data_6C88 # _entry.id 6C88 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6C88 pdb_00006c88 10.2210/pdb6c88/pdb WWPDB D_1000232265 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-04-18 2 'Structure model' 1 1 2018-07-18 3 'Structure model' 1 2 2018-08-01 4 'Structure model' 1 3 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation 3 3 'Structure model' citation_author 4 3 'Structure model' pdbx_related_exp_data_set 5 4 'Structure model' chem_comp_atom 6 4 'Structure model' chem_comp_bond 7 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.title' 5 4 'Structure model' '_database_2.pdbx_DOI' 6 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6C88 _pdbx_database_status.recvd_initial_deposition_date 2018-01-24 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 6C3F unspecified PDB . 6C3G unspecified PDB . 6C3S unspecified PDB . 6C3T unspecified PDB . 6C4O unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Saelices, L.' 1 0000-0002-1904-2150 'Sawaya, M.R.' 2 0000-0003-0874-9043 'Eisenberg, D.S.' 3 0000-0003-2432-5419 # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.unpublished_flag ? ? ? ? ? ? ? US ? ? primary 'Protein Sci.' PRCIEI 0795 1469-896X ? ? 27 ? 1295 1303 'Crystal structures of amyloidogenic segments of human transthyretin.' 2018 ? 10.1002/pro.3420 29626847 ? ? ? ? ? ? ? ? US ? ? 1 'J. Biol. Chem.' JBCHA3 0071 1083-351X ? ? 290 ? 28932 28943 'Uncovering the Mechanism of Aggregation of Human Transthyretin.' 2015 ? 10.1074/jbc.M115.659912 26459562 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Saelices, L.' 1 ? primary 'Sievers, S.A.' 2 ? primary 'Sawaya, M.R.' 3 ? primary 'Eisenberg, D.S.' 4 ? 1 'Saelices, L.' 5 ? 1 'Johnson, L.M.' 6 ? 1 'Liang, W.Y.' 7 ? 1 'Sawaya, M.R.' 8 ? 1 'Cascio, D.' 9 ? 1 'Ruchala, P.' 10 ? 1 'Whitelegge, J.' 11 ? 1 'Jiang, L.' 12 ? 1 'Riek, R.' 13 ? 1 'Eisenberg, D.S.' 14 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn VAL-ALA-VAL-HIS-VAL-PHE 671.806 2 ? ? ? ? 2 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 3 water nat water 18.015 4 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code VAVHVF _entity_poly.pdbx_seq_one_letter_code_can VAVHVF _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 ALA n 1 3 VAL n 1 4 HIS n 1 5 VAL n 1 6 PHE n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 6 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 1 1 VAL VAL A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 HIS 4 4 4 HIS HIS A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 PHE 6 6 6 PHE PHE A . n B 1 1 VAL 1 1 1 VAL VAL B . n B 1 2 ALA 2 2 2 ALA ALA B . n B 1 3 VAL 3 3 3 VAL VAL B . n B 1 4 HIS 4 4 4 HIS HIS B . n B 1 5 VAL 5 5 5 VAL VAL B . n B 1 6 PHE 6 6 6 PHE PHE B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL 1 101 1 GOL GOL B . D 3 HOH 1 101 1 HOH HOH A . E 3 HOH 1 201 5 HOH HOH B . E 3 HOH 2 202 4 HOH HOH B . E 3 HOH 3 203 2 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALEPACK ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.12_2829 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? DENZO ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6C88 _cell.details ? _cell.formula_units_Z ? _cell.length_a 11.529 _cell.length_a_esd ? _cell.length_b 20.360 _cell.length_b_esd ? _cell.length_c 36.729 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C88 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6C88 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.6 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 23.32 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;10mg/ml peptide solution. Reservoir contained 0.2 M Magnesium chloride hexahydrate, 0.1 M HEPES sodium pH 7.5, 30% v/v 2-Propanol. Crystals were soaked in 25% glycerol prior to diffraction ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-02-27 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 4.010 _reflns.entry_id 6C88 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.850 _reflns.d_resolution_low 100.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 744 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 84.300 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.800 _reflns.pdbx_Rmerge_I_obs 0.280 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 3.100 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.107 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 2837 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.850 1.920 ? ? ? ? ? ? 71 78.900 ? ? ? ? 0.421 ? ? ? ? ? ? ? ? 2.600 ? 1.093 ? ? ? ? ? 1 1 ? ? 1.920 1.990 ? ? ? ? ? ? 57 78.100 ? ? ? ? 0.572 ? ? ? ? ? ? ? ? 4.300 ? 1.238 ? ? ? ? ? 2 1 ? ? 1.990 2.080 ? ? ? ? ? ? 66 78.600 ? ? ? ? 0.507 ? ? ? ? ? ? ? ? 4.300 ? 1.143 ? ? ? ? ? 3 1 ? ? 2.080 2.190 ? ? ? ? ? ? 67 80.700 ? ? ? ? 0.406 ? ? ? ? ? ? ? ? 3.800 ? 0.934 ? ? ? ? ? 4 1 ? ? 2.190 2.330 ? ? ? ? ? ? 67 72.000 ? ? ? ? 0.411 ? ? ? ? ? ? ? ? 4.000 ? 0.949 ? ? ? ? ? 5 1 ? ? 2.330 2.510 ? ? ? ? ? ? 65 83.300 ? ? ? ? 0.396 ? ? ? ? ? ? ? ? 4.000 ? 0.997 ? ? ? ? ? 6 1 ? ? 2.510 2.760 ? ? ? ? ? ? 81 95.300 ? ? ? ? 0.399 ? ? ? ? ? ? ? ? 4.100 ? 1.124 ? ? ? ? ? 7 1 ? ? 2.760 3.160 ? ? ? ? ? ? 83 92.200 ? ? ? ? 0.382 ? ? ? ? ? ? ? ? 4.000 ? 1.185 ? ? ? ? ? 8 1 ? ? 3.160 3.990 ? ? ? ? ? ? 92 91.100 ? ? ? ? 0.161 ? ? ? ? ? ? ? ? 3.700 ? 1.061 ? ? ? ? ? 9 1 ? ? 3.990 100.000 ? ? ? ? ? ? 95 89.600 ? ? ? ? 0.089 ? ? ? ? ? ? ? ? 3.500 ? 1.286 ? ? ? ? ? 10 1 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 23.470 _refine.B_iso_mean 3.7137 _refine.B_iso_min 0.340 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6C88 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.8510 _refine.ls_d_res_low 18.3650 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 728 _refine.ls_number_reflns_R_free 57 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 84.4500 _refine.ls_percent_reflns_R_free 7.8300 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1723 _refine.ls_R_factor_R_free 0.1785 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1706 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.370 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 12.0100 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2200 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.8510 _refine_hist.d_res_low 18.3650 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 4 _refine_hist.number_atoms_total 106 _refine_hist.pdbx_number_residues_total 12 _refine_hist.pdbx_B_iso_mean_ligand 15.47 _refine_hist.pdbx_B_iso_mean_solvent 6.71 _refine_hist.pdbx_number_atoms_protein 96 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.009 ? 103 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.827 ? 139 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.067 ? 18 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.003 ? 16 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 10.927 ? 52 ? f_dihedral_angle_d ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.8506 _refine_ls_shell.d_res_low 1.917 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 70 _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.percent_reflns_obs 79.55 _refine_ls_shell.percent_reflns_R_free 8 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.4292 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.1898 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 1 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6C88 _struct.title 'STRUCTURE OF THE AMYLOID FORMING PEPTIDE VAVHVF FROM TRANSTHYRETIN' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6C88 _struct_keywords.text 'amyloid, transthyretin, fibril, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6C88 _struct_ref.pdbx_db_accession 6C88 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6C88 A 1 ? 6 ? 6C88 1 ? 6 ? 1 6 2 1 6C88 B 1 ? 6 ? 6C88 1 ? 6 ? 1 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'scanning transmission electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_455 x-1,y,z 1.0000000000 0.0000000000 0.0000000000 -11.5290000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 1_655 x+1,y,z 1.0000000000 0.0000000000 0.0000000000 11.5290000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 1_355 x-2,y,z 1.0000000000 0.0000000000 0.0000000000 -23.0580000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5 'crystal symmetry operation' 1_755 x+2,y,z 1.0000000000 0.0000000000 0.0000000000 23.0580000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 6 'crystal symmetry operation' 4_545 x+1/2,-y-1/2,-z 1.0000000000 0.0000000000 0.0000000000 5.7645000000 0.0000000000 -1.0000000000 0.0000000000 -10.1800000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 7 'crystal symmetry operation' 4_445 x-1/2,-y-1/2,-z 1.0000000000 0.0000000000 0.0000000000 -5.7645000000 0.0000000000 -1.0000000000 0.0000000000 -10.1800000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 8 'crystal symmetry operation' 4_645 x+3/2,-y-1/2,-z 1.0000000000 0.0000000000 0.0000000000 17.2935000000 0.0000000000 -1.0000000000 0.0000000000 -10.1800000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 9 'crystal symmetry operation' 4_345 x-3/2,-y-1/2,-z 1.0000000000 0.0000000000 0.0000000000 -17.2935000000 0.0000000000 -1.0000000000 0.0000000000 -10.1800000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 10 'crystal symmetry operation' 4_745 x+5/2,-y-1/2,-z 1.0000000000 0.0000000000 0.0000000000 28.8225000000 0.0000000000 -1.0000000000 0.0000000000 -10.1800000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ALA A 2 ? VAL A 5 ? ALA A 2 VAL A 5 AA1 2 VAL B 3 ? PHE B 6 ? VAL B 3 PHE B 6 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id ALA _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 2 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id ALA _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 2 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id PHE _pdbx_struct_sheet_hbond.range_2_label_asym_id B _pdbx_struct_sheet_hbond.range_2_label_seq_id 6 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id PHE _pdbx_struct_sheet_hbond.range_2_auth_asym_id B _pdbx_struct_sheet_hbond.range_2_auth_seq_id 6 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id GOL _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 7 _struct_site.details 'binding site for residue GOL B 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 HIS A 4 ? HIS A 4 . ? 1_455 ? 2 AC1 7 VAL A 5 ? VAL A 5 . ? 3_355 ? 3 AC1 7 VAL B 1 ? VAL B 1 . ? 1_555 ? 4 AC1 7 VAL B 1 ? VAL B 1 . ? 3_355 ? 5 AC1 7 VAL B 3 ? VAL B 3 . ? 3_355 ? 6 AC1 7 PHE B 6 ? PHE B 6 . ? 2_355 ? 7 AC1 7 HOH E . ? HOH B 202 . ? 1_555 ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 GOL C1 C N N 14 GOL O1 O N N 15 GOL C2 C N N 16 GOL O2 O N N 17 GOL C3 C N N 18 GOL O3 O N N 19 GOL H11 H N N 20 GOL H12 H N N 21 GOL HO1 H N N 22 GOL H2 H N N 23 GOL HO2 H N N 24 GOL H31 H N N 25 GOL H32 H N N 26 GOL HO3 H N N 27 HIS N N N N 28 HIS CA C N S 29 HIS C C N N 30 HIS O O N N 31 HIS CB C N N 32 HIS CG C Y N 33 HIS ND1 N Y N 34 HIS CD2 C Y N 35 HIS CE1 C Y N 36 HIS NE2 N Y N 37 HIS OXT O N N 38 HIS H H N N 39 HIS H2 H N N 40 HIS HA H N N 41 HIS HB2 H N N 42 HIS HB3 H N N 43 HIS HD1 H N N 44 HIS HD2 H N N 45 HIS HE1 H N N 46 HIS HE2 H N N 47 HIS HXT H N N 48 HOH O O N N 49 HOH H1 H N N 50 HOH H2 H N N 51 PHE N N N N 52 PHE CA C N S 53 PHE C C N N 54 PHE O O N N 55 PHE CB C N N 56 PHE CG C Y N 57 PHE CD1 C Y N 58 PHE CD2 C Y N 59 PHE CE1 C Y N 60 PHE CE2 C Y N 61 PHE CZ C Y N 62 PHE OXT O N N 63 PHE H H N N 64 PHE H2 H N N 65 PHE HA H N N 66 PHE HB2 H N N 67 PHE HB3 H N N 68 PHE HD1 H N N 69 PHE HD2 H N N 70 PHE HE1 H N N 71 PHE HE2 H N N 72 PHE HZ H N N 73 PHE HXT H N N 74 VAL N N N N 75 VAL CA C N S 76 VAL C C N N 77 VAL O O N N 78 VAL CB C N N 79 VAL CG1 C N N 80 VAL CG2 C N N 81 VAL OXT O N N 82 VAL H H N N 83 VAL H2 H N N 84 VAL HA H N N 85 VAL HB H N N 86 VAL HG11 H N N 87 VAL HG12 H N N 88 VAL HG13 H N N 89 VAL HG21 H N N 90 VAL HG22 H N N 91 VAL HG23 H N N 92 VAL HXT H N N 93 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 GOL C1 O1 sing N N 13 GOL C1 C2 sing N N 14 GOL C1 H11 sing N N 15 GOL C1 H12 sing N N 16 GOL O1 HO1 sing N N 17 GOL C2 O2 sing N N 18 GOL C2 C3 sing N N 19 GOL C2 H2 sing N N 20 GOL O2 HO2 sing N N 21 GOL C3 O3 sing N N 22 GOL C3 H31 sing N N 23 GOL C3 H32 sing N N 24 GOL O3 HO3 sing N N 25 HIS N CA sing N N 26 HIS N H sing N N 27 HIS N H2 sing N N 28 HIS CA C sing N N 29 HIS CA CB sing N N 30 HIS CA HA sing N N 31 HIS C O doub N N 32 HIS C OXT sing N N 33 HIS CB CG sing N N 34 HIS CB HB2 sing N N 35 HIS CB HB3 sing N N 36 HIS CG ND1 sing Y N 37 HIS CG CD2 doub Y N 38 HIS ND1 CE1 doub Y N 39 HIS ND1 HD1 sing N N 40 HIS CD2 NE2 sing Y N 41 HIS CD2 HD2 sing N N 42 HIS CE1 NE2 sing Y N 43 HIS CE1 HE1 sing N N 44 HIS NE2 HE2 sing N N 45 HIS OXT HXT sing N N 46 HOH O H1 sing N N 47 HOH O H2 sing N N 48 PHE N CA sing N N 49 PHE N H sing N N 50 PHE N H2 sing N N 51 PHE CA C sing N N 52 PHE CA CB sing N N 53 PHE CA HA sing N N 54 PHE C O doub N N 55 PHE C OXT sing N N 56 PHE CB CG sing N N 57 PHE CB HB2 sing N N 58 PHE CB HB3 sing N N 59 PHE CG CD1 doub Y N 60 PHE CG CD2 sing Y N 61 PHE CD1 CE1 sing Y N 62 PHE CD1 HD1 sing N N 63 PHE CD2 CE2 doub Y N 64 PHE CD2 HD2 sing N N 65 PHE CE1 CZ doub Y N 66 PHE CE1 HE1 sing N N 67 PHE CE2 CZ sing Y N 68 PHE CE2 HE2 sing N N 69 PHE CZ HZ sing N N 70 PHE OXT HXT sing N N 71 VAL N CA sing N N 72 VAL N H sing N N 73 VAL N H2 sing N N 74 VAL CA C sing N N 75 VAL CA CB sing N N 76 VAL CA HA sing N N 77 VAL C O doub N N 78 VAL C OXT sing N N 79 VAL CB CG1 sing N N 80 VAL CB CG2 sing N N 81 VAL CB HB sing N N 82 VAL CG1 HG11 sing N N 83 VAL CG1 HG12 sing N N 84 VAL CG1 HG13 sing N N 85 VAL CG2 HG21 sing N N 86 VAL CG2 HG22 sing N N 87 VAL CG2 HG23 sing N N 88 VAL OXT HXT sing N N 89 # _pdbx_audit_support.funding_organization 'Seventh Framework Programme for Research' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 298559 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 6C88 _atom_sites.fract_transf_matrix[1][1] 0.086738 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.049116 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.027226 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 N N . VAL A 1 1 ? 2.755 1.097 -3.675 1.00 3.85 ? 1 VAL A N 1 ATOM 2 C CA . VAL A 1 1 ? 1.548 0.441 -3.186 1.00 2.53 ? 1 VAL A CA 1 ATOM 3 C C . VAL A 1 1 ? 1.493 0.476 -1.657 1.00 3.92 ? 1 VAL A C 1 ATOM 4 O O . VAL A 1 1 ? 2.493 0.233 -0.978 1.00 2.27 ? 1 VAL A O 1 ATOM 5 C CB . VAL A 1 1 ? 1.448 -1.022 -3.679 1.00 4.66 ? 1 VAL A CB 1 ATOM 6 C CG1 . VAL A 1 1 ? 2.640 -1.838 -3.218 1.00 6.26 ? 1 VAL A CG1 1 ATOM 7 C CG2 . VAL A 1 1 ? 0.139 -1.660 -3.220 1.00 6.52 ? 1 VAL A CG2 1 ATOM 8 N N . ALA A 1 2 ? 0.321 0.814 -1.131 1.00 1.61 ? 2 ALA A N 1 ATOM 9 C CA . ALA A 1 2 ? 0.101 0.873 0.299 1.00 0.74 ? 2 ALA A CA 1 ATOM 10 C C . ALA A 1 2 ? -1.094 0.020 0.635 1.00 2.09 ? 2 ALA A C 1 ATOM 11 O O . ALA A 1 2 ? -2.172 0.223 0.080 1.00 1.82 ? 2 ALA A O 1 ATOM 12 C CB . ALA A 1 2 ? -0.120 2.297 0.755 1.00 3.02 ? 2 ALA A CB 1 ATOM 13 N N . VAL A 1 3 ? -0.888 -0.937 1.536 1.00 2.04 ? 3 VAL A N 1 ATOM 14 C CA . VAL A 1 3 ? -1.944 -1.824 2.003 1.00 0.34 ? 3 VAL A CA 1 ATOM 15 C C . VAL A 1 3 ? -2.148 -1.595 3.498 1.00 1.98 ? 3 VAL A C 1 ATOM 16 O O . VAL A 1 3 ? -1.255 -1.865 4.289 1.00 1.61 ? 3 VAL A O 1 ATOM 17 C CB . VAL A 1 3 ? -1.599 -3.298 1.723 1.00 0.75 ? 3 VAL A CB 1 ATOM 18 C CG1 . VAL A 1 3 ? -2.675 -4.228 2.272 1.00 0.71 ? 3 VAL A CG1 1 ATOM 19 C CG2 . VAL A 1 3 ? -1.422 -3.513 0.217 1.00 0.71 ? 3 VAL A CG2 1 ATOM 20 N N . HIS A 1 4 ? -3.313 -1.075 3.870 1.00 1.25 ? 4 HIS A N 1 ATOM 21 C CA . HIS A 1 4 ? -3.614 -0.828 5.274 1.00 2.29 ? 4 HIS A CA 1 ATOM 22 C C . HIS A 1 4 ? -4.742 -1.739 5.757 1.00 2.73 ? 4 HIS A C 1 ATOM 23 O O . HIS A 1 4 ? -5.754 -1.898 5.079 1.00 1.62 ? 4 HIS A O 1 ATOM 24 C CB . HIS A 1 4 ? -4.003 0.635 5.498 1.00 3.72 ? 4 HIS A CB 1 ATOM 25 C CG . HIS A 1 4 ? -2.909 1.609 5.192 1.00 3.57 ? 4 HIS A CG 1 ATOM 26 N ND1 . HIS A 1 4 ? -3.148 2.951 4.997 1.00 2.47 ? 4 HIS A ND1 1 ATOM 27 C CD2 . HIS A 1 4 ? -1.572 1.438 5.049 1.00 2.42 ? 4 HIS A CD2 1 ATOM 28 C CE1 . HIS A 1 4 ? -2.006 3.566 4.740 1.00 5.23 ? 4 HIS A CE1 1 ATOM 29 N NE2 . HIS A 1 4 ? -1.034 2.672 4.777 1.00 1.84 ? 4 HIS A NE2 1 ATOM 30 N N . VAL A 1 5 ? -4.543 -2.341 6.925 1.00 1.09 ? 5 VAL A N 1 ATOM 31 C CA . VAL A 1 5 ? -5.577 -3.111 7.599 1.00 1.60 ? 5 VAL A CA 1 ATOM 32 C C . VAL A 1 5 ? -5.687 -2.596 9.040 1.00 1.54 ? 5 VAL A C 1 ATOM 33 O O . VAL A 1 5 ? -4.738 -2.692 9.820 1.00 1.84 ? 5 VAL A O 1 ATOM 34 C CB . VAL A 1 5 ? -5.273 -4.625 7.593 1.00 1.51 ? 5 VAL A CB 1 ATOM 35 C CG1 . VAL A 1 5 ? -6.366 -5.382 8.309 1.00 2.50 ? 5 VAL A CG1 1 ATOM 36 C CG2 . VAL A 1 5 ? -5.115 -5.144 6.162 1.00 3.81 ? 5 VAL A CG2 1 ATOM 37 N N . PHE A 1 6 ? -6.829 -2.009 9.378 1.00 2.87 ? 6 PHE A N 1 ATOM 38 C CA . PHE A 1 6 ? -7.010 -1.445 10.711 1.00 3.91 ? 6 PHE A CA 1 ATOM 39 C C . PHE A 1 6 ? -8.482 -1.365 11.113 1.00 4.80 ? 6 PHE A C 1 ATOM 40 O O . PHE A 1 6 ? -9.349 -1.900 10.429 1.00 3.09 ? 6 PHE A O 1 ATOM 41 C CB . PHE A 1 6 ? -6.369 -0.059 10.797 1.00 2.45 ? 6 PHE A CB 1 ATOM 42 C CG . PHE A 1 6 ? -6.986 0.955 9.891 1.00 2.53 ? 6 PHE A CG 1 ATOM 43 C CD1 . PHE A 1 6 ? -6.532 1.110 8.590 1.00 4.00 ? 6 PHE A CD1 1 ATOM 44 C CD2 . PHE A 1 6 ? -8.001 1.775 10.343 1.00 2.94 ? 6 PHE A CD2 1 ATOM 45 C CE1 . PHE A 1 6 ? -7.088 2.047 7.757 1.00 3.91 ? 6 PHE A CE1 1 ATOM 46 C CE2 . PHE A 1 6 ? -8.562 2.716 9.516 1.00 2.55 ? 6 PHE A CE2 1 ATOM 47 C CZ . PHE A 1 6 ? -8.106 2.853 8.215 1.00 6.39 ? 6 PHE A CZ 1 ATOM 48 O OXT . PHE A 1 6 ? -8.833 -0.765 12.134 1.00 3.71 ? 6 PHE A OXT 1 ATOM 49 N N . VAL B 1 1 ? -13.748 -1.981 10.941 1.00 3.29 ? 1 VAL B N 1 ATOM 50 C CA . VAL B 1 1 ? -12.581 -2.563 10.295 1.00 1.86 ? 1 VAL B CA 1 ATOM 51 C C . VAL B 1 1 ? -12.475 -2.025 8.876 1.00 4.85 ? 1 VAL B C 1 ATOM 52 O O . VAL B 1 1 ? -13.470 -1.945 8.157 1.00 2.52 ? 1 VAL B O 1 ATOM 53 C CB . VAL B 1 1 ? -12.656 -4.100 10.305 1.00 3.69 ? 1 VAL B CB 1 ATOM 54 C CG1 . VAL B 1 1 ? -11.749 -4.706 9.263 1.00 5.05 ? 1 VAL B CG1 1 ATOM 55 C CG2 . VAL B 1 1 ? -12.307 -4.622 11.694 1.00 4.64 ? 1 VAL B CG2 1 ATOM 56 N N . ALA B 1 2 ? -11.271 -1.621 8.498 1.00 4.08 ? 2 ALA B N 1 ATOM 57 C CA . ALA B 1 2 ? -11.038 -1.015 7.203 1.00 3.14 ? 2 ALA B CA 1 ATOM 58 C C . ALA B 1 2 ? -9.861 -1.672 6.512 1.00 2.46 ? 2 ALA B C 1 ATOM 59 O O . ALA B 1 2 ? -8.825 -1.913 7.139 1.00 1.12 ? 2 ALA B O 1 ATOM 60 C CB . ALA B 1 2 ? -10.793 0.460 7.350 1.00 3.64 ? 2 ALA B CB 1 ATOM 61 N N . VAL B 1 3 ? -10.030 -1.965 5.220 1.00 2.21 ? 3 VAL B N 1 ATOM 62 C CA . VAL B 1 3 ? -8.929 -2.413 4.383 1.00 1.54 ? 3 VAL B CA 1 ATOM 63 C C . VAL B 1 3 ? -8.793 -1.476 3.185 1.00 2.07 ? 3 VAL B C 1 ATOM 64 O O . VAL B 1 3 ? -9.752 -1.241 2.449 1.00 0.80 ? 3 VAL B O 1 ATOM 65 C CB . VAL B 1 3 ? -9.120 -3.865 3.889 1.00 2.59 ? 3 VAL B CB 1 ATOM 66 C CG1 . VAL B 1 3 ? -7.927 -4.307 3.029 1.00 1.99 ? 3 VAL B CG1 1 ATOM 67 C CG2 . VAL B 1 3 ? -9.301 -4.810 5.061 1.00 1.83 ? 3 VAL B CG2 1 ATOM 68 N N . HIS B 1 4 ? -7.592 -0.930 3.019 1.00 1.70 ? 4 HIS B N 1 ATOM 69 C CA . HIS B 1 4 ? -7.287 -0.036 1.918 1.00 0.88 ? 4 HIS B CA 1 ATOM 70 C C . HIS B 1 4 ? -6.164 -0.598 1.077 1.00 1.46 ? 4 HIS B C 1 ATOM 71 O O . HIS B 1 4 ? -5.173 -1.121 1.601 1.00 1.50 ? 4 HIS B O 1 ATOM 72 C CB . HIS B 1 4 ? -6.873 1.340 2.421 1.00 2.40 ? 4 HIS B CB 1 ATOM 73 C CG . HIS B 1 4 ? -7.937 2.057 3.181 1.00 1.91 ? 4 HIS B CG 1 ATOM 74 N ND1 . HIS B 1 4 ? -7.671 3.150 3.973 1.00 3.48 ? 4 HIS B ND1 1 ATOM 75 C CD2 . HIS B 1 4 ? -9.270 1.847 3.264 1.00 0.89 ? 4 HIS B CD2 1 ATOM 76 C CE1 . HIS B 1 4 ? -8.794 3.582 4.516 1.00 2.53 ? 4 HIS B CE1 1 ATOM 77 N NE2 . HIS B 1 4 ? -9.779 2.806 4.107 1.00 2.30 ? 4 HIS B NE2 1 ATOM 78 N N . VAL B 1 5 ? -6.311 -0.467 -0.232 1.00 1.91 ? 5 VAL B N 1 ATOM 79 C CA . VAL B 1 5 ? -5.215 -0.714 -1.147 1.00 1.46 ? 5 VAL B CA 1 ATOM 80 C C . VAL B 1 5 ? -5.157 0.448 -2.140 1.00 2.21 ? 5 VAL B C 1 ATOM 81 O O . VAL B 1 5 ? -6.086 0.648 -2.918 1.00 1.66 ? 5 VAL B O 1 ATOM 82 C CB . VAL B 1 5 ? -5.374 -2.046 -1.911 1.00 1.51 ? 5 VAL B CB 1 ATOM 83 C CG1 . VAL B 1 5 ? -4.232 -2.210 -2.906 1.00 4.36 ? 5 VAL B CG1 1 ATOM 84 C CG2 . VAL B 1 5 ? -5.428 -3.227 -0.945 1.00 2.51 ? 5 VAL B CG2 1 ATOM 85 N N . PHE B 1 6 ? -4.070 1.211 -2.098 1.00 4.01 ? 6 PHE B N 1 ATOM 86 C CA . PHE B 1 6 ? -3.873 2.329 -3.009 1.00 3.25 ? 6 PHE B CA 1 ATOM 87 C C . PHE B 1 6 ? -2.537 2.222 -3.741 1.00 6.17 ? 6 PHE B C 1 ATOM 88 O O . PHE B 1 6 ? -1.551 1.768 -3.149 1.00 3.68 ? 6 PHE B O 1 ATOM 89 C CB . PHE B 1 6 ? -3.938 3.660 -2.246 1.00 3.12 ? 6 PHE B CB 1 ATOM 90 C CG . PHE B 1 6 ? -5.219 3.862 -1.494 1.00 3.83 ? 6 PHE B CG 1 ATOM 91 C CD1 . PHE B 1 6 ? -6.423 3.942 -2.169 1.00 4.26 ? 6 PHE B CD1 1 ATOM 92 C CD2 . PHE B 1 6 ? -5.220 3.987 -0.113 1.00 6.55 ? 6 PHE B CD2 1 ATOM 93 C CE1 . PHE B 1 6 ? -7.616 4.130 -1.481 1.00 5.71 ? 6 PHE B CE1 1 ATOM 94 C CE2 . PHE B 1 6 ? -6.412 4.176 0.582 1.00 5.48 ? 6 PHE B CE2 1 ATOM 95 C CZ . PHE B 1 6 ? -7.612 4.247 -0.111 1.00 5.58 ? 6 PHE B CZ 1 ATOM 96 O OXT . PHE B 1 6 ? -2.415 2.597 -4.923 1.00 2.66 ? 6 PHE B OXT 1 HETATM 97 C C1 . GOL C 2 . ? -12.937 1.145 10.700 1.00 7.85 ? 101 GOL B C1 1 HETATM 98 O O1 . GOL C 2 . ? -13.617 0.280 11.567 1.00 10.08 ? 101 GOL B O1 1 HETATM 99 C C2 . GOL C 2 . ? -13.860 2.320 10.505 1.00 19.69 ? 101 GOL B C2 1 HETATM 100 O O2 . GOL C 2 . ? -13.101 3.493 10.670 1.00 23.47 ? 101 GOL B O2 1 HETATM 101 C C3 . GOL C 2 . ? -14.468 2.223 9.111 1.00 9.90 ? 101 GOL B C3 1 HETATM 102 O O3 . GOL C 2 . ? -13.639 2.863 8.162 1.00 21.85 ? 101 GOL B O3 1 HETATM 103 O O . HOH D 3 . ? -5.284 4.544 4.835 1.00 6.70 ? 101 HOH A O 1 HETATM 104 O O . HOH E 3 . ? -1.039 4.089 -6.297 1.00 7.92 ? 201 HOH B O 1 HETATM 105 O O . HOH E 3 . ? -11.385 -0.365 12.766 1.00 4.30 ? 202 HOH B O 1 HETATM 106 O O . HOH E 3 . ? 0.846 3.696 -3.275 1.00 7.94 ? 203 HOH B O 1 #