data_4E95 # _entry.id 4E95 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4E95 pdb_00004e95 10.2210/pdb4e95/pdb NDB NA1696 ? ? RCSB RCSB071325 ? ? WWPDB D_1000071325 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-03-20 2 'Structure model' 1 1 2017-03-08 3 'Structure model' 1 2 2017-11-15 4 'Structure model' 1 3 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 3 'Structure model' '_software.version' 4 4 'Structure model' '_database_2.pdbx_DOI' 5 4 'Structure model' '_database_2.pdbx_database_accession' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.value' 19 4 'Structure model' '_struct_conn.pdbx_dist_value' 20 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 21 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 26 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 27 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 30 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 31 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 32 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 33 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 34 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4E95 _pdbx_database_status.recvd_initial_deposition_date 2012-03-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4DX4 . unspecified PDB 4E7Y . unspecified PDB 4E87 . unspecified PDB 4E8S . unspecified PDB 4E8X . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hall, J.P.' 1 'Cardin, C.J.' 2 # _citation.id primary _citation.title 'The effects of disubstitution on the binding of ruthenium complexes to DNA' _citation.journal_abbrev 'Thesis, University of Reading' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year 2014 _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Hall, J.P.' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*CP*GP*GP*AP*TP*CP*CP*GP*G)-3'" 3045.992 1 ? ? ? ? 2 non-polymer syn 'BARIUM ION' 137.327 1 ? ? ? ? 3 non-polymer syn "(11,12-dimethyldipyrido[3,2-a:2',3'-c]phenazine-kappa~2~N~4~,N~5~)[bis(pyrazino[2,3-f]quinoxaline-kappa~2~N~1~,N~10~)]ruthenium(2+)" 775.785 1 ? ? ? ? 4 water nat water 18.015 38 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DC)(DG)(DG)(DA)(DT)(DC)(DC)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CCGGATCCGG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'BARIUM ION' BA 3 "(11,12-dimethyldipyrido[3,2-a:2',3'-c]phenazine-kappa~2~N~4~,N~5~)[bis(pyrazino[2,3-f]quinoxaline-kappa~2~N~1~,N~10~)]ruthenium(2+)" RML 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DG n 1 4 DG n 1 5 DA n 1 6 DT n 1 7 DC n 1 8 DC n 1 9 DG n 1 10 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details 'DNA Purchased from ATDBio' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BA non-polymer . 'BARIUM ION' ? 'Ba 2' 137.327 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 RML non-polymer . "(11,12-dimethyldipyrido[3,2-a:2',3'-c]phenazine-kappa~2~N~4~,N~5~)[bis(pyrazino[2,3-f]quinoxaline-kappa~2~N~1~,N~10~)]ruthenium(2+)" 'Lambda-[Ru(1,4,5,8-tetraazaphenanthrene)2(11,12-dimethyl-dipyridophenazine)]2+' 'C40 H26 N12 Ru 2' 775.785 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DT 6 6 6 DT DT A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DC 8 8 8 DC DC A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DG 10 10 10 DG DG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BA 1 101 1 BA BA A . C 3 RML 1 102 1 RML RML A . D 4 HOH 1 201 1 HOH HOH A . D 4 HOH 2 202 2 HOH HOH A . D 4 HOH 3 203 3 HOH HOH A . D 4 HOH 4 204 4 HOH HOH A . D 4 HOH 5 205 5 HOH HOH A . D 4 HOH 6 206 6 HOH HOH A . D 4 HOH 7 207 7 HOH HOH A . D 4 HOH 8 208 8 HOH HOH A . D 4 HOH 9 209 9 HOH HOH A . D 4 HOH 10 210 10 HOH HOH A . D 4 HOH 11 211 11 HOH HOH A . D 4 HOH 12 212 12 HOH HOH A . D 4 HOH 13 213 13 HOH HOH A . D 4 HOH 14 214 14 HOH HOH A . D 4 HOH 15 215 15 HOH HOH A . D 4 HOH 16 216 16 HOH HOH A . D 4 HOH 17 217 17 HOH HOH A . D 4 HOH 18 218 18 HOH HOH A . D 4 HOH 19 219 19 HOH HOH A . D 4 HOH 20 220 20 HOH HOH A . D 4 HOH 21 221 21 HOH HOH A . D 4 HOH 22 222 22 HOH HOH A . D 4 HOH 23 223 23 HOH HOH A . D 4 HOH 24 224 24 HOH HOH A . D 4 HOH 25 225 25 HOH HOH A . D 4 HOH 26 226 26 HOH HOH A . D 4 HOH 27 227 27 HOH HOH A . D 4 HOH 28 228 28 HOH HOH A . D 4 HOH 29 229 29 HOH HOH A . D 4 HOH 30 230 30 HOH HOH A . D 4 HOH 31 231 31 HOH HOH A . D 4 HOH 32 232 32 HOH HOH A . D 4 HOH 33 233 33 HOH HOH A . D 4 HOH 34 234 34 HOH HOH A . D 4 HOH 35 235 35 HOH HOH A . D 4 HOH 36 236 36 HOH HOH A . D 4 HOH 37 237 37 HOH HOH A . D 4 HOH 38 238 38 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal GDA 'data collection' . ? 1 SHELXCD phasing . ? 2 SHELXE 'model building' . ? 3 REFMAC refinement 5.6.0117 ? 4 XDS 'data reduction' . ? 5 SCALA 'data scaling' . ? 6 # _cell.entry_id 4E95 _cell.length_a 47.440 _cell.length_b 47.440 _cell.length_c 34.530 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4E95 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4E95 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.19 _exptl_crystal.density_percent_sol 61.43 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6 _exptl_crystal_grow.pdbx_details ;1ul 2mM DNA, 1ul 4mM lambda-[Ru(TAP)2(dppz-(Me)2]Cl2, 6ul 10% 2-methyl-2,4-pentanediol, 40mM sodium cacodylate, 12mM spermine tetra-HCl, 80mM potassium chloride, 20mM barium chloride, VAPOR DIFFUSION, SITTING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2012-03-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Dual crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I02' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I02 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9795 # _reflns.entry_id 4E95 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 34.53 _reflns.d_resolution_high 1.94 _reflns.number_obs 3216 _reflns.number_all 3219 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.94 _reflns_shell.d_res_low 1.99 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4E95 _refine.ls_number_reflns_obs 3055 _refine.ls_number_reflns_all 3055 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 33.55 _refine.ls_d_res_high 1.94 _refine.ls_percent_reflns_obs 100.00 _refine.ls_R_factor_obs 0.18603 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18331 _refine.ls_R_factor_R_free 0.24635 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.4 _refine.ls_number_reflns_R_free 139 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.959 _refine.correlation_coeff_Fo_to_Fc_free 0.908 _refine.B_iso_mean 33.236 _refine.aniso_B[1][1] 0.33 _refine.aniso_B[2][2] 0.33 _refine.aniso_B[3][3] -0.66 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.143 _refine.pdbx_overall_ESU_R_Free 0.150 _refine.overall_SU_ML 0.083 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.865 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 202 _refine_hist.pdbx_number_atoms_ligand 54 _refine_hist.number_atoms_solvent 38 _refine_hist.number_atoms_total 294 _refine_hist.d_res_high 1.94 _refine_hist.d_res_low 33.55 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.022 0.013 ? 292 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.002 0.020 ? 129 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 3.707 1.751 ? 460 ? 'X-RAY DIFFRACTION' r_angle_other_deg 1.712 3.000 ? 298 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_chiral_restr 0.088 0.200 ? 30 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.029 0.020 ? 176 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.003 0.020 ? 74 ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.940 _refine_ls_shell.d_res_low 1.990 _refine_ls_shell.number_reflns_R_work 190 _refine_ls_shell.R_factor_R_work 0.281 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.271 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 4 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 4E95 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4E95 _struct.title 'Lambda-[Ru(TAP)2(dppz-(Me)2)]2+ bound to CCGGATCCGG' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4E95 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Intercalation, Photoreactive, Lambda-[Ru(TAP)2(dppz-(Me)2]2+, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4E95 _struct_ref.pdbx_db_accession 4E95 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code CCGGATCCGG _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4E95 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 10 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 4E95 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 10 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2120 ? 1 MORE -24 ? 1 'SSA (A^2)' 4410 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_553 y,x,-z-2 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -69.0600000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 3 N7 ? ? ? 1_555 B BA . BA ? ? A DG 3 A BA 101 1_555 ? ? ? ? ? ? ? 3.091 ? ? metalc2 metalc ? ? A DG 4 O6 ? ? ? 1_555 B BA . BA ? ? A DG 4 A BA 101 1_555 ? ? ? ? ? ? ? 2.881 ? ? metalc3 metalc ? ? B BA . BA ? ? ? 1_555 D HOH . O ? ? A BA 101 A HOH 201 1_555 ? ? ? ? ? ? ? 2.962 ? ? metalc4 metalc ? ? B BA . BA ? ? ? 1_555 D HOH . O ? ? A BA 101 A HOH 202 1_555 ? ? ? ? ? ? ? 3.004 ? ? metalc5 metalc ? ? B BA . BA ? ? ? 1_555 D HOH . O ? ? A BA 101 A HOH 204 1_555 ? ? ? ? ? ? ? 2.898 ? ? metalc6 metalc ? ? B BA . BA ? ? ? 1_555 D HOH . O ? ? A BA 101 A HOH 208 1_555 ? ? ? ? ? ? ? 3.069 ? ? metalc7 metalc ? ? B BA . BA ? ? ? 1_555 D HOH . O ? ? A BA 101 A HOH 215 1_555 ? ? ? ? ? ? ? 3.137 ? ? hydrog1 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 9 N1 ? ? A DC 2 A DG 9 7_553 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 9 O6 ? ? A DC 2 A DG 9 7_553 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 9 N2 ? ? A DC 2 A DG 9 7_553 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 3 A DC 8 7_553 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 3 A DC 8 7_553 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 3 A DC 8 7_553 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DC 7 N3 ? ? A DG 4 A DC 7 7_553 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DC 7 O2 ? ? A DG 4 A DC 7 7_553 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DC 7 N4 ? ? A DG 4 A DC 7 7_553 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A DT 6 N3 ? ? A DA 5 A DT 6 7_553 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A DT 6 O4 ? ? A DA 5 A DT 6 7_553 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 6 N3 ? ? ? 1_555 A DA 5 N1 ? ? A DT 6 A DA 5 7_553 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 6 O4 ? ? ? 1_555 A DA 5 N6 ? ? A DT 6 A DA 5 7_553 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 7 N3 ? ? ? 1_555 A DG 4 N1 ? ? A DC 7 A DG 4 7_553 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 7 N4 ? ? ? 1_555 A DG 4 O6 ? ? A DC 7 A DG 4 7_553 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 O2 ? ? ? 1_555 A DG 4 N2 ? ? A DC 7 A DG 4 7_553 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 8 A DG 3 7_553 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 8 A DG 3 7_553 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 8 A DG 3 7_553 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DC 2 N3 ? ? A DG 9 A DC 2 7_553 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DC 2 O2 ? ? A DG 9 A DC 2 7_553 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 O6 ? ? ? 1_555 A DC 2 N4 ? ? A DG 9 A DC 2 7_553 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 3 ? A DG 3 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O6 ? A DG 4 ? A DG 4 ? 1_555 74.7 ? 2 N7 ? A DG 3 ? A DG 3 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? D HOH . ? A HOH 201 ? 1_555 74.0 ? 3 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? D HOH . ? A HOH 201 ? 1_555 69.7 ? 4 N7 ? A DG 3 ? A DG 3 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? D HOH . ? A HOH 202 ? 1_555 73.4 ? 5 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? D HOH . ? A HOH 202 ? 1_555 139.0 ? 6 O ? D HOH . ? A HOH 201 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? D HOH . ? A HOH 202 ? 1_555 77.2 ? 7 N7 ? A DG 3 ? A DG 3 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? D HOH . ? A HOH 204 ? 1_555 141.8 ? 8 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? D HOH . ? A HOH 204 ? 1_555 141.2 ? 9 O ? D HOH . ? A HOH 201 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? D HOH . ? A HOH 204 ? 1_555 103.0 ? 10 O ? D HOH . ? A HOH 202 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? D HOH . ? A HOH 204 ? 1_555 68.9 ? 11 N7 ? A DG 3 ? A DG 3 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? D HOH . ? A HOH 208 ? 1_555 78.6 ? 12 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? D HOH . ? A HOH 208 ? 1_555 130.3 ? 13 O ? D HOH . ? A HOH 201 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? D HOH . ? A HOH 208 ? 1_555 139.3 ? 14 O ? D HOH . ? A HOH 202 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? D HOH . ? A HOH 208 ? 1_555 66.5 ? 15 O ? D HOH . ? A HOH 204 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? D HOH . ? A HOH 208 ? 1_555 80.8 ? 16 N7 ? A DG 3 ? A DG 3 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? D HOH . ? A HOH 215 ? 1_555 139.8 ? 17 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? D HOH . ? A HOH 215 ? 1_555 73.3 ? 18 O ? D HOH . ? A HOH 201 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? D HOH . ? A HOH 215 ? 1_555 72.6 ? 19 O ? D HOH . ? A HOH 202 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? D HOH . ? A HOH 215 ? 1_555 119.1 ? 20 O ? D HOH . ? A HOH 204 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? D HOH . ? A HOH 215 ? 1_555 68.3 ? 21 O ? D HOH . ? A HOH 208 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? D HOH . ? A HOH 215 ? 1_555 141.4 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A BA 101 ? 7 'BINDING SITE FOR RESIDUE BA A 101' AC2 Software A RML 102 ? 10 'BINDING SITE FOR RESIDUE RML A 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 DG A 3 ? DG A 3 . ? 1_555 ? 2 AC1 7 DG A 4 ? DG A 4 . ? 1_555 ? 3 AC1 7 HOH D . ? HOH A 201 . ? 1_555 ? 4 AC1 7 HOH D . ? HOH A 202 . ? 1_555 ? 5 AC1 7 HOH D . ? HOH A 204 . ? 1_555 ? 6 AC1 7 HOH D . ? HOH A 208 . ? 1_555 ? 7 AC1 7 HOH D . ? HOH A 217 . ? 7_553 ? 8 AC2 10 DC A 1 ? DC A 1 . ? 1_555 ? 9 AC2 10 DC A 2 ? DC A 2 . ? 1_555 ? 10 AC2 10 DG A 3 ? DG A 3 . ? 1_555 ? 11 AC2 10 DG A 3 ? DG A 3 . ? 4_545 ? 12 AC2 10 DG A 4 ? DG A 4 . ? 4_545 ? 13 AC2 10 DC A 7 ? DC A 7 . ? 6_543 ? 14 AC2 10 DC A 8 ? DC A 8 . ? 6_543 ? 15 AC2 10 DG A 9 ? DG A 9 . ? 7_553 ? 16 AC2 10 DG A 10 ? DG A 10 . ? 7_553 ? 17 AC2 10 HOH D . ? HOH A 238 . ? 1_555 ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 N3 A DC 1 ? ? 1_555 O6 A DG 10 ? ? 7_553 1.98 2 1 N4 A DC 1 ? ? 1_555 O6 A DG 10 ? ? 7_553 2.15 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 DC _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 P _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 DC _pdbx_validate_rmsd_bond.auth_seq_id_2 2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.532 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.075 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O3'" A DC 1 ? ? P A DC 2 ? ? OP2 A DC 2 ? ? 118.71 110.50 8.21 1.10 Y 2 1 "O5'" A DC 2 ? ? P A DC 2 ? ? OP1 A DC 2 ? ? 120.87 110.70 10.17 1.20 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BA BA BA N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 DT OP3 O N N 109 DT P P N N 110 DT OP1 O N N 111 DT OP2 O N N 112 DT "O5'" O N N 113 DT "C5'" C N N 114 DT "C4'" C N R 115 DT "O4'" O N N 116 DT "C3'" C N S 117 DT "O3'" O N N 118 DT "C2'" C N N 119 DT "C1'" C N R 120 DT N1 N N N 121 DT C2 C N N 122 DT O2 O N N 123 DT N3 N N N 124 DT C4 C N N 125 DT O4 O N N 126 DT C5 C N N 127 DT C7 C N N 128 DT C6 C N N 129 DT HOP3 H N N 130 DT HOP2 H N N 131 DT "H5'" H N N 132 DT "H5''" H N N 133 DT "H4'" H N N 134 DT "H3'" H N N 135 DT "HO3'" H N N 136 DT "H2'" H N N 137 DT "H2''" H N N 138 DT "H1'" H N N 139 DT H3 H N N 140 DT H71 H N N 141 DT H72 H N N 142 DT H73 H N N 143 DT H6 H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 RML C53 C N N 148 RML C17 C Y N 149 RML C18 C Y N 150 RML C52 C N N 151 RML C14 C Y N 152 RML C16 C Y N 153 RML C15 C Y N 154 RML N3 N Y N 155 RML C13 C Y N 156 RML N4 N Y N 157 RML C7 C Y N 158 RML C6 C Y N 159 RML C5 C Y N 160 RML C4 C Y N 161 RML C3 C Y N 162 RML C2 C Y N 163 RML C8 C Y N 164 RML C10 C Y N 165 RML C1 C Y N 166 RML N2 N Y N 167 RML N1 N Y N 168 RML C12 C Y N 169 RML C11 C Y N 170 RML C9 C Y N 171 RML RU RU N N 172 RML N8 N Y N 173 RML C28 C Y N 174 RML C27 C Y N 175 RML N7 N Y N 176 RML C26 C Y N 177 RML C25 C Y N 178 RML C24 C Y N 179 RML C23 C Y N 180 RML C22 C Y N 181 RML N6 N Y N 182 RML C19 C Y N 183 RML N5 N Y N 184 RML C20 C Y N 185 RML C21 C Y N 186 RML N12 N Y N 187 RML C38 C Y N 188 RML C37 C Y N 189 RML N11 N Y N 190 RML C36 C Y N 191 RML C29 C Y N 192 RML N9 N Y N 193 RML C30 C Y N 194 RML C31 C Y N 195 RML C35 C Y N 196 RML C34 C Y N 197 RML C33 C Y N 198 RML C32 C Y N 199 RML N10 N Y N 200 RML H1 H N N 201 RML H2 H N N 202 RML H3 H N N 203 RML H4 H N N 204 RML H5 H N N 205 RML H6 H N N 206 RML H7 H N N 207 RML H8 H N N 208 RML H9 H N N 209 RML H10 H N N 210 RML H11 H N N 211 RML H12 H N N 212 RML H13 H N N 213 RML H14 H N N 214 RML H15 H N N 215 RML H16 H N N 216 RML H17 H N N 217 RML H18 H N N 218 RML H19 H N N 219 RML H20 H N N 220 RML H21 H N N 221 RML H22 H N N 222 RML H23 H N N 223 RML H24 H N N 224 RML H25 H N N 225 RML H26 H N N 226 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 RML C23 C24 doub Y N 152 RML C23 C22 sing Y N 153 RML C24 C25 sing Y N 154 RML N6 C22 doub Y N 155 RML N6 C21 sing Y N 156 RML C22 C19 sing Y N 157 RML C25 N7 doub Y N 158 RML C25 C26 sing Y N 159 RML N7 C27 sing Y N 160 RML C21 C20 doub Y N 161 RML C19 C26 sing Y N 162 RML C19 N5 doub Y N 163 RML C26 N8 doub Y N 164 RML C27 C28 doub Y N 165 RML C20 N5 sing Y N 166 RML N5 RU sing N N 167 RML N8 C28 sing Y N 168 RML N8 RU sing N N 169 RML C38 C37 doub Y N 170 RML C38 N12 sing Y N 171 RML C37 N11 sing Y N 172 RML C12 N1 doub Y N 173 RML C12 C11 sing Y N 174 RML N12 RU sing N N 175 RML N12 C36 doub Y N 176 RML RU N1 sing N N 177 RML RU N2 sing N N 178 RML RU N9 sing N N 179 RML N1 C10 sing Y N 180 RML C11 C9 doub Y N 181 RML N11 C35 doub Y N 182 RML C36 C35 sing Y N 183 RML C36 C29 sing Y N 184 RML C9 C8 sing Y N 185 RML C10 C8 doub Y N 186 RML C10 C1 sing Y N 187 RML C35 C34 sing Y N 188 RML N2 C2 doub Y N 189 RML N2 C1 sing Y N 190 RML C2 C3 sing Y N 191 RML C8 C7 sing Y N 192 RML C1 C5 doub Y N 193 RML N9 C29 doub Y N 194 RML N9 C30 sing Y N 195 RML C29 C32 sing Y N 196 RML C34 C33 doub Y N 197 RML C3 C4 doub Y N 198 RML C7 N4 doub Y N 199 RML C7 C6 sing Y N 200 RML C30 C31 doub Y N 201 RML C5 C4 sing Y N 202 RML C5 C6 sing Y N 203 RML N4 C13 sing Y N 204 RML C6 N3 doub Y N 205 RML C32 C33 sing Y N 206 RML C32 N10 doub Y N 207 RML C31 N10 sing Y N 208 RML C13 C14 doub Y N 209 RML C13 C15 sing Y N 210 RML N3 C15 sing Y N 211 RML C14 C18 sing Y N 212 RML C15 C16 doub Y N 213 RML C18 C52 sing N N 214 RML C18 C17 doub Y N 215 RML C16 C17 sing Y N 216 RML C17 C53 sing N N 217 RML C53 H1 sing N N 218 RML C53 H2 sing N N 219 RML C53 H3 sing N N 220 RML C52 H4 sing N N 221 RML C52 H5 sing N N 222 RML C52 H6 sing N N 223 RML C14 H7 sing N N 224 RML C16 H8 sing N N 225 RML C4 H9 sing N N 226 RML C3 H10 sing N N 227 RML C2 H11 sing N N 228 RML C12 H12 sing N N 229 RML C11 H13 sing N N 230 RML C9 H14 sing N N 231 RML C28 H15 sing N N 232 RML C27 H16 sing N N 233 RML C24 H17 sing N N 234 RML C23 H18 sing N N 235 RML C20 H19 sing N N 236 RML C21 H20 sing N N 237 RML C38 H21 sing N N 238 RML C37 H22 sing N N 239 RML C30 H23 sing N N 240 RML C31 H24 sing N N 241 RML C34 H25 sing N N 242 RML C33 H26 sing N N 243 # _ndb_struct_conf_na.entry_id 4E95 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 2 1_555 A DG 9 7_553 0.214 -0.045 0.056 -6.242 4.163 3.031 1 A_DC2:DG9_A A 2 ? A 9 ? 19 1 1 A DG 3 1_555 A DC 8 7_553 -0.398 -0.149 0.164 23.337 -5.180 1.536 2 A_DG3:DC8_A A 3 ? A 8 ? 19 1 1 A DG 4 1_555 A DC 7 7_553 -0.376 -0.064 -0.072 -10.683 -0.195 1.660 3 A_DG4:DC7_A A 4 ? A 7 ? 19 1 1 A DA 5 1_555 A DT 6 7_553 0.010 -0.149 0.309 -4.101 -8.512 -0.424 4 A_DA5:DT6_A A 5 ? A 6 ? 20 1 1 A DT 6 1_555 A DA 5 7_553 -0.010 -0.149 0.309 4.101 -8.512 -0.424 5 A_DT6:DA5_A A 6 ? A 5 ? 20 1 1 A DC 7 1_555 A DG 4 7_553 0.376 -0.064 -0.072 10.683 -0.195 1.660 6 A_DC7:DG4_A A 7 ? A 4 ? 19 1 1 A DC 8 1_555 A DG 3 7_553 0.398 -0.149 0.164 -23.337 -5.180 1.536 7 A_DC8:DG3_A A 8 ? A 3 ? 19 1 1 A DG 9 1_555 A DC 2 7_553 -0.214 -0.045 0.056 6.242 4.163 3.031 8 A_DG9:DC2_A A 9 ? A 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 2 1_555 A DG 9 7_553 A DG 3 1_555 A DC 8 7_553 -0.212 1.726 2.764 0.719 5.204 20.222 2.737 0.865 3.096 14.508 -2.005 20.886 1 AA_DC2DG3:DC8DG9_AA A 2 ? A 9 ? A 3 ? A 8 ? 1 A DG 3 1_555 A DC 8 7_553 A DG 4 1_555 A DC 7 7_553 0.066 0.885 5.205 -2.837 50.314 13.478 -5.431 -0.438 2.239 75.875 4.278 52.051 2 AA_DG3DG4:DC7DC8_AA A 3 ? A 8 ? A 4 ? A 7 ? 1 A DG 4 1_555 A DC 7 7_553 A DA 5 1_555 A DT 6 7_553 -1.136 0.333 3.243 -9.654 10.405 35.298 -0.888 0.447 3.391 16.366 15.185 37.961 3 AA_DG4DA5:DT6DC7_AA A 4 ? A 7 ? A 5 ? A 6 ? 1 A DA 5 1_555 A DT 6 7_553 A DT 6 1_555 A DA 5 7_553 0.000 -0.752 3.124 0.000 5.275 27.077 -2.779 0.000 2.927 11.131 0.000 27.577 4 AA_DA5DT6:DA5DT6_AA A 5 ? A 6 ? A 6 ? A 5 ? 1 A DT 6 1_555 A DA 5 7_553 A DC 7 1_555 A DG 4 7_553 1.136 0.333 3.243 9.654 10.405 35.298 -0.888 -0.447 3.391 16.366 -15.185 37.961 5 AA_DT6DC7:DG4DA5_AA A 6 ? A 5 ? A 7 ? A 4 ? 1 A DC 7 1_555 A DG 4 7_553 A DC 8 1_555 A DG 3 7_553 -0.066 0.885 5.205 2.837 50.314 13.478 -5.431 0.438 2.239 75.875 -4.278 52.051 6 AA_DC7DC8:DG3DG4_AA A 7 ? A 4 ? A 8 ? A 3 ? 1 A DC 8 1_555 A DG 3 7_553 A DG 9 1_555 A DC 2 7_553 0.212 1.726 2.764 -0.719 5.204 20.222 2.737 -0.865 3.096 14.508 2.005 20.886 7 AA_DC8DG9:DC2DG3_AA A 8 ? A 3 ? A 9 ? A 2 ? # _atom_sites.entry_id 4E95 _atom_sites.fract_transf_matrix[1][1] 0.021079 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021079 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.028960 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BA C N O P RU # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DC A 1 1 ? -0.937 -6.997 -21.946 0.70 56.35 ? 1 DC A "O5'" 1 ATOM 2 C "C5'" . DC A 1 1 ? -1.136 -8.227 -21.233 0.70 54.03 ? 1 DC A "C5'" 1 ATOM 3 C "C4'" . DC A 1 1 ? -0.975 -9.372 -22.202 0.70 50.42 ? 1 DC A "C4'" 1 ATOM 4 O "O4'" . DC A 1 1 ? -1.060 -10.636 -21.500 0.70 53.53 ? 1 DC A "O4'" 1 ATOM 5 C "C3'" . DC A 1 1 ? -2.105 -9.403 -23.224 0.70 53.70 ? 1 DC A "C3'" 1 ATOM 6 O "O3'" . DC A 1 1 ? -1.833 -10.193 -24.371 0.70 47.64 ? 1 DC A "O3'" 1 ATOM 7 C "C2'" . DC A 1 1 ? -3.153 -10.216 -22.511 0.70 50.63 ? 1 DC A "C2'" 1 ATOM 8 C "C1'" . DC A 1 1 ? -2.277 -11.274 -21.868 0.70 46.72 ? 1 DC A "C1'" 1 ATOM 9 N N1 . DC A 1 1 ? -2.875 -11.849 -20.675 0.70 44.55 ? 1 DC A N1 1 ATOM 10 C C2 . DC A 1 1 ? -2.581 -13.172 -20.364 0.70 38.83 ? 1 DC A C2 1 ATOM 11 O O2 . DC A 1 1 ? -1.762 -13.777 -21.061 0.70 31.85 ? 1 DC A O2 1 ATOM 12 N N3 . DC A 1 1 ? -3.168 -13.741 -19.287 0.70 44.42 ? 1 DC A N3 1 ATOM 13 C C4 . DC A 1 1 ? -4.005 -13.024 -18.527 0.70 49.15 ? 1 DC A C4 1 ATOM 14 N N4 . DC A 1 1 ? -4.554 -13.615 -17.462 0.70 58.08 ? 1 DC A N4 1 ATOM 15 C C5 . DC A 1 1 ? -4.340 -11.680 -18.840 0.70 43.57 ? 1 DC A C5 1 ATOM 16 C C6 . DC A 1 1 ? -3.762 -11.138 -19.914 0.70 44.37 ? 1 DC A C6 1 ATOM 17 P P . DC A 1 2 ? -1.171 -9.505 -25.569 0.70 52.56 ? 2 DC A P 1 ATOM 18 O OP1 . DC A 1 2 ? 0.201 -9.914 -25.191 0.70 42.10 ? 2 DC A OP1 1 ATOM 19 O OP2 . DC A 1 2 ? -1.482 -8.085 -25.833 0.70 42.38 ? 2 DC A OP2 1 ATOM 20 O "O5'" . DC A 1 2 ? -1.936 -10.218 -26.780 1.00 52.28 ? 2 DC A "O5'" 1 ATOM 21 C "C5'" . DC A 1 2 ? -1.212 -10.384 -27.971 1.00 40.49 ? 2 DC A "C5'" 1 ATOM 22 C "C4'" . DC A 1 2 ? -1.508 -11.683 -28.672 1.00 33.24 ? 2 DC A "C4'" 1 ATOM 23 O "O4'" . DC A 1 2 ? -1.961 -12.746 -27.823 1.00 29.25 ? 2 DC A "O4'" 1 ATOM 24 C "C3'" . DC A 1 2 ? -2.565 -11.543 -29.740 1.00 32.59 ? 2 DC A "C3'" 1 ATOM 25 O "O3'" . DC A 1 2 ? -1.872 -11.088 -30.904 1.00 36.07 ? 2 DC A "O3'" 1 ATOM 26 C "C2'" . DC A 1 2 ? -3.022 -12.974 -29.933 1.00 30.57 ? 2 DC A "C2'" 1 ATOM 27 C "C1'" . DC A 1 2 ? -2.801 -13.616 -28.561 1.00 30.19 ? 2 DC A "C1'" 1 ATOM 28 N N1 . DC A 1 2 ? -3.995 -13.836 -27.755 1.00 29.87 ? 2 DC A N1 1 ATOM 29 C C2 . DC A 1 2 ? -4.192 -15.093 -27.185 1.00 25.40 ? 2 DC A C2 1 ATOM 30 O O2 . DC A 1 2 ? -3.335 -15.965 -27.353 1.00 25.09 ? 2 DC A O2 1 ATOM 31 N N3 . DC A 1 2 ? -5.250 -15.288 -26.373 1.00 24.28 ? 2 DC A N3 1 ATOM 32 C C4 . DC A 1 2 ? -6.117 -14.301 -26.159 1.00 25.63 ? 2 DC A C4 1 ATOM 33 N N4 . DC A 1 2 ? -7.159 -14.556 -25.380 1.00 27.14 ? 2 DC A N4 1 ATOM 34 C C5 . DC A 1 2 ? -5.967 -13.021 -26.763 1.00 26.02 ? 2 DC A C5 1 ATOM 35 C C6 . DC A 1 2 ? -4.891 -12.827 -27.531 1.00 28.88 ? 2 DC A C6 1 ATOM 36 P P . DG A 1 3 ? -2.679 -10.682 -32.178 1.00 28.92 ? 3 DG A P 1 ATOM 37 O OP1 . DG A 1 3 ? -1.753 -9.713 -32.744 1.00 39.05 ? 3 DG A OP1 1 ATOM 38 O OP2 . DG A 1 3 ? -4.064 -10.339 -31.893 1.00 30.22 ? 3 DG A OP2 1 ATOM 39 O "O5'" . DG A 1 3 ? -2.672 -12.031 -33.014 1.00 25.84 ? 3 DG A "O5'" 1 ATOM 40 C "C5'" . DG A 1 3 ? -1.462 -12.746 -33.321 1.00 29.44 ? 3 DG A "C5'" 1 ATOM 41 C "C4'" . DG A 1 3 ? -1.767 -14.162 -33.753 1.00 34.34 ? 3 DG A "C4'" 1 ATOM 42 O "O4'" . DG A 1 3 ? -2.180 -14.943 -32.605 1.00 36.31 ? 3 DG A "O4'" 1 ATOM 43 C "C3'" . DG A 1 3 ? -2.880 -14.344 -34.787 1.00 36.00 ? 3 DG A "C3'" 1 ATOM 44 O "O3'" . DG A 1 3 ? -2.328 -14.422 -36.112 1.00 33.47 ? 3 DG A "O3'" 1 ATOM 45 C "C2'" . DG A 1 3 ? -3.460 -15.704 -34.441 1.00 37.25 ? 3 DG A "C2'" 1 ATOM 46 C "C1'" . DG A 1 3 ? -3.216 -15.835 -32.944 1.00 31.13 ? 3 DG A "C1'" 1 ATOM 47 N N9 . DG A 1 3 ? -4.349 -15.499 -32.103 1.00 29.76 ? 3 DG A N9 1 ATOM 48 C C8 . DG A 1 3 ? -5.097 -14.354 -32.147 1.00 26.37 ? 3 DG A C8 1 ATOM 49 N N7 . DG A 1 3 ? -6.036 -14.326 -31.245 1.00 23.15 ? 3 DG A N7 1 ATOM 50 C C5 . DG A 1 3 ? -5.841 -15.479 -30.506 1.00 24.45 ? 3 DG A C5 1 ATOM 51 C C6 . DG A 1 3 ? -6.563 -15.990 -29.402 1.00 22.80 ? 3 DG A C6 1 ATOM 52 O O6 . DG A 1 3 ? -7.522 -15.486 -28.808 1.00 28.74 ? 3 DG A O6 1 ATOM 53 N N1 . DG A 1 3 ? -6.071 -17.219 -28.998 1.00 26.48 ? 3 DG A N1 1 ATOM 54 C C2 . DG A 1 3 ? -5.017 -17.871 -29.566 1.00 24.57 ? 3 DG A C2 1 ATOM 55 N N2 . DG A 1 3 ? -4.716 -19.065 -29.038 1.00 26.85 ? 3 DG A N2 1 ATOM 56 N N3 . DG A 1 3 ? -4.345 -17.417 -30.613 1.00 28.41 ? 3 DG A N3 1 ATOM 57 C C4 . DG A 1 3 ? -4.816 -16.226 -31.031 1.00 26.93 ? 3 DG A C4 1 ATOM 58 P P . DG A 1 4 ? -2.922 -13.555 -37.267 1.00 32.22 ? 4 DG A P 1 ATOM 59 O OP1 . DG A 1 4 ? -1.957 -13.641 -38.436 1.00 34.86 ? 4 DG A OP1 1 ATOM 60 O OP2 . DG A 1 4 ? -3.422 -12.264 -36.842 1.00 35.72 ? 4 DG A OP2 1 ATOM 61 O "O5'" . DG A 1 4 ? -4.182 -14.395 -37.715 1.00 35.24 ? 4 DG A "O5'" 1 ATOM 62 C "C5'" . DG A 1 4 ? -4.005 -15.774 -38.066 1.00 36.56 ? 4 DG A "C5'" 1 ATOM 63 C "C4'" . DG A 1 4 ? -5.330 -16.436 -38.344 1.00 37.38 ? 4 DG A "C4'" 1 ATOM 64 O "O4'" . DG A 1 4 ? -6.102 -16.582 -37.126 1.00 29.92 ? 4 DG A "O4'" 1 ATOM 65 C "C3'" . DG A 1 4 ? -6.226 -15.645 -39.286 1.00 35.12 ? 4 DG A "C3'" 1 ATOM 66 O "O3'" . DG A 1 4 ? -6.983 -16.616 -39.996 1.00 37.10 ? 4 DG A "O3'" 1 ATOM 67 C "C2'" . DG A 1 4 ? -7.109 -14.872 -38.323 1.00 33.31 ? 4 DG A "C2'" 1 ATOM 68 C "C1'" . DG A 1 4 ? -7.343 -15.915 -37.255 1.00 30.22 ? 4 DG A "C1'" 1 ATOM 69 N N9 . DG A 1 4 ? -7.727 -15.375 -35.955 1.00 27.34 ? 4 DG A N9 1 ATOM 70 C C8 . DG A 1 4 ? -7.271 -14.205 -35.416 1.00 23.89 ? 4 DG A C8 1 ATOM 71 N N7 . DG A 1 4 ? -7.844 -13.909 -34.290 1.00 23.27 ? 4 DG A N7 1 ATOM 72 C C5 . DG A 1 4 ? -8.618 -15.012 -33.991 1.00 24.75 ? 4 DG A C5 1 ATOM 73 C C6 . DG A 1 4 ? -9.448 -15.286 -32.865 1.00 22.60 ? 4 DG A C6 1 ATOM 74 O O6 . DG A 1 4 ? -9.606 -14.630 -31.819 1.00 25.57 ? 4 DG A O6 1 ATOM 75 N N1 . DG A 1 4 ? -10.091 -16.496 -33.004 1.00 26.22 ? 4 DG A N1 1 ATOM 76 C C2 . DG A 1 4 ? -9.989 -17.316 -34.082 1.00 23.51 ? 4 DG A C2 1 ATOM 77 N N2 . DG A 1 4 ? -10.643 -18.465 -33.992 1.00 25.93 ? 4 DG A N2 1 ATOM 78 N N3 . DG A 1 4 ? -9.197 -17.097 -35.106 1.00 29.71 ? 4 DG A N3 1 ATOM 79 C C4 . DG A 1 4 ? -8.600 -15.907 -35.030 1.00 24.49 ? 4 DG A C4 1 ATOM 80 P P . DA A 1 5 ? -7.928 -16.352 -41.250 1.00 38.57 ? 5 DA A P 1 ATOM 81 O OP1 . DA A 1 5 ? -7.012 -16.912 -42.273 1.00 45.48 ? 5 DA A OP1 1 ATOM 82 O OP2 . DA A 1 5 ? -8.442 -14.944 -41.284 1.00 45.57 ? 5 DA A OP2 1 ATOM 83 O "O5'" . DA A 1 5 ? -9.211 -17.241 -41.141 1.00 37.44 ? 5 DA A "O5'" 1 ATOM 84 C "C5'" . DA A 1 5 ? -9.140 -18.626 -41.027 1.00 38.90 ? 5 DA A "C5'" 1 ATOM 85 C "C4'" . DA A 1 5 ? -10.516 -19.071 -40.623 1.00 40.90 ? 5 DA A "C4'" 1 ATOM 86 O "O4'" . DA A 1 5 ? -10.745 -18.741 -39.236 1.00 37.57 ? 5 DA A "O4'" 1 ATOM 87 C "C3'" . DA A 1 5 ? -11.643 -18.421 -41.436 1.00 42.63 ? 5 DA A "C3'" 1 ATOM 88 O "O3'" . DA A 1 5 ? -12.503 -19.446 -41.883 1.00 46.02 ? 5 DA A "O3'" 1 ATOM 89 C "C2'" . DA A 1 5 ? -12.387 -17.539 -40.451 1.00 39.05 ? 5 DA A "C2'" 1 ATOM 90 C "C1'" . DA A 1 5 ? -11.950 -18.028 -39.084 1.00 38.23 ? 5 DA A "C1'" 1 ATOM 91 N N9 . DA A 1 5 ? -11.671 -16.908 -38.221 1.00 35.54 ? 5 DA A N9 1 ATOM 92 C C8 . DA A 1 5 ? -10.765 -15.890 -38.355 1.00 30.42 ? 5 DA A C8 1 ATOM 93 N N7 . DA A 1 5 ? -10.791 -15.033 -37.373 1.00 32.43 ? 5 DA A N7 1 ATOM 94 C C5 . DA A 1 5 ? -11.786 -15.516 -36.537 1.00 29.62 ? 5 DA A C5 1 ATOM 95 C C6 . DA A 1 5 ? -12.298 -15.070 -35.306 1.00 27.62 ? 5 DA A C6 1 ATOM 96 N N6 . DA A 1 5 ? -11.868 -13.991 -34.659 1.00 30.64 ? 5 DA A N6 1 ATOM 97 N N1 . DA A 1 5 ? -13.280 -15.794 -34.746 1.00 30.06 ? 5 DA A N1 1 ATOM 98 C C2 . DA A 1 5 ? -13.694 -16.902 -35.359 1.00 29.15 ? 5 DA A C2 1 ATOM 99 N N3 . DA A 1 5 ? -13.273 -17.440 -36.487 1.00 31.65 ? 5 DA A N3 1 ATOM 100 C C4 . DA A 1 5 ? -12.323 -16.678 -37.044 1.00 34.64 ? 5 DA A C4 1 ATOM 101 P P . DT A 1 6 ? -13.827 -19.088 -42.731 1.00 52.16 ? 6 DT A P 1 ATOM 102 O OP1 . DT A 1 6 ? -14.255 -20.471 -43.082 1.00 61.62 ? 6 DT A OP1 1 ATOM 103 O OP2 . DT A 1 6 ? -13.514 -18.040 -43.753 1.00 50.52 ? 6 DT A OP2 1 ATOM 104 O "O5'" . DT A 1 6 ? -14.954 -18.580 -41.752 1.00 45.89 ? 6 DT A "O5'" 1 ATOM 105 C "C5'" . DT A 1 6 ? -15.684 -19.539 -40.996 1.00 45.83 ? 6 DT A "C5'" 1 ATOM 106 C "C4'" . DT A 1 6 ? -16.662 -18.748 -40.181 1.00 45.87 ? 6 DT A "C4'" 1 ATOM 107 O "O4'" . DT A 1 6 ? -15.874 -17.888 -39.348 1.00 42.35 ? 6 DT A "O4'" 1 ATOM 108 C "C3'" . DT A 1 6 ? -17.496 -17.807 -41.052 1.00 46.25 ? 6 DT A "C3'" 1 ATOM 109 O "O3'" . DT A 1 6 ? -18.796 -18.350 -41.342 1.00 49.61 ? 6 DT A "O3'" 1 ATOM 110 C "C2'" . DT A 1 6 ? -17.535 -16.511 -40.260 1.00 41.48 ? 6 DT A "C2'" 1 ATOM 111 C "C1'" . DT A 1 6 ? -16.676 -16.799 -39.032 1.00 43.31 ? 6 DT A "C1'" 1 ATOM 112 N N1 . DT A 1 6 ? -15.806 -15.701 -38.618 1.00 40.46 ? 6 DT A N1 1 ATOM 113 C C2 . DT A 1 6 ? -16.081 -15.227 -37.369 1.00 35.64 ? 6 DT A C2 1 ATOM 114 O O2 . DT A 1 6 ? -16.932 -15.718 -36.651 1.00 35.38 ? 6 DT A O2 1 ATOM 115 N N3 . DT A 1 6 ? -15.310 -14.171 -36.978 1.00 37.42 ? 6 DT A N3 1 ATOM 116 C C4 . DT A 1 6 ? -14.311 -13.561 -37.699 1.00 31.98 ? 6 DT A C4 1 ATOM 117 O O4 . DT A 1 6 ? -13.683 -12.658 -37.204 1.00 35.51 ? 6 DT A O4 1 ATOM 118 C C5 . DT A 1 6 ? -14.040 -14.134 -38.990 1.00 34.68 ? 6 DT A C5 1 ATOM 119 C C7 . DT A 1 6 ? -12.967 -13.528 -39.834 1.00 33.55 ? 6 DT A C7 1 ATOM 120 C C6 . DT A 1 6 ? -14.802 -15.156 -39.392 1.00 34.04 ? 6 DT A C6 1 ATOM 121 P P . DC A 1 7 ? -19.635 -17.702 -42.547 1.00 45.29 ? 7 DC A P 1 ATOM 122 O OP1 . DC A 1 7 ? -20.704 -18.725 -42.692 1.00 56.50 ? 7 DC A OP1 1 ATOM 123 O OP2 . DC A 1 7 ? -18.825 -17.252 -43.732 1.00 34.18 ? 7 DC A OP2 1 ATOM 124 O "O5'" . DC A 1 7 ? -20.330 -16.406 -41.946 1.00 38.65 ? 7 DC A "O5'" 1 ATOM 125 C "C5'" . DC A 1 7 ? -21.262 -16.508 -40.899 1.00 37.31 ? 7 DC A "C5'" 1 ATOM 126 C "C4'" . DC A 1 7 ? -21.513 -15.124 -40.368 1.00 37.62 ? 7 DC A "C4'" 1 ATOM 127 O "O4'" . DC A 1 7 ? -20.371 -14.679 -39.608 1.00 40.64 ? 7 DC A "O4'" 1 ATOM 128 C "C3'" . DC A 1 7 ? -21.688 -14.026 -41.396 1.00 36.31 ? 7 DC A "C3'" 1 ATOM 129 O "O3'" . DC A 1 7 ? -22.987 -14.107 -41.998 1.00 36.37 ? 7 DC A "O3'" 1 ATOM 130 C "C2'" . DC A 1 7 ? -21.455 -12.781 -40.538 1.00 36.75 ? 7 DC A "C2'" 1 ATOM 131 C "C1'" . DC A 1 7 ? -20.490 -13.269 -39.439 1.00 37.59 ? 7 DC A "C1'" 1 ATOM 132 N N1 . DC A 1 7 ? -19.137 -12.696 -39.532 1.00 32.74 ? 7 DC A N1 1 ATOM 133 C C2 . DC A 1 7 ? -18.577 -12.087 -38.418 1.00 30.45 ? 7 DC A C2 1 ATOM 134 O O2 . DC A 1 7 ? -19.236 -12.019 -37.377 1.00 32.87 ? 7 DC A O2 1 ATOM 135 N N3 . DC A 1 7 ? -17.329 -11.580 -38.503 1.00 34.11 ? 7 DC A N3 1 ATOM 136 C C4 . DC A 1 7 ? -16.649 -11.671 -39.644 1.00 30.31 ? 7 DC A C4 1 ATOM 137 N N4 . DC A 1 7 ? -15.433 -11.149 -39.683 1.00 30.15 ? 7 DC A N4 1 ATOM 138 C C5 . DC A 1 7 ? -17.182 -12.333 -40.787 1.00 28.99 ? 7 DC A C5 1 ATOM 139 C C6 . DC A 1 7 ? -18.406 -12.850 -40.676 1.00 32.50 ? 7 DC A C6 1 ATOM 140 P P . DC A 1 8 ? -23.213 -13.656 -43.491 1.00 32.35 ? 8 DC A P 1 ATOM 141 O OP1 . DC A 1 8 ? -24.603 -13.959 -43.811 1.00 38.49 ? 8 DC A OP1 1 ATOM 142 O OP2 . DC A 1 8 ? -22.135 -14.049 -44.398 1.00 36.91 ? 8 DC A OP2 1 ATOM 143 O "O5'" . DC A 1 8 ? -23.180 -12.071 -43.429 1.00 30.69 ? 8 DC A "O5'" 1 ATOM 144 C "C5'" . DC A 1 8 ? -24.234 -11.399 -42.756 1.00 28.41 ? 8 DC A "C5'" 1 ATOM 145 C "C4'" . DC A 1 8 ? -23.919 -9.932 -42.754 1.00 29.72 ? 8 DC A "C4'" 1 ATOM 146 O "O4'" . DC A 1 8 ? -22.672 -9.695 -42.106 1.00 29.22 ? 8 DC A "O4'" 1 ATOM 147 C "C3'" . DC A 1 8 ? -23.721 -9.323 -44.127 1.00 27.96 ? 8 DC A "C3'" 1 ATOM 148 O "O3'" . DC A 1 8 ? -24.985 -9.103 -44.766 1.00 36.55 ? 8 DC A "O3'" 1 ATOM 149 C "C2'" . DC A 1 8 ? -22.910 -8.081 -43.808 1.00 27.12 ? 8 DC A "C2'" 1 ATOM 150 C "C1'" . DC A 1 8 ? -22.163 -8.428 -42.526 1.00 26.91 ? 8 DC A "C1'" 1 ATOM 151 N N1 . DC A 1 8 ? -20.699 -8.567 -42.565 1.00 27.21 ? 8 DC A N1 1 ATOM 152 C C2 . DC A 1 8 ? -19.879 -7.671 -41.868 1.00 23.51 ? 8 DC A C2 1 ATOM 153 O O2 . DC A 1 8 ? -20.392 -6.669 -41.346 1.00 26.21 ? 8 DC A O2 1 ATOM 154 N N3 . DC A 1 8 ? -18.549 -7.924 -41.784 1.00 25.25 ? 8 DC A N3 1 ATOM 155 C C4 . DC A 1 8 ? -18.047 -9.014 -42.373 1.00 24.22 ? 8 DC A C4 1 ATOM 156 N N4 . DC A 1 8 ? -16.753 -9.224 -42.303 1.00 24.41 ? 8 DC A N4 1 ATOM 157 C C5 . DC A 1 8 ? -18.869 -9.944 -43.071 1.00 25.57 ? 8 DC A C5 1 ATOM 158 C C6 . DC A 1 8 ? -20.171 -9.686 -43.135 1.00 26.57 ? 8 DC A C6 1 ATOM 159 P P . DG A 1 9 ? -25.010 -8.846 -46.350 1.00 31.49 ? 9 DG A P 1 ATOM 160 O OP1 . DG A 1 9 ? -26.393 -9.037 -46.731 1.00 38.76 ? 9 DG A OP1 1 ATOM 161 O OP2 . DG A 1 9 ? -23.947 -9.626 -46.944 1.00 37.33 ? 9 DG A OP2 1 ATOM 162 O "O5'" . DG A 1 9 ? -24.696 -7.323 -46.664 1.00 31.25 ? 9 DG A "O5'" 1 ATOM 163 C "C5'" . DG A 1 9 ? -25.538 -6.240 -46.275 1.00 30.67 ? 9 DG A "C5'" 1 ATOM 164 C "C4'" . DG A 1 9 ? -24.751 -4.956 -46.318 1.00 32.02 ? 9 DG A "C4'" 1 ATOM 165 O "O4'" . DG A 1 9 ? -23.650 -5.044 -45.402 1.00 32.31 ? 9 DG A "O4'" 1 ATOM 166 C "C3'" . DG A 1 9 ? -24.128 -4.680 -47.680 1.00 40.73 ? 9 DG A "C3'" 1 ATOM 167 O "O3'" . DG A 1 9 ? -24.824 -3.674 -48.414 1.00 55.21 ? 9 DG A "O3'" 1 ATOM 168 C "C2'" . DG A 1 9 ? -22.790 -4.066 -47.361 1.00 41.61 ? 9 DG A "C2'" 1 ATOM 169 C "C1'" . DG A 1 9 ? -22.469 -4.497 -45.963 1.00 34.31 ? 9 DG A "C1'" 1 ATOM 170 N N9 . DG A 1 9 ? -21.381 -5.475 -45.897 1.00 28.97 ? 9 DG A N9 1 ATOM 171 C C8 . DG A 1 9 ? -21.218 -6.635 -46.603 1.00 27.76 ? 9 DG A C8 1 ATOM 172 N N7 . DG A 1 9 ? -20.083 -7.232 -46.352 1.00 27.22 ? 9 DG A N7 1 ATOM 173 C C5 . DG A 1 9 ? -19.463 -6.409 -45.429 1.00 27.47 ? 9 DG A C5 1 ATOM 174 C C6 . DG A 1 9 ? -18.173 -6.486 -44.843 1.00 26.87 ? 9 DG A C6 1 ATOM 175 O O6 . DG A 1 9 ? -17.337 -7.379 -44.936 1.00 29.77 ? 9 DG A O6 1 ATOM 176 N N1 . DG A 1 9 ? -17.941 -5.419 -43.992 1.00 23.82 ? 9 DG A N1 1 ATOM 177 C C2 . DG A 1 9 ? -18.778 -4.361 -43.807 1.00 26.77 ? 9 DG A C2 1 ATOM 178 N N2 . DG A 1 9 ? -18.347 -3.407 -42.987 1.00 29.27 ? 9 DG A N2 1 ATOM 179 N N3 . DG A 1 9 ? -19.969 -4.260 -44.357 1.00 28.09 ? 9 DG A N3 1 ATOM 180 C C4 . DG A 1 9 ? -20.224 -5.288 -45.191 1.00 29.79 ? 9 DG A C4 1 ATOM 181 P P . DG A 1 10 ? -24.365 -3.366 -49.935 1.00 60.32 ? 10 DG A P 1 ATOM 182 O OP1 . DG A 1 10 ? -25.547 -2.634 -50.449 1.00 87.18 ? 10 DG A OP1 1 ATOM 183 O OP2 . DG A 1 10 ? -23.919 -4.629 -50.625 1.00 58.03 ? 10 DG A OP2 1 ATOM 184 O "O5'" . DG A 1 10 ? -23.161 -2.336 -49.695 1.00 56.00 ? 10 DG A "O5'" 1 ATOM 185 C "C5'" . DG A 1 10 ? -22.218 -1.974 -50.729 1.00 53.77 ? 10 DG A "C5'" 1 ATOM 186 C "C4'" . DG A 1 10 ? -21.719 -0.570 -50.483 1.00 50.35 ? 10 DG A "C4'" 1 ATOM 187 O "O4'" . DG A 1 10 ? -20.742 -0.598 -49.415 1.00 53.68 ? 10 DG A "O4'" 1 ATOM 188 C "C3'" . DG A 1 10 ? -21.023 0.095 -51.669 1.00 51.57 ? 10 DG A "C3'" 1 ATOM 189 O "O3'" . DG A 1 10 ? -21.947 0.905 -52.414 1.00 53.31 ? 10 DG A "O3'" 1 ATOM 190 C "C2'" . DG A 1 10 ? -19.937 0.948 -51.023 1.00 48.54 ? 10 DG A "C2'" 1 ATOM 191 C "C1'" . DG A 1 10 ? -19.615 0.229 -49.716 1.00 45.21 ? 10 DG A "C1'" 1 ATOM 192 N N9 . DG A 1 10 ? -18.417 -0.619 -49.739 1.00 39.08 ? 10 DG A N9 1 ATOM 193 C C8 . DG A 1 10 ? -17.257 -0.415 -49.026 1.00 35.34 ? 10 DG A C8 1 ATOM 194 N N7 . DG A 1 10 ? -16.363 -1.340 -49.224 1.00 34.79 ? 10 DG A N7 1 ATOM 195 C C5 . DG A 1 10 ? -16.962 -2.205 -50.131 1.00 32.37 ? 10 DG A C5 1 ATOM 196 C C6 . DG A 1 10 ? -16.480 -3.396 -50.712 1.00 39.39 ? 10 DG A C6 1 ATOM 197 O O6 . DG A 1 10 ? -15.388 -3.944 -50.547 1.00 46.01 ? 10 DG A O6 1 ATOM 198 N N1 . DG A 1 10 ? -17.417 -3.962 -51.569 1.00 33.98 ? 10 DG A N1 1 ATOM 199 C C2 . DG A 1 10 ? -18.682 -3.474 -51.787 1.00 33.54 ? 10 DG A C2 1 ATOM 200 N N2 . DG A 1 10 ? -19.445 -4.159 -52.642 1.00 43.25 ? 10 DG A N2 1 ATOM 201 N N3 . DG A 1 10 ? -19.141 -2.361 -51.262 1.00 33.41 ? 10 DG A N3 1 ATOM 202 C C4 . DG A 1 10 ? -18.244 -1.792 -50.430 1.00 35.43 ? 10 DG A C4 1 HETATM 203 BA BA . BA B 2 . ? -8.157 -12.140 -31.773 1.00 27.02 ? 101 BA A BA 1 HETATM 204 C C53 . RML C 3 . ? -8.388 -17.659 -19.007 1.00 34.72 ? 102 RML A C53 1 HETATM 205 C C17 . RML C 3 . ? -7.035 -18.034 -19.640 1.00 30.34 ? 102 RML A C17 1 HETATM 206 C C18 . RML C 3 . ? -6.413 -19.236 -19.396 1.00 31.60 ? 102 RML A C18 1 HETATM 207 C C52 . RML C 3 . ? -7.033 -20.326 -18.517 1.00 37.67 ? 102 RML A C52 1 HETATM 208 C C14 . RML C 3 . ? -5.202 -19.509 -19.985 1.00 28.38 ? 102 RML A C14 1 HETATM 209 C C16 . RML C 3 . ? -6.391 -17.110 -20.492 1.00 32.90 ? 102 RML A C16 1 HETATM 210 C C15 . RML C 3 . ? -5.156 -17.392 -21.109 1.00 27.09 ? 102 RML A C15 1 HETATM 211 N N3 . RML C 3 . ? -4.611 -16.522 -21.928 1.00 25.71 ? 102 RML A N3 1 HETATM 212 C C13 . RML C 3 . ? -4.590 -18.632 -20.860 1.00 28.60 ? 102 RML A C13 1 HETATM 213 N N4 . RML C 3 . ? -3.448 -18.961 -21.443 1.00 28.85 ? 102 RML A N4 1 HETATM 214 C C7 . RML C 3 . ? -2.844 -18.034 -22.278 1.00 26.61 ? 102 RML A C7 1 HETATM 215 C C6 . RML C 3 . ? -3.454 -16.804 -22.542 1.00 24.63 ? 102 RML A C6 1 HETATM 216 C C5 . RML C 3 . ? -2.811 -15.842 -23.380 1.00 27.66 ? 102 RML A C5 1 HETATM 217 C C4 . RML C 3 . ? -3.408 -14.597 -23.598 1.00 30.83 ? 102 RML A C4 1 HETATM 218 C C3 . RML C 3 . ? -2.743 -13.712 -24.436 1.00 31.00 ? 102 RML A C3 1 HETATM 219 C C2 . RML C 3 . ? -1.482 -14.039 -25.001 1.00 30.79 ? 102 RML A C2 1 HETATM 220 C C8 . RML C 3 . ? -1.599 -18.301 -22.883 1.00 28.23 ? 102 RML A C8 1 HETATM 221 C C10 . RML C 3 . ? -0.954 -17.338 -23.751 1.00 24.17 ? 102 RML A C10 1 HETATM 222 C C1 . RML C 3 . ? -1.580 -16.119 -24.037 1.00 27.65 ? 102 RML A C1 1 HETATM 223 N N2 . RML C 3 . ? -0.843 -15.262 -24.894 1.00 30.30 ? 102 RML A N2 1 HETATM 224 N N1 . RML C 3 . ? 0.293 -17.450 -24.347 1.00 29.43 ? 102 RML A N1 1 HETATM 225 C C12 . RML C 3 . ? 0.799 -18.728 -24.157 1.00 25.28 ? 102 RML A C12 1 HETATM 226 C C11 . RML C 3 . ? 0.235 -19.681 -23.351 1.00 26.33 ? 102 RML A C11 1 HETATM 227 C C9 . RML C 3 . ? -0.981 -19.528 -22.680 1.00 26.56 ? 102 RML A C9 1 HETATM 228 RU RU . RML C 3 . ? 0.870 -15.879 -25.283 1.00 25.74 ? 102 RML A RU 1 HETATM 229 N N8 . RML C 3 . ? 2.633 -16.520 -25.607 1.00 26.91 ? 102 RML A N8 1 HETATM 230 C C28 . RML C 3 . ? 3.273 -17.332 -26.458 1.00 25.51 ? 102 RML A C28 1 HETATM 231 C C27 . RML C 3 . ? 4.644 -17.676 -26.402 1.00 28.56 ? 102 RML A C27 1 HETATM 232 N N7 . RML C 3 . ? 5.453 -17.343 -25.393 1.00 25.83 ? 102 RML A N7 1 HETATM 233 C C26 . RML C 3 . ? 3.498 -16.274 -24.546 1.00 26.44 ? 102 RML A C26 1 HETATM 234 C C25 . RML C 3 . ? 4.823 -16.615 -24.460 1.00 26.06 ? 102 RML A C25 1 HETATM 235 C C24 . RML C 3 . ? 5.600 -16.199 -23.423 1.00 24.23 ? 102 RML A C24 1 HETATM 236 C C23 . RML C 3 . ? 5.061 -15.476 -22.369 1.00 27.61 ? 102 RML A C23 1 HETATM 237 C C22 . RML C 3 . ? 3.708 -15.121 -22.375 1.00 27.07 ? 102 RML A C22 1 HETATM 238 N N6 . RML C 3 . ? 3.223 -14.375 -21.314 1.00 24.26 ? 102 RML A N6 1 HETATM 239 C C19 . RML C 3 . ? 2.931 -15.502 -23.486 1.00 23.59 ? 102 RML A C19 1 HETATM 240 N N5 . RML C 3 . ? 1.569 -15.254 -23.671 1.00 29.49 ? 102 RML A N5 1 HETATM 241 C C20 . RML C 3 . ? 1.165 -14.495 -22.607 1.00 24.13 ? 102 RML A C20 1 HETATM 242 C C21 . RML C 3 . ? 1.930 -14.118 -21.491 1.00 27.95 ? 102 RML A C21 1 HETATM 243 N N12 . RML C 3 . ? 1.382 -14.314 -26.256 1.00 29.87 ? 102 RML A N12 1 HETATM 244 C C38 . RML C 3 . ? 1.930 -13.136 -25.916 1.00 31.55 ? 102 RML A C38 1 HETATM 245 C C37 . RML C 3 . ? 2.218 -12.115 -26.822 1.00 30.25 ? 102 RML A C37 1 HETATM 246 N N11 . RML C 3 . ? 1.963 -12.232 -28.112 1.00 28.84 ? 102 RML A N11 1 HETATM 247 C C36 . RML C 3 . ? 1.077 -14.350 -27.584 1.00 27.84 ? 102 RML A C36 1 HETATM 248 C C29 . RML C 3 . ? 0.504 -15.579 -27.990 1.00 29.67 ? 102 RML A C29 1 HETATM 249 N N9 . RML C 3 . ? 0.230 -16.478 -26.929 1.00 31.28 ? 102 RML A N9 1 HETATM 250 C C30 . RML C 3 . ? -0.334 -17.648 -27.471 1.00 29.84 ? 102 RML A C30 1 HETATM 251 C C31 . RML C 3 . ? -0.636 -17.761 -28.852 1.00 29.16 ? 102 RML A C31 1 HETATM 252 C C35 . RML C 3 . ? 1.389 -13.383 -28.537 1.00 32.92 ? 102 RML A C35 1 HETATM 253 C C34 . RML C 3 . ? 1.088 -13.575 -29.915 1.00 28.13 ? 102 RML A C34 1 HETATM 254 C C33 . RML C 3 . ? 0.452 -14.731 -30.286 1.00 32.10 ? 102 RML A C33 1 HETATM 255 C C32 . RML C 3 . ? 0.183 -15.719 -29.329 1.00 28.31 ? 102 RML A C32 1 HETATM 256 N N10 . RML C 3 . ? -0.407 -16.799 -29.778 1.00 31.56 ? 102 RML A N10 1 HETATM 257 O O . HOH D 4 . ? -8.641 -13.099 -29.013 1.00 30.86 ? 201 HOH A O 1 HETATM 258 O O . HOH D 4 . ? -5.946 -10.834 -30.215 1.00 28.55 ? 202 HOH A O 1 HETATM 259 O O . HOH D 4 . ? -3.934 -19.847 -32.195 1.00 37.57 ? 203 HOH A O 1 HETATM 260 O O . HOH D 4 . ? -8.582 -9.282 -31.556 1.00 29.92 ? 204 HOH A O 1 HETATM 261 O O . HOH D 4 . ? -6.177 -9.596 -27.800 1.00 47.22 ? 205 HOH A O 1 HETATM 262 O O . HOH D 4 . ? -9.157 -12.523 -25.189 1.00 54.33 ? 206 HOH A O 1 HETATM 263 O O . HOH D 4 . ? -11.280 -7.732 -30.959 1.00 40.08 ? 207 HOH A O 1 HETATM 264 O O . HOH D 4 . ? -5.834 -11.164 -33.525 1.00 25.82 ? 208 HOH A O 1 HETATM 265 O O . HOH D 4 . ? 4.485 -14.486 -28.188 1.00 27.00 ? 209 HOH A O 1 HETATM 266 O O . HOH D 4 . ? -17.674 2.111 -47.806 1.00 32.69 ? 210 HOH A O 1 HETATM 267 O O . HOH D 4 . ? -11.015 -13.877 -26.924 1.00 34.74 ? 211 HOH A O 1 HETATM 268 O O . HOH D 4 . ? -9.698 -16.711 -22.781 1.00 42.68 ? 212 HOH A O 1 HETATM 269 O O . HOH D 4 . ? -2.169 -20.942 -29.888 1.00 32.77 ? 213 HOH A O 1 HETATM 270 O O . HOH D 4 . ? 3.616 -16.743 -29.670 1.00 38.15 ? 214 HOH A O 1 HETATM 271 O O . HOH D 4 . ? -11.134 -11.464 -31.052 1.00 25.78 ? 215 HOH A O 1 HETATM 272 O O . HOH D 4 . ? -12.522 -9.794 -32.365 1.00 25.62 ? 216 HOH A O 1 HETATM 273 O O . HOH D 4 . ? -11.302 -9.541 -34.782 1.00 30.23 ? 217 HOH A O 1 HETATM 274 O O . HOH D 4 . ? -11.062 -10.707 -28.645 1.00 39.58 ? 218 HOH A O 1 HETATM 275 O O . HOH D 4 . ? -11.175 -15.946 -24.860 1.00 38.55 ? 219 HOH A O 1 HETATM 276 O O . HOH D 4 . ? -6.006 -13.693 -21.799 1.00 48.54 ? 220 HOH A O 1 HETATM 277 O O . HOH D 4 . ? -20.647 -1.276 -42.214 0.50 24.16 ? 221 HOH A O 1 HETATM 278 O O . HOH D 4 . ? -5.903 -11.155 -36.051 0.50 30.30 ? 222 HOH A O 1 HETATM 279 O O . HOH D 4 . ? -22.746 -8.744 -48.980 0.50 28.49 ? 223 HOH A O 1 HETATM 280 O O . HOH D 4 . ? -14.931 -14.891 -42.784 0.50 27.76 ? 224 HOH A O 1 HETATM 281 O O . HOH D 4 . ? -8.602 -7.791 -33.895 0.50 22.49 ? 225 HOH A O 1 HETATM 282 O O . HOH D 4 . ? -2.444 -18.512 -36.226 0.50 32.86 ? 226 HOH A O 1 HETATM 283 O O . HOH D 4 . ? -19.650 -9.875 -47.153 0.50 32.49 ? 227 HOH A O 1 HETATM 284 O O . HOH D 4 . ? -5.741 -8.532 -35.709 0.50 37.63 ? 228 HOH A O 1 HETATM 285 O O . HOH D 4 . ? -28.903 -7.643 -46.661 0.50 29.45 ? 229 HOH A O 1 HETATM 286 O O . HOH D 4 . ? 2.317 -16.017 -32.935 0.50 31.06 ? 230 HOH A O 1 HETATM 287 O O . HOH D 4 . ? -27.907 -11.126 -45.360 0.50 32.79 ? 231 HOH A O 1 HETATM 288 O O . HOH D 4 . ? -7.217 -12.477 -40.807 0.50 35.44 ? 232 HOH A O 1 HETATM 289 O O . HOH D 4 . ? -10.836 -12.775 -22.180 0.50 32.82 ? 233 HOH A O 1 HETATM 290 O O . HOH D 4 . ? -25.197 3.170 -50.639 0.50 32.49 ? 234 HOH A O 1 HETATM 291 O O . HOH D 4 . ? -9.509 -14.327 -21.365 0.50 34.34 ? 235 HOH A O 1 HETATM 292 O O . HOH D 4 . ? -26.697 -7.632 -49.932 1.00 54.64 ? 236 HOH A O 1 HETATM 293 O O . HOH D 4 . ? -14.785 -19.726 -37.049 1.00 53.69 ? 237 HOH A O 1 HETATM 294 O O . HOH D 4 . ? 2.281 -10.002 -29.644 1.00 52.97 ? 238 HOH A O 1 #