "C3'" "C4'" sing N N 19 BRU "C3'" "O3'" sing N N 20 BRU "C3'" "H3'" sing N N 21 BRU "C4'" "O4'" sing N N 22 BRU "C4'" "C5'" sing N N 23 BRU "C4'" "H4'" sing N N 24 BRU "O3'" "HO3'" sing N N 25 BRU "C5'" "O5'" sing N N 26 BRU "C5'" "H5'" sing N N 27 BRU "C5'" "H5''" sing N N 28 BRU "O5'" P sing N N 29 BRU P OP1 doub N N 30 BRU P OP2 sing N N 31 BRU P OP3 sing N N 32 BRU OP2 HOP2 sing N N 33 BRU OP3 HOP3 sing N N 34 DA OP3 P sing N N 35 DA OP3 HOP3 sing N N 36 DA P OP1 doub N N 37 DA P OP2 sing N N 38 DA P "O5'" sing N N 39 DA OP2 HOP2 sing N N 40 DA "O5'" "C5'" sing N N 41 DA "C5'" "C4'" sing N N 42 DA "C5'" "H5'" sing N N 43 DA "C5'" "H5''" sing N N 44 DA "C4'" "O4'" sing N N 45 DA "C4'" "C3'" sing N N 46 DA "C4'" "H4'" sing N N 47 DA "O4'" "C1'" sing N N 48 DA "C3'" "O3'" sing N N 49 DA "C3'" "C2'" sing N N 50 DA "C3'" "H3'" sing N N 51 DA "O3'" "HO3'" sing N N 52 DA "C2'" "C1'" sing N N 53 DA "C2'" "H2'" sing N N 54 DA "C2'" "H2''" sing N N 55 DA "C1'" N9 sing N N 56 DA "C1'" "H1'" sing N N 57 DA N9 C8 sing Y N 58 DA N9 C4 sing Y N 59 DA C8 N7 doub Y N 60 DA C8 H8 sing N N 61 DA N7 C5 sing Y N 62 DA C5 C6 sing Y N 63 DA C5 C4 doub Y N 64 DA C6 N6 sing N N 65 DA C6 N1 doub Y N 66 DA N6 H61 sing N N 67 DA N6 H62 sing N N 68 DA N1 C2 sing Y N 69 DA C2 N3 doub Y N 70 DA C2 H2 sing N N 71 DA N3 C4 sing Y N 72 DC OP3 P sing N N 73 DC OP3 HOP3 sing N N 74 DC P OP1 doub N N 75 DC P OP2 sing N N 76 DC P "O5'" sing N N 77 DC OP2 HOP2 sing N N 78 DC "O5'" "C5'" sing N N 79 DC "C5'" "C4'" sing N N 80 DC "C5'" "H5'" sing N N 81 DC "C5'" "H5''" sing N N 82 DC "C4'" "O4'" sing N N 83 DC "C4'" "C3'" sing N N 84 DC "C4'" "H4'" sing N N 85 DC "O4'" "C1'" sing N N 86 DC "C3'" "O3'" sing N N 87 DC "C3'" "C2'" sing N N 88 DC "C3'" "H3'" sing N N 89 DC "O3'" "HO3'" sing N N 90 DC "C2'" "C1'" sing N N 91 DC "C2'" "H2'" sing N N 92 DC "C2'" "H2''" sing N N 93 DC "C1'" N1 sing N N 94 DC "C1'" "H1'" sing N N 95 DC N1 C2 sing N N 96 DC N1 C6 sing N N 97 DC C2 O2 doub N N 98 DC C2 N3 sing N N 99 DC N3 C4 doub N N 100 DC C4 N4 sing N N 101 DC C4 C5 sing N N 102 DC N4 H41 sing N N 103 DC N4 H42 sing N N 104 DC C5 C6 doub N N 105 DC C5 H5 sing N N 106 DC C6 H6 sing N N 107 DG OP3 P sing N N 108 DG OP3 HOP3 sing N N 109 DG P OP1 doub N N 110 DG P OP2 sing N N 111 DG P "O5'" sing N N 112 DG OP2 HOP2 sing N N 113 DG "O5'" "C5'" sing N N 114 DG "C5'" "C4'" sing N N 115 DG "C5'" "H5'" sing N N 116 DG "C5'" "H5''" sing N N 117 DG "C4'" "O4'" sing N N 118 DG "C4'" "C3'" sing N N 119 DG "C4'" "H4'" sing N N 120 DG "O4'" "C1'" sing N N 121 DG "C3'" "O3'" sing N N 122 DG "C3'" "C2'" sing N N 123 DG "C3'" "H3'" sing N N 124 DG "O3'" "HO3'" sing N N 125 DG "C2'" "C1'" sing N N 126 DG "C2'" "H2'" sing N N 127 DG "C2'" "H2''" sing N N 128 DG "C1'" N9 sing N N 129 DG "C1'" "H1'" sing N N 130 DG N9 C8 sing Y N 131 DG N9 C4 sing Y N 132 DG C8 N7 doub Y N 133 DG C8 H8 sing N N 134 DG N7 C5 sing Y N 135 DG C5 C6 sing N N 136 DG C5 C4 doub Y N 137 DG C6 O6 doub N N 138 DG C6 N1 sing N N 139 DG N1 C2 sing N N 140 DG N1 H1 sing N N 141 DG C2 N2 sing N N 142 DG C2 N3 doub N N 143 DG N2 H21 sing N N 144 DG N2 H22 sing N N 145 DG N3 C4 sing N N 146 DT OP3 P sing N N 147 DT OP3 HOP3 sing N N 148 DT P OP1 doub N N 149 DT P OP2 sing N N 150 DT P "O5'" sing N N 151 DT OP2 HOP2 sing N N 152 DT "O5'" "C5'" sing N N 153 DT "C5'" "C4'" sing N N 154 DT "C5'" "H5'" sing N N 155 DT "C5'" "H5''" sing N N 156 DT "C4'" "O4'" sing N N 157 DT "C4'" "C3'" sing N N 158 DT "C4'" "H4'" sing N N 159 DT "O4'" "C1'" sing N N 160 DT "C3'" "O3'" sing N N 161 DT "C3'" "C2'" sing N N 162 DT "C3'" "H3'" sing N N 163 DT "O3'" "HO3'" sing N N 164 DT "C2'" "C1'" sing N N 165 DT "C2'" "H2'" sing N N 166 DT "C2'" "H2''" sing N N 167 DT "C1'" N1 sing N N 168 DT "C1'" "H1'" sing N N 169 DT N1 C2 sing N N 170 DT N1 C6 sing N N 171 DT C2 O2 doub N N 172 DT C2 N3 sing N N 173 DT N3 C4 sing N N 174 DT N3 H3 sing N N 175 DT C4 O4 doub N N 176 DT C4 C5 sing N N 177 DT C5 C7 sing N N 178 DT C5 C6 doub N N 179 DT C7 H71 sing N N 180 DT C7 H72 sing N N 181 DT C7 H73 sing N N 182 DT C6 H6 sing N N 183 HOH O H1 sing N N 184 HOH O H2 sing N N 185 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4RIP 'double helix' 4RIP 'parallel strands' 4RIP 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 A DA 1 4_775 5.647 -5.121 0.000 8.518 -26.168 180.000 1 A_DA1:DA1_A A 1 ? A 1 ? 2 8 1 A DC 4 1_555 A DC 4 4_775 -1.833 -1.439 0.000 -0.422 4.449 -180.000 2 A_DC4:DC4_A A 4 ? A 4 ? 15 2 1 A DG 5 1_555 A DG 5 4_775 0.474 -6.955 0.000 22.991 -23.511 -180.000 3 A_DG5:DG5_A A 5 ? A 5 ? 4 12 1 A DG 6 1_555 A DG 6 4_775 3.176 8.064 0.000 -17.247 23.660 180.000 4 A_DG6:DG6_A A 6 ? A 6 ? 4 12 1 A DA 7 1_555 A DA 7 4_775 5.827 -5.288 0.000 31.485 -18.428 180.000 5 A_DA7:DA7_A A 7 ? A 7 ? 2 7 1 A BRU 8 1_555 A BRU 8 4_775 1.573 -2.307 0.000 9.571 -14.863 180.000 6 A_BRU8:BRU8_A A 8 ? A 8 ? 12 2 1 A DA 10 1_555 A DA 10 4_775 5.343 -5.560 0.000 14.878 -36.747 180.000 7 A_DA10:DA10_A A 10 ? A 10 ? 2 7 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 4 1_555 A DC 4 4_775 A DG 5 1_555 A DG 5 4_775 0.000 -0.895 2.715 0.000 0.000 31.980 1.354 -3.440 1.795 -29.571 38.573 31.980 1 AA_DC4DG5:DG5DC4_AA A 4 ? A 4 ? A 5 ? A 5 ? 1 A DG 5 1_555 A DG 5 4_775 A DG 6 1_555 A DG 6 4_775 0.000 -6.023 7.074 0.000 0.000 -159.900 -0.018 0.924 6.695 18.471 3.656 -159.900 2 AA_DG5DG6:DG6DG5_AA A 5 ? A 5 ? A 6 ? A 6 ? 1 A DG 6 1_555 A DG 6 4_775 A DA 7 1_555 A DA 7 4_775 0.000 0.000 4.429 0.000 0.000 -13.233 0.000 0.000 4.429 0.000 0.000 -13.233 3 AA_DG6DA7:DA7DG6_AA A 6 ? A 6 ? A 7 ? A 7 ? 1 A DA 7 1_555 A DA 7 4_775 A BRU 8 1_555 A BRU 8 4_775 0.000 0.000 3.422 0.000 0.000 51.986 0.000 0.000 3.422 0.000 0.000 51.986 4 AA_DA7BRU8:BRU8DA7_AA A 7 ? A 7 ? A 8 ? A 8 ? 1 A BRU 8 1_555 A BRU 8 4_775 A DA 10 1_555 A DA 10 4_775 0.000 0.000 7.448 0.000 0.000 66.151 0.000 0.000 7.448 0.000 0.000 66.151 5 AA_BRU8DA10:DA10BRU8_AA A 8 ? A 8 ? A 10 ? A 10 ? # _atom_sites.entry_id 4RIP _atom_sites.fract_transf_matrix[1][1] 0.037879 _atom_sites.fract_transf_matrix[1][2] 0.021869 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.043739 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006008 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DA A 1 1 ? 9.677 16.544 22.443 1.00 20.70 ? 1 DA A "O5'" 1 ATOM 2 C "C5'" . DA A 1 1 ? 9.474 16.733 21.056 1.00 21.55 ? 1 DA A "C5'" 1 ATOM 3 C "C4'" . DA A 1 1 ? 8.343 17.714 20.834 1.00 21.48 ? 1 DA A "C4'" 1 ATOM 4 O "O4'" . DA A 1 1 ? 8.834 19.076 21.002 1.00 19.32 ? 1 DA A "O4'" 1 ATOM 5 C "C3'" . DA A 1 1 ? 7.731 17.669 19.437 1.00 24.38 ? 1 DA A "C3'" 1 ATOM 6 O "O3'" . DA A 1 1 ? 6.373 18.042 19.539 1.00 26.14 ? 1 DA A "O3'" 1 ATOM 7 C "C2'" . DA A 1 1 ? 8.490 18.775 18.719 1.00 23.50 ? 1 DA A "C2'" 1 ATOM 8 C "C1'" . DA A 1 1 ? 8.553 19.823 19.836 1.00 21.09 ? 1 DA A "C1'" 1 ATOM 9 N N9 . DA A 1 1 ? 9.629 20.787 19.594 1.00 20.57 ? 1 DA A N9 1 ATOM 10 C C8 . DA A 1 1 ? 10.980 20.548 19.563 1.00 19.28 ? 1 DA A C8 1 ATOM 11 N N7 . DA A 1 1 ? 11.701 21.616 19.291 1.00 19.38 ? 1 DA A N7 1 ATOM 12 C C5 . DA A 1 1 ? 10.755 22.627 19.130 1.00 19.75 ? 1 DA A C5 1 ATOM 13 C C6 . DA A 1 1 ? 10.858 24.013 18.825 1.00 20.36 ? 1 DA A C6 1 ATOM 14 N N6 . DA A 1 1 ? 12.010 24.676 18.613 1.00 19.79 ? 1 DA A N6 1 ATOM 15 N N1 . DA A 1 1 ? 9.715 24.721 18.737 1.00 20.75 ? 1 DA A N1 1 ATOM 16 C C2 . DA A 1 1 ? 8.548 24.084 18.935 1.00 19.77 ? 1 DA A C2 1 ATOM 17 N N3 . DA A 1 1 ? 8.326 22.798 19.227 1.00 18.69 ? 1 DA A N3 1 ATOM 18 C C4 . DA A 1 1 ? 9.479 22.124 19.309 1.00 19.06 ? 1 DA A C4 1 ATOM 19 P P . DC A 1 2 ? 5.211 16.948 19.334 1.00 27.36 ? 2 DC A P 1 ATOM 20 O OP1 . DC A 1 2 ? 5.719 15.900 18.404 1.00 28.99 ? 2 DC A OP1 1 ATOM 21 O OP2 . DC A 1 2 ? 3.938 17.681 19.045 1.00 27.63 ? 2 DC A OP2 1 ATOM 22 O "O5'" . DC A 1 2 ? 5.120 16.228 20.766 1.00 26.06 ? 2 DC A "O5'" 1 ATOM 23 C "C5'" . DC A 1 2 ? 4.697 16.923 21.933 1.00 26.52 ? 2 DC A "C5'" 1 ATOM 24 C "C4'" . DC A 1 2 ? 4.403 15.847 22.964 1.00 27.98 ? 2 DC A "C4'" 1 ATOM 25 O "O4'" . DC A 1 2 ? 3.170 15.181 22.608 1.00 28.73 ? 2 DC A "O4'" 1 ATOM 26 C "C3'" . DC A 1 2 ? 5.441 14.720 23.067 1.00 26.70 ? 2 DC A "C3'" 1 ATOM 27 O "O3'" . DC A 1 2 ? 5.773 14.550 24.441 1.00 26.57 ? 2 DC A "O3'" 1 ATOM 28 C "C2'" . DC A 1 2 ? 4.774 13.476 22.482 1.00 25.45 ? 2 DC A "C2'" 1 ATOM 29 C "C1'" . DC A 1 2 ? 3.333 13.793 22.823 1.00 26.26 ? 2 DC A "C1'" 1 ATOM 30 N N1 . DC A 1 2 ? 2.326 13.129 21.962 1.00 27.29 ? 2 DC A N1 1 ATOM 31 C C2 . DC A 1 2 ? 1.128 12.785 22.600 1.00 25.76 ? 2 DC A C2 1 ATOM 32 O O2 . DC A 1 2 ? 1.010 13.049 23.810 1.00 25.20 ? 2 DC A O2 1 ATOM 33 N N3 . DC A 1 2 ? 0.153 12.183 21.877 1.00 26.23 ? 2 DC A N3 1 ATOM 34 C C4 . DC A 1 2 ? 0.361 11.940 20.575 1.00 25.38 ? 2 DC A C4 1 ATOM 35 N N4 . DC A 1 2 ? -0.642 11.336 19.919 1.00 26.21 ? 2 DC A N4 1 ATOM 36 C C5 . DC A 1 2 ? 1.576 12.290 19.900 1.00 23.09 ? 2 DC A C5 1 ATOM 37 C C6 . DC A 1 2 ? 2.535 12.886 20.625 1.00 24.82 ? 2 DC A C6 1 HETATM 38 N N1 . BRU A 1 3 ? 10.982 13.334 22.909 1.00 24.56 ? 3 BRU A N1 1 HETATM 39 C C2 . BRU A 1 3 ? 12.029 13.796 22.083 1.00 23.13 ? 3 BRU A C2 1 HETATM 40 N N3 . BRU A 1 3 ? 11.848 13.986 20.763 1.00 25.43 ? 3 BRU A N3 1 HETATM 41 C C4 . BRU A 1 3 ? 10.658 13.731 20.187 1.00 24.76 ? 3 BRU A C4 1 HETATM 42 C C5 . BRU A 1 3 ? 9.545 13.231 21.041 1.00 25.45 ? 3 BRU A C5 1 HETATM 43 C C6 . BRU A 1 3 ? 9.770 13.049 22.403 1.00 24.14 ? 3 BRU A C6 1 HETATM 44 O O2 . BRU A 1 3 ? 13.145 14.038 22.603 1.00 23.93 ? 3 BRU A O2 1 HETATM 45 O O4 . BRU A 1 3 ? 10.472 13.910 18.950 1.00 22.59 ? 3 BRU A O4 1 HETATM 46 BR BR . BRU A 1 3 ? 7.840 12.874 20.278 0.75 31.36 ? 3 BRU A BR 1 HETATM 47 C "C1'" . BRU A 1 3 ? 11.224 13.112 24.340 1.00 24.11 ? 3 BRU A "C1'" 1 HETATM 48 C "C2'" . BRU A 1 3 ? 11.129 14.385 25.174 1.00 23.17 ? 3 BRU A "C2'" 1 HETATM 49 C "C3'" . BRU A 1 3 ? 10.533 13.859 26.468 1.00 25.62 ? 3 BRU A "C3'" 1 HETATM 50 C "C4'" . BRU A 1 3 ? 9.710 12.641 26.084 1.00 25.78 ? 3 BRU A "C4'" 1 HETATM 51 O "O3'" . BRU A 1 3 ? 11.612 13.303 27.225 1.00 27.11 ? 3 BRU A "O3'" 1 HETATM 52 O "O4'" . BRU A 1 3 ? 10.197 12.226 24.810 1.00 23.50 ? 3 BRU A "O4'" 1 HETATM 53 C "C5'" . BRU A 1 3 ? 8.235 12.964 25.952 1.00 25.13 ? 3 BRU A "C5'" 1 HETATM 54 O "O5'" . BRU A 1 3 ? 8.184 13.961 24.932 1.00 27.59 ? 3 BRU A "O5'" 1 HETATM 55 P P . BRU A 1 3 ? 7.135 15.185 25.018 1.00 26.65 ? 3 BRU A P 1 HETATM 56 O OP1 . BRU A 1 3 ? 6.939 15.491 26.491 1.00 28.26 ? 3 BRU A OP1 1 HETATM 57 O OP2 . BRU A 1 3 ? 7.585 16.282 24.060 1.00 25.61 ? 3 BRU A OP2 1 ATOM 58 P P . DC A 1 4 ? 11.942 13.830 28.708 1.00 25.99 ? 4 DC A P 1 ATOM 59 O OP1 . DC A 1 4 ? 12.862 12.839 29.335 1.00 25.69 ? 4 DC A OP1 1 ATOM 60 O OP2 . DC A 1 4 ? 10.661 14.235 29.364 1.00 25.68 ? 4 DC A OP2 1 ATOM 61 O "O5'" . DC A 1 4 ? 12.764 15.178 28.451 1.00 22.62 ? 4 DC A "O5'" 1 ATOM 62 C "C5'" . DC A 1 4 ? 13.923 15.109 27.619 1.00 22.03 ? 4 DC A "C5'" 1 ATOM 63 C "C4'" . DC A 1 4 ? 14.923 16.126 28.133 1.00 21.58 ? 4 DC A "C4'" 1 ATOM 64 O "O4'" . DC A 1 4 ? 14.356 17.457 27.968 1.00 20.22 ? 4 DC A "O4'" 1 ATOM 65 C "C3'" . DC A 1 4 ? 15.295 16.024 29.610 1.00 21.20 ? 4 DC A "C3'" 1 ATOM 66 O "O3'" . DC A 1 4 ? 16.669 16.358 29.669 1.00 23.14 ? 4 DC A "O3'" 1 ATOM 67 C "C2'" . DC A 1 4 ? 14.434 17.110 30.251 1.00 19.60 ? 4 DC A "C2'" 1 ATOM 68 C "C1'" . DC A 1 4 ? 14.519 18.189 29.172 1.00 19.21 ? 4 DC A "C1'" 1 ATOM 69 N N1 . DC A 1 4 ? 13.436 19.217 29.219 1.00 18.03 ? 4 DC A N1 1 ATOM 70 C C2 . DC A 1 4 ? 13.766 20.568 29.287 1.00 17.42 ? 4 DC A C2 1 ATOM 71 O O2 . DC A 1 4 ? 14.955 20.922 29.316 1.00 18.20 ? 4 DC A O2 1 ATOM 72 N N3 . DC A 1 4 ? 12.763 21.474 29.323 1.00 19.38 ? 4 DC A N3 1 ATOM 73 C C4 . DC A 1 4 ? 11.478 21.091 29.300 1.00 19.80 ? 4 DC A C4 1 ATOM 74 N N4 . DC A 1 4 ? 10.547 22.067 29.353 1.00 17.47 ? 4 DC A N4 1 ATOM 75 C C5 . DC A 1 4 ? 11.115 19.705 29.237 1.00 18.15 ? 4 DC A C5 1 ATOM 76 C C6 . DC A 1 4 ? 12.120 18.821 29.195 1.00 18.65 ? 4 DC A C6 1 ATOM 77 P P . DG A 1 5 ? 17.557 15.963 30.951 1.00 21.70 ? 5 DG A P 1 ATOM 78 O OP1 . DG A 1 5 ? 18.992 16.008 30.546 1.00 22.69 ? 5 DG A OP1 1 ATOM 79 O OP2 . DG A 1 5 ? 16.989 14.717 31.539 1.00 23.85 ? 5 DG A OP2 1 ATOM 80 O "O5'" . DG A 1 5 ? 17.289 17.173 31.965 1.00 21.68 ? 5 DG A "O5'" 1 ATOM 81 C "C5'" . DG A 1 5 ? 17.660 18.524 31.612 1.00 19.61 ? 5 DG A "C5'" 1 ATOM 82 C "C4'" . DG A 1 5 ? 17.137 19.459 32.688 1.00 19.76 ? 5 DG A "C4'" 1 ATOM 83 O "O4'" . DG A 1 5 ? 15.708 19.642 32.506 1.00 20.35 ? 5 DG A "O4'" 1 ATOM 84 C "C3'" . DG A 1 5 ? 17.287 18.970 34.126 1.00 20.35 ? 5 DG A "C3'" 1 ATOM 85 O "O3'" . DG A 1 5 ? 17.581 20.112 34.933 1.00 22.38 ? 5 DG A "O3'" 1 ATOM 86 C "C2'" . DG A 1 5 ? 15.905 18.388 34.444 1.00 19.95 ? 5 DG A "C2'" 1 ATOM 87 C "C1'" . DG A 1 5 ? 15.037 19.423 33.736 1.00 19.95 ? 5 DG A "C1'" 1 ATOM 88 N N9 . DG A 1 5 ? 13.667 18.991 33.426 1.00 20.12 ? 5 DG A N9 1 ATOM 89 C C8 . DG A 1 5 ? 13.186 17.698 33.397 1.00 18.48 ? 5 DG A C8 1 ATOM 90 N N7 . DG A 1 5 ? 11.915 17.621 33.076 1.00 17.93 ? 5 DG A N7 1 ATOM 91 C C5 . DG A 1 5 ? 11.525 18.943 32.879 1.00 18.78 ? 5 DG A C5 1 ATOM 92 C C6 . DG A 1 5 ? 10.267 19.483 32.510 1.00 19.10 ? 5 DG A C6 1 ATOM 93 O O6 . DG A 1 5 ? 9.207 18.868 32.284 1.00 19.12 ? 5 DG A O6 1 ATOM 94 N N1 . DG A 1 5 ? 10.300 20.882 32.408 1.00 17.85 ? 5 DG A N1 1 ATOM 95 C C2 . DG A 1 5 ? 11.426 21.652 32.636 1.00 18.47 ? 5 DG A C2 1 ATOM 96 N N2 . DG A 1 5 ? 11.295 22.986 32.501 1.00 18.60 ? 5 DG A N2 1 ATOM 97 N N3 . DG A 1 5 ? 12.614 21.152 32.977 1.00 19.19 ? 5 DG A N3 1 ATOM 98 C C4 . DG A 1 5 ? 12.592 19.800 33.082 1.00 18.72 ? 5 DG A C4 1 ATOM 99 P P . DG A 1 6 ? 18.249 19.930 36.395 1.00 22.00 ? 6 DG A P 1 ATOM 100 O OP1 . DG A 1 6 ? 18.487 21.285 36.958 1.00 21.28 ? 6 DG A OP1 1 ATOM 101 O OP2 . DG A 1 6 ? 19.364 18.950 36.276 1.00 20.37 ? 6 DG A OP2 1 ATOM 102 O "O5'" . DG A 1 6 ? 17.084 19.230 37.244 1.00 24.59 ? 6 DG A "O5'" 1 ATOM 103 C "C5'" . DG A 1 6 ? 17.354 18.411 38.365 1.00 23.74 ? 6 DG A "C5'" 1 ATOM 104 C "C4'" . DG A 1 6 ? 16.851 19.137 39.602 1.00 27.01 ? 6 DG A "C4'" 1 ATOM 105 O "O4'" . DG A 1 6 ? 15.449 19.485 39.458 1.00 26.83 ? 6 DG A "O4'" 1 ATOM 106 C "C3'" . DG A 1 6 ? 16.936 18.315 40.876 1.00 28.44 ? 6 DG A "C3'" 1 ATOM 107 O "O3'" . DG A 1 6 ? 17.420 19.165 41.901 1.00 35.28 ? 6 DG A "O3'" 1 ATOM 108 C "C2'" . DG A 1 6 ? 15.493 17.872 41.122 1.00 26.31 ? 6 DG A "C2'" 1 ATOM 109 C "C1'" . DG A 1 6 ? 14.748 19.107 40.631 1.00 25.84 ? 6 DG A "C1'" 1 ATOM 110 N N9 . DG A 1 6 ? 13.346 18.851 40.291 1.00 23.90 ? 6 DG A N9 1 ATOM 111 C C8 . DG A 1 6 ? 12.758 17.609 40.175 1.00 22.28 ? 6 DG A C8 1 ATOM 112 N N7 . DG A 1 6 ? 11.490 17.672 39.862 1.00 22.67 ? 6 DG A N7 1 ATOM 113 C C5 . DG A 1 6 ? 11.218 19.044 39.768 1.00 22.87 ? 6 DG A C5 1 ATOM 114 C C6 . DG A 1 6 ? 10.015 19.733 39.455 1.00 22.25 ? 6 DG A C6 1 ATOM 115 O O6 . DG A 1 6 ? 8.893 19.271 39.187 1.00 22.32 ? 6 DG A O6 1 ATOM 116 N N1 . DG A 1 6 ? 10.188 21.115 39.463 1.00 22.92 ? 6 DG A N1 1 ATOM 117 C C2 . DG A 1 6 ? 11.369 21.764 39.742 1.00 22.93 ? 6 DG A C2 1 ATOM 118 N N2 . DG A 1 6 ? 11.332 23.114 39.702 1.00 24.47 ? 6 DG A N2 1 ATOM 119 N N3 . DG A 1 6 ? 12.502 21.133 40.038 1.00 21.73 ? 6 DG A N3 1 ATOM 120 C C4 . DG A 1 6 ? 12.354 19.783 40.032 1.00 22.82 ? 6 DG A C4 1 ATOM 121 P P . DA A 1 7 ? 18.502 18.619 42.967 1.00 38.11 ? 7 DA A P 1 ATOM 122 O OP1 . DA A 1 7 ? 19.336 17.583 42.283 1.00 32.99 ? 7 DA A OP1 1 ATOM 123 O OP2 . DA A 1 7 ? 17.774 18.249 44.210 1.00 36.38 ? 7 DA A OP2 1 ATOM 124 O "O5'" . DA A 1 7 ? 19.369 19.925 43.314 1.00 36.07 ? 7 DA A "O5'" 1 ATOM 125 C "C5'" . DA A 1 7 ? 20.352 20.377 42.389 1.00 34.56 ? 7 DA A "C5'" 1 ATOM 126 C "C4'" . DA A 1 7 ? 20.217 21.873 42.237 1.00 35.20 ? 7 DA A "C4'" 1 ATOM 127 O "O4'" . DA A 1 7 ? 18.879 22.166 41.789 1.00 33.00 ? 7 DA A "O4'" 1 ATOM 128 C "C3'" . DA A 1 7 ? 20.372 22.719 43.498 1.00 38.35 ? 7 DA A "C3'" 1 ATOM 129 O "O3'" . DA A 1 7 ? 21.782 22.912 43.666 1.00 43.22 ? 7 DA A "O3'" 1 ATOM 130 C "C2'" . DA A 1 7 ? 19.682 24.012 43.062 1.00 37.17 ? 7 DA A "C2'" 1 ATOM 131 C "C1'" . DA A 1 7 ? 18.631 23.530 42.076 1.00 31.76 ? 7 DA A "C1'" 1 ATOM 132 N N9 . DA A 1 7 ? 17.253 23.666 42.542 1.00 31.51 ? 7 DA A N9 1 ATOM 133 C C8 . DA A 1 7 ? 16.340 22.678 42.819 1.00 30.91 ? 7 DA A C8 1 ATOM 134 N N7 . DA A 1 7 ? 15.166 23.139 43.198 1.00 29.95 ? 7 DA A N7 1 ATOM 135 C C5 . DA A 1 7 ? 15.333 24.517 43.161 1.00 28.29 ? 7 DA A C5 1 ATOM 136 C C6 . DA A 1 7 ? 14.470 25.583 43.447 1.00 28.18 ? 7 DA A C6 1 ATOM 137 N N6 . DA A 1 7 ? 13.203 25.398 43.843 1.00 29.06 ? 7 DA A N6 1 ATOM 138 N N1 . DA A 1 7 ? 14.952 26.838 43.307 1.00 27.35 ? 7 DA A N1 1 ATOM 139 C C2 . DA A 1 7 ? 16.218 27.010 42.907 1.00 26.01 ? 7 DA A C2 1 ATOM 140 N N3 . DA A 1 7 ? 17.123 26.083 42.608 1.00 29.04 ? 7 DA A N3 1 ATOM 141 C C4 . DA A 1 7 ? 16.607 24.857 42.760 1.00 28.49 ? 7 DA A C4 1 HETATM 142 N N1 . BRU A 1 8 ? 17.034 24.656 46.675 1.00 37.45 ? 8 BRU A N1 1 HETATM 143 C C2 . BRU A 1 8 ? 15.641 24.882 46.699 1.00 34.88 ? 8 BRU A C2 1 HETATM 144 N N3 . BRU A 1 8 ? 14.773 23.867 46.713 1.00 35.32 ? 8 BRU A N3 1 HETATM 145 C C4 . BRU A 1 8 ? 15.217 22.604 46.701 1.00 36.65 ? 8 BRU A C4 1 HETATM 146 C C5 . BRU A 1 8 ? 16.681 22.348 46.677 1.00 37.05 ? 8 BRU A C5 1 HETATM 147 C C6 . BRU A 1 8 ? 17.552 23.422 46.666 1.00 38.04 ? 8 BRU A C6 1 HETATM 148 O O2 . BRU A 1 8 ? 15.214 26.059 46.707 1.00 35.12 ? 8 BRU A O2 1 HETATM 149 O O4 . BRU A 1 8 ? 14.408 21.645 46.711 1.00 37.37 ? 8 BRU A O4 1 HETATM 150 BR BR . BRU A 1 8 ? 17.351 20.586 46.666 0.50 39.26 ? 8 BRU A BR 1 HETATM 151 C "C1'" . BRU A 1 8 ? 17.916 25.819 46.667 1.00 39.17 ? 8 BRU A "C1'" 1 HETATM 152 C "C2'" . BRU A 1 8 ? 18.745 25.893 47.945 1.00 42.58 ? 8 BRU A "C2'" 1 HETATM 153 C "C3'" . BRU A 1 8 ? 19.896 26.778 47.505 1.00 44.30 ? 8 BRU A "C3'" 1 HETATM 154 C "C4'" . BRU A 1 8 ? 19.999 26.563 45.999 1.00 41.47 ? 8 BRU A "C4'" 1 HETATM 155 O "O3'" . BRU A 1 8 ? 19.539 28.153 47.685 1.00 47.73 ? 8 BRU A "O3'" 1 HETATM 156 O "O4'" . BRU A 1 8 ? 18.879 25.755 45.613 1.00 37.92 ? 8 BRU A "O4'" 1 HETATM 157 C "C5'" . BRU A 1 8 ? 21.303 25.900 45.592 1.00 39.85 ? 8 BRU A "C5'" 1 HETATM 158 O "O5'" . BRU A 1 8 ? 21.144 24.483 45.582 1.00 40.02 ? 8 BRU A "O5'" 1 HETATM 159 P P . BRU A 1 8 ? 22.377 23.624 44.996 1.00 49.42 ? 8 BRU A P 1 HETATM 160 O OP1 . BRU A 1 8 ? 23.437 24.624 44.548 1.00 49.01 ? 8 BRU A OP1 1 HETATM 161 O OP2 . BRU A 1 8 ? 22.700 22.539 46.015 1.00 45.27 ? 8 BRU A OP2 1 ATOM 162 P P . DG A 1 9 ? 19.604 28.833 49.144 1.00 53.46 ? 9 DG A P 1 ATOM 163 O OP1 . DG A 1 9 ? 19.405 30.297 48.970 1.00 48.50 ? 9 DG A OP1 1 ATOM 164 O OP2 . DG A 1 9 ? 20.820 28.317 49.832 1.00 48.56 ? 9 DG A OP2 1 ATOM 165 O "O5'" . DG A 1 9 ? 18.314 28.240 49.901 1.00 45.42 ? 9 DG A "O5'" 1 ATOM 166 C "C5'" . DG A 1 9 ? 16.998 28.514 49.395 1.00 44.57 ? 9 DG A "C5'" 1 ATOM 167 C "C4'" . DG A 1 9 ? 15.946 27.708 50.141 1.00 45.21 ? 9 DG A "C4'" 1 ATOM 168 O "O4'" . DG A 1 9 ? 16.084 26.301 49.848 1.00 44.09 ? 9 DG A "O4'" 1 ATOM 169 C "C3'" . DG A 1 9 ? 16.012 27.829 51.664 1.00 49.00 ? 9 DG A "C3'" 1 ATOM 170 O "O3'" . DG A 1 9 ? 14.734 28.129 52.195 1.00 51.11 ? 9 DG A "O3'" 1 ATOM 171 C "C2'" . DG A 1 9 ? 16.499 26.484 52.171 1.00 45.18 ? 9 DG A "C2'" 1 ATOM 172 C "C1'" . DG A 1 9 ? 16.019 25.574 51.055 1.00 45.92 ? 9 DG A "C1'" 1 ATOM 173 N N9 . DG A 1 9 ? 16.907 24.438 50.938 1.00 46.18 ? 9 DG A N9 1 ATOM 174 C C8 . DG A 1 9 ? 18.273 24.426 51.134 1.00 47.87 ? 9 DG A C8 1 ATOM 175 N N7 . DG A 1 9 ? 18.802 23.242 50.964 1.00 48.31 ? 9 DG A N7 1 ATOM 176 C C5 . DG A 1 9 ? 17.708 22.435 50.640 1.00 46.48 ? 9 DG A C5 1 ATOM 177 C C6 . DG A 1 9 ? 17.647 21.053 50.343 1.00 48.06 ? 9 DG A C6 1 ATOM 178 O O6 . DG A 1 9 ? 18.595 20.243 50.313 1.00 51.27 ? 9 DG A O6 1 ATOM 179 N N1 . DG A 1 9 ? 16.330 20.642 50.067 1.00 45.79 ? 9 DG A N1 1 ATOM 180 C C2 . DG A 1 9 ? 15.209 21.456 50.074 1.00 42.55 ? 9 DG A C2 1 ATOM 181 N N2 . DG A 1 9 ? 14.025 20.878 49.788 1.00 40.13 ? 9 DG A N2 1 ATOM 182 N N3 . DG A 1 9 ? 15.259 22.754 50.350 1.00 43.09 ? 9 DG A N3 1 ATOM 183 C C4 . DG A 1 9 ? 16.531 23.159 50.619 1.00 44.68 ? 9 DG A C4 1 ATOM 184 P P . DA A 1 10 ? 14.523 29.481 53.036 1.00 57.52 ? 10 DA A P 1 ATOM 185 O OP1 . DA A 1 10 ? 15.557 30.462 52.596 1.00 51.66 ? 10 DA A OP1 1 ATOM 186 O OP2 . DA A 1 10 ? 14.408 29.107 54.471 1.00 53.50 ? 10 DA A OP2 1 ATOM 187 O "O5'" . DA A 1 10 ? 13.129 30.038 52.499 1.00 53.53 ? 10 DA A "O5'" 1 ATOM 188 C "C5'" . DA A 1 10 ? 11.992 29.775 53.264 1.00 53.87 ? 10 DA A "C5'" 1 ATOM 189 C "C4'" . DA A 1 10 ? 10.835 29.572 52.327 1.00 53.06 ? 10 DA A "C4'" 1 ATOM 190 O "O4'" . DA A 1 10 ? 10.917 28.233 51.792 1.00 48.11 ? 10 DA A "O4'" 1 ATOM 191 C "C3'" . DA A 1 10 ? 9.496 29.663 53.034 1.00 54.03 ? 10 DA A "C3'" 1 ATOM 192 O "O3'" . DA A 1 10 ? 8.514 30.118 52.114 1.00 55.74 ? 10 DA A "O3'" 1 ATOM 193 C "C2'" . DA A 1 10 ? 9.274 28.235 53.526 1.00 51.80 ? 10 DA A "C2'" 1 ATOM 194 C "C1'" . DA A 1 10 ? 9.932 27.430 52.413 1.00 47.93 ? 10 DA A "C1'" 1 ATOM 195 N N9 . DA A 1 10 ? 10.585 26.197 52.838 1.00 48.81 ? 10 DA A N9 1 ATOM 196 C C8 . DA A 1 10 ? 11.926 25.909 52.810 1.00 47.93 ? 10 DA A C8 1 ATOM 197 N N7 . DA A 1 10 ? 12.205 24.692 53.233 1.00 45.83 ? 10 DA A N7 1 ATOM 198 C C5 . DA A 1 10 ? 10.967 24.147 53.559 1.00 45.24 ? 10 DA A C5 1 ATOM 199 C C6 . DA A 1 10 ? 10.556 22.889 54.067 1.00 45.76 ? 10 DA A C6 1 ATOM 200 N N6 . DA A 1 10 ? 11.392 21.886 54.355 1.00 46.09 ? 10 DA A N6 1 ATOM 201 N N1 . DA A 1 10 ? 9.232 22.685 54.274 1.00 47.02 ? 10 DA A N1 1 ATOM 202 C C2 . DA A 1 10 ? 8.379 23.681 53.991 1.00 48.42 ? 10 DA A C2 1 ATOM 203 N N3 . DA A 1 10 ? 8.641 24.903 53.510 1.00 48.56 ? 10 DA A N3 1 ATOM 204 C C4 . DA A 1 10 ? 9.961 25.069 53.316 1.00 47.18 ? 10 DA A C4 1 ATOM 205 P P . DT A 1 11 ? 7.768 31.516 52.367 1.00 61.40 ? 11 DT A P 1 ATOM 206 O OP1 . DT A 1 11 ? 8.786 32.505 52.840 1.00 53.67 ? 11 DT A OP1 1 ATOM 207 O OP2 . DT A 1 11 ? 6.549 31.239 53.173 1.00 60.16 ? 11 DT A OP2 1 HETATM 208 O O . HOH B 2 . ? 12.110 17.705 26.115 1.00 17.34 ? 101 HOH A O 1 HETATM 209 O O . HOH B 2 . ? 10.946 18.806 23.740 1.00 17.30 ? 102 HOH A O 1 HETATM 210 O O . HOH B 2 . ? 6.885 19.550 31.140 1.00 18.84 ? 103 HOH A O 1 HETATM 211 O O . HOH B 2 . ? 18.000 22.549 38.935 1.00 24.64 ? 104 HOH A O 1 HETATM 212 O O . HOH B 2 . ? 8.018 20.739 28.857 1.00 20.40 ? 105 HOH A O 1 HETATM 213 O O . HOH B 2 . ? 21.895 15.782 31.282 1.00 26.31 ? 106 HOH A O 1 HETATM 214 O O . HOH B 2 . ? 8.437 27.114 17.873 1.00 21.89 ? 107 HOH A O 1 HETATM 215 O O . HOH B 2 . ? 19.416 14.877 28.423 1.00 24.94 ? 108 HOH A O 1 HETATM 216 O O . HOH B 2 . ? 4.644 13.125 18.495 1.00 28.25 ? 109 HOH A O 1 HETATM 217 O O . HOH B 2 . ? 9.671 16.500 30.174 1.00 26.13 ? 110 HOH A O 1 HETATM 218 O O . HOH B 2 . ? 15.380 18.687 48.281 1.00 43.12 ? 111 HOH A O 1 HETATM 219 O O . HOH B 2 . ? 0.880 16.128 21.639 1.00 32.28 ? 112 HOH A O 1 HETATM 220 O O . HOH B 2 . ? 7.635 15.674 16.343 1.00 32.96 ? 113 HOH A O 1 HETATM 221 O O . HOH B 2 . ? 10.306 15.739 16.755 1.00 31.10 ? 114 HOH A O 1 HETATM 222 O O . HOH B 2 . ? 6.600 11.431 17.515 0.50 29.96 ? 115 HOH A O 1 HETATM 223 O O . HOH B 2 . ? 8.141 29.290 19.559 1.00 27.10 ? 116 HOH A O 1 HETATM 224 O O . HOH B 2 . ? 10.017 16.902 27.660 1.00 25.47 ? 117 HOH A O 1 HETATM 225 O O . HOH B 2 . ? 22.657 13.770 31.720 1.00 32.11 ? 118 HOH A O 1 HETATM 226 O O . HOH B 2 . ? 5.955 16.839 30.470 1.00 35.01 ? 119 HOH A O 1 HETATM 227 O O . HOH B 2 . ? 19.179 16.287 36.272 1.00 27.84 ? 120 HOH A O 1 HETATM 228 O O . HOH B 2 . ? 15.400 26.673 55.484 0.50 48.25 ? 121 HOH A O 1 HETATM 229 O O . HOH B 2 . ? 15.204 14.668 33.374 1.00 26.49 ? 122 HOH A O 1 HETATM 230 O O . HOH B 2 . ? 15.206 18.915 44.748 1.00 36.85 ? 123 HOH A O 1 HETATM 231 O O . HOH B 2 . ? 8.875 12.844 29.550 1.00 35.30 ? 124 HOH A O 1 HETATM 232 O O . HOH B 2 . ? 20.289 12.278 29.283 1.00 34.03 ? 125 HOH A O 1 #