data_6M9J # _entry.id 6M9J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6M9J pdb_00006m9j 10.2210/pdb6m9j/pdb WWPDB D_1000236321 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-03-27 2 'Structure model' 1 1 2019-12-04 3 'Structure model' 1 2 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_audit_support 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' diffrn_radiation_wavelength # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_audit_support.funding_organization' 2 3 'Structure model' '_database_2.pdbx_DOI' 3 3 'Structure model' '_database_2.pdbx_database_accession' 4 3 'Structure model' '_diffrn_radiation_wavelength.wavelength' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6M9J _pdbx_database_status.recvd_initial_deposition_date 2018-08-23 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 6M7M _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zee, C.' 1 ? 'Glynn, C.' 2 ? 'Gallagher-Jones, M.' 3 ? 'Miao, J.' 4 ? 'Santiago, C.G.' 5 ? 'Cascio, D.' 6 ? 'Gonen, T.' 7 ? 'Sawaya, M.R.' 8 ? 'Rodriguez, J.A.' 9 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev IUCrJ _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2052-2525 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 6 _citation.language ? _citation.page_first 197 _citation.page_last 205 _citation.title 'Homochiral and racemic MicroED structures of a peptide repeat from the ice-nucleation protein InaZ.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1107/S2052252518017621 _citation.pdbx_database_id_PubMed 30867917 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zee, C.T.' 1 ? primary 'Glynn, C.' 2 0000-0002-2197-2357 primary 'Gallagher-Jones, M.' 3 0000-0003-4227-917X primary 'Miao, J.' 4 0000-0001-5527-295X primary 'Santiago, C.G.' 5 0000-0001-9675-5931 primary 'Cascio, D.' 6 ? primary 'Gonen, T.' 7 0000-0003-3326-1242 primary 'Sawaya, M.R.' 8 0000-0003-0874-9043 primary 'Rodriguez, J.A.' 9 0000-0002-0248-4964 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Ice nucleation protein' 522.508 1 ? ? 'UNP residues 707-712' DL-GSTSTA 2 water nat water 18.015 3 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name inaZ # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSTSTA _entity_poly.pdbx_seq_one_letter_code_can GSTSTA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 THR n 1 4 SER n 1 5 THR n 1 6 ALA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 6 _pdbx_entity_src_syn.organism_scientific 'Pseudomonas syringae pv. syringae' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 321 _pdbx_entity_src_syn.details DL-GSTSTA # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 707 707 GLY GLY A . n A 1 2 SER 2 708 708 SER SER A . n A 1 3 THR 3 709 709 THR THR A . n A 1 4 SER 4 710 710 SER SER A . n A 1 5 THR 5 711 711 THR THR A . n A 1 6 ALA 6 712 712 ALA ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 801 3 HOH HOH A . B 2 HOH 2 802 2 HOH HOH A . B 2 HOH 3 803 1 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? 'Wolfgang Kabsch' ? ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? XSCALE ? ? package . 1 ? refinement ? ? 'Paul D. Adams' PDAdams@lbl.gov ? ? ? ? C++ http://www.phenix-online.org/ ? PHENIX ? ? package 1.12_2829 2 ? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Sep. 1, 2017' ? ? ? C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.24 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXD ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 104.480 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6M9J _cell.details ? _cell.formula_units_Z ? _cell.length_a 14.030 _cell.length_a_esd ? _cell.length_b 9.220 _cell.length_b_esd ? _cell.length_c 20.770 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M9J _symmetry.cell_setting ? _symmetry.Int_Tables_number 14 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21/c 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6M9J _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON CRYSTALLOGRAPHY' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _diffrn.ambient_environment ? _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.area_resol_mean ? _diffrn_detector.details ? _diffrn_detector.detector ? _diffrn_detector.diffrn_id 1 _diffrn_detector.dtime ? _diffrn_detector.pdbx_collection_date 2017-11-27 _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_frequency ? _diffrn_detector.type ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type electron # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _reflns.B_iso_Wilson_estimate 46.140 _reflns.entry_id 6M9J _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 0.900 _reflns.d_resolution_low 7.629 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 2906 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 77.600 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.401 _reflns.pdbx_Rmerge_I_obs 0.128 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 5.460 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.833 _reflns.pdbx_scaling_rejects 27 _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.151 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 9884 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.991 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 0.900 0.920 ? 2.520 ? 728 288 ? 230 79.900 ? ? ? ? 0.332 ? ? ? ? ? ? ? ? 3.165 ? ? ? ? 0.387 ? ? 1 1 0.962 ? 0.920 0.950 ? 2.560 ? 652 260 ? 196 75.400 ? ? ? ? 0.396 ? ? ? ? ? ? ? ? 3.327 ? ? ? ? 0.466 ? ? 2 1 0.819 ? 0.950 0.980 ? 3.080 ? 734 259 ? 204 78.800 ? ? ? ? 0.391 ? ? ? ? ? ? ? ? 3.598 ? ? ? ? 0.455 ? ? 3 1 0.860 ? 0.980 1.010 ? 3.330 ? 725 266 ? 205 77.100 ? ? ? ? 0.296 ? ? ? ? ? ? ? ? 3.537 ? ? ? ? 0.347 ? ? 4 1 0.962 ? 1.010 1.040 ? 4.020 ? 716 253 ? 206 81.400 ? ? ? ? 0.231 ? ? ? ? ? ? ? ? 3.476 ? ? ? ? 0.269 ? ? 5 1 0.985 ? 1.040 1.080 ? 4.550 ? 571 227 ? 167 73.600 ? ? ? ? 0.225 ? ? ? ? ? ? ? ? 3.419 ? ? ? ? 0.262 ? ? 6 1 0.973 ? 1.080 1.120 ? 5.280 ? 657 235 ? 190 80.900 ? ? ? ? 0.168 ? ? ? ? ? ? ? ? 3.458 ? ? ? ? 0.198 ? ? 7 1 0.975 ? 1.120 1.160 ? 6.060 ? 616 230 ? 174 75.700 ? ? ? ? 0.124 ? ? ? ? ? ? ? ? 3.540 ? ? ? ? 0.145 ? ? 8 1 0.992 ? 1.160 1.210 ? 4.810 ? 536 200 ? 160 80.000 ? ? ? ? 0.181 ? ? ? ? ? ? ? ? 3.350 ? ? ? ? 0.213 ? ? 9 1 0.991 ? 1.210 1.270 ? 5.480 ? 574 210 ? 164 78.100 ? ? ? ? 0.164 ? ? ? ? ? ? ? ? 3.500 ? ? ? ? 0.193 ? ? 10 1 0.992 ? 1.270 1.340 ? 6.520 ? 501 184 ? 141 76.600 ? ? ? ? 0.136 ? ? ? ? ? ? ? ? 3.553 ? ? ? ? 0.159 ? ? 11 1 0.992 ? 1.340 1.420 ? 6.170 ? 475 185 ? 143 77.300 ? ? ? ? 0.147 ? ? ? ? ? ? ? ? 3.322 ? ? ? ? 0.174 ? ? 12 1 0.987 ? 1.420 1.520 ? 7.180 ? 502 179 ? 146 81.600 ? ? ? ? 0.135 ? ? ? ? ? ? ? ? 3.438 ? ? ? ? 0.158 ? ? 13 1 0.987 ? 1.520 1.640 ? 7.890 ? 377 156 ? 114 73.100 ? ? ? ? 0.130 ? ? ? ? ? ? ? ? 3.307 ? ? ? ? 0.154 ? ? 14 1 0.996 ? 1.640 1.800 ? 7.760 ? 377 147 ? 111 75.500 ? ? ? ? 0.140 ? ? ? ? ? ? ? ? 3.396 ? ? ? ? 0.166 ? ? 15 1 0.956 ? 1.800 2.010 ? 9.150 ? 313 129 ? 98 76.000 ? ? ? ? 0.088 ? ? ? ? ? ? ? ? 3.194 ? ? ? ? 0.103 ? ? 16 1 0.996 ? 2.010 2.320 ? 10.060 ? 332 125 ? 98 78.400 ? ? ? ? 0.080 ? ? ? ? ? ? ? ? 3.388 ? ? ? ? 0.094 ? ? 17 1 0.991 ? 2.320 2.850 ? 9.460 ? 227 99 ? 73 73.700 ? ? ? ? 0.073 ? ? ? ? ? ? ? ? 3.110 ? ? ? ? 0.086 ? ? 18 1 0.998 ? 2.850 4.030 ? 11.820 ? 189 72 ? 57 79.200 ? ? ? ? 0.102 ? ? ? ? ? ? ? ? 3.316 ? ? ? ? 0.121 ? ? 19 1 0.986 ? 4.030 7.629 ? 10.130 ? 82 42 ? 29 69.000 ? ? ? ? 0.065 ? ? ? ? ? ? ? ? 2.828 ? ? ? ? 0.079 ? ? 20 1 0.994 ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 27.350 _refine.B_iso_mean 3.5520 _refine.B_iso_min 0.700 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6M9J _refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 0.9000 _refine.ls_d_res_low 7.6290 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 2896 _refine.ls_number_reflns_R_free 290 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 77.4300 _refine.ls_percent_reflns_R_free 10.0100 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2342 _refine.ls_R_factor_R_free 0.2518 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2325 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.400 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 13.9200 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.0500 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine_hist.d_res_high 0.9000 _refine_hist.d_res_low 7.6290 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 3 _refine_hist.number_atoms_total 39 _refine_hist.pdbx_number_residues_total 6 _refine_hist.pdbx_B_iso_mean_solvent 20.81 _refine_hist.pdbx_number_atoms_protein 36 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON CRYSTALLOGRAPHY' ? 0.008 ? 35 ? f_bond_d ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 1.119 ? 47 ? f_angle_d ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.071 ? 7 ? f_chiral_restr ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.004 ? 6 ? f_plane_restr ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 7.023 ? 10 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'ELECTRON CRYSTALLOGRAPHY' 0.9000 0.9409 377 . 38 339 78.0000 . . . 0.4214 0.0000 0.3109 . . . . . . 8 . . . 'ELECTRON CRYSTALLOGRAPHY' 0.9409 0.9904 366 . 36 330 80.0000 . . . 0.2962 0.0000 0.2575 . . . . . . 8 . . . 'ELECTRON CRYSTALLOGRAPHY' 0.9904 1.0524 358 . 36 322 77.0000 . . . 0.2493 0.0000 0.2423 . . . . . . 8 . . . 'ELECTRON CRYSTALLOGRAPHY' 1.0524 1.1334 359 . 36 323 78.0000 . . . 0.2204 0.0000 0.2013 . . . . . . 8 . . . 'ELECTRON CRYSTALLOGRAPHY' 1.1334 1.2470 356 . 36 320 77.0000 . . . 0.2590 0.0000 0.2410 . . . . . . 8 . . . 'ELECTRON CRYSTALLOGRAPHY' 1.2470 1.4264 363 . 37 326 77.0000 . . . 0.2361 0.0000 0.2554 . . . . . . 8 . . . 'ELECTRON CRYSTALLOGRAPHY' 1.4264 1.7933 361 . 36 325 77.0000 . . . 0.2452 0.0000 0.2450 . . . . . . 8 . . . 'ELECTRON CRYSTALLOGRAPHY' 1.7933 7.6290 356 . 35 321 76.0000 . . . 0.2284 0.0000 0.1993 . . . . . . 8 . . . # _struct.entry_id 6M9J _struct.title 'Racemic-GSTSTA from degenerate octameric repeats in InaZ, residues 707-712' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6M9J _struct_keywords.text 'amyloid, racemic, ice nucleation, MicroED, InaZ, pseudomonas syringae, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ICEN_PSESY _struct_ref.pdbx_db_accession P06620 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GSTSTA _struct_ref.pdbx_align_begin 707 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6M9J _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P06620 _struct_ref_seq.db_align_beg 707 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 712 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 707 _struct_ref_seq.pdbx_auth_seq_align_end 712 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 780 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _em_3d_fitting.entry_id 6M9J _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol 'AB INITIO MODEL' _em_3d_fitting.ref_space RECIPROCAL _em_3d_fitting.target_criteria 'maximum likelihood' _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 6M9J _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.resolution ? _em_3d_reconstruction.resolution_method 'DIFFRACTION PATTERN/LAYERLINES' _em_3d_reconstruction.symmetry_type '3D CRYSTAL' _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 8.0 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'L-GSTSTA from ice nucleation protein, inaZ, and its enantiomer, D-GSTSTA' _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 6M9J _em_imaging.accelerating_voltage 200 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TECNAI F20' _em_imaging.mode DIFFRACTION _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.citation_id ? _em_sample_support.details unspecified _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? _em_sample_support.id 1 _em_sample_support.method ? _em_sample_support.specimen_id 1 # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 6M9J _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6M9J _em_experiment.id 1 _em_experiment.aggregation_state '3D ARRAY' _em_experiment.reconstruction_method CRYSTALLOGRAPHY _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 GLY N N N N 14 GLY CA C N N 15 GLY C C N N 16 GLY O O N N 17 GLY OXT O N N 18 GLY H H N N 19 GLY H2 H N N 20 GLY HA2 H N N 21 GLY HA3 H N N 22 GLY HXT H N N 23 HOH O O N N 24 HOH H1 H N N 25 HOH H2 H N N 26 SER N N N N 27 SER CA C N S 28 SER C C N N 29 SER O O N N 30 SER CB C N N 31 SER OG O N N 32 SER OXT O N N 33 SER H H N N 34 SER H2 H N N 35 SER HA H N N 36 SER HB2 H N N 37 SER HB3 H N N 38 SER HG H N N 39 SER HXT H N N 40 THR N N N N 41 THR CA C N S 42 THR C C N N 43 THR O O N N 44 THR CB C N R 45 THR OG1 O N N 46 THR CG2 C N N 47 THR OXT O N N 48 THR H H N N 49 THR H2 H N N 50 THR HA H N N 51 THR HB H N N 52 THR HG1 H N N 53 THR HG21 H N N 54 THR HG22 H N N 55 THR HG23 H N N 56 THR HXT H N N 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 GLY N CA sing N N 13 GLY N H sing N N 14 GLY N H2 sing N N 15 GLY CA C sing N N 16 GLY CA HA2 sing N N 17 GLY CA HA3 sing N N 18 GLY C O doub N N 19 GLY C OXT sing N N 20 GLY OXT HXT sing N N 21 HOH O H1 sing N N 22 HOH O H2 sing N N 23 SER N CA sing N N 24 SER N H sing N N 25 SER N H2 sing N N 26 SER CA C sing N N 27 SER CA CB sing N N 28 SER CA HA sing N N 29 SER C O doub N N 30 SER C OXT sing N N 31 SER CB OG sing N N 32 SER CB HB2 sing N N 33 SER CB HB3 sing N N 34 SER OG HG sing N N 35 SER OXT HXT sing N N 36 THR N CA sing N N 37 THR N H sing N N 38 THR N H2 sing N N 39 THR CA C sing N N 40 THR CA CB sing N N 41 THR CA HA sing N N 42 THR C O doub N N 43 THR C OXT sing N N 44 THR CB OG1 sing N N 45 THR CB CG2 sing N N 46 THR CB HB sing N N 47 THR OG1 HG1 sing N N 48 THR CG2 HG21 sing N N 49 THR CG2 HG22 sing N N 50 THR CG2 HG23 sing N N 51 THR OXT HXT sing N N 52 # _em_3d_crystal_entity.id 1 _em_3d_crystal_entity.image_processing_id 1 _em_3d_crystal_entity.angle_alpha 90 _em_3d_crystal_entity.angle_beta 104.5 _em_3d_crystal_entity.angle_gamma 90.0 _em_3d_crystal_entity.length_a 14.03 _em_3d_crystal_entity.length_b 9.22 _em_3d_crystal_entity.length_c 20.77 _em_3d_crystal_entity.space_group_name 'P 1 21/c 1' _em_3d_crystal_entity.space_group_num 14 # _em_crystal_formation.id 1 _em_crystal_formation.specimen_id 1 _em_crystal_formation.atmosphere ? _em_crystal_formation.details '0.1 M imidazole, pH 8.0, 10% w/v PEG8000' _em_crystal_formation.instrument ? _em_crystal_formation.lipid_mixture ? _em_crystal_formation.lipid_protein_ratio ? _em_crystal_formation.temperature 298 _em_crystal_formation.time ? _em_crystal_formation.time_unit ? # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # _em_diffraction.id 1 _em_diffraction.camera_length 1156 _em_diffraction.imaging_id 1 _em_diffraction.tilt_angle_list ? # _em_diffraction_shell.id 1 _em_diffraction_shell.em_diffraction_stats_id 1 _em_diffraction_shell.fourier_space_coverage 77.4 _em_diffraction_shell.high_resolution 7.63 _em_diffraction_shell.low_resolution 0.9 _em_diffraction_shell.multiplicity 3.4 _em_diffraction_shell.num_structure_factors 2896 _em_diffraction_shell.phase_residual 0.00000001 # _em_diffraction_stats.id 1 _em_diffraction_stats.details ? _em_diffraction_stats.image_processing_id 1 _em_diffraction_stats.fourier_space_coverage 77.4 _em_diffraction_stats.high_resolution 0.9 _em_diffraction_stats.num_intensities_measured 9884 _em_diffraction_stats.num_structure_factors 2906 _em_diffraction_stats.overall_phase_error 13.92 _em_diffraction_stats.overall_phase_residual 0.00000001 _em_diffraction_stats.phase_error_rejection_criteria 'not applicable' _em_diffraction_stats.r_merge 0.128 _em_diffraction_stats.r_sym 0.128 # _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.ncbi_tax_id 321 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Pseudomonas syringae pv. syringae' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.cell ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 0.01 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'TVIPS TEMCAM-F416 (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_name ? _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.energyfilter_slit_width ? _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'IMAGE ACQUISITION' ? ? ? ? ? 1 2 MASKING ? ? ? ? ? ? 3 'CTF CORRECTION' ? ? ? 1 ? ? 4 'LAYERLINE INDEXING' ? ? ? ? ? ? 5 'DIFFRACTION INDEXING' ? ? ? ? ? ? 6 'MODEL FITTING' ? Coot 0.8.9.1 ? 1 ? 7 OTHER ? ? ? ? ? ? 8 'MOLECULAR REPLACEMENT' ? ? ? 1 ? ? 9 'LATTICE DISTORTION CORRECTION' ? ? ? 1 ? ? 10 'SYMMETRY DETERMINATION' ? ? ? 1 ? ? 11 'CRYSTALLOGRAPHY MERGING' ? XSCALE ? 1 ? ? 12 RECONSTRUCTION ? SHELXD ? 1 ? ? 13 'MODEL REFINEMENT' ? PHENIX 1.12_2829 ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Department of Energy (DOE, United States)' 'United States' DE-FC02-02ER63421 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' 'P41 GM103403' 2 # _atom_sites.entry_id 6M9J _atom_sites.fract_transf_matrix[1][1] 0.071276 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.018412 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.108460 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.049727 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H N O # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 N N . GLY A 1 1 ? 17.516 7.484 13.377 1.00 3.13 ? 707 GLY A N 1 ATOM 2 C CA . GLY A 1 1 ? 17.329 8.122 12.088 1.00 1.75 ? 707 GLY A CA 1 ATOM 3 C C . GLY A 1 1 ? 16.217 7.455 11.323 1.00 1.19 ? 707 GLY A C 1 ATOM 4 O O . GLY A 1 1 ? 15.860 6.314 11.611 1.00 1.85 ? 707 GLY A O 1 ATOM 5 H HA2 . GLY A 1 1 ? 17.106 9.057 12.212 1.00 2.10 ? 707 GLY A HA2 1 ATOM 6 H HA3 . GLY A 1 1 ? 18.146 8.061 11.568 1.00 2.10 ? 707 GLY A HA3 1 ATOM 7 N N . SER A 1 2 ? 15.651 8.163 10.355 1.00 1.29 ? 708 SER A N 1 ATOM 8 C CA . SER A 1 2 ? 14.613 7.580 9.518 1.00 1.31 ? 708 SER A CA 1 ATOM 9 C C . SER A 1 2 ? 14.665 8.201 8.132 1.00 1.55 ? 708 SER A C 1 ATOM 10 O O . SER A 1 2 ? 15.106 9.342 7.950 1.00 2.02 ? 708 SER A O 1 ATOM 11 C CB . SER A 1 2 ? 13.215 7.766 10.125 1.00 2.57 ? 708 SER A CB 1 ATOM 12 O OG . SER A 1 2 ? 12.793 9.113 10.054 1.00 3.67 ? 708 SER A OG 1 ATOM 13 H H . SER A 1 2 ? 15.849 8.978 10.162 1.00 1.55 ? 708 SER A H 1 ATOM 14 H HA . SER A 1 2 ? 14.777 6.628 9.428 1.00 1.58 ? 708 SER A HA 1 ATOM 15 H HB2 . SER A 1 2 ? 12.585 7.214 9.636 1.00 3.09 ? 708 SER A HB2 1 ATOM 16 H HB3 . SER A 1 2 ? 13.239 7.494 11.056 1.00 3.09 ? 708 SER A HB3 1 ATOM 17 H HG . SER A 1 2 ? 12.766 9.363 9.253 1.00 4.41 ? 708 SER A HG 1 ATOM 18 N N . THR A 1 3 ? 14.179 7.444 7.158 1.00 1.48 ? 709 THR A N 1 ATOM 19 C CA . THR A 1 3 ? 14.075 7.916 5.787 1.00 1.16 ? 709 THR A CA 1 ATOM 20 C C . THR A 1 3 ? 12.888 7.260 5.130 1.00 1.16 ? 709 THR A C 1 ATOM 21 O O . THR A 1 3 ? 12.589 6.102 5.414 1.00 1.75 ? 709 THR A O 1 ATOM 22 C CB . THR A 1 3 ? 15.311 7.552 4.982 1.00 3.14 ? 709 THR A CB 1 ATOM 23 O OG1 . THR A 1 3 ? 16.453 8.066 5.659 1.00 5.42 ? 709 THR A OG1 1 ATOM 24 C CG2 . THR A 1 3 ? 15.251 8.107 3.586 1.00 5.25 ? 709 THR A CG2 1 ATOM 25 H H . THR A 1 3 ? 13.898 6.638 7.269 1.00 1.77 ? 709 THR A H 1 ATOM 26 H HA . THR A 1 3 ? 13.956 8.878 5.772 1.00 1.39 ? 709 THR A HA 1 ATOM 27 H HB . THR A 1 3 ? 15.382 6.587 4.923 1.00 3.77 ? 709 THR A HB 1 ATOM 28 H HG1 . THR A 1 3 ? 17.150 7.876 5.231 1.00 6.51 ? 709 THR A HG1 1 ATOM 29 H HG21 . THR A 1 3 ? 16.051 7.861 3.096 1.00 6.30 ? 709 THR A HG21 1 ATOM 30 H HG22 . THR A 1 3 ? 14.475 7.754 3.122 1.00 6.30 ? 709 THR A HG22 1 ATOM 31 H HG23 . THR A 1 3 ? 15.186 9.075 3.617 1.00 6.30 ? 709 THR A HG23 1 ATOM 32 N N . SER A 1 4 ? 12.204 8.007 4.268 1.00 1.33 ? 710 SER A N 1 ATOM 33 C CA . SER A 1 4 ? 11.157 7.410 3.469 1.00 1.60 ? 710 SER A CA 1 ATOM 34 C C . SER A 1 4 ? 11.058 8.138 2.137 1.00 1.84 ? 710 SER A C 1 ATOM 35 O O . SER A 1 4 ? 11.360 9.332 2.048 1.00 1.92 ? 710 SER A O 1 ATOM 36 C CB . SER A 1 4 ? 9.814 7.404 4.201 1.00 2.86 ? 710 SER A CB 1 ATOM 37 O OG . SER A 1 4 ? 8.889 6.656 3.455 1.00 5.33 ? 710 SER A OG 1 ATOM 38 H H . SER A 1 4 ? 12.327 8.847 4.133 1.00 1.60 ? 710 SER A H 1 ATOM 39 H HA . SER A 1 4 ? 11.396 6.488 3.284 1.00 1.93 ? 710 SER A HA 1 ATOM 40 H HB2 . SER A 1 4 ? 9.926 6.999 5.075 1.00 3.43 ? 710 SER A HB2 1 ATOM 41 H HB3 . SER A 1 4 ? 9.493 8.315 4.290 1.00 3.43 ? 710 SER A HB3 1 ATOM 42 H HG . SER A 1 4 ? 8.146 6.644 3.846 1.00 6.40 ? 710 SER A HG 1 ATOM 43 N N . THR A 1 5 ? 10.666 7.393 1.098 1.00 1.36 ? 711 THR A N 1 ATOM 44 C CA . THR A 1 5 ? 10.364 7.961 -0.205 1.00 0.70 ? 711 THR A CA 1 ATOM 45 C C . THR A 1 5 ? 9.034 7.421 -0.690 1.00 1.07 ? 711 THR A C 1 ATOM 46 O O . THR A 1 5 ? 8.605 6.334 -0.306 1.00 1.63 ? 711 THR A O 1 ATOM 47 C CB . THR A 1 5 ? 11.418 7.660 -1.284 1.00 2.11 ? 711 THR A CB 1 ATOM 48 O OG1 . THR A 1 5 ? 11.443 6.250 -1.562 1.00 3.58 ? 711 THR A OG1 1 ATOM 49 C CG2 . THR A 1 5 ? 12.772 8.140 -0.859 1.00 2.49 ? 711 THR A CG2 1 ATOM 50 H H . THR A 1 5 ? 10.568 6.540 1.132 1.00 1.63 ? 711 THR A H 1 ATOM 51 H HA . THR A 1 5 ? 10.286 8.924 -0.121 1.00 0.85 ? 711 THR A HA 1 ATOM 52 H HB . THR A 1 5 ? 11.178 8.134 -2.096 1.00 2.53 ? 711 THR A HB 1 ATOM 53 H HG1 . THR A 1 5 ? 12.019 6.083 -2.151 1.00 4.30 ? 711 THR A HG1 1 ATOM 54 H HG21 . THR A 1 5 ? 13.425 7.943 -1.549 1.00 2.99 ? 711 THR A HG21 1 ATOM 55 H HG22 . THR A 1 5 ? 12.752 9.098 -0.708 1.00 2.99 ? 711 THR A HG22 1 ATOM 56 H HG23 . THR A 1 5 ? 13.038 7.697 -0.038 1.00 2.99 ? 711 THR A HG23 1 ATOM 57 N N . ALA A 1 6 ? 8.405 8.206 -1.568 1.00 1.30 ? 712 ALA A N 1 ATOM 58 C CA . ALA A 1 6 ? 7.203 7.824 -2.292 1.00 1.96 ? 712 ALA A CA 1 ATOM 59 C C . ALA A 1 6 ? 7.285 8.356 -3.711 1.00 2.70 ? 712 ALA A C 1 ATOM 60 O O . ALA A 1 6 ? 7.932 9.381 -3.940 1.00 4.52 ? 712 ALA A O 1 ATOM 61 C CB . ALA A 1 6 ? 5.946 8.388 -1.617 1.00 2.97 ? 712 ALA A CB 1 ATOM 62 O OXT . ALA A 1 6 ? 6.691 7.807 -4.647 1.00 5.34 ? 712 ALA A OXT 1 ATOM 63 H H . ALA A 1 6 ? 8.674 8.998 -1.765 1.00 1.56 ? 712 ALA A H 1 ATOM 64 H HA . ALA A 1 6 ? 7.133 6.857 -2.324 1.00 2.35 ? 712 ALA A HA 1 ATOM 65 H HB1 . ALA A 1 6 ? 5.166 8.115 -2.125 1.00 3.56 ? 712 ALA A HB1 1 ATOM 66 H HB2 . ALA A 1 6 ? 5.891 8.041 -0.713 1.00 3.56 ? 712 ALA A HB2 1 ATOM 67 H HB3 . ALA A 1 6 ? 6.006 9.356 -1.597 1.00 3.56 ? 712 ALA A HB3 1 HETATM 68 O O . HOH B 2 . ? 7.762 5.155 5.414 1.00 27.35 ? 801 HOH A O 1 HETATM 69 O O . HOH B 2 . ? 11.096 9.136 7.873 1.00 25.39 ? 802 HOH A O 1 HETATM 70 O O . HOH B 2 . ? 7.081 7.957 6.404 1.00 9.68 ? 803 HOH A O 1 # loop_ _atom_site_anisotrop.id _atom_site_anisotrop.type_symbol _atom_site_anisotrop.pdbx_label_atom_id _atom_site_anisotrop.pdbx_label_alt_id _atom_site_anisotrop.pdbx_label_comp_id _atom_site_anisotrop.pdbx_label_asym_id _atom_site_anisotrop.pdbx_label_seq_id _atom_site_anisotrop.pdbx_PDB_ins_code _atom_site_anisotrop.U[1][1] _atom_site_anisotrop.U[2][2] _atom_site_anisotrop.U[3][3] _atom_site_anisotrop.U[1][2] _atom_site_anisotrop.U[1][3] _atom_site_anisotrop.U[2][3] _atom_site_anisotrop.pdbx_auth_seq_id _atom_site_anisotrop.pdbx_auth_comp_id _atom_site_anisotrop.pdbx_auth_asym_id _atom_site_anisotrop.pdbx_auth_atom_id 1 N N . GLY A 1 ? 0.0300 0.0592 0.0298 -0.0001 0.0150 -0.0020 707 GLY A N 2 C CA . GLY A 1 ? 0.0146 0.0358 0.0160 -0.0010 0.0053 0.0053 707 GLY A CA 3 C C . GLY A 1 ? 0.0119 0.0207 0.0129 0.0033 -0.0022 0.0040 707 GLY A C 4 O O . GLY A 1 ? 0.0229 0.0300 0.0173 0.0052 0.0105 0.0002 707 GLY A O 7 N N . SER A 2 ? 0.0192 0.0149 0.0149 0.0061 -0.0092 -0.0047 708 SER A N 8 C CA . SER A 2 ? 0.0256 0.0104 0.0140 0.0053 0.0016 -0.0034 708 SER A CA 9 C C . SER A 2 ? 0.0325 0.0117 0.0145 0.0000 -0.0085 -0.0026 708 SER A C 10 O O . SER A 2 ? 0.0392 0.0128 0.0248 0.0004 -0.0177 -0.0003 708 SER A O 11 C CB . SER A 2 ? 0.0251 0.0463 0.0264 -0.0124 0.0096 -0.0076 708 SER A CB 12 O OG . SER A 2 ? 0.0278 0.0638 0.0479 0.0185 0.0086 0.0013 708 SER A OG 18 N N . THR A 3 ? 0.0288 0.0129 0.0143 0.0078 -0.0084 -0.0045 709 THR A N 19 C CA . THR A 3 ? 0.0143 0.0100 0.0197 0.0031 -0.0088 -0.0055 709 THR A CA 20 C C . THR A 3 ? 0.0204 0.0073 0.0163 0.0010 -0.0104 -0.0007 709 THR A C 21 O O . THR A 3 ? 0.0269 0.0144 0.0253 -0.0014 -0.0093 0.0076 709 THR A O 22 C CB . THR A 3 ? 0.0170 0.0547 0.0478 0.0014 0.0056 -0.0110 709 THR A CB 23 O OG1 . THR A 3 ? 0.0337 0.0953 0.0771 0.0084 0.0203 -0.0059 709 THR A OG1 24 C CG2 . THR A 3 ? 0.0428 0.0868 0.0699 0.0104 0.0288 -0.0022 709 THR A CG2 32 N N . SER A 4 ? 0.0277 0.0091 0.0138 -0.0036 -0.0102 0.0019 710 SER A N 33 C CA . SER A 4 ? 0.0316 0.0107 0.0187 0.0026 -0.0136 -0.0015 710 SER A CA 34 C C . SER A 4 ? 0.0393 0.0119 0.0185 0.0028 -0.0136 -0.0013 710 SER A C 35 O O . SER A 4 ? 0.0413 0.0152 0.0165 0.0014 -0.0120 0.0001 710 SER A O 36 C CB . SER A 4 ? 0.0186 0.0449 0.0451 0.0105 -0.0023 -0.0119 710 SER A CB 37 O OG . SER A 4 ? 0.0257 0.0928 0.0841 0.0025 0.0108 -0.0042 710 SER A OG 43 N N . THR A 5 ? 0.0270 0.0107 0.0140 -0.0001 -0.0103 -0.0008 711 THR A N 44 C CA . THR A 5 ? 0.0085 0.0077 0.0107 0.0019 0.0014 0.0048 711 THR A CA 45 C C . THR A 5 ? 0.0153 0.0145 0.0111 -0.0008 -0.0036 -0.0035 711 THR A C 46 O O . THR A 5 ? 0.0126 0.0303 0.0190 -0.0027 0.0034 0.0052 711 THR A O 47 C CB . THR A 5 ? 0.0129 0.0394 0.0278 0.0025 0.0069 0.0018 711 THR A CB 48 O OG1 . THR A 5 ? 0.0347 0.0501 0.0512 -0.0013 0.0230 -0.0100 711 THR A OG1 49 C CG2 . THR A 5 ? 0.0153 0.0435 0.0359 0.0065 0.0080 0.0013 711 THR A CG2 57 N N . ALA A 6 ? 0.0161 0.0180 0.0155 0.0030 -0.0061 -0.0043 712 ALA A N 58 C CA . ALA A 6 ? 0.0138 0.0307 0.0299 0.0064 0.0055 -0.0061 712 ALA A CA 59 C C . ALA A 6 ? 0.0309 0.0511 0.0207 -0.0063 0.0110 -0.0003 712 ALA A C 60 O O . ALA A 6 ? 0.0639 0.0703 0.0377 -0.0045 0.0251 0.0107 712 ALA A O 61 C CB . ALA A 6 ? 0.0231 0.0447 0.0449 -0.0011 0.0170 -0.0036 712 ALA A CB 62 O OXT . ALA A 6 ? 0.0427 0.1169 0.0432 -0.0230 0.0097 -0.0067 712 ALA A OXT 68 O O . HOH B . ? 0.3151 0.4474 0.2770 0.0616 -0.0605 -0.0594 801 HOH A O 69 O O . HOH B . ? 0.3194 0.3150 0.3303 0.1805 -0.0493 0.0197 802 HOH A O 70 O O . HOH B . ? 0.1481 0.1411 0.0786 -0.0029 0.0436 0.0383 803 HOH A O #