data_6G8D # _entry.id 6G8D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6G8D pdb_00006g8d 10.2210/pdb6g8d/pdb WWPDB D_1200009571 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-04-24 2 'Structure model' 1 1 2019-10-02 3 'Structure model' 1 2 2019-10-23 4 'Structure model' 1 3 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_struct_assembly 2 3 'Structure model' citation 3 3 'Structure model' citation_author 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_struct_assembly.oligomeric_count' 2 2 'Structure model' '_pdbx_struct_assembly.oligomeric_details' 3 3 'Structure model' '_citation.country' 4 3 'Structure model' '_citation.journal_abbrev' 5 3 'Structure model' '_citation.journal_id_CSD' 6 3 'Structure model' '_citation.journal_id_ISSN' 7 3 'Structure model' '_citation.journal_volume' 8 3 'Structure model' '_citation.page_first' 9 3 'Structure model' '_citation.page_last' 10 3 'Structure model' '_citation.pdbx_database_id_DOI' 11 3 'Structure model' '_citation.pdbx_database_id_PubMed' 12 3 'Structure model' '_citation.title' 13 3 'Structure model' '_citation.year' 14 4 'Structure model' '_database_2.pdbx_DOI' 15 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6G8D _pdbx_database_status.recvd_initial_deposition_date 2018-04-08 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Landau, M.' 1 0000-0002-1743-3430 'Perov, S.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Plos Pathog.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1553-7374 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 15 _citation.language ? _citation.page_first e1007978 _citation.page_last e1007978 _citation.title ;Structural Insights into Curli CsgA Cross-beta Fibril Architecture Inspire Repurposing of Anti-amyloid Compounds as Anti-biofilm Agents. ; _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1371/journal.ppat.1007978 _citation.pdbx_database_id_PubMed 31469892 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Perov, S.' 1 ? primary 'Lidor, O.' 2 0000-0001-6392-4647 primary 'Salinas, N.' 3 0000-0002-3511-2243 primary 'Golan, N.' 4 0000-0001-5064-0776 primary 'Tayeb-Fligelman, E.' 5 ? primary 'Deshmukh, M.' 6 0000-0002-3704-3229 primary 'Willbold, D.' 7 0000-0002-0065-7366 primary 'Landau, M.' 8 0000-0002-1743-3430 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Major curlin subunit' 812.910 1 ? ? 'Amyloid spine segment LNIYQY from CsgA (residues 45-50) secreted by E. coli' ? 2 water nat water 18.015 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code LNIYQY _entity_poly.pdbx_seq_one_letter_code_can LNIYQY _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 ASN n 1 3 ILE n 1 4 TYR n 1 5 GLN n 1 6 TYR n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 6 _pdbx_entity_src_syn.organism_scientific 'Escherichia coli K-12' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 83333 _pdbx_entity_src_syn.details 'LNIYQY from CsgA, synthesized' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 1 1 LEU LEU A . n A 1 2 ASN 2 2 2 ASN ASN A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 TYR 4 4 4 TYR TYR A . n A 1 5 GLN 5 5 5 GLN GLN A . n A 1 6 TYR 6 6 6 TYR TYR A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id HOH _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id HOH _pdbx_nonpoly_scheme.auth_mon_id HOH _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? 'Wolfgang Kabsch' Wolfgang.Kabsch@mpimf-heidelberg.mpg.de ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/ ? XDS ? ? package . 1 ? 'data scaling' ? ? 'Wolfgang Kabsch' ? ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? XSCALE ? ? package . 2 ? phasing ? ? 'Randy J. Read' cimr-phaser@lists.cam.ac.uk ? ? ? ? ? http://www-structmed.cimr.cam.ac.uk/phaser/ ? PHASER ? ? program . 3 ? refinement ? ? 'Garib N. Murshudov' garib@ysbl.york.ac.uk ? ? ? ? Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html ? REFMAC ? ? program . 4 ? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Sep. 1, 2017' ? ? ? C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.24 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 126.010 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6G8D _cell.details ? _cell.formula_units_Z ? _cell.length_a 42.180 _cell.length_a_esd ? _cell.length_b 4.820 _cell.length_b_esd ? _cell.length_c 26.690 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G8D _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6G8D _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.35 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 8.88 _exptl_crystal.description Needle-like _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Reservoir contained 0.1 M HEPES pH 7.5, 20% v/v Jeffamine M-600, 10 mM of the TAIVVQ peptide' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M-F' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-05-02 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9763 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9763 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 'P14 (MX2)' _diffrn_source.pdbx_synchrotron_site 'PETRA III, EMBL c/o DESY' # _reflns.B_iso_Wilson_estimate 23.727 _reflns.entry_id 6G8D _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.850 _reflns.d_resolution_low 13.320 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 462 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 96.000 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.506 _reflns.pdbx_Rmerge_I_obs 0.189 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 3.460 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.747 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.225 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.975 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.850 2.070 ? 2.310 ? ? ? ? 127 98.400 ? ? ? ? 0.463 ? ? ? ? ? ? ? ? 4.181 ? ? ? ? 0.529 ? ? 1 1 0.891 ? 2.070 2.390 ? 3.090 ? ? ? ? 118 96.700 ? ? ? ? 0.318 ? ? ? ? ? ? ? ? 3.788 ? ? ? ? 0.367 ? ? 2 1 0.917 ? 2.390 2.930 ? 3.270 ? ? ? ? 83 93.300 ? ? ? ? 0.252 ? ? ? ? ? ? ? ? 3.313 ? ? ? ? 0.299 ? ? 3 1 0.956 ? 2.930 4.140 ? 5.380 ? ? ? ? 85 98.800 ? ? ? ? 0.147 ? ? ? ? ? ? ? ? 3.176 ? ? ? ? 0.174 ? ? 4 1 0.968 ? 4.140 13.320 ? 4.300 ? ? ? ? 49 89.100 ? ? ? ? 0.101 ? ? ? ? ? ? ? ? 1.980 ? ? ? ? 0.134 ? ? 5 1 0.972 ? # _refine.aniso_B[1][1] -0.4900 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 1.0700 _refine.aniso_B[2][2] -2.4900 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 0.7000 _refine.B_iso_max 44.780 _refine.B_iso_mean 24.7280 _refine.B_iso_min 19.800 _refine.correlation_coeff_Fo_to_Fc 0.9690 _refine.correlation_coeff_Fo_to_Fc_free 0.9680 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6G8D _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.8500 _refine.ls_d_res_low 13.3200 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 415 _refine.ls_number_reflns_R_free 46 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.2600 _refine.ls_percent_reflns_R_free 10.0000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1780 _refine.ls_R_factor_R_free 0.1910 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1764 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'Ideal beta-strand' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.1960 _refine.pdbx_overall_ESU_R_Free 0.1390 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 5.6850 _refine.overall_SU_ML 0.1460 _refine.overall_SU_R_Cruickshank_DPI 0.1959 _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.8500 _refine_hist.d_res_low 13.3200 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 1 _refine_hist.number_atoms_total 59 _refine_hist.pdbx_number_residues_total 6 _refine_hist.pdbx_B_iso_mean_solvent 44.78 _refine_hist.pdbx_number_atoms_protein 58 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.023 0.020 59 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.041 0.020 50 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.506 1.986 80 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.090 3.000 115 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 3.040 5.000 5 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 37.579 25.000 4 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 8.709 15.000 9 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 0.092 0.200 8 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.009 0.020 63 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.000 0.020 13 ? r_gen_planes_other ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.8500 _refine_ls_shell.d_res_low 1.8970 _refine_ls_shell.number_reflns_all 32 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 3 _refine_ls_shell.number_reflns_R_work 29 _refine_ls_shell.percent_reflns_obs 100.0000 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.3070 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.2780 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6G8D _struct.title 'Crystal Structure of the Amyloid-like LNIYQY segment from the R1 repeat of the E. coli Biofilm-associated CsgA Curli protein' _struct.pdbx_model_details Curli _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6G8D _struct_keywords.text 'Bacterial steric-zipper cross-beta amyloid fibril from E. coli, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CSGA_ECOLI _struct_ref.pdbx_db_accession P28307 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code LNIYQY _struct_ref.pdbx_align_begin 45 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6G8D _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P28307 _struct_ref_seq.db_align_beg 45 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 50 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B 1 2 A,B 1 3 A,B 1 4 A,B 1 5 A,B 1 6 A,B 1 7 A,B 1 8 A,B 1 9 A,B 1 10 A,B 1 11 A,B 1 12 A,B 1 13 A,B 1 14 A,B 1 15 A,B 1 16 A,B 1 17 A,B 1 18 A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support microscopy _pdbx_struct_assembly_auth_evidence.details 'The fibrils are observed by TEM' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_545 x,y-1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -4.8200000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 1_535 x,y-2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -9.6400000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 1_525 x,y-3,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -14.4600000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5 'crystal symmetry operation' 1_515 x,y-4,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -19.2800000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 6 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4.8200000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 7 'crystal symmetry operation' 1_575 x,y+2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 9.6400000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 8 'crystal symmetry operation' 1_585 x,y+3,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 14.4600000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 9 'crystal symmetry operation' 1_595 x,y+4,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 19.2800000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 10 'crystal symmetry operation' 4_555 -x+1/2,y+1/2,-z -1.0000000000 0.0000000000 0.0000000000 21.0900000000 0.0000000000 1.0000000000 0.0000000000 2.4100000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 11 'crystal symmetry operation' 4_545 -x+1/2,y-1/2,-z -1.0000000000 0.0000000000 0.0000000000 21.0900000000 0.0000000000 1.0000000000 0.0000000000 -2.4100000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 12 'crystal symmetry operation' 4_535 -x+1/2,y-3/2,-z -1.0000000000 0.0000000000 0.0000000000 21.0900000000 0.0000000000 1.0000000000 0.0000000000 -7.2300000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 13 'crystal symmetry operation' 4_525 -x+1/2,y-5/2,-z -1.0000000000 0.0000000000 0.0000000000 21.0900000000 0.0000000000 1.0000000000 0.0000000000 -12.0500000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 14 'crystal symmetry operation' 4_515 -x+1/2,y-7/2,-z -1.0000000000 0.0000000000 0.0000000000 21.0900000000 0.0000000000 1.0000000000 0.0000000000 -16.8700000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 15 'crystal symmetry operation' 4_565 -x+1/2,y+3/2,-z -1.0000000000 0.0000000000 0.0000000000 21.0900000000 0.0000000000 1.0000000000 0.0000000000 7.2300000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 16 'crystal symmetry operation' 4_575 -x+1/2,y+5/2,-z -1.0000000000 0.0000000000 0.0000000000 21.0900000000 0.0000000000 1.0000000000 0.0000000000 12.0500000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 17 'crystal symmetry operation' 4_585 -x+1/2,y+7/2,-z -1.0000000000 0.0000000000 0.0000000000 21.0900000000 0.0000000000 1.0000000000 0.0000000000 16.8700000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 18 'crystal symmetry operation' 4_595 -x+1/2,y+9/2,-z -1.0000000000 0.0000000000 0.0000000000 21.0900000000 0.0000000000 1.0000000000 0.0000000000 21.6900000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _pdbx_phasing_MR.entry_id 6G8D _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 1.900 _pdbx_phasing_MR.d_res_low_rotation 13.320 _pdbx_phasing_MR.d_res_high_translation 1.900 _pdbx_phasing_MR.d_res_low_translation 13.320 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASN N N N N 1 ASN CA C N S 2 ASN C C N N 3 ASN O O N N 4 ASN CB C N N 5 ASN CG C N N 6 ASN OD1 O N N 7 ASN ND2 N N N 8 ASN OXT O N N 9 ASN H H N N 10 ASN H2 H N N 11 ASN HA H N N 12 ASN HB2 H N N 13 ASN HB3 H N N 14 ASN HD21 H N N 15 ASN HD22 H N N 16 ASN HXT H N N 17 GLN N N N N 18 GLN CA C N S 19 GLN C C N N 20 GLN O O N N 21 GLN CB C N N 22 GLN CG C N N 23 GLN CD C N N 24 GLN OE1 O N N 25 GLN NE2 N N N 26 GLN OXT O N N 27 GLN H H N N 28 GLN H2 H N N 29 GLN HA H N N 30 GLN HB2 H N N 31 GLN HB3 H N N 32 GLN HG2 H N N 33 GLN HG3 H N N 34 GLN HE21 H N N 35 GLN HE22 H N N 36 GLN HXT H N N 37 HOH O O N N 38 HOH H1 H N N 39 HOH H2 H N N 40 ILE N N N N 41 ILE CA C N S 42 ILE C C N N 43 ILE O O N N 44 ILE CB C N S 45 ILE CG1 C N N 46 ILE CG2 C N N 47 ILE CD1 C N N 48 ILE OXT O N N 49 ILE H H N N 50 ILE H2 H N N 51 ILE HA H N N 52 ILE HB H N N 53 ILE HG12 H N N 54 ILE HG13 H N N 55 ILE HG21 H N N 56 ILE HG22 H N N 57 ILE HG23 H N N 58 ILE HD11 H N N 59 ILE HD12 H N N 60 ILE HD13 H N N 61 ILE HXT H N N 62 LEU N N N N 63 LEU CA C N S 64 LEU C C N N 65 LEU O O N N 66 LEU CB C N N 67 LEU CG C N N 68 LEU CD1 C N N 69 LEU CD2 C N N 70 LEU OXT O N N 71 LEU H H N N 72 LEU H2 H N N 73 LEU HA H N N 74 LEU HB2 H N N 75 LEU HB3 H N N 76 LEU HG H N N 77 LEU HD11 H N N 78 LEU HD12 H N N 79 LEU HD13 H N N 80 LEU HD21 H N N 81 LEU HD22 H N N 82 LEU HD23 H N N 83 LEU HXT H N N 84 TYR N N N N 85 TYR CA C N S 86 TYR C C N N 87 TYR O O N N 88 TYR CB C N N 89 TYR CG C Y N 90 TYR CD1 C Y N 91 TYR CD2 C Y N 92 TYR CE1 C Y N 93 TYR CE2 C Y N 94 TYR CZ C Y N 95 TYR OH O N N 96 TYR OXT O N N 97 TYR H H N N 98 TYR H2 H N N 99 TYR HA H N N 100 TYR HB2 H N N 101 TYR HB3 H N N 102 TYR HD1 H N N 103 TYR HD2 H N N 104 TYR HE1 H N N 105 TYR HE2 H N N 106 TYR HH H N N 107 TYR HXT H N N 108 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASN N CA sing N N 1 ASN N H sing N N 2 ASN N H2 sing N N 3 ASN CA C sing N N 4 ASN CA CB sing N N 5 ASN CA HA sing N N 6 ASN C O doub N N 7 ASN C OXT sing N N 8 ASN CB CG sing N N 9 ASN CB HB2 sing N N 10 ASN CB HB3 sing N N 11 ASN CG OD1 doub N N 12 ASN CG ND2 sing N N 13 ASN ND2 HD21 sing N N 14 ASN ND2 HD22 sing N N 15 ASN OXT HXT sing N N 16 GLN N CA sing N N 17 GLN N H sing N N 18 GLN N H2 sing N N 19 GLN CA C sing N N 20 GLN CA CB sing N N 21 GLN CA HA sing N N 22 GLN C O doub N N 23 GLN C OXT sing N N 24 GLN CB CG sing N N 25 GLN CB HB2 sing N N 26 GLN CB HB3 sing N N 27 GLN CG CD sing N N 28 GLN CG HG2 sing N N 29 GLN CG HG3 sing N N 30 GLN CD OE1 doub N N 31 GLN CD NE2 sing N N 32 GLN NE2 HE21 sing N N 33 GLN NE2 HE22 sing N N 34 GLN OXT HXT sing N N 35 HOH O H1 sing N N 36 HOH O H2 sing N N 37 ILE N CA sing N N 38 ILE N H sing N N 39 ILE N H2 sing N N 40 ILE CA C sing N N 41 ILE CA CB sing N N 42 ILE CA HA sing N N 43 ILE C O doub N N 44 ILE C OXT sing N N 45 ILE CB CG1 sing N N 46 ILE CB CG2 sing N N 47 ILE CB HB sing N N 48 ILE CG1 CD1 sing N N 49 ILE CG1 HG12 sing N N 50 ILE CG1 HG13 sing N N 51 ILE CG2 HG21 sing N N 52 ILE CG2 HG22 sing N N 53 ILE CG2 HG23 sing N N 54 ILE CD1 HD11 sing N N 55 ILE CD1 HD12 sing N N 56 ILE CD1 HD13 sing N N 57 ILE OXT HXT sing N N 58 LEU N CA sing N N 59 LEU N H sing N N 60 LEU N H2 sing N N 61 LEU CA C sing N N 62 LEU CA CB sing N N 63 LEU CA HA sing N N 64 LEU C O doub N N 65 LEU C OXT sing N N 66 LEU CB CG sing N N 67 LEU CB HB2 sing N N 68 LEU CB HB3 sing N N 69 LEU CG CD1 sing N N 70 LEU CG CD2 sing N N 71 LEU CG HG sing N N 72 LEU CD1 HD11 sing N N 73 LEU CD1 HD12 sing N N 74 LEU CD1 HD13 sing N N 75 LEU CD2 HD21 sing N N 76 LEU CD2 HD22 sing N N 77 LEU CD2 HD23 sing N N 78 LEU OXT HXT sing N N 79 TYR N CA sing N N 80 TYR N H sing N N 81 TYR N H2 sing N N 82 TYR CA C sing N N 83 TYR CA CB sing N N 84 TYR CA HA sing N N 85 TYR C O doub N N 86 TYR C OXT sing N N 87 TYR CB CG sing N N 88 TYR CB HB2 sing N N 89 TYR CB HB3 sing N N 90 TYR CG CD1 doub Y N 91 TYR CG CD2 sing Y N 92 TYR CD1 CE1 sing Y N 93 TYR CD1 HD1 sing N N 94 TYR CD2 CE2 doub Y N 95 TYR CD2 HD2 sing N N 96 TYR CE1 CZ doub Y N 97 TYR CE1 HE1 sing N N 98 TYR CE2 CZ sing Y N 99 TYR CE2 HE2 sing N N 100 TYR CZ OH sing N N 101 TYR OH HH sing N N 102 TYR OXT HXT sing N N 103 # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'Ideal beta-strand' # _atom_sites.entry_id 6G8D _atom_sites.fract_transf_matrix[1][1] 0.023708 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.017234 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.207469 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.046320 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 N N . LEU A 1 1 ? -2.952 3.212 5.635 1.00 34.69 ? 1 LEU A N 1 ATOM 2 C CA . LEU A 1 1 ? -1.640 3.430 6.341 1.00 30.86 ? 1 LEU A CA 1 ATOM 3 C C . LEU A 1 1 ? -0.464 2.773 5.584 1.00 30.01 ? 1 LEU A C 1 ATOM 4 O O . LEU A 1 1 ? -0.390 1.514 5.449 1.00 28.28 ? 1 LEU A O 1 ATOM 5 C CB . LEU A 1 1 ? -1.737 2.952 7.788 1.00 30.78 ? 1 LEU A CB 1 ATOM 6 C CG . LEU A 1 1 ? -0.520 3.206 8.639 1.00 30.17 ? 1 LEU A CG 1 ATOM 7 C CD1 . LEU A 1 1 ? 0.023 4.594 8.520 1.00 30.64 ? 1 LEU A CD1 1 ATOM 8 C CD2 . LEU A 1 1 ? -0.891 2.965 10.091 1.00 30.75 ? 1 LEU A CD2 1 ATOM 9 N N . ASN A 1 2 ? 0.396 3.633 5.001 1.00 25.62 ? 2 ASN A N 1 ATOM 10 C CA . ASN A 1 2 ? 1.591 3.148 4.363 1.00 24.23 ? 2 ASN A CA 1 ATOM 11 C C . ASN A 1 2 ? 2.747 3.733 5.060 1.00 22.46 ? 2 ASN A C 1 ATOM 12 O O . ASN A 1 2 ? 2.866 4.930 5.110 1.00 22.73 ? 2 ASN A O 1 ATOM 13 C CB . ASN A 1 2 ? 1.645 3.512 2.903 1.00 25.32 ? 2 ASN A CB 1 ATOM 14 C CG . ASN A 1 2 ? 0.519 2.907 2.163 1.00 28.20 ? 2 ASN A CG 1 ATOM 15 O OD1 . ASN A 1 2 ? -0.343 3.618 1.698 1.00 31.77 ? 2 ASN A OD1 1 ATOM 16 N ND2 . ASN A 1 2 ? 0.486 1.587 2.099 1.00 30.70 ? 2 ASN A ND2 1 ATOM 17 N N . ILE A 1 3 ? 3.658 2.867 5.463 1.00 20.62 ? 3 ILE A N 1 ATOM 18 C CA . ILE A 1 3 ? 4.798 3.258 6.231 1.00 21.54 ? 3 ILE A CA 1 ATOM 19 C C . ILE A 1 3 ? 6.024 2.737 5.563 1.00 20.00 ? 3 ILE A C 1 ATOM 20 O O . ILE A 1 3 ? 6.141 1.532 5.344 1.00 20.83 ? 3 ILE A O 1 ATOM 21 C CB . ILE A 1 3 ? 4.681 2.735 7.648 1.00 22.54 ? 3 ILE A CB 1 ATOM 22 C CG1 . ILE A 1 3 ? 3.477 3.412 8.347 1.00 22.69 ? 3 ILE A CG1 1 ATOM 23 C CG2 . ILE A 1 3 ? 5.955 3.065 8.428 1.00 26.21 ? 3 ILE A CG2 1 ATOM 24 C CD1 . ILE A 1 3 ? 3.193 2.769 9.641 1.00 25.26 ? 3 ILE A CD1 1 ATOM 25 N N . TYR A 1 4 ? 6.958 3.664 5.287 1.00 20.48 ? 4 TYR A N 1 ATOM 26 C CA . TYR A 1 4 ? 8.227 3.338 4.638 1.00 21.17 ? 4 TYR A CA 1 ATOM 27 C C . TYR A 1 4 ? 9.320 3.745 5.523 1.00 20.58 ? 4 TYR A C 1 ATOM 28 O O . TYR A 1 4 ? 9.485 4.923 5.742 1.00 22.80 ? 4 TYR A O 1 ATOM 29 C CB . TYR A 1 4 ? 8.366 4.046 3.256 1.00 21.56 ? 4 TYR A CB 1 ATOM 30 C CG . TYR A 1 4 ? 7.184 3.865 2.396 1.00 20.27 ? 4 TYR A CG 1 ATOM 31 C CD1 . TYR A 1 4 ? 6.082 4.699 2.529 1.00 21.86 ? 4 TYR A CD1 1 ATOM 32 C CD2 . TYR A 1 4 ? 7.138 2.847 1.488 1.00 21.00 ? 4 TYR A CD2 1 ATOM 33 C CE1 . TYR A 1 4 ? 4.984 4.562 1.725 1.00 22.69 ? 4 TYR A CE1 1 ATOM 34 C CE2 . TYR A 1 4 ? 6.027 2.681 0.686 1.00 20.86 ? 4 TYR A CE2 1 ATOM 35 C CZ . TYR A 1 4 ? 4.958 3.545 0.793 1.00 23.29 ? 4 TYR A CZ 1 ATOM 36 O OH . TYR A 1 4 ? 3.829 3.400 0.005 1.00 23.42 ? 4 TYR A OH 1 ATOM 37 N N . GLN A 1 5 ? 10.082 2.784 5.987 1.00 19.80 ? 5 GLN A N 1 ATOM 38 C CA . GLN A 1 5 ? 11.170 3.082 6.879 1.00 24.93 ? 5 GLN A CA 1 ATOM 39 C C . GLN A 1 5 ? 12.485 2.569 6.391 1.00 24.08 ? 5 GLN A C 1 ATOM 40 O O . GLN A 1 5 ? 12.710 1.398 6.320 1.00 25.29 ? 5 GLN A O 1 ATOM 41 C CB . GLN A 1 5 ? 10.880 2.543 8.305 1.00 27.62 ? 5 GLN A CB 1 ATOM 42 C CG . GLN A 1 5 ? 9.797 3.267 9.130 1.00 29.32 ? 5 GLN A CG 1 ATOM 43 C CD . GLN A 1 5 ? 9.820 2.831 10.606 1.00 30.50 ? 5 GLN A CD 1 ATOM 44 O OE1 . GLN A 1 5 ? 9.651 3.642 11.519 1.00 36.27 ? 5 GLN A OE1 1 ATOM 45 N NE2 . GLN A 1 5 ? 10.067 1.551 10.839 1.00 34.19 ? 5 GLN A NE2 1 ATOM 46 N N . TYR A 1 6 ? 13.376 3.491 6.118 1.00 26.45 ? 6 TYR A N 1 ATOM 47 C CA . TYR A 1 6 ? 14.668 3.174 5.631 1.00 29.07 ? 6 TYR A CA 1 ATOM 48 C C . TYR A 1 6 ? 15.688 3.553 6.701 1.00 33.62 ? 6 TYR A C 1 ATOM 49 O O . TYR A 1 6 ? 15.556 4.582 7.366 1.00 43.13 ? 6 TYR A O 1 ATOM 50 C CB . TYR A 1 6 ? 14.915 3.998 4.380 1.00 26.82 ? 6 TYR A CB 1 ATOM 51 C CG . TYR A 1 6 ? 13.915 3.826 3.293 1.00 23.42 ? 6 TYR A CG 1 ATOM 52 C CD1 . TYR A 1 6 ? 14.067 2.878 2.295 1.00 22.57 ? 6 TYR A CD1 1 ATOM 53 C CD2 . TYR A 1 6 ? 12.812 4.646 3.244 1.00 24.08 ? 6 TYR A CD2 1 ATOM 54 C CE1 . TYR A 1 6 ? 13.124 2.753 1.290 1.00 21.73 ? 6 TYR A CE1 1 ATOM 55 C CE2 . TYR A 1 6 ? 11.875 4.525 2.246 1.00 22.38 ? 6 TYR A CE2 1 ATOM 56 C CZ . TYR A 1 6 ? 12.055 3.575 1.272 1.00 20.68 ? 6 TYR A CZ 1 ATOM 57 O OH . TYR A 1 6 ? 11.123 3.505 0.299 1.00 20.97 ? 6 TYR A OH 1 ATOM 58 O OXT . TYR A 1 6 ? 16.691 2.892 6.956 1.00 41.18 ? 6 TYR A OXT 1 HETATM 59 O O . HOH B 2 . ? 14.726 6.067 8.906 1.00 44.78 ? 101 HOH A O 1 #