data_5CH0 # _entry.id 5CH0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5CH0 pdb_00005ch0 10.2210/pdb5ch0/pdb WWPDB D_1000211609 ? ? # _pdbx_database_related.content_type unspecified _pdbx_database_related.db_id 5CJY _pdbx_database_related.db_name PDB _pdbx_database_related.details . # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5CH0 _pdbx_database_status.recvd_initial_deposition_date 2015-07-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Sheng, J.' _audit_author.pdbx_ordinal 1 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of an A-form DNA duplex containing 5-hydroxylmethylcytidine' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # _citation_author.citation_id primary _citation_author.name 'Sheng, J.' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5CH0 _cell.details ? _cell.formula_units_Z ? _cell.length_a 43.050 _cell.length_a_esd ? _cell.length_b 43.050 _cell.length_b_esd ? _cell.length_c 23.764 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CH0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-R(*G)-D(P*(UMS))-R(P*G)-D(P*T)-R(P*A)-D(P*(5HC))-R(P*AP*C)-3') ; 2535.603 1 ? ? ? ? 2 water nat water 18.015 37 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DG)(UMS)(DG)(DT)(DA)(5HC)(DA)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GUGTAXAC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 UMS n 1 3 DG n 1 4 DT n 1 5 DA n 1 6 5HC n 1 7 DA n 1 8 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 8 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5CH0 _struct_ref.pdbx_db_accession 5CH0 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5CH0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 8 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5CH0 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 8 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5HC 'DNA linking' n ;2'-deoxy-5-(hydroxymethyl)cytidine 5'-(dihydrogen phosphate) ; ? 'C10 H16 N3 O8 P' 337.223 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 UMS 'DNA linking' n "2'-METHYLSELENYL-2'-DEOXYURIDINE-5'-PHOSPHATE" ? 'C10 H15 N2 O8 P Se' 401.168 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5CH0 _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.10 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 46.33 _exptl_crystal.description Tetragonal _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '10% MPD, 40 mM Na cacodylate pH 7.0, 12 mM spermine tetra-HCl, 12mM KCl and 80 mM NaCl' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 99 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2011-09-05 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.987 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 8.2.2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.987 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 8.2.2 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5CH0 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.4 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 4738 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.5 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 21.4 _reflns.pdbx_Rmerge_I_obs 0.074 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 52.1 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.40 _reflns_shell.d_res_low 1.42 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 9.57 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 92.7 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.174 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 6.6 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 0.15 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] 0.15 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] -0.30 _refine.B_iso_max ? _refine.B_iso_mean 7.767 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.945 _refine.correlation_coeff_Fo_to_Fc_free 0.932 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5CH0 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.40 _refine.ls_d_res_low 30.44 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 4496 _refine.ls_number_reflns_R_free 215 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.58 _refine.ls_percent_reflns_R_free 4.6 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.19029 _refine.ls_R_factor_R_free 0.20107 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.18974 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1Z7I _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.063 _refine.pdbx_overall_ESU_R_Free 0.061 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 0.869 _refine.overall_SU_ML 0.036 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 164 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 37 _refine_hist.number_atoms_total 201 _refine_hist.d_res_high 1.40 _refine_hist.d_res_low 30.44 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.010 0.021 183 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.644 3.000 280 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.066 0.200 32 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.008 0.020 83 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 0.154 0.200 60 ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.271 0.200 109 ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? 0.077 0.200 12 ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? 0.180 0.200 22 ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? 0.079 0.200 14 ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 0.729 3.000 262 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? 1.200 4.500 280 ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.399 _refine_ls_shell.d_res_low 1.436 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 14 _refine_ls_shell.number_reflns_R_work 308 _refine_ls_shell.percent_reflns_obs 96.12 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.140 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.209 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5CH0 _struct.title 'Crystal structure of an A-form DNA duplex containing 5-hydroxylmethylcytidine' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5CH0 _struct_keywords.text 'A-form DNA duplex, 5hmC, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 1 "O3'" ? ? ? 1_555 A UMS 2 P ? ? A DG 1 A UMS 2 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale2 covale both ? A UMS 2 "O3'" ? ? ? 1_555 A DG 3 P ? ? A UMS 2 A DG 3 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale3 covale both ? A DA 5 "O3'" ? ? ? 1_555 A 5HC 6 P ? ? A DA 5 A 5HC 6 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale4 covale both ? A 5HC 6 "O3'" ? ? ? 1_555 A DA 7 P ? ? A 5HC 6 A DA 7 1_555 ? ? ? ? ? ? ? 1.597 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A UMS 2 N3 ? ? ? 1_555 A DA 7 N1 ? ? A UMS 2 A DA 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A UMS 2 O4 ? ? ? 1_555 A DA 7 N6 ? ? A UMS 2 A DA 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A 5HC 6 N3 ? ? A DG 3 A 5HC 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A 5HC 6 O2 ? ? A DG 3 A 5HC 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A 5HC 6 N4 ? ? A DG 3 A 5HC 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA 5 N1 ? ? A DT 4 A DA 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA 5 N6 ? ? A DT 4 A DA 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A DT 4 N3 ? ? A DA 5 A DT 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A DT 4 O4 ? ? A DA 5 A DT 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A 5HC 6 N3 ? ? ? 1_555 A DG 3 N1 ? ? A 5HC 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A 5HC 6 N4 ? ? ? 1_555 A DG 3 O6 ? ? A 5HC 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A 5HC 6 O2 ? ? ? 1_555 A DG 3 N2 ? ? A 5HC 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 7 N1 ? ? ? 1_555 A UMS 2 N3 ? ? A DA 7 A UMS 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 7 N6 ? ? ? 1_555 A UMS 2 O4 ? ? A DA 7 A UMS 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _atom_sites.entry_id 5CH0 _atom_sites.fract_transf_matrix[1][1] 0.023229 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023229 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.042080 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P SE # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DG A 1 1 ? 13.633 24.077 -5.463 1.00 7.50 ? 1 DG A "O5'" 1 ATOM 2 C "C5'" . DG A 1 1 ? 13.648 25.471 -5.215 1.00 6.70 ? 1 DG A "C5'" 1 ATOM 3 C "C4'" . DG A 1 1 ? 12.383 25.944 -4.513 1.00 5.35 ? 1 DG A "C4'" 1 ATOM 4 O "O4'" . DG A 1 1 ? 11.226 25.725 -5.357 1.00 4.89 ? 1 DG A "O4'" 1 ATOM 5 C "C3'" . DG A 1 1 ? 12.034 25.223 -3.220 1.00 4.81 ? 1 DG A "C3'" 1 ATOM 6 O "O3'" . DG A 1 1 ? 12.794 25.757 -2.142 1.00 5.84 ? 1 DG A "O3'" 1 ATOM 7 C "C2'" . DG A 1 1 ? 10.547 25.537 -3.107 1.00 5.41 ? 1 DG A "C2'" 1 ATOM 8 C "C1'" . DG A 1 1 ? 10.111 25.379 -4.560 1.00 4.96 ? 1 DG A "C1'" 1 ATOM 9 N N9 . DG A 1 1 ? 9.724 24.004 -4.864 1.00 4.94 ? 1 DG A N9 1 ATOM 10 C C8 . DG A 1 1 ? 10.494 23.048 -5.483 1.00 5.20 ? 1 DG A C8 1 ATOM 11 N N7 . DG A 1 1 ? 9.892 21.901 -5.612 1.00 5.36 ? 1 DG A N7 1 ATOM 12 C C5 . DG A 1 1 ? 8.646 22.109 -5.034 1.00 5.21 ? 1 DG A C5 1 ATOM 13 C C6 . DG A 1 1 ? 7.550 21.224 -4.879 1.00 4.96 ? 1 DG A C6 1 ATOM 14 O O6 . DG A 1 1 ? 7.466 20.041 -5.236 1.00 5.37 ? 1 DG A O6 1 ATOM 15 N N1 . DG A 1 1 ? 6.466 21.828 -4.242 1.00 4.87 ? 1 DG A N1 1 ATOM 16 C C2 . DG A 1 1 ? 6.436 23.135 -3.814 1.00 5.23 ? 1 DG A C2 1 ATOM 17 N N2 . DG A 1 1 ? 5.304 23.543 -3.223 1.00 6.03 ? 1 DG A N2 1 ATOM 18 N N3 . DG A 1 1 ? 7.455 23.975 -3.954 1.00 5.48 ? 1 DG A N3 1 ATOM 19 C C4 . DG A 1 1 ? 8.524 23.401 -4.566 1.00 5.23 ? 1 DG A C4 1 HETATM 20 P P . UMS A 1 2 ? 13.288 24.834 -0.935 1.00 5.83 ? 2 UMS A P 1 HETATM 21 O OP1 . UMS A 1 2 ? 14.148 25.686 -0.080 1.00 6.46 ? 2 UMS A OP1 1 HETATM 22 O OP2 . UMS A 1 2 ? 13.814 23.562 -1.469 1.00 6.75 ? 2 UMS A OP2 1 HETATM 23 O "O5'" . UMS A 1 2 ? 11.944 24.479 -0.150 1.00 5.51 ? 2 UMS A "O5'" 1 HETATM 24 C "C5'" . UMS A 1 2 ? 11.263 25.475 0.593 1.00 5.26 ? 2 UMS A "C5'" 1 HETATM 25 C "C4'" . UMS A 1 2 ? 9.907 24.980 1.048 1.00 5.46 ? 2 UMS A "C4'" 1 HETATM 26 O "O4'" . UMS A 1 2 ? 9.103 24.657 -0.111 1.00 4.84 ? 2 UMS A "O4'" 1 HETATM 27 C "C3'" . UMS A 1 2 ? 9.908 23.690 1.838 1.00 6.51 ? 2 UMS A "C3'" 1 HETATM 28 O "O3'" . UMS A 1 2 ? 10.358 23.936 3.148 1.00 7.53 ? 2 UMS A "O3'" 1 HETATM 29 C "C2'" . UMS A 1 2 ? 8.444 23.282 1.709 1.00 6.61 ? 2 UMS A "C2'" 1 HETATM 30 SE "SE2'" . UMS A 1 2 ? 7.248 24.378 2.825 0.90 10.25 ? 2 UMS A "SE2'" 1 HETATM 31 C "C1'" . UMS A 1 2 ? 8.240 23.581 0.218 1.00 5.44 ? 2 UMS A "C1'" 1 HETATM 32 C "CA'" . UMS A 1 2 ? 5.540 23.418 2.735 0.90 8.82 ? 2 UMS A "CA'" 1 HETATM 33 N N1 . UMS A 1 2 ? 8.564 22.385 -0.635 1.00 4.92 ? 2 UMS A N1 1 HETATM 34 C C2 . UMS A 1 2 ? 7.617 21.380 -0.732 1.00 5.55 ? 2 UMS A C2 1 HETATM 35 O O2 . UMS A 1 2 ? 6.531 21.411 -0.182 1.00 6.17 ? 2 UMS A O2 1 HETATM 36 N N3 . UMS A 1 2 ? 7.984 20.318 -1.517 1.00 4.89 ? 2 UMS A N3 1 HETATM 37 C C4 . UMS A 1 2 ? 9.183 20.138 -2.191 1.00 5.04 ? 2 UMS A C4 1 HETATM 38 O O4 . UMS A 1 2 ? 9.363 19.117 -2.856 1.00 5.62 ? 2 UMS A O4 1 HETATM 39 C C5 . UMS A 1 2 ? 10.128 21.218 -2.043 1.00 5.38 ? 2 UMS A C5 1 HETATM 40 C C6 . UMS A 1 2 ? 9.787 22.273 -1.285 1.00 5.46 ? 2 UMS A C6 1 ATOM 41 P P . DG A 1 3 ? 11.215 22.817 3.905 1.00 9.21 ? 3 DG A P 1 ATOM 42 O OP1 . DG A 1 3 ? 11.778 23.444 5.116 1.00 11.05 ? 3 DG A OP1 1 ATOM 43 O OP2 . DG A 1 3 ? 12.083 22.061 2.976 1.00 9.47 ? 3 DG A OP2 1 ATOM 44 O "O5'" . DG A 1 3 ? 9.988 21.992 4.440 1.00 12.37 ? 3 DG A "O5'" 1 ATOM 45 C "C5'" . DG A 1 3 ? 9.914 20.681 4.395 1.00 11.75 ? 3 DG A "C5'" 1 ATOM 46 C "C4'" . DG A 1 3 ? 8.460 20.472 4.705 1.00 10.01 ? 3 DG A "C4'" 1 ATOM 47 O "O4'" . DG A 1 3 ? 7.658 20.731 3.523 1.00 7.92 ? 3 DG A "O4'" 1 ATOM 48 C "C3'" . DG A 1 3 ? 8.325 19.024 5.057 1.00 8.65 ? 3 DG A "C3'" 1 ATOM 49 O "O3'" . DG A 1 3 ? 8.268 18.954 6.462 1.00 8.43 ? 3 DG A "O3'" 1 ATOM 50 C "C2'" . DG A 1 3 ? 7.050 18.636 4.330 1.00 7.44 ? 3 DG A "C2'" 1 ATOM 51 C "C1'" . DG A 1 3 ? 7.148 19.494 3.068 1.00 6.21 ? 3 DG A "C1'" 1 ATOM 52 N N9 . DG A 1 3 ? 8.021 18.920 2.034 1.00 5.73 ? 3 DG A N9 1 ATOM 53 C C8 . DG A 1 3 ? 9.253 19.351 1.591 1.00 5.96 ? 3 DG A C8 1 ATOM 54 N N7 . DG A 1 3 ? 9.770 18.606 0.655 1.00 5.42 ? 3 DG A N7 1 ATOM 55 C C5 . DG A 1 3 ? 8.818 17.614 0.458 1.00 5.79 ? 3 DG A C5 1 ATOM 56 C C6 . DG A 1 3 ? 8.806 16.512 -0.434 1.00 5.11 ? 3 DG A C6 1 ATOM 57 O O6 . DG A 1 3 ? 9.661 16.175 -1.260 1.00 6.02 ? 3 DG A O6 1 ATOM 58 N N1 . DG A 1 3 ? 7.645 15.749 -0.307 1.00 5.33 ? 3 DG A N1 1 ATOM 59 C C2 . DG A 1 3 ? 6.622 16.011 0.570 1.00 5.26 ? 3 DG A C2 1 ATOM 60 N N2 . DG A 1 3 ? 5.579 15.171 0.561 1.00 5.71 ? 3 DG A N2 1 ATOM 61 N N3 . DG A 1 3 ? 6.621 17.038 1.408 1.00 5.40 ? 3 DG A N3 1 ATOM 62 C C4 . DG A 1 3 ? 7.740 17.795 1.296 1.00 5.63 ? 3 DG A C4 1 ATOM 63 P P . DT A 1 4 ? 8.889 17.665 7.164 1.00 8.79 ? 4 DT A P 1 ATOM 64 O OP1 . DT A 1 4 ? 8.639 17.796 8.616 1.00 8.34 ? 4 DT A OP1 1 ATOM 65 O OP2 . DT A 1 4 ? 10.255 17.435 6.693 1.00 8.05 ? 4 DT A OP2 1 ATOM 66 O "O5'" . DT A 1 4 ? 8.017 16.471 6.575 1.00 7.73 ? 4 DT A "O5'" 1 ATOM 67 C "C5'" . DT A 1 4 ? 6.645 16.327 6.935 1.00 7.76 ? 4 DT A "C5'" 1 ATOM 68 C "C4'" . DT A 1 4 ? 6.071 15.119 6.224 1.00 6.60 ? 4 DT A "C4'" 1 ATOM 69 O "O4'" . DT A 1 4 ? 6.153 15.293 4.787 1.00 6.05 ? 4 DT A "O4'" 1 ATOM 70 C "C3'" . DT A 1 4 ? 6.833 13.832 6.480 1.00 7.11 ? 4 DT A "C3'" 1 ATOM 71 O "O3'" . DT A 1 4 ? 6.379 13.329 7.714 1.00 8.27 ? 4 DT A "O3'" 1 ATOM 72 C "C2'" . DT A 1 4 ? 6.401 12.986 5.291 1.00 6.09 ? 4 DT A "C2'" 1 ATOM 73 C "C1'" . DT A 1 4 ? 6.375 14.031 4.179 1.00 5.57 ? 4 DT A "C1'" 1 ATOM 74 N N1 . DT A 1 4 ? 7.623 14.068 3.342 1.00 5.28 ? 4 DT A N1 1 ATOM 75 C C2 . DT A 1 4 ? 7.770 13.115 2.347 1.00 4.61 ? 4 DT A C2 1 ATOM 76 O O2 . DT A 1 4 ? 6.945 12.243 2.125 1.00 4.82 ? 4 DT A O2 1 ATOM 77 N N3 . DT A 1 4 ? 8.931 13.216 1.621 1.00 4.39 ? 4 DT A N3 1 ATOM 78 C C4 . DT A 1 4 ? 9.939 14.151 1.798 1.00 4.43 ? 4 DT A C4 1 ATOM 79 O O4 . DT A 1 4 ? 10.936 14.155 1.086 1.00 5.19 ? 4 DT A O4 1 ATOM 80 C C5 . DT A 1 4 ? 9.730 15.123 2.853 1.00 4.87 ? 4 DT A C5 1 ATOM 81 C C7 . DT A 1 4 ? 10.761 16.182 3.133 1.00 5.03 ? 4 DT A C7 1 ATOM 82 C C6 . DT A 1 4 ? 8.596 15.030 3.569 1.00 5.25 ? 4 DT A C6 1 ATOM 83 P P . DA A 1 5 ? 7.218 12.267 8.546 1.00 9.54 ? 5 DA A P 1 ATOM 84 O OP1 . DA A 1 5 ? 6.628 12.223 9.898 1.00 10.90 ? 5 DA A OP1 1 ATOM 85 O OP2 . DA A 1 5 ? 8.665 12.508 8.373 1.00 11.41 ? 5 DA A OP2 1 ATOM 86 O "O5'" . DA A 1 5 ? 6.836 10.906 7.802 1.00 8.54 ? 5 DA A "O5'" 1 ATOM 87 C "C5'" . DA A 1 5 ? 7.812 9.915 7.552 1.00 7.11 ? 5 DA A "C5'" 1 ATOM 88 C "C4'" . DA A 1 5 ? 7.316 9.001 6.452 1.00 5.61 ? 5 DA A "C4'" 1 ATOM 89 O "O4'" . DA A 1 5 ? 7.168 9.751 5.219 1.00 5.50 ? 5 DA A "O4'" 1 ATOM 90 C "C3'" . DA A 1 5 ? 8.263 7.863 6.122 1.00 5.46 ? 5 DA A "C3'" 1 ATOM 91 O "O3'" . DA A 1 5 ? 7.977 6.778 6.981 1.00 5.34 ? 5 DA A "O3'" 1 ATOM 92 C "C2'" . DA A 1 5 ? 7.937 7.588 4.660 1.00 5.42 ? 5 DA A "C2'" 1 ATOM 93 C "C1'" . DA A 1 5 ? 7.739 9.013 4.155 1.00 4.60 ? 5 DA A "C1'" 1 ATOM 94 N N9 . DA A 1 5 ? 8.952 9.703 3.703 1.00 4.32 ? 5 DA A N9 1 ATOM 95 C C8 . DA A 1 5 ? 9.543 10.809 4.255 1.00 4.09 ? 5 DA A C8 1 ATOM 96 N N7 . DA A 1 5 ? 10.612 11.222 3.615 1.00 4.59 ? 5 DA A N7 1 ATOM 97 C C5 . DA A 1 5 ? 10.724 10.334 2.560 1.00 4.33 ? 5 DA A C5 1 ATOM 98 C C6 . DA A 1 5 ? 11.658 10.229 1.504 1.00 3.91 ? 5 DA A C6 1 ATOM 99 N N6 . DA A 1 5 ? 12.681 11.071 1.339 1.00 5.13 ? 5 DA A N6 1 ATOM 100 N N1 . DA A 1 5 ? 11.489 9.225 0.612 1.00 3.90 ? 5 DA A N1 1 ATOM 101 C C2 . DA A 1 5 ? 10.461 8.375 0.774 1.00 4.17 ? 5 DA A C2 1 ATOM 102 N N3 . DA A 1 5 ? 9.523 8.381 1.727 1.00 4.42 ? 5 DA A N3 1 ATOM 103 C C4 . DA A 1 5 ? 9.711 9.392 2.594 1.00 4.61 ? 5 DA A C4 1 HETATM 104 P P . 5HC A 1 6 ? 9.181 5.885 7.545 1.00 5.84 ? 6 5HC A P 1 HETATM 105 O OP1 . 5HC A 1 6 ? 8.567 4.917 8.480 1.00 7.26 ? 6 5HC A OP1 1 HETATM 106 O OP2 . 5HC A 1 6 ? 10.290 6.743 7.996 1.00 5.87 ? 6 5HC A OP2 1 HETATM 107 O "O5'" . 5HC A 1 6 ? 9.717 5.134 6.243 1.00 5.20 ? 6 5HC A "O5'" 1 HETATM 108 C "C5'" . 5HC A 1 6 ? 8.910 4.178 5.553 1.00 5.26 ? 6 5HC A "C5'" 1 HETATM 109 C "C4'" . 5HC A 1 6 ? 9.564 3.787 4.240 1.00 5.15 ? 6 5HC A "C4'" 1 HETATM 110 O "O4'" . 5HC A 1 6 ? 9.721 4.944 3.383 1.00 4.69 ? 6 5HC A "O4'" 1 HETATM 111 C "C3'" . 5HC A 1 6 ? 10.977 3.238 4.357 1.00 5.03 ? 6 5HC A "C3'" 1 HETATM 112 O "O3'" . 5HC A 1 6 ? 10.929 1.876 4.747 1.00 6.05 ? 6 5HC A "O3'" 1 HETATM 113 C "C2'" . 5HC A 1 6 ? 11.498 3.430 2.940 1.00 5.75 ? 6 5HC A "C2'" 1 HETATM 114 C "C1'" . 5HC A 1 6 ? 10.916 4.802 2.633 1.00 5.00 ? 6 5HC A "C1'" 1 HETATM 115 N N1 . 5HC A 1 6 ? 11.848 5.951 2.916 1.00 4.52 ? 6 5HC A N1 1 HETATM 116 C C2 . 5HC A 1 6 ? 12.862 6.179 2.008 1.00 4.19 ? 6 5HC A C2 1 HETATM 117 O O2 . 5HC A 1 6 ? 13.015 5.477 1.020 1.00 4.78 ? 6 5HC A O2 1 HETATM 118 N N3 . 5HC A 1 6 ? 13.681 7.245 2.300 1.00 4.28 ? 6 5HC A N3 1 HETATM 119 C C4 . 5HC A 1 6 ? 13.586 8.096 3.390 1.00 4.66 ? 6 5HC A C4 1 HETATM 120 N N4 . 5HC A 1 6 ? 14.370 9.033 3.546 1.00 5.23 ? 6 5HC A N4 1 HETATM 121 C C5 . 5HC A 1 6 ? 12.501 7.800 4.311 1.00 4.64 ? 6 5HC A C5 1 HETATM 122 C C5M . 5HC A 1 6 ? 12.303 8.608 5.587 1.00 5.58 ? 6 5HC A C5M 1 HETATM 123 O O5 . 5HC A 1 6 ? 13.483 8.552 6.379 1.00 6.82 ? 6 5HC A O5 1 HETATM 124 C C6 . 5HC A 1 6 ? 11.696 6.761 4.030 1.00 4.13 ? 6 5HC A C6 1 ATOM 125 P P . DA A 1 7 ? 12.158 1.198 5.508 1.00 5.89 ? 7 DA A P 1 ATOM 126 O OP1 . DA A 1 7 ? 11.673 -0.109 6.005 1.00 7.06 ? 7 DA A OP1 1 ATOM 127 O OP2 . DA A 1 7 ? 12.783 2.158 6.444 1.00 5.48 ? 7 DA A OP2 1 ATOM 128 O "O5'" . DA A 1 7 ? 13.232 0.951 4.348 1.00 5.64 ? 7 DA A "O5'" 1 ATOM 129 C "C5'" . DA A 1 7 ? 12.991 0.000 3.317 1.00 5.63 ? 7 DA A "C5'" 1 ATOM 130 C "C4'" . DA A 1 7 ? 14.163 -0.017 2.358 1.00 4.96 ? 7 DA A "C4'" 1 ATOM 131 O "O4'" . DA A 1 7 ? 14.303 1.288 1.735 1.00 4.61 ? 7 DA A "O4'" 1 ATOM 132 C "C3'" . DA A 1 7 ? 15.514 -0.278 3.007 1.00 4.71 ? 7 DA A "C3'" 1 ATOM 133 O "O3'" . DA A 1 7 ? 15.738 -1.680 3.075 1.00 5.50 ? 7 DA A "O3'" 1 ATOM 134 C "C2'" . DA A 1 7 ? 16.489 0.412 2.057 1.00 4.79 ? 7 DA A "C2'" 1 ATOM 135 C "C1'" . DA A 1 7 ? 15.679 1.610 1.604 1.00 3.99 ? 7 DA A "C1'" 1 ATOM 136 N N9 . DA A 1 7 ? 15.883 2.877 2.308 1.00 3.40 ? 7 DA A N9 1 ATOM 137 C C8 . DA A 1 7 ? 15.155 3.377 3.360 1.00 3.73 ? 7 DA A C8 1 ATOM 138 N N7 . DA A 1 7 ? 15.542 4.567 3.745 1.00 3.36 ? 7 DA A N7 1 ATOM 139 C C5 . DA A 1 7 ? 16.587 4.872 2.889 1.00 3.06 ? 7 DA A C5 1 ATOM 140 C C6 . DA A 1 7 ? 17.425 6.003 2.777 1.00 3.41 ? 7 DA A C6 1 ATOM 141 N N6 . DA A 1 7 ? 17.306 7.068 3.575 1.00 3.33 ? 7 DA A N6 1 ATOM 142 N N1 . DA A 1 7 ? 18.377 5.983 1.810 1.00 3.63 ? 7 DA A N1 1 ATOM 143 C C2 . DA A 1 7 ? 18.475 4.910 1.013 1.00 4.00 ? 7 DA A C2 1 ATOM 144 N N3 . DA A 1 7 ? 17.743 3.797 1.028 1.00 3.84 ? 7 DA A N3 1 ATOM 145 C C4 . DA A 1 7 ? 16.805 3.842 1.994 1.00 3.21 ? 7 DA A C4 1 ATOM 146 P P . DC A 1 8 ? 16.675 -2.300 4.209 1.00 6.04 ? 8 DC A P 1 ATOM 147 O OP1 . DC A 1 8 ? 16.614 -3.769 4.023 1.00 6.67 ? 8 DC A OP1 1 ATOM 148 O OP2 . DC A 1 8 ? 16.311 -1.733 5.527 1.00 7.06 ? 8 DC A OP2 1 ATOM 149 O "O5'" . DC A 1 8 ? 18.136 -1.784 3.830 1.00 5.84 ? 8 DC A "O5'" 1 ATOM 150 C "C5'" . DC A 1 8 ? 18.779 -2.276 2.650 1.00 6.30 ? 8 DC A "C5'" 1 ATOM 151 C "C4'" . DC A 1 8 ? 20.122 -1.598 2.457 1.00 5.85 ? 8 DC A "C4'" 1 ATOM 152 O "O4'" . DC A 1 8 ? 19.898 -0.167 2.399 1.00 5.43 ? 8 DC A "O4'" 1 ATOM 153 C "C3'" . DC A 1 8 ? 21.133 -1.867 3.572 1.00 7.25 ? 8 DC A "C3'" 1 ATOM 154 O "O3'" . DC A 1 8 ? 22.404 -2.214 3.032 1.00 9.43 ? 8 DC A "O3'" 1 ATOM 155 C "C2'" . DC A 1 8 ? 21.212 -0.542 4.315 1.00 6.52 ? 8 DC A "C2'" 1 ATOM 156 C "C1'" . DC A 1 8 ? 20.810 0.482 3.252 1.00 5.93 ? 8 DC A "C1'" 1 ATOM 157 N N1 . DC A 1 8 ? 20.192 1.710 3.850 1.00 5.05 ? 8 DC A N1 1 ATOM 158 C C2 . DC A 1 8 ? 20.767 2.971 3.615 1.00 5.32 ? 8 DC A C2 1 ATOM 159 O O2 . DC A 1 8 ? 21.764 3.064 2.884 1.00 5.31 ? 8 DC A O2 1 ATOM 160 N N3 . DC A 1 8 ? 20.189 4.058 4.194 1.00 4.51 ? 8 DC A N3 1 ATOM 161 C C4 . DC A 1 8 ? 19.107 3.924 4.972 1.00 4.92 ? 8 DC A C4 1 ATOM 162 N N4 . DC A 1 8 ? 18.596 5.021 5.531 1.00 4.81 ? 8 DC A N4 1 ATOM 163 C C5 . DC A 1 8 ? 18.503 2.654 5.212 1.00 4.42 ? 8 DC A C5 1 ATOM 164 C C6 . DC A 1 8 ? 19.080 1.588 4.643 1.00 5.12 ? 8 DC A C6 1 HETATM 165 O O . HOH B 2 . ? 8.855 2.342 8.808 1.00 20.91 ? 101 HOH A O 1 HETATM 166 O O . HOH B 2 . ? 5.983 4.743 8.948 1.00 19.46 ? 102 HOH A O 1 HETATM 167 O O . HOH B 2 . ? 17.014 0.079 7.337 1.00 11.75 ? 103 HOH A O 1 HETATM 168 O O . HOH B 2 . ? 12.362 18.808 5.831 1.00 19.27 ? 104 HOH A O 1 HETATM 169 O O . HOH B 2 . ? 16.529 26.613 -0.862 1.00 12.85 ? 105 HOH A O 1 HETATM 170 O O . HOH B 2 . ? 14.359 26.099 2.564 1.00 22.11 ? 106 HOH A O 1 HETATM 171 O O . HOH B 2 . ? 11.580 20.006 -6.502 1.00 24.21 ? 107 HOH A O 1 HETATM 172 O O . HOH B 2 . ? 3.898 21.995 -0.226 1.00 8.12 ? 108 HOH A O 1 HETATM 173 O O . HOH B 2 . ? 8.811 18.025 -6.464 1.00 9.20 ? 109 HOH A O 1 HETATM 174 O O . HOH B 2 . ? 4.145 25.975 -2.854 1.00 14.63 ? 110 HOH A O 1 HETATM 175 O O . HOH B 2 . ? 12.270 18.980 -0.414 1.00 11.91 ? 111 HOH A O 1 HETATM 176 O O . HOH B 2 . ? 14.065 -4.680 4.516 1.00 16.65 ? 112 HOH A O 1 HETATM 177 O O . HOH B 2 . ? 12.908 5.934 8.352 1.00 10.00 ? 113 HOH A O 1 HETATM 178 O O . HOH B 2 . ? 16.708 -5.044 1.573 1.00 6.37 ? 114 HOH A O 1 HETATM 179 O O . HOH B 2 . ? 15.872 7.167 6.136 1.00 6.04 ? 115 HOH A O 1 HETATM 180 O O . HOH B 2 . ? 12.429 13.021 4.690 1.00 19.04 ? 116 HOH A O 1 HETATM 181 O O . HOH B 2 . ? 13.767 -1.862 6.644 1.00 11.78 ? 117 HOH A O 1 HETATM 182 O O . HOH B 2 . ? 10.151 8.693 9.992 1.00 18.90 ? 118 HOH A O 1 HETATM 183 O O . HOH B 2 . ? 13.371 21.750 -3.551 1.00 22.82 ? 119 HOH A O 1 HETATM 184 O O . HOH B 2 . ? 13.179 21.450 0.260 1.00 13.01 ? 120 HOH A O 1 HETATM 185 O O . HOH B 2 . ? 7.166 6.863 1.334 1.00 5.81 ? 121 HOH A O 1 HETATM 186 O O . HOH B 2 . ? 15.490 2.308 7.295 1.00 10.44 ? 122 HOH A O 1 HETATM 187 O O . HOH B 2 . ? 13.719 4.839 5.938 1.00 6.82 ? 123 HOH A O 1 HETATM 188 O O . HOH B 2 . ? 14.304 23.431 -8.206 1.00 11.86 ? 124 HOH A O 1 HETATM 189 O O . HOH B 2 . ? 24.005 -0.163 1.743 1.00 21.93 ? 125 HOH A O 1 HETATM 190 O O . HOH B 2 . ? 24.242 -4.269 3.962 1.00 26.47 ? 126 HOH A O 1 HETATM 191 O O . HOH B 2 . ? 18.998 1.354 -0.021 1.00 7.17 ? 127 HOH A O 1 HETATM 192 O O . HOH B 2 . ? 6.701 20.185 8.659 1.00 9.99 ? 128 HOH A O 1 HETATM 193 O O . HOH B 2 . ? 11.052 14.568 6.438 1.00 28.33 ? 129 HOH A O 1 HETATM 194 O O . HOH B 2 . ? 14.731 11.505 5.457 1.00 26.16 ? 130 HOH A O 1 HETATM 195 O O . HOH B 2 . ? 12.294 26.750 5.336 1.00 30.09 ? 131 HOH A O 1 HETATM 196 O O . HOH B 2 . ? 24.420 1.255 4.068 1.00 11.12 ? 132 HOH A O 1 HETATM 197 O O . HOH B 2 . ? 4.084 24.970 -0.235 1.00 16.26 ? 133 HOH A O 1 HETATM 198 O O . HOH B 2 . ? 6.119 4.628 2.616 1.00 11.13 ? 134 HOH A O 1 HETATM 199 O O . HOH B 2 . ? 11.969 -3.446 3.203 1.00 13.74 ? 135 HOH A O 1 HETATM 200 O O . HOH B 2 . ? 13.357 17.901 -2.488 1.00 27.72 ? 136 HOH A O 1 HETATM 201 O O . HOH B 2 . ? 8.226 8.218 11.885 0.50 39.58 ? 137 HOH A O 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 UMS 2 2 2 UMS UMS A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 5HC 6 6 6 5HC HMC A . n A 1 7 DA 7 7 7 DA A A . n A 1 8 DC 8 8 8 DC C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 101 17 HOH HOH A . B 2 HOH 2 102 33 HOH HOH A . B 2 HOH 3 103 9 HOH HOH A . B 2 HOH 4 104 16 HOH HOH A . B 2 HOH 5 105 10 HOH HOH A . B 2 HOH 6 106 18 HOH HOH A . B 2 HOH 7 107 37 HOH HOH A . B 2 HOH 8 108 7 HOH HOH A . B 2 HOH 9 109 36 HOH HOH A . B 2 HOH 10 110 14 HOH HOH A . B 2 HOH 11 111 11 HOH HOH A . B 2 HOH 12 112 25 HOH HOH A . B 2 HOH 13 113 12 HOH HOH A . B 2 HOH 14 114 8 HOH HOH A . B 2 HOH 15 115 5 HOH HOH A . B 2 HOH 16 116 23 HOH HOH A . B 2 HOH 17 117 6 HOH HOH A . B 2 HOH 18 118 22 HOH HOH A . B 2 HOH 19 119 30 HOH HOH A . B 2 HOH 20 120 20 HOH HOH A . B 2 HOH 21 121 1 HOH HOH A . B 2 HOH 22 122 15 HOH HOH A . B 2 HOH 23 123 4 HOH HOH A . B 2 HOH 24 124 32 HOH HOH A . B 2 HOH 25 125 24 HOH HOH A . B 2 HOH 26 126 34 HOH HOH A . B 2 HOH 27 127 3 HOH HOH A . B 2 HOH 28 128 2 HOH HOH A . B 2 HOH 29 129 28 HOH HOH A . B 2 HOH 30 130 31 HOH HOH A . B 2 HOH 31 131 13 HOH HOH A . B 2 HOH 32 132 21 HOH HOH A . B 2 HOH 33 133 27 HOH HOH A . B 2 HOH 34 134 19 HOH HOH A . B 2 HOH 35 135 35 HOH HOH A . B 2 HOH 36 136 26 HOH HOH A . B 2 HOH 37 137 29 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1930 ? 1 MORE 7 ? 1 'SSA (A^2)' 2920 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 137 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-07-20 2 'Structure model' 2 0 2021-01-20 3 'Structure model' 2 1 2023-09-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Derived calculations' 3 2 'Structure model' 'Polymer sequence' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Database references' 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' entity_poly 2 2 'Structure model' pdbx_prerelease_seq 3 2 'Structure model' pdbx_struct_oper_list 4 3 'Structure model' chem_comp_atom 5 3 'Structure model' chem_comp_bond 6 3 'Structure model' database_2 7 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_entity_poly.type' 2 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 3 3 'Structure model' '_database_2.pdbx_DOI' 4 3 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.2.0019 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DG 3 ? ? "C5'" A DG 3 ? ? "C4'" A DG 3 ? ? 100.74 109.40 -8.66 0.80 N 2 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.73 108.30 2.43 0.30 N 3 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.29 108.30 1.99 0.30 N 4 1 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 110.63 108.30 2.33 0.30 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5HC P P N N 1 5HC OP1 O N N 2 5HC OP2 O N N 3 5HC "O5'" O N N 4 5HC "C5'" C N N 5 5HC "C4'" C N R 6 5HC "O4'" O N N 7 5HC "C3'" C N S 8 5HC "O3'" O N N 9 5HC "C2'" C N N 10 5HC "C1'" C N R 11 5HC N1 N N N 12 5HC C2 C N N 13 5HC O2 O N N 14 5HC N3 N N N 15 5HC C4 C N N 16 5HC N4 N N N 17 5HC C5 C N N 18 5HC C5M C N N 19 5HC O5 O N N 20 5HC C6 C N N 21 5HC OP3 O N N 22 5HC HOP2 H N N 23 5HC "H5'" H N N 24 5HC "H5''" H N N 25 5HC H4 H N N 26 5HC "H3'" H N N 27 5HC "HO3'" H N N 28 5HC "H2'" H N N 29 5HC "H2''" H N N 30 5HC "H1'" H N N 31 5HC HN41 H N N 32 5HC HN42 H N N 33 5HC H5M2 H N N 34 5HC H5M1 H N N 35 5HC HO5 H N N 36 5HC H6 H N N 37 5HC HOP3 H N N 38 DA OP3 O N N 39 DA P P N N 40 DA OP1 O N N 41 DA OP2 O N N 42 DA "O5'" O N N 43 DA "C5'" C N N 44 DA "C4'" C N R 45 DA "O4'" O N N 46 DA "C3'" C N S 47 DA "O3'" O N N 48 DA "C2'" C N N 49 DA "C1'" C N R 50 DA N9 N Y N 51 DA C8 C Y N 52 DA N7 N Y N 53 DA C5 C Y N 54 DA C6 C Y N 55 DA N6 N N N 56 DA N1 N Y N 57 DA C2 C Y N 58 DA N3 N Y N 59 DA C4 C Y N 60 DA HOP3 H N N 61 DA HOP2 H N N 62 DA "H5'" H N N 63 DA "H5''" H N N 64 DA "H4'" H N N 65 DA "H3'" H N N 66 DA "HO3'" H N N 67 DA "H2'" H N N 68 DA "H2''" H N N 69 DA "H1'" H N N 70 DA H8 H N N 71 DA H61 H N N 72 DA H62 H N N 73 DA H2 H N N 74 DC OP3 O N N 75 DC P P N N 76 DC OP1 O N N 77 DC OP2 O N N 78 DC "O5'" O N N 79 DC "C5'" C N N 80 DC "C4'" C N R 81 DC "O4'" O N N 82 DC "C3'" C N S 83 DC "O3'" O N N 84 DC "C2'" C N N 85 DC "C1'" C N R 86 DC N1 N N N 87 DC C2 C N N 88 DC O2 O N N 89 DC N3 N N N 90 DC C4 C N N 91 DC N4 N N N 92 DC C5 C N N 93 DC C6 C N N 94 DC HOP3 H N N 95 DC HOP2 H N N 96 DC "H5'" H N N 97 DC "H5''" H N N 98 DC "H4'" H N N 99 DC "H3'" H N N 100 DC "HO3'" H N N 101 DC "H2'" H N N 102 DC "H2''" H N N 103 DC "H1'" H N N 104 DC H41 H N N 105 DC H42 H N N 106 DC H5 H N N 107 DC H6 H N N 108 DG OP3 O N N 109 DG P P N N 110 DG OP1 O N N 111 DG OP2 O N N 112 DG "O5'" O N N 113 DG "C5'" C N N 114 DG "C4'" C N R 115 DG "O4'" O N N 116 DG "C3'" C N S 117 DG "O3'" O N N 118 DG "C2'" C N N 119 DG "C1'" C N R 120 DG N9 N Y N 121 DG C8 C Y N 122 DG N7 N Y N 123 DG C5 C Y N 124 DG C6 C N N 125 DG O6 O N N 126 DG N1 N N N 127 DG C2 C N N 128 DG N2 N N N 129 DG N3 N N N 130 DG C4 C Y N 131 DG HOP3 H N N 132 DG HOP2 H N N 133 DG "H5'" H N N 134 DG "H5''" H N N 135 DG "H4'" H N N 136 DG "H3'" H N N 137 DG "HO3'" H N N 138 DG "H2'" H N N 139 DG "H2''" H N N 140 DG "H1'" H N N 141 DG H8 H N N 142 DG H1 H N N 143 DG H21 H N N 144 DG H22 H N N 145 DT OP3 O N N 146 DT P P N N 147 DT OP1 O N N 148 DT OP2 O N N 149 DT "O5'" O N N 150 DT "C5'" C N N 151 DT "C4'" C N R 152 DT "O4'" O N N 153 DT "C3'" C N S 154 DT "O3'" O N N 155 DT "C2'" C N N 156 DT "C1'" C N R 157 DT N1 N N N 158 DT C2 C N N 159 DT O2 O N N 160 DT N3 N N N 161 DT C4 C N N 162 DT O4 O N N 163 DT C5 C N N 164 DT C7 C N N 165 DT C6 C N N 166 DT HOP3 H N N 167 DT HOP2 H N N 168 DT "H5'" H N N 169 DT "H5''" H N N 170 DT "H4'" H N N 171 DT "H3'" H N N 172 DT "HO3'" H N N 173 DT "H2'" H N N 174 DT "H2''" H N N 175 DT "H1'" H N N 176 DT H3 H N N 177 DT H71 H N N 178 DT H72 H N N 179 DT H73 H N N 180 DT H6 H N N 181 HOH O O N N 182 HOH H1 H N N 183 HOH H2 H N N 184 UMS OP3 O N N 185 UMS P P N N 186 UMS OP1 O N N 187 UMS OP2 O N N 188 UMS "O5'" O N N 189 UMS "C5'" C N N 190 UMS "C4'" C N R 191 UMS "O4'" O N N 192 UMS "C3'" C N R 193 UMS "O3'" O N N 194 UMS "C2'" C N R 195 UMS "SE2'" SE N N 196 UMS "C1'" C N R 197 UMS "CA'" C N N 198 UMS N1 N N N 199 UMS C2 C N N 200 UMS O2 O N N 201 UMS N3 N N N 202 UMS C4 C N N 203 UMS O4 O N N 204 UMS C5 C N N 205 UMS C6 C N N 206 UMS HOP3 H N N 207 UMS HOP2 H N N 208 UMS "H5'" H N N 209 UMS "H5'2" H N N 210 UMS "H4'" H N N 211 UMS "H3'" H N N 212 UMS "HO3'" H N N 213 UMS "H2'" H N N 214 UMS "H1'" H N N 215 UMS "HA'" H N N 216 UMS "HA'2" H N N 217 UMS "HA'3" H N N 218 UMS H3 H N N 219 UMS H5 H N N 220 UMS H6 H N N 221 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5HC "O4'" "C4'" sing N N 1 5HC "O4'" "C1'" sing N N 2 5HC "C4'" "C5'" sing N N 3 5HC "C4'" "C3'" sing N N 4 5HC O2 C2 doub N N 5 5HC "C1'" N1 sing N N 6 5HC "C1'" "C2'" sing N N 7 5HC "C5'" "O5'" sing N N 8 5HC C2 N1 sing N N 9 5HC C2 N3 sing N N 10 5HC N1 C6 sing N N 11 5HC N3 C4 doub N N 12 5HC "O5'" P sing N N 13 5HC "C2'" "C3'" sing N N 14 5HC C6 C5 doub N N 15 5HC "C3'" "O3'" sing N N 16 5HC P OP1 doub N N 17 5HC P OP2 sing N N 18 5HC C4 C5 sing N N 19 5HC C4 N4 sing N N 20 5HC C5 C5M sing N N 21 5HC C5M O5 sing N N 22 5HC P OP3 sing N N 23 5HC OP2 HOP2 sing N N 24 5HC "C5'" "H5'" sing N N 25 5HC "C5'" "H5''" sing N N 26 5HC "C4'" H4 sing N N 27 5HC "C3'" "H3'" sing N N 28 5HC "O3'" "HO3'" sing N N 29 5HC "C2'" "H2'" sing N N 30 5HC "C2'" "H2''" sing N N 31 5HC "C1'" "H1'" sing N N 32 5HC N4 HN41 sing N N 33 5HC N4 HN42 sing N N 34 5HC C5M H5M2 sing N N 35 5HC C5M H5M1 sing N N 36 5HC O5 HO5 sing N N 37 5HC C6 H6 sing N N 38 5HC OP3 HOP3 sing N N 39 DA OP3 P sing N N 40 DA OP3 HOP3 sing N N 41 DA P OP1 doub N N 42 DA P OP2 sing N N 43 DA P "O5'" sing N N 44 DA OP2 HOP2 sing N N 45 DA "O5'" "C5'" sing N N 46 DA "C5'" "C4'" sing N N 47 DA "C5'" "H5'" sing N N 48 DA "C5'" "H5''" sing N N 49 DA "C4'" "O4'" sing N N 50 DA "C4'" "C3'" sing N N 51 DA "C4'" "H4'" sing N N 52 DA "O4'" "C1'" sing N N 53 DA "C3'" "O3'" sing N N 54 DA "C3'" "C2'" sing N N 55 DA "C3'" "H3'" sing N N 56 DA "O3'" "HO3'" sing N N 57 DA "C2'" "C1'" sing N N 58 DA "C2'" "H2'" sing N N 59 DA "C2'" "H2''" sing N N 60 DA "C1'" N9 sing N N 61 DA "C1'" "H1'" sing N N 62 DA N9 C8 sing Y N 63 DA N9 C4 sing Y N 64 DA C8 N7 doub Y N 65 DA C8 H8 sing N N 66 DA N7 C5 sing Y N 67 DA C5 C6 sing Y N 68 DA C5 C4 doub Y N 69 DA C6 N6 sing N N 70 DA C6 N1 doub Y N 71 DA N6 H61 sing N N 72 DA N6 H62 sing N N 73 DA N1 C2 sing Y N 74 DA C2 N3 doub Y N 75 DA C2 H2 sing N N 76 DA N3 C4 sing Y N 77 DC OP3 P sing N N 78 DC OP3 HOP3 sing N N 79 DC P OP1 doub N N 80 DC P OP2 sing N N 81 DC P "O5'" sing N N 82 DC OP2 HOP2 sing N N 83 DC "O5'" "C5'" sing N N 84 DC "C5'" "C4'" sing N N 85 DC "C5'" "H5'" sing N N 86 DC "C5'" "H5''" sing N N 87 DC "C4'" "O4'" sing N N 88 DC "C4'" "C3'" sing N N 89 DC "C4'" "H4'" sing N N 90 DC "O4'" "C1'" sing N N 91 DC "C3'" "O3'" sing N N 92 DC "C3'" "C2'" sing N N 93 DC "C3'" "H3'" sing N N 94 DC "O3'" "HO3'" sing N N 95 DC "C2'" "C1'" sing N N 96 DC "C2'" "H2'" sing N N 97 DC "C2'" "H2''" sing N N 98 DC "C1'" N1 sing N N 99 DC "C1'" "H1'" sing N N 100 DC N1 C2 sing N N 101 DC N1 C6 sing N N 102 DC C2 O2 doub N N 103 DC C2 N3 sing N N 104 DC N3 C4 doub N N 105 DC C4 N4 sing N N 106 DC C4 C5 sing N N 107 DC N4 H41 sing N N 108 DC N4 H42 sing N N 109 DC C5 C6 doub N N 110 DC C5 H5 sing N N 111 DC C6 H6 sing N N 112 DG OP3 P sing N N 113 DG OP3 HOP3 sing N N 114 DG P OP1 doub N N 115 DG P OP2 sing N N 116 DG P "O5'" sing N N 117 DG OP2 HOP2 sing N N 118 DG "O5'" "C5'" sing N N 119 DG "C5'" "C4'" sing N N 120 DG "C5'" "H5'" sing N N 121 DG "C5'" "H5''" sing N N 122 DG "C4'" "O4'" sing N N 123 DG "C4'" "C3'" sing N N 124 DG "C4'" "H4'" sing N N 125 DG "O4'" "C1'" sing N N 126 DG "C3'" "O3'" sing N N 127 DG "C3'" "C2'" sing N N 128 DG "C3'" "H3'" sing N N 129 DG "O3'" "HO3'" sing N N 130 DG "C2'" "C1'" sing N N 131 DG "C2'" "H2'" sing N N 132 DG "C2'" "H2''" sing N N 133 DG "C1'" N9 sing N N 134 DG "C1'" "H1'" sing N N 135 DG N9 C8 sing Y N 136 DG N9 C4 sing Y N 137 DG C8 N7 doub Y N 138 DG C8 H8 sing N N 139 DG N7 C5 sing Y N 140 DG C5 C6 sing N N 141 DG C5 C4 doub Y N 142 DG C6 O6 doub N N 143 DG C6 N1 sing N N 144 DG N1 C2 sing N N 145 DG N1 H1 sing N N 146 DG C2 N2 sing N N 147 DG C2 N3 doub N N 148 DG N2 H21 sing N N 149 DG N2 H22 sing N N 150 DG N3 C4 sing N N 151 DT OP3 P sing N N 152 DT OP3 HOP3 sing N N 153 DT P OP1 doub N N 154 DT P OP2 sing N N 155 DT P "O5'" sing N N 156 DT OP2 HOP2 sing N N 157 DT "O5'" "C5'" sing N N 158 DT "C5'" "C4'" sing N N 159 DT "C5'" "H5'" sing N N 160 DT "C5'" "H5''" sing N N 161 DT "C4'" "O4'" sing N N 162 DT "C4'" "C3'" sing N N 163 DT "C4'" "H4'" sing N N 164 DT "O4'" "C1'" sing N N 165 DT "C3'" "O3'" sing N N 166 DT "C3'" "C2'" sing N N 167 DT "C3'" "H3'" sing N N 168 DT "O3'" "HO3'" sing N N 169 DT "C2'" "C1'" sing N N 170 DT "C2'" "H2'" sing N N 171 DT "C2'" "H2''" sing N N 172 DT "C1'" N1 sing N N 173 DT "C1'" "H1'" sing N N 174 DT N1 C2 sing N N 175 DT N1 C6 sing N N 176 DT C2 O2 doub N N 177 DT C2 N3 sing N N 178 DT N3 C4 sing N N 179 DT N3 H3 sing N N 180 DT C4 O4 doub N N 181 DT C4 C5 sing N N 182 DT C5 C7 sing N N 183 DT C5 C6 doub N N 184 DT C7 H71 sing N N 185 DT C7 H72 sing N N 186 DT C7 H73 sing N N 187 DT C6 H6 sing N N 188 HOH O H1 sing N N 189 HOH O H2 sing N N 190 UMS OP3 P sing N N 191 UMS OP3 HOP3 sing N N 192 UMS P OP1 doub N N 193 UMS P OP2 sing N N 194 UMS P "O5'" sing N N 195 UMS OP2 HOP2 sing N N 196 UMS "O5'" "C5'" sing N N 197 UMS "C5'" "C4'" sing N N 198 UMS "C5'" "H5'" sing N N 199 UMS "C5'" "H5'2" sing N N 200 UMS "C4'" "O4'" sing N N 201 UMS "C4'" "C3'" sing N N 202 UMS "C4'" "H4'" sing N N 203 UMS "O4'" "C1'" sing N N 204 UMS "C3'" "O3'" sing N N 205 UMS "C3'" "C2'" sing N N 206 UMS "C3'" "H3'" sing N N 207 UMS "O3'" "HO3'" sing N N 208 UMS "C2'" "SE2'" sing N N 209 UMS "C2'" "C1'" sing N N 210 UMS "C2'" "H2'" sing N N 211 UMS "SE2'" "CA'" sing N N 212 UMS "C1'" N1 sing N N 213 UMS "C1'" "H1'" sing N N 214 UMS "CA'" "HA'" sing N N 215 UMS "CA'" "HA'2" sing N N 216 UMS "CA'" "HA'3" sing N N 217 UMS N1 C2 sing N N 218 UMS N1 C6 sing N N 219 UMS C2 O2 doub N N 220 UMS C2 N3 sing N N 221 UMS N3 C4 sing N N 222 UMS N3 H3 sing N N 223 UMS C4 O4 doub N N 224 UMS C4 C5 sing N N 225 UMS C5 C6 doub N N 226 UMS C5 H5 sing N N 227 UMS C6 H6 sing N N 228 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5CH0 'a-form double helix' 5CH0 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 8 7_555 -0.279 -0.107 -0.352 -19.065 -12.297 -1.881 1 A_DG1:DC8_A A 1 ? A 8 ? 19 1 1 A UMS 2 1_555 A DA 7 7_555 0.000 -0.120 0.205 -9.042 -11.494 2.123 2 A_UMS2:DA7_A A 2 ? A 7 ? 20 1 1 A DG 3 1_555 A 5HC 6 7_555 -0.264 -0.178 0.266 -4.827 -12.702 1.100 3 A_DG3:5HC6_A A 3 ? A 6 ? 19 1 1 A DT 4 1_555 A DA 5 7_555 -0.116 -0.145 0.316 -4.339 -8.449 -4.451 4 A_DT4:DA5_A A 4 ? A 5 ? 20 1 1 A DA 5 1_555 A DT 4 7_555 0.116 -0.145 0.317 4.339 -8.449 -4.451 5 A_DA5:DT4_A A 5 ? A 4 ? 20 1 1 A 5HC 6 1_555 A DG 3 7_555 0.264 -0.178 0.266 4.827 -12.702 1.100 6 A_5HC6:DG3_A A 6 ? A 3 ? 19 1 1 A DA 7 1_555 A UMS 2 7_555 0.000 -0.120 0.205 9.042 -11.494 2.123 7 A_DA7:UMS2_A A 7 ? A 2 ? 20 1 1 A DC 8 1_555 A DG 1 7_555 0.279 -0.107 -0.352 19.065 -12.297 -1.881 8 A_DC8:DG1_A A 8 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 8 7_555 A UMS 2 1_555 A DA 7 7_555 0.426 -0.924 3.116 -3.433 13.146 30.262 -3.600 -1.265 2.453 23.734 6.198 33.107 1 AA_DG1UMS2:DA7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ? 1 A UMS 2 1_555 A DA 7 7_555 A DG 3 1_555 A 5HC 6 7_555 0.818 -1.374 3.042 0.848 9.933 30.676 -4.017 -1.343 2.508 18.183 -1.552 32.218 2 AA_UMS2DG3:5HC6DA7_AA A 2 ? A 7 ? A 3 ? A 6 ? 1 A DG 3 1_555 A 5HC 6 7_555 A DT 4 1_555 A DA 5 7_555 -0.280 -1.883 3.322 0.367 -0.201 33.639 -3.220 0.544 3.330 -0.347 -0.634 33.641 3 AA_DG3DT4:DA55HC6_AA A 3 ? A 6 ? A 4 ? A 5 ? 1 A DT 4 1_555 A DA 5 7_555 A DA 5 1_555 A DT 4 7_555 0.000 -1.616 2.963 0.000 5.455 29.159 -4.147 0.000 2.623 10.716 0.000 29.654 4 AA_DT4DA5:DT4DA5_AA A 4 ? A 5 ? A 5 ? A 4 ? 1 A DA 5 1_555 A DT 4 7_555 A 5HC 6 1_555 A DG 3 7_555 0.280 -1.883 3.322 -0.367 -0.201 33.639 -3.220 -0.544 3.330 -0.347 0.634 33.641 5 AA_DA55HC6:DG3DT4_AA A 5 ? A 4 ? A 6 ? A 3 ? 1 A 5HC 6 1_555 A DG 3 7_555 A DA 7 1_555 A UMS 2 7_555 -0.818 -1.374 3.042 -0.848 9.933 30.676 -4.017 1.343 2.508 18.183 1.552 32.218 6 AA_5HC6DA7:UMS2DG3_AA A 6 ? A 3 ? A 7 ? A 2 ? 1 A DA 7 1_555 A UMS 2 7_555 A DC 8 1_555 A DG 1 7_555 -0.426 -0.924 3.116 3.433 13.146 30.262 -3.600 1.265 2.453 23.734 -6.198 33.107 7 AA_DA7DC8:DG1UMS2_AA A 7 ? A 2 ? A 8 ? A 1 ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1Z7I _pdbx_initial_refinement_model.details ? #