data_5WHN # _entry.id 5WHN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5WHN pdb_00005whn 10.2210/pdb5whn/pdb WWPDB D_1000229038 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5WHN _pdbx_database_status.recvd_initial_deposition_date 2017-07-17 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Guenther, E.L.' 1 ? 'Sawaya, M.R.' 2 ? 'Eisenberg, D.S.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat. Struct. Mol. Biol.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1545-9985 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 25 _citation.language ? _citation.page_first 463 _citation.page_last 471 _citation.title 'Atomic structures of TDP-43 LCD segments and insights into reversible or pathogenic aggregation.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41594-018-0064-2 _citation.pdbx_database_id_PubMed 29786080 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Guenther, E.L.' 1 ? primary 'Cao, Q.' 2 ? primary 'Trinh, H.' 3 ? primary 'Lu, J.' 4 ? primary 'Sawaya, M.R.' 5 ? primary 'Cascio, D.' 6 ? primary 'Boyer, D.R.' 7 ? primary 'Rodriguez, J.A.' 8 ? primary 'Hughes, M.P.' 9 ? primary 'Eisenberg, D.S.' 10 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5WHN _cell.details ? _cell.formula_units_Z ? _cell.length_a 13.820 _cell.length_a_esd ? _cell.length_b 4.850 _cell.length_b_esd ? _cell.length_c 46.740 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WHN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Segment of TAR DNA-binding protein 43' _entity.formula_weight 641.673 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'UNP residues 312-317' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name TDP-43 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code NFGAFS _entity_poly.pdbx_seq_one_letter_code_can NFGAFS _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 PHE n 1 3 GLY n 1 4 ALA n 1 5 PHE n 1 6 SER n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 6 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details 'Synthetic peptide NFGAFS corresponding tosegment 312-317 of TDP-43' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TADBP_HUMAN _struct_ref.pdbx_db_accession Q13148 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code NFGAFS _struct_ref.pdbx_align_begin 312 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5WHN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q13148 _struct_ref_seq.db_align_beg 312 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 317 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 312 _struct_ref_seq.pdbx_auth_seq_align_end 317 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5WHN _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 4.2 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '100mM phosphate/citrate 4.2, 40% ethanol, 5% PEG 1000' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-06-20 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9791 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9791 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 4.490 _reflns.entry_id 5WHN _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.100 _reflns.d_resolution_low 13.253 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 1447 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.000 _reflns.percent_possible_obs 94.000 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 8.299 _reflns.pdbx_Rmerge_I_obs 0.172 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 9.650 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.955 _reflns.pdbx_scaling_rejects 11 _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.184 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 12008 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.991 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.100 1.140 ? 2.520 ? ? ? ? 123 75.900 ? ? ? ? 0.726 ? ? ? ? ? ? ? ? 6.374 ? ? ? ? 0.789 ? ? 1 1 0.823 ? 1.140 1.190 ? 3.850 ? ? ? ? 142 90.400 ? ? ? ? 0.517 ? ? ? ? ? ? ? ? 7.535 ? ? ? ? 0.553 ? ? 2 1 0.909 ? 1.190 1.240 ? 6.020 ? ? ? ? 119 83.800 ? ? ? ? 0.423 ? ? ? ? ? ? ? ? 9.681 ? ? ? ? 0.448 ? ? 3 1 0.941 ? 1.240 1.300 ? 7.060 ? ? ? ? 124 100.000 ? ? ? ? 0.359 ? ? ? ? ? ? ? ? 9.347 ? ? ? ? 0.383 ? ? 4 1 0.963 ? 1.300 1.370 ? 7.470 ? ? ? ? 125 99.200 ? ? ? ? 0.332 ? ? ? ? ? ? ? ? 9.376 ? ? ? ? 0.352 ? ? 5 1 0.958 ? 1.370 1.450 ? 8.660 ? ? ? ? 127 100.000 ? ? ? ? 0.284 ? ? ? ? ? ? ? ? 8.961 ? ? ? ? 0.303 ? ? 6 1 0.935 ? 1.450 1.550 ? 8.980 ? ? ? ? 127 98.400 ? ? ? ? 0.203 ? ? ? ? ? ? ? ? 7.921 ? ? ? ? 0.218 ? ? 7 1 0.988 ? 1.550 1.680 ? 10.780 ? ? ? ? 108 94.700 ? ? ? ? 0.182 ? ? ? ? ? ? ? ? 8.167 ? ? ? ? 0.196 ? ? 8 1 0.983 ? 1.680 1.840 ? 13.690 ? ? ? ? 91 97.800 ? ? ? ? 0.153 ? ? ? ? ? ? ? ? 8.879 ? ? ? ? 0.164 ? ? 9 1 0.964 ? 1.840 2.060 ? 14.980 ? ? ? ? 92 100.000 ? ? ? ? 0.119 ? ? ? ? ? ? ? ? 9.043 ? ? ? ? 0.127 ? ? 10 1 0.993 ? 2.060 2.380 ? 16.290 ? ? ? ? 99 100.000 ? ? ? ? 0.112 ? ? ? ? ? ? ? ? 7.939 ? ? ? ? 0.120 ? ? 11 1 0.990 ? 2.380 2.910 ? 16.970 ? ? ? ? 70 98.600 ? ? ? ? 0.097 ? ? ? ? ? ? ? ? 7.229 ? ? ? ? 0.106 ? ? 12 1 0.992 ? 2.910 4.110 ? 18.550 ? ? ? ? 62 100.000 ? ? ? ? 0.093 ? ? ? ? ? ? ? ? 7.968 ? ? ? ? 0.099 ? ? 13 1 0.996 ? 4.110 13.253 ? 15.950 ? ? ? ? 38 92.700 ? ? ? ? 0.094 ? ? ? ? ? ? ? ? 5.763 ? ? ? ? 0.103 ? ? 14 1 0.989 ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 8.390 _refine.B_iso_mean 4.5500 _refine.B_iso_min 3.060 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5WHN _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.100 _refine.ls_d_res_low 13.2530 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 1445 _refine.ls_number_reflns_R_free 145 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 93.8900 _refine.ls_percent_reflns_R_free 10.0300 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1360 _refine.ls_R_factor_R_free 0.1601 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1334 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.380 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 3DGJ _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 14.3000 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.0700 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.100 _refine_hist.d_res_low 13.2530 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 46 _refine_hist.pdbx_number_residues_total 6 _refine_hist.pdbx_number_atoms_protein 46 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 ? 52 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.950 ? 70 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.100 ? 6 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 ? 10 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 12.682 ? 16 ? f_dihedral_angle_d ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.0995 _refine_ls_shell.d_res_low 13.2538 _refine_ls_shell.number_reflns_all 1445 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 145 _refine_ls_shell.number_reflns_R_work 1300 _refine_ls_shell.percent_reflns_obs 94.0000 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.1601 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.1334 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 1 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5WHN _struct.title 'Crystal structure of the segment, NFGAFS, from the low complexity domain of TDP-43, residues 312-317' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5WHN _struct_keywords.text 'Amyloid, LARKS, TDP-43, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _atom_sites.entry_id 5WHN _atom_sites.fract_transf_matrix[1][1] 0.072359 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.206186 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021395 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 N N . ASN A 1 1 ? 5.467 0.147 11.125 1.00 5.01 ? 312 ASN A N 1 ATOM 2 C CA . ASN A 1 1 ? 4.096 -0.366 11.145 1.00 3.34 ? 312 ASN A CA 1 ATOM 3 C C . ASN A 1 1 ? 3.396 0.089 9.871 1.00 3.17 ? 312 ASN A C 1 ATOM 4 O O . ASN A 1 1 ? 3.447 1.264 9.536 1.00 4.44 ? 312 ASN A O 1 ATOM 5 C CB . ASN A 1 1 ? 3.352 0.189 12.369 1.00 4.07 ? 312 ASN A CB 1 ATOM 6 C CG . ASN A 1 1 ? 1.992 -0.439 12.552 1.00 5.26 ? 312 ASN A CG 1 ATOM 7 O OD1 . ASN A 1 1 ? 1.858 -1.660 12.569 1.00 6.90 ? 312 ASN A OD1 1 ATOM 8 N ND2 . ASN A 1 1 ? 0.966 0.392 12.668 1.00 5.63 ? 312 ASN A ND2 1 ATOM 9 N N . PHE A 1 2 ? 2.764 -0.836 9.159 1.00 3.15 ? 313 PHE A N 1 ATOM 10 C CA . PHE A 1 2 ? 2.137 -0.535 7.881 1.00 3.08 ? 313 PHE A CA 1 ATOM 11 C C . PHE A 1 2 ? 0.763 -1.169 7.835 1.00 3.11 ? 313 PHE A C 1 ATOM 12 O O . PHE A 1 2 ? 0.639 -2.385 7.986 1.00 3.48 ? 313 PHE A O 1 ATOM 13 C CB . PHE A 1 2 ? 2.996 -1.087 6.732 1.00 3.06 ? 313 PHE A CB 1 ATOM 14 C CG . PHE A 1 2 ? 2.428 -0.817 5.358 1.00 3.06 ? 313 PHE A CG 1 ATOM 15 C CD1 . PHE A 1 2 ? 1.381 -1.589 4.859 1.00 3.79 ? 313 PHE A CD1 1 ATOM 16 C CD2 . PHE A 1 2 ? 2.921 0.211 4.580 1.00 3.43 ? 313 PHE A CD2 1 ATOM 17 C CE1 . PHE A 1 2 ? 0.839 -1.340 3.604 1.00 4.18 ? 313 PHE A CE1 1 ATOM 18 C CE2 . PHE A 1 2 ? 2.400 0.463 3.322 1.00 5.09 ? 313 PHE A CE2 1 ATOM 19 C CZ . PHE A 1 2 ? 1.353 -0.306 2.837 1.00 5.34 ? 313 PHE A CZ 1 ATOM 20 N N . GLY A 1 3 ? -0.261 -0.353 7.617 1.00 3.10 ? 314 GLY A N 1 ATOM 21 C CA . GLY A 1 3 ? -1.612 -0.855 7.446 1.00 3.54 ? 314 GLY A CA 1 ATOM 22 C C . GLY A 1 3 ? -2.261 -0.266 6.209 1.00 4.63 ? 314 GLY A C 1 ATOM 23 O O . GLY A 1 3 ? -2.218 0.951 5.998 1.00 5.96 ? 314 GLY A O 1 ATOM 24 N N . ALA A 1 4 ? -2.836 -1.130 5.381 1.00 3.09 ? 315 ALA A N 1 ATOM 25 C CA . ALA A 1 4 ? -3.592 -0.699 4.215 1.00 3.78 ? 315 ALA A CA 1 ATOM 26 C C . ALA A 1 4 ? -4.900 -1.492 4.185 1.00 3.24 ? 315 ALA A C 1 ATOM 27 O O . ALA A 1 4 ? -4.876 -2.728 4.220 1.00 3.85 ? 315 ALA A O 1 ATOM 28 C CB . ALA A 1 4 ? -2.790 -0.926 2.933 1.00 4.63 ? 315 ALA A CB 1 ATOM 29 N N . PHE A 1 5 ? -6.034 -0.799 4.106 1.00 3.16 ? 316 PHE A N 1 ATOM 30 C CA . PHE A 1 5 ? -7.332 -1.486 4.126 1.00 3.40 ? 316 PHE A CA 1 ATOM 31 C C . PHE A 1 5 ? -7.415 -2.434 5.318 1.00 3.37 ? 316 PHE A C 1 ATOM 32 O O . PHE A 1 5 ? -7.852 -3.574 5.198 1.00 4.45 ? 316 PHE A O 1 ATOM 33 C CB . PHE A 1 5 ? -7.568 -2.211 2.796 1.00 4.82 ? 316 PHE A CB 1 ATOM 34 C CG . PHE A 1 5 ? -7.662 -1.265 1.636 1.00 3.83 ? 316 PHE A CG 1 ATOM 35 C CD1 . PHE A 1 5 ? -8.889 -0.716 1.280 1.00 4.06 ? 316 PHE A CD1 1 ATOM 36 C CD2 . PHE A 1 5 ? -6.524 -0.872 0.938 1.00 4.39 ? 316 PHE A CD2 1 ATOM 37 C CE1 . PHE A 1 5 ? -8.985 0.190 0.239 1.00 5.36 ? 316 PHE A CE1 1 ATOM 38 C CE2 . PHE A 1 5 ? -6.615 0.043 -0.101 1.00 5.05 ? 316 PHE A CE2 1 ATOM 39 C CZ . PHE A 1 5 ? -7.851 0.568 -0.456 1.00 4.81 ? 316 PHE A CZ 1 ATOM 40 N N . SER A 1 6 ? -7.004 -1.935 6.479 1.00 4.30 ? 317 SER A N 1 ATOM 41 C CA A SER A 1 6 ? -6.869 -2.758 7.679 0.50 5.09 ? 317 SER A CA 1 ATOM 42 C CA B SER A 1 6 ? -6.921 -2.768 7.675 0.50 4.89 ? 317 SER A CA 1 ATOM 43 C C . SER A 1 6 ? -7.165 -1.949 8.923 1.00 5.71 ? 317 SER A C 1 ATOM 44 O O . SER A 1 6 ? -7.479 -0.767 8.816 1.00 8.39 ? 317 SER A O 1 ATOM 45 C CB A SER A 1 6 ? -5.449 -3.321 7.791 0.50 6.46 ? 317 SER A CB 1 ATOM 46 C CB B SER A 1 6 ? -5.545 -3.432 7.777 0.50 6.92 ? 317 SER A CB 1 ATOM 47 O OG A SER A 1 6 ? -5.206 -4.290 6.787 0.50 5.94 ? 317 SER A OG 1 ATOM 48 O OG B SER A 1 6 ? -4.520 -2.468 7.904 0.50 6.82 ? 317 SER A OG 1 ATOM 49 O OXT A SER A 1 6 ? -7.079 -2.460 10.051 0.50 6.09 ? 317 SER A OXT 1 ATOM 50 O OXT B SER A 1 6 ? -7.041 -2.451 10.051 0.50 5.96 ? 317 SER A OXT 1 # loop_ _atom_site_anisotrop.id _atom_site_anisotrop.type_symbol _atom_site_anisotrop.pdbx_label_atom_id _atom_site_anisotrop.pdbx_label_alt_id _atom_site_anisotrop.pdbx_label_comp_id _atom_site_anisotrop.pdbx_label_asym_id _atom_site_anisotrop.pdbx_label_seq_id _atom_site_anisotrop.pdbx_PDB_ins_code _atom_site_anisotrop.U[1][1] _atom_site_anisotrop.U[2][2] _atom_site_anisotrop.U[3][3] _atom_site_anisotrop.U[1][2] _atom_site_anisotrop.U[1][3] _atom_site_anisotrop.U[2][3] _atom_site_anisotrop.pdbx_auth_seq_id _atom_site_anisotrop.pdbx_auth_comp_id _atom_site_anisotrop.pdbx_auth_asym_id _atom_site_anisotrop.pdbx_auth_atom_id 1 N N . ASN A 1 ? 0.0630 0.0567 0.0706 0.0063 -0.0099 0.0050 312 ASN A N 2 C CA . ASN A 1 ? 0.0418 0.0386 0.0464 0.0050 -0.0092 0.0048 312 ASN A CA 3 C C . ASN A 1 ? 0.0409 0.0349 0.0447 0.0047 -0.0088 0.0032 312 ASN A C 4 O O . ASN A 1 ? 0.0565 0.0502 0.0621 0.0058 -0.0104 0.0015 312 ASN A O 5 C CB . ASN A 1 ? 0.0486 0.0539 0.0523 0.0058 -0.0110 0.0027 312 ASN A CB 6 C CG . ASN A 1 ? 0.0631 0.0728 0.0639 0.0042 -0.0101 0.0031 312 ASN A CG 7 O OD1 . ASN A 1 ? 0.0844 0.0932 0.0844 0.0022 -0.0088 0.0066 312 ASN A OD1 8 N ND2 . ASN A 1 ? 0.0662 0.0809 0.0667 0.0050 -0.0112 -0.0007 312 ASN A ND2 9 N N . PHE A 2 ? 0.0419 0.0341 0.0438 0.0030 -0.0070 0.0041 313 PHE A N 10 C CA . PHE A 2 ? 0.0420 0.0321 0.0427 0.0024 -0.0064 0.0029 313 PHE A CA 11 C C . PHE A 2 ? 0.0426 0.0347 0.0410 0.0012 -0.0058 0.0025 313 PHE A C 12 O O . PHE A 2 ? 0.0473 0.0389 0.0458 -0.0001 -0.0046 0.0040 313 PHE A O 13 C CB . PHE A 2 ? 0.0430 0.0289 0.0444 0.0017 -0.0046 0.0037 313 PHE A CB 14 C CG . PHE A 2 ? 0.0437 0.0292 0.0433 0.0008 -0.0040 0.0028 313 PHE A CG 15 C CD1 . PHE A 2 ? 0.0535 0.0393 0.0511 -0.0004 -0.0030 0.0018 313 PHE A CD1 16 C CD2 . PHE A 2 ? 0.0482 0.0336 0.0485 0.0009 -0.0048 0.0034 313 PHE A CD2 17 C CE1 . PHE A 2 ? 0.0589 0.0453 0.0546 -0.0013 -0.0026 0.0010 313 PHE A CE1 18 C CE2 . PHE A 2 ? 0.0694 0.0558 0.0680 -0.0003 -0.0045 0.0034 313 PHE A CE2 19 C CZ . PHE A 2 ? 0.0733 0.0603 0.0691 -0.0013 -0.0034 0.0020 313 PHE A CZ 20 N N . GLY A 3 ? 0.0420 0.0363 0.0394 0.0014 -0.0070 0.0005 314 GLY A N 21 C CA . GLY A 3 ? 0.0476 0.0437 0.0430 0.0003 -0.0065 -0.0002 314 GLY A CA 22 C C . GLY A 3 ? 0.0622 0.0567 0.0569 -0.0000 -0.0070 -0.0016 314 GLY A C 23 O O . GLY A 3 ? 0.0785 0.0732 0.0749 0.0010 -0.0090 -0.0025 314 GLY A O 24 N N . ALA A 4 ? 0.0439 0.0369 0.0368 -0.0015 -0.0054 -0.0015 315 ALA A N 25 C CA . ALA A 4 ? 0.0532 0.0457 0.0448 -0.0021 -0.0059 -0.0025 315 ALA A CA 26 C C . ALA A 4 ? 0.0463 0.0401 0.0366 -0.0031 -0.0053 -0.0036 315 ALA A C 27 O O . ALA A 4 ? 0.0542 0.0471 0.0449 -0.0041 -0.0037 -0.0030 315 ALA A O 28 C CB . ALA A 4 ? 0.0649 0.0551 0.0558 -0.0028 -0.0046 -0.0018 315 ALA A CB 29 N N . PHE A 5 ? 0.0447 0.0407 0.0347 -0.0030 -0.0068 -0.0051 316 PHE A N 30 C CA . PHE A 5 ? 0.0474 0.0452 0.0365 -0.0041 -0.0063 -0.0061 316 PHE A CA 31 C C . PHE A 5 ? 0.0460 0.0463 0.0359 -0.0047 -0.0052 -0.0048 316 PHE A C 32 O O . PHE A 5 ? 0.0596 0.0594 0.0500 -0.0061 -0.0041 -0.0039 316 PHE A O 33 C CB . PHE A 5 ? 0.0668 0.0620 0.0545 -0.0053 -0.0051 -0.0064 316 PHE A CB 34 C CG . PHE A 5 ? 0.0547 0.0495 0.0413 -0.0054 -0.0065 -0.0068 316 PHE A CG 35 C CD1 . PHE A 5 ? 0.0573 0.0535 0.0436 -0.0056 -0.0082 -0.0080 316 PHE A CD1 36 C CD2 . PHE A 5 ? 0.0623 0.0559 0.0485 -0.0053 -0.0063 -0.0054 316 PHE A CD2 37 C CE1 . PHE A 5 ? 0.0738 0.0701 0.0598 -0.0060 -0.0101 -0.0073 316 PHE A CE1 38 C CE2 . PHE A 5 ? 0.0706 0.0651 0.0562 -0.0059 -0.0080 -0.0044 316 PHE A CE2 39 C CZ . PHE A 5 ? 0.0671 0.0628 0.0527 -0.0063 -0.0101 -0.0051 316 PHE A CZ 40 N N . SER A 6 ? 0.0563 0.0602 0.0470 -0.0037 -0.0059 -0.0046 317 SER A N 41 C CA A SER A 6 ? 0.0648 0.0726 0.0562 -0.0045 -0.0052 -0.0022 317 SER A CA 42 C CA B SER A 6 ? 0.0622 0.0701 0.0536 -0.0045 -0.0052 -0.0022 317 SER A CA 43 C C . SER A 6 ? 0.0698 0.0856 0.0613 -0.0035 -0.0064 -0.0038 317 SER A C 44 O O . SER A 6 ? 0.1031 0.1204 0.0953 -0.0019 -0.0081 -0.0074 317 SER A O 45 C CB A SER A 6 ? 0.0830 0.0870 0.0756 -0.0045 -0.0045 0.0004 317 SER A CB 46 C CB B SER A 6 ? 0.0887 0.0927 0.0813 -0.0047 -0.0044 0.0006 317 SER A CB 47 O OG A SER A 6 ? 0.0779 0.0763 0.0716 -0.0055 -0.0033 0.0011 317 SER A OG 48 O OG B SER A 6 ? 0.0878 0.0909 0.0806 -0.0029 -0.0052 -0.0003 317 SER A OG 49 O OXT A SER A 6 ? 0.0727 0.0943 0.0642 -0.0043 -0.0060 -0.0017 317 SER A OXT 50 O OXT B SER A 6 ? 0.0711 0.0926 0.0626 -0.0043 -0.0060 -0.0016 317 SER A OXT # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 312 1 ASN ASN A . n A 1 2 PHE 2 313 2 PHE PHE A . n A 1 3 GLY 3 314 3 GLY GLY A . n A 1 4 ALA 4 315 4 ALA ALA A . n A 1 5 PHE 5 316 5 PHE PHE A . n A 1 6 SER 6 317 6 SER SER A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentadecameric _pdbx_struct_assembly.oligomeric_count 15 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_535 x,y-2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -9.7000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 1_545 x,y-1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -4.8500000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4.8500000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5 'crystal symmetry operation' 1_575 x,y+2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 9.7000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 6 'crystal symmetry operation' 4_455 x-1/2,-y+1/2,-z 1.0000000000 0.0000000000 0.0000000000 -6.9100000000 0.0000000000 -1.0000000000 0.0000000000 2.4250000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 7 'crystal symmetry operation' 4_445 x-1/2,-y-1/2,-z 1.0000000000 0.0000000000 0.0000000000 -6.9100000000 0.0000000000 -1.0000000000 0.0000000000 -2.4250000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 8 'crystal symmetry operation' 4_435 x-1/2,-y-3/2,-z 1.0000000000 0.0000000000 0.0000000000 -6.9100000000 0.0000000000 -1.0000000000 0.0000000000 -7.2750000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 9 'crystal symmetry operation' 4_465 x-1/2,-y+3/2,-z 1.0000000000 0.0000000000 0.0000000000 -6.9100000000 0.0000000000 -1.0000000000 0.0000000000 7.2750000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 10 'crystal symmetry operation' 4_425 x-1/2,-y-5/2,-z 1.0000000000 0.0000000000 0.0000000000 -6.9100000000 0.0000000000 -1.0000000000 0.0000000000 -12.1250000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 11 'crystal symmetry operation' 4_555 x+1/2,-y+1/2,-z 1.0000000000 0.0000000000 0.0000000000 6.9100000000 0.0000000000 -1.0000000000 0.0000000000 2.4250000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 12 'crystal symmetry operation' 4_545 x+1/2,-y-1/2,-z 1.0000000000 0.0000000000 0.0000000000 6.9100000000 0.0000000000 -1.0000000000 0.0000000000 -2.4250000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 13 'crystal symmetry operation' 4_535 x+1/2,-y-3/2,-z 1.0000000000 0.0000000000 0.0000000000 6.9100000000 0.0000000000 -1.0000000000 0.0000000000 -7.2750000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 14 'crystal symmetry operation' 4_565 x+1/2,-y+3/2,-z 1.0000000000 0.0000000000 0.0000000000 6.9100000000 0.0000000000 -1.0000000000 0.0000000000 7.2750000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 15 'crystal symmetry operation' 4_525 x+1/2,-y-5/2,-z 1.0000000000 0.0000000000 0.0000000000 6.9100000000 0.0000000000 -1.0000000000 0.0000000000 -12.1250000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-04-25 2 'Structure model' 1 1 2018-05-30 3 'Structure model' 1 2 2018-06-06 4 'Structure model' 1 3 2018-06-20 5 'Structure model' 1 4 2019-12-18 6 'Structure model' 1 5 2023-10-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 5 'Structure model' 'Author supporting evidence' 8 6 'Structure model' 'Data collection' 9 6 'Structure model' 'Database references' 10 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 3 'Structure model' citation_author 5 4 'Structure model' citation 6 5 'Structure model' pdbx_audit_support 7 6 'Structure model' chem_comp_atom 8 6 'Structure model' chem_comp_bond 9 6 'Structure model' database_2 10 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.pdbx_database_id_DOI' 6 2 'Structure model' '_citation.title' 7 2 'Structure model' '_citation.year' 8 3 'Structure model' '_citation.journal_abbrev' 9 3 'Structure model' '_citation.pdbx_database_id_PubMed' 10 3 'Structure model' '_citation.title' 11 3 'Structure model' '_citation_author.name' 12 4 'Structure model' '_citation.journal_volume' 13 4 'Structure model' '_citation.page_first' 14 4 'Structure model' '_citation.page_last' 15 5 'Structure model' '_pdbx_audit_support.funding_organization' 16 6 'Structure model' '_database_2.pdbx_DOI' 17 6 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -2.6945 _pdbx_refine_tls.origin_y -1.2041 _pdbx_refine_tls.origin_z 6.5345 _pdbx_refine_tls.T[1][1] 0.0432 _pdbx_refine_tls.T[2][2] 0.0386 _pdbx_refine_tls.T[3][3] 0.0370 _pdbx_refine_tls.T[1][2] -0.0009 _pdbx_refine_tls.T[1][3] -0.0058 _pdbx_refine_tls.T[2][3] -0.0010 _pdbx_refine_tls.L[1][1] 1.3674 _pdbx_refine_tls.L[2][2] 0.2267 _pdbx_refine_tls.L[3][3] 0.1474 _pdbx_refine_tls.L[1][2] 0.1206 _pdbx_refine_tls.L[1][3] 0.4301 _pdbx_refine_tls.L[2][3] 0.0880 _pdbx_refine_tls.S[1][1] -0.0345 _pdbx_refine_tls.S[2][2] -0.0109 _pdbx_refine_tls.S[3][3] 0.0244 _pdbx_refine_tls.S[1][2] -0.0637 _pdbx_refine_tls.S[1][3] -0.0130 _pdbx_refine_tls.S[2][3] -0.0264 _pdbx_refine_tls.S[2][1] -0.0156 _pdbx_refine_tls.S[3][1] 0.0245 _pdbx_refine_tls.S[3][2] -0.0569 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id Z _pdbx_refine_tls_group.beg_auth_seq_id 1 _pdbx_refine_tls_group.end_auth_asym_id Z _pdbx_refine_tls_group.end_auth_seq_id 6 _pdbx_refine_tls_group.selection_details all _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? # _phasing.method MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 1 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 2 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? dev_1555 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.22 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 GLY N N N N 31 GLY CA C N N 32 GLY C C N N 33 GLY O O N N 34 GLY OXT O N N 35 GLY H H N N 36 GLY H2 H N N 37 GLY HA2 H N N 38 GLY HA3 H N N 39 GLY HXT H N N 40 PHE N N N N 41 PHE CA C N S 42 PHE C C N N 43 PHE O O N N 44 PHE CB C N N 45 PHE CG C Y N 46 PHE CD1 C Y N 47 PHE CD2 C Y N 48 PHE CE1 C Y N 49 PHE CE2 C Y N 50 PHE CZ C Y N 51 PHE OXT O N N 52 PHE H H N N 53 PHE H2 H N N 54 PHE HA H N N 55 PHE HB2 H N N 56 PHE HB3 H N N 57 PHE HD1 H N N 58 PHE HD2 H N N 59 PHE HE1 H N N 60 PHE HE2 H N N 61 PHE HZ H N N 62 PHE HXT H N N 63 SER N N N N 64 SER CA C N S 65 SER C C N N 66 SER O O N N 67 SER CB C N N 68 SER OG O N N 69 SER OXT O N N 70 SER H H N N 71 SER H2 H N N 72 SER HA H N N 73 SER HB2 H N N 74 SER HB3 H N N 75 SER HG H N N 76 SER HXT H N N 77 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 GLY N CA sing N N 29 GLY N H sing N N 30 GLY N H2 sing N N 31 GLY CA C sing N N 32 GLY CA HA2 sing N N 33 GLY CA HA3 sing N N 34 GLY C O doub N N 35 GLY C OXT sing N N 36 GLY OXT HXT sing N N 37 PHE N CA sing N N 38 PHE N H sing N N 39 PHE N H2 sing N N 40 PHE CA C sing N N 41 PHE CA CB sing N N 42 PHE CA HA sing N N 43 PHE C O doub N N 44 PHE C OXT sing N N 45 PHE CB CG sing N N 46 PHE CB HB2 sing N N 47 PHE CB HB3 sing N N 48 PHE CG CD1 doub Y N 49 PHE CG CD2 sing Y N 50 PHE CD1 CE1 sing Y N 51 PHE CD1 HD1 sing N N 52 PHE CD2 CE2 doub Y N 53 PHE CD2 HD2 sing N N 54 PHE CE1 CZ doub Y N 55 PHE CE1 HE1 sing N N 56 PHE CE2 CZ sing Y N 57 PHE CE2 HE2 sing N N 58 PHE CZ HZ sing N N 59 PHE OXT HXT sing N N 60 SER N CA sing N N 61 SER N H sing N N 62 SER N H2 sing N N 63 SER CA C sing N N 64 SER CA CB sing N N 65 SER CA HA sing N N 66 SER C O doub N N 67 SER C OXT sing N N 68 SER CB OG sing N N 69 SER CB HB2 sing N N 70 SER CB HB3 sing N N 71 SER OG HG sing N N 72 SER OXT HXT sing N N 73 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute on Aging (NIH/NIA)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 'NIH NIA AG029430' _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3DGJ _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #