data_4R0P # _entry.id 4R0P # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4R0P pdb_00004r0p 10.2210/pdb4r0p/pdb RCSB RCSB086752 ? ? WWPDB D_1000086752 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-12-17 2 'Structure model' 1 1 2015-01-14 3 'Structure model' 1 2 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.entry_id 4R0P _pdbx_database_status.status_code REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-08-01 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sievers, S.' 1 'Eisenberg, D.S.' 2 'Sawaya, M.R.' 3 # _citation.id primary _citation.title 'Structure-based design of functional amyloid materials.' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 136 _citation.page_first 18044 _citation.page_last 18051 _citation.year 2014 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25474758 _citation.pdbx_database_id_DOI 10.1021/ja509648u # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, D.' 1 ? primary 'Jones, E.M.' 2 ? primary 'Sawaya, M.R.' 3 ? primary 'Furukawa, H.' 4 ? primary 'Luo, F.' 5 ? primary 'Ivanova, M.' 6 ? primary 'Sievers, S.A.' 7 ? primary 'Wang, W.' 8 ? primary 'Yaghi, O.M.' 9 ? primary 'Liu, C.' 10 ? primary 'Eisenberg, D.S.' 11 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Lysozyme C' 720.814 1 3.2.1.17 ? 'UNP RESIDUES 74-79' ? 2 water nat water 18.015 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name '1,4-beta-N-acetylmuramidase C' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code IFQINS _entity_poly.pdbx_seq_one_letter_code_can IFQINS _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 PHE n 1 3 GLN n 1 4 ILE n 1 5 ASN n 1 6 SER n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details 'IFQINS hexapeptide (residues 56-61) from human lysozyme, synthesized' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 1 1 ILE ILE A . n A 1 2 PHE 2 2 2 PHE PHE A . n A 1 3 GLN 3 3 3 GLN GLN A . n A 1 4 ILE 4 4 4 ILE ILE A . n A 1 5 ASN 5 5 5 ASN ASN A . n A 1 6 SER 6 6 6 SER SER A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 101 1 HOH HOH A . B 2 HOH 2 102 2 HOH HOH A . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER 1.3.2 'Wed Feb 15 11:59:26 2006' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.14 'Dec. 10, 2013' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? # _cell.length_a 19.607 _cell.length_b 4.839 _cell.length_c 43.220 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4R0P _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 4R0P _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 4R0P _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity 0.300 _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 1.42 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 13.51 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details 'reservoir contained 0.1M Bis-Tris pH 6.5, 3.0M Sodium Chloride, vapor diffusion, hanging drop, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2006-05-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9466 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID13' _diffrn_source.pdbx_wavelength_list 0.9466 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID13 # _reflns.entry_id 4R0P _reflns.d_resolution_high 1.500 _reflns.d_resolution_low 90.000 _reflns.number_obs 753 _reflns.pdbx_Rmerge_I_obs 0.181 _reflns.pdbx_netI_over_sigmaI 5.800 _reflns.pdbx_chi_squared 1.055 _reflns.pdbx_redundancy 13.100 _reflns.percent_possible_obs 93.800 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.0 _reflns.number_all 753 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 14.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.500 1.620 ? ? ? 0 0.422 ? ? 1.078 8.800 ? ? ? 128 ? ? ? ? 81.000 ? ? 1 1 1.620 1.780 ? ? ? 0 0.378 ? ? 1.014 9.700 ? ? ? 129 ? ? ? ? 94.200 ? ? 2 1 1.780 2.040 ? ? ? 0 0.242 ? ? 1.054 16.400 ? ? ? 146 ? ? ? ? 96.700 ? ? 3 1 2.040 2.560 ? ? ? 0 0.196 ? ? 1.092 15.700 ? ? ? 163 ? ? ? ? 96.400 ? ? 4 1 2.560 90.000 ? ? ? 0 0.125 ? ? 1.028 13.800 ? ? ? 187 ? ? ? ? 99.500 ? ? 5 1 # _refine.entry_id 4R0P _refine.ls_d_res_high 1.5200 _refine.ls_d_res_low 21.6100 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 92.8900 _refine.ls_number_reflns_obs 732 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_all 0.1623 _refine.ls_R_factor_obs 0.1623 _refine.ls_R_factor_R_work 0.1578 _refine.ls_wR_factor_R_work 0.1458 _refine.ls_R_factor_R_free 0.2008 _refine.ls_wR_factor_R_free 0.1884 _refine.ls_percent_reflns_R_free 10.5000 _refine.ls_number_reflns_R_free 77 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 4.9240 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.4100 _refine.aniso_B[2][2] 0.2600 _refine.aniso_B[3][3] -0.6700 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9690 _refine.correlation_coeff_Fo_to_Fc_free 0.9660 _refine.overall_SU_R_Cruickshank_DPI 0.0948 _refine.overall_SU_R_free 0.0969 _refine.pdbx_overall_ESU_R 0.0950 _refine.pdbx_overall_ESU_R_Free 0.0970 _refine.overall_SU_ML 0.0540 _refine.overall_SU_B 1.5660 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8701 _refine.B_iso_max 20.850 _refine.B_iso_min 2.000 _refine.pdbx_overall_phase_error ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 51 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 2 _refine_hist.number_atoms_total 53 _refine_hist.d_res_high 1.5200 _refine_hist.d_res_low 21.6100 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 57 0.013 0.023 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 78 1.479 1.944 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 7 5.547 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 3 39.503 26.667 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 11 7.721 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 10 0.129 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 43 0.004 0.020 ? ? 'X-RAY DIFFRACTION' r_nbd_refined 10 0.208 0.200 ? ? 'X-RAY DIFFRACTION' r_nbtor_refined 37 0.324 0.200 ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined 1 0.007 0.200 ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined 8 0.100 0.200 ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined 1 0.010 0.200 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 36 1.435 2.000 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 56 2.474 3.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 25 2.129 2.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 21 2.005 3.000 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.5240 _refine_ls_shell.d_res_low 1.5640 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 75.4400 _refine_ls_shell.number_reflns_R_work 36 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2150 _refine_ls_shell.R_factor_R_free 0.4680 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 7 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 43 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 4R0P _struct.title 'Ifqins, an amyloid forming segment from human lysozyme spanning residues 56-61' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4R0P _struct_keywords.text 'amyloid-like protofibril, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LYSC_HUMAN _struct_ref.pdbx_db_accession P61626 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code IFQINS _struct_ref.pdbx_align_begin 74 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4R0P _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P61626 _struct_ref_seq.db_align_beg 74 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 79 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_535 x,y-2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -9.6780000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 1_545 x,y-1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -4.8390000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4.8390000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5 'crystal symmetry operation' 1_575 x,y+2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 9.6780000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 6 'crystal symmetry operation' 3_454 -x-1,y+1/2,-z-1/2 -1.0000000000 0.0000000000 0.0000000000 -19.6070000000 0.0000000000 1.0000000000 0.0000000000 2.4195000000 0.0000000000 0.0000000000 -1.0000000000 -21.6100000000 7 'crystal symmetry operation' 3_434 -x-1,y-3/2,-z-1/2 -1.0000000000 0.0000000000 0.0000000000 -19.6070000000 0.0000000000 1.0000000000 0.0000000000 -7.2585000000 0.0000000000 0.0000000000 -1.0000000000 -21.6100000000 8 'crystal symmetry operation' 3_444 -x-1,y-1/2,-z-1/2 -1.0000000000 0.0000000000 0.0000000000 -19.6070000000 0.0000000000 1.0000000000 0.0000000000 -2.4195000000 0.0000000000 0.0000000000 -1.0000000000 -21.6100000000 9 'crystal symmetry operation' 3_464 -x-1,y+3/2,-z-1/2 -1.0000000000 0.0000000000 0.0000000000 -19.6070000000 0.0000000000 1.0000000000 0.0000000000 7.2585000000 0.0000000000 0.0000000000 -1.0000000000 -21.6100000000 10 'crystal symmetry operation' 3_474 -x-1,y+5/2,-z-1/2 -1.0000000000 0.0000000000 0.0000000000 -19.6070000000 0.0000000000 1.0000000000 0.0000000000 12.0975000000 0.0000000000 0.0000000000 -1.0000000000 -21.6100000000 # _struct_biol.id 1 _struct_biol.details ;There are two choices of the biological unit (fibrils). The first choice is a pair of indefinitely long beta sheets constructed from chain A and unit cell translations along the b direction (the b direction corresponds to the fiber axis) (i.e. X,Y,Z; X,Y+1,Z; X,Y+2,Z; etc.) together with a symmetry related sheet formed from -X,1/2+Y,-1/2-Z and its unit cell translations along the b direction (i.e. -X,3/2+Y,-1/2-Z; -X,5/2+Y,-1/2-Z, etc.). The second choice of biological unit is a pair of beta sheets constructed from chain A and unit cell translations along the b direction (i.e. X,Y,Z; X,Y+1,Z; X,Y+2,Z; etc.) together with a symmetry related sheet formed from -1-X,1/2+Y,-1/2-Z and its unit cell translations along the b direction (i.e. -1-X,3/2+Y,-1/2-Z; -1-X,5/2+Y,-1/2-Z, etc.). REMARK 350 displays 5 strands from both sheets for the second choice. ; # _pdbx_phasing_MR.entry_id 4R0P _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.310 _pdbx_phasing_MR.d_res_low_rotation 21.610 _pdbx_phasing_MR.d_res_high_translation 2.310 _pdbx_phasing_MR.d_res_low_translation 21.610 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASN N N N N 1 ASN CA C N S 2 ASN C C N N 3 ASN O O N N 4 ASN CB C N N 5 ASN CG C N N 6 ASN OD1 O N N 7 ASN ND2 N N N 8 ASN OXT O N N 9 ASN H H N N 10 ASN H2 H N N 11 ASN HA H N N 12 ASN HB2 H N N 13 ASN HB3 H N N 14 ASN HD21 H N N 15 ASN HD22 H N N 16 ASN HXT H N N 17 GLN N N N N 18 GLN CA C N S 19 GLN C C N N 20 GLN O O N N 21 GLN CB C N N 22 GLN CG C N N 23 GLN CD C N N 24 GLN OE1 O N N 25 GLN NE2 N N N 26 GLN OXT O N N 27 GLN H H N N 28 GLN H2 H N N 29 GLN HA H N N 30 GLN HB2 H N N 31 GLN HB3 H N N 32 GLN HG2 H N N 33 GLN HG3 H N N 34 GLN HE21 H N N 35 GLN HE22 H N N 36 GLN HXT H N N 37 HOH O O N N 38 HOH H1 H N N 39 HOH H2 H N N 40 ILE N N N N 41 ILE CA C N S 42 ILE C C N N 43 ILE O O N N 44 ILE CB C N S 45 ILE CG1 C N N 46 ILE CG2 C N N 47 ILE CD1 C N N 48 ILE OXT O N N 49 ILE H H N N 50 ILE H2 H N N 51 ILE HA H N N 52 ILE HB H N N 53 ILE HG12 H N N 54 ILE HG13 H N N 55 ILE HG21 H N N 56 ILE HG22 H N N 57 ILE HG23 H N N 58 ILE HD11 H N N 59 ILE HD12 H N N 60 ILE HD13 H N N 61 ILE HXT H N N 62 PHE N N N N 63 PHE CA C N S 64 PHE C C N N 65 PHE O O N N 66 PHE CB C N N 67 PHE CG C Y N 68 PHE CD1 C Y N 69 PHE CD2 C Y N 70 PHE CE1 C Y N 71 PHE CE2 C Y N 72 PHE CZ C Y N 73 PHE OXT O N N 74 PHE H H N N 75 PHE H2 H N N 76 PHE HA H N N 77 PHE HB2 H N N 78 PHE HB3 H N N 79 PHE HD1 H N N 80 PHE HD2 H N N 81 PHE HE1 H N N 82 PHE HE2 H N N 83 PHE HZ H N N 84 PHE HXT H N N 85 SER N N N N 86 SER CA C N S 87 SER C C N N 88 SER O O N N 89 SER CB C N N 90 SER OG O N N 91 SER OXT O N N 92 SER H H N N 93 SER H2 H N N 94 SER HA H N N 95 SER HB2 H N N 96 SER HB3 H N N 97 SER HG H N N 98 SER HXT H N N 99 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASN N CA sing N N 1 ASN N H sing N N 2 ASN N H2 sing N N 3 ASN CA C sing N N 4 ASN CA CB sing N N 5 ASN CA HA sing N N 6 ASN C O doub N N 7 ASN C OXT sing N N 8 ASN CB CG sing N N 9 ASN CB HB2 sing N N 10 ASN CB HB3 sing N N 11 ASN CG OD1 doub N N 12 ASN CG ND2 sing N N 13 ASN ND2 HD21 sing N N 14 ASN ND2 HD22 sing N N 15 ASN OXT HXT sing N N 16 GLN N CA sing N N 17 GLN N H sing N N 18 GLN N H2 sing N N 19 GLN CA C sing N N 20 GLN CA CB sing N N 21 GLN CA HA sing N N 22 GLN C O doub N N 23 GLN C OXT sing N N 24 GLN CB CG sing N N 25 GLN CB HB2 sing N N 26 GLN CB HB3 sing N N 27 GLN CG CD sing N N 28 GLN CG HG2 sing N N 29 GLN CG HG3 sing N N 30 GLN CD OE1 doub N N 31 GLN CD NE2 sing N N 32 GLN NE2 HE21 sing N N 33 GLN NE2 HE22 sing N N 34 GLN OXT HXT sing N N 35 HOH O H1 sing N N 36 HOH O H2 sing N N 37 ILE N CA sing N N 38 ILE N H sing N N 39 ILE N H2 sing N N 40 ILE CA C sing N N 41 ILE CA CB sing N N 42 ILE CA HA sing N N 43 ILE C O doub N N 44 ILE C OXT sing N N 45 ILE CB CG1 sing N N 46 ILE CB CG2 sing N N 47 ILE CB HB sing N N 48 ILE CG1 CD1 sing N N 49 ILE CG1 HG12 sing N N 50 ILE CG1 HG13 sing N N 51 ILE CG2 HG21 sing N N 52 ILE CG2 HG22 sing N N 53 ILE CG2 HG23 sing N N 54 ILE CD1 HD11 sing N N 55 ILE CD1 HD12 sing N N 56 ILE CD1 HD13 sing N N 57 ILE OXT HXT sing N N 58 PHE N CA sing N N 59 PHE N H sing N N 60 PHE N H2 sing N N 61 PHE CA C sing N N 62 PHE CA CB sing N N 63 PHE CA HA sing N N 64 PHE C O doub N N 65 PHE C OXT sing N N 66 PHE CB CG sing N N 67 PHE CB HB2 sing N N 68 PHE CB HB3 sing N N 69 PHE CG CD1 doub Y N 70 PHE CG CD2 sing Y N 71 PHE CD1 CE1 sing Y N 72 PHE CD1 HD1 sing N N 73 PHE CD2 CE2 doub Y N 74 PHE CD2 HD2 sing N N 75 PHE CE1 CZ doub Y N 76 PHE CE1 HE1 sing N N 77 PHE CE2 CZ sing Y N 78 PHE CE2 HE2 sing N N 79 PHE CZ HZ sing N N 80 PHE OXT HXT sing N N 81 SER N CA sing N N 82 SER N H sing N N 83 SER N H2 sing N N 84 SER CA C sing N N 85 SER CA CB sing N N 86 SER CA HA sing N N 87 SER C O doub N N 88 SER C OXT sing N N 89 SER CB OG sing N N 90 SER CB HB2 sing N N 91 SER CB HB3 sing N N 92 SER OG HG sing N N 93 SER OXT HXT sing N N 94 # _atom_sites.entry_id 4R0P _atom_sites.fract_transf_matrix[1][1] 0.051002 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.206654 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023137 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 N N . ILE A 1 1 ? -5.744 0.857 0.784 1.00 7.25 ? 1 ILE A N 1 ATOM 2 C CA . ILE A 1 1 ? -4.756 0.956 -0.332 1.00 5.36 ? 1 ILE A CA 1 ATOM 3 C C . ILE A 1 1 ? -5.380 0.344 -1.595 1.00 4.27 ? 1 ILE A C 1 ATOM 4 O O . ILE A 1 1 ? -5.642 -0.858 -1.646 1.00 5.01 ? 1 ILE A O 1 ATOM 5 C CB . ILE A 1 1 ? -3.403 0.281 0.040 1.00 5.67 ? 1 ILE A CB 1 ATOM 6 C CG1 . ILE A 1 1 ? -2.803 0.941 1.292 1.00 6.34 ? 1 ILE A CG1 1 ATOM 7 C CG2 . ILE A 1 1 ? -2.420 0.346 -1.134 1.00 10.03 ? 1 ILE A CG2 1 ATOM 8 C CD1 . ILE A 1 1 ? -1.631 0.180 1.920 1.00 8.20 ? 1 ILE A CD1 1 ATOM 9 N N . PHE A 1 2 ? -5.619 1.196 -2.595 1.00 2.00 ? 2 PHE A N 1 ATOM 10 C CA . PHE A 1 2 ? -6.296 0.840 -3.849 1.00 2.00 ? 2 PHE A CA 1 ATOM 11 C C . PHE A 1 2 ? -5.432 1.424 -4.980 1.00 2.00 ? 2 PHE A C 1 ATOM 12 O O . PHE A 1 2 ? -5.287 2.647 -5.079 1.00 2.73 ? 2 PHE A O 1 ATOM 13 C CB . PHE A 1 2 ? -7.700 1.478 -3.826 1.00 3.28 ? 2 PHE A CB 1 ATOM 14 C CG . PHE A 1 2 ? -8.591 1.121 -4.999 1.00 4.82 ? 2 PHE A CG 1 ATOM 15 C CD1 . PHE A 1 2 ? -9.561 0.133 -4.872 1.00 5.04 ? 2 PHE A CD1 1 ATOM 16 C CD2 . PHE A 1 2 ? -8.503 1.816 -6.204 1.00 6.12 ? 2 PHE A CD2 1 ATOM 17 C CE1 . PHE A 1 2 ? -10.410 -0.184 -5.942 1.00 6.05 ? 2 PHE A CE1 1 ATOM 18 C CE2 . PHE A 1 2 ? -9.344 1.509 -7.278 1.00 6.34 ? 2 PHE A CE2 1 ATOM 19 C CZ . PHE A 1 2 ? -10.301 0.506 -7.146 1.00 4.98 ? 2 PHE A CZ 1 ATOM 20 N N . GLN A 1 3 ? -4.852 0.550 -5.812 1.00 2.00 ? 3 GLN A N 1 ATOM 21 C CA . GLN A 1 3 ? -3.870 0.955 -6.843 1.00 2.00 ? 3 GLN A CA 1 ATOM 22 C C . GLN A 1 3 ? -4.157 0.335 -8.215 1.00 2.00 ? 3 GLN A C 1 ATOM 23 O O . GLN A 1 3 ? -4.306 -0.888 -8.310 1.00 2.00 ? 3 GLN A O 1 ATOM 24 C CB . GLN A 1 3 ? -2.452 0.546 -6.396 1.00 2.00 ? 3 GLN A CB 1 ATOM 25 C CG . GLN A 1 3 ? -1.964 1.201 -5.102 1.00 2.17 ? 3 GLN A CG 1 ATOM 26 C CD . GLN A 1 3 ? -0.652 0.610 -4.594 1.00 4.22 ? 3 GLN A CD 1 ATOM 27 O OE1 . GLN A 1 3 ? -0.524 -0.604 -4.432 1.00 6.81 ? 3 GLN A OE1 1 ATOM 28 N NE2 . GLN A 1 3 ? 0.318 1.471 -4.321 1.00 4.49 ? 3 GLN A NE2 1 ATOM 29 N N . ILE A 1 4 ? -4.234 1.172 -9.260 1.00 2.00 ? 4 ILE A N 1 ATOM 30 C CA A ILE A 1 4 ? -4.489 0.696 -10.630 0.50 2.00 ? 4 ILE A CA 1 ATOM 31 C CA B ILE A 1 4 ? -4.512 0.712 -10.633 0.50 2.00 ? 4 ILE A CA 1 ATOM 32 C C . ILE A 1 4 ? -3.567 1.340 -11.677 1.00 2.18 ? 4 ILE A C 1 ATOM 33 O O . ILE A 1 4 ? -3.390 2.557 -11.705 1.00 2.00 ? 4 ILE A O 1 ATOM 34 C CB A ILE A 1 4 ? -5.976 0.910 -11.073 0.50 2.00 ? 4 ILE A CB 1 ATOM 35 C CB B ILE A 1 4 ? -5.982 1.048 -11.079 0.50 2.90 ? 4 ILE A CB 1 ATOM 36 C CG1 A ILE A 1 4 ? -6.946 0.114 -10.186 0.50 2.00 ? 4 ILE A CG1 1 ATOM 37 C CG1 B ILE A 1 4 ? -7.030 0.659 -10.016 0.50 5.28 ? 4 ILE A CG1 1 ATOM 38 C CG2 A ILE A 1 4 ? -6.170 0.526 -12.552 0.50 2.00 ? 4 ILE A CG2 1 ATOM 39 C CG2 B ILE A 1 4 ? -6.299 0.444 -12.463 0.50 3.41 ? 4 ILE A CG2 1 ATOM 40 C CD1 A ILE A 1 4 ? -8.416 0.279 -10.558 0.50 2.36 ? 4 ILE A CD1 1 ATOM 41 C CD1 B ILE A 1 4 ? -7.265 -0.835 -9.828 0.50 5.14 ? 4 ILE A CD1 1 ATOM 42 N N . ASN A 1 5 ? -2.974 0.497 -12.532 1.00 2.00 ? 5 ASN A N 1 ATOM 43 C CA . ASN A 1 5 ? -2.190 0.932 -13.703 1.00 2.00 ? 5 ASN A CA 1 ATOM 44 C C . ASN A 1 5 ? -2.976 0.433 -14.929 1.00 2.69 ? 5 ASN A C 1 ATOM 45 O O . ASN A 1 5 ? -3.227 -0.768 -15.058 1.00 3.74 ? 5 ASN A O 1 ATOM 46 C CB . ASN A 1 5 ? -0.771 0.334 -13.719 1.00 2.01 ? 5 ASN A CB 1 ATOM 47 C CG . ASN A 1 5 ? 0.173 0.986 -12.708 1.00 2.00 ? 5 ASN A CG 1 ATOM 48 O OD1 . ASN A 1 5 ? 0.230 2.210 -12.582 1.00 2.66 ? 5 ASN A OD1 1 ATOM 49 N ND2 . ASN A 1 5 ? 0.945 0.158 -12.002 1.00 2.00 ? 5 ASN A ND2 1 ATOM 50 N N . SER A 1 6 ? -3.373 1.349 -15.811 1.00 4.34 ? 6 SER A N 1 ATOM 51 C CA . SER A 1 6 ? -4.166 0.996 -16.999 1.00 7.95 ? 6 SER A CA 1 ATOM 52 C C . SER A 1 6 ? -3.763 1.763 -18.263 1.00 12.44 ? 6 SER A C 1 ATOM 53 O O . SER A 1 6 ? -2.904 2.645 -18.243 1.00 9.51 ? 6 SER A O 1 ATOM 54 C CB . SER A 1 6 ? -5.657 1.207 -16.724 1.00 8.90 ? 6 SER A CB 1 ATOM 55 O OG . SER A 1 6 ? -5.928 2.572 -16.455 1.00 16.75 ? 6 SER A OG 1 ATOM 56 O OXT . SER A 1 6 ? -4.298 1.522 -19.349 1.00 13.02 ? 6 SER A OXT 1 HETATM 57 O O . HOH B 2 . ? -8.955 -1.256 1.707 1.00 20.85 ? 101 HOH A O 1 HETATM 58 O O . HOH B 2 . ? -8.466 1.082 0.113 1.00 12.29 ? 102 HOH A O 1 #