data_6MW1 # _entry.id 6MW1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.314 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6MW1 WWPDB D_1000237718 # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB 'linear version of this tetrapeptide' 6MVZ unspecified PDB 'linear version of this tetrapeptide with terminal D-Phe' 6MW0 unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6MW1 _pdbx_database_status.recvd_initial_deposition_date 2018-10-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Cameron, A.J.' 1 0000-0003-0680-6921 'Harris, P.W.R.' 2 0000-0002-2579-4543 'Brimble, M.A.' 3 0000-0002-7086-4096 'Squire, C.J.' 4 0000-0001-9212-0461 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Org.Biomol.Chem. _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1477-0539 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 17 _citation.language ? _citation.page_first 3902 _citation.page_last 3913 _citation.title 'Investigations of the key macrolactamisation step in the synthesis of cyclic tetrapeptide pseudoxylallemycin A.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1039/c9ob00227h _citation.pdbx_database_id_PubMed 30941386 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cameron, A.J.' 1 ? primary 'Squire, C.J.' 2 ? primary 'Gerenton, A.' 3 ? primary 'Stubbing, L.A.' 4 ? primary 'Harris, P.W.R.' 5 ? primary 'Brimble, M.A.' 6 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6MW1 _cell.details ? _cell.formula_units_Z ? _cell.length_a 9.633 _cell.length_a_esd ? _cell.length_b 12.706 _cell.length_b_esd ? _cell.length_c 26.415 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MW1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Pseudoxylallemycin A' 566.730 1 ? ? ? ? 2 water nat water 18.015 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(MLE)F(MLE)F' _entity_poly.pdbx_seq_one_letter_code_can LFLF _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MLE n 1 2 PHE n 1 3 MLE n 1 4 PHE n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 4 _pdbx_entity_src_syn.organism_scientific Xylaria _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 37991 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6MW1 _struct_ref.pdbx_db_accession 6MW1 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6MW1 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 4 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6MW1 _struct_ref_seq.db_align_beg 1001 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1004 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1001 _struct_ref_seq.pdbx_auth_seq_align_end 1004 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight HOH non-polymer . WATER ? 'H2 O' 18.015 MLE 'L-peptide linking' n N-METHYLLEUCINE ? 'C7 H15 N O2' 145.199 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6MW1 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.43 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 13.76 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method EVAPORATION _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'methanol, water' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-07-13 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.71075 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'AUSTRALIAN SYNCHROTRON BEAMLINE MX2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.71075 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline MX2 _diffrn_source.pdbx_synchrotron_site 'Australian Synchrotron' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6MW1 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 0.77 _reflns.d_resolution_low 26.42 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 4124 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.3 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 11.9 _reflns.pdbx_Rmerge_I_obs 0.078 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 27.0 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.024 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.993 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 0.77 _reflns_shell.d_res_low 0.79 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 19.6 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 279 _reflns_shell.percent_possible_all 91.7 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.141 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 11.8 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.043 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.992 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details 'Full least squares refinement in SHELXL with anisotropic atoms and riding hydrogens.' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6MW1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 0.77 _refine.ls_d_res_low 26.42 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 4124 _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 100 _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.0437 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method NONE _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 40 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 1 _refine_hist.number_atoms_total 41 _refine_hist.d_res_high 0.77 _refine_hist.d_res_low 26.42 # _struct.entry_id 6MW1 _struct.title 'cyclo-Mle-Phe-Mle-Phe. Pseudoxylallemycin A.' _struct.pdbx_descriptor 'Pseudoxylallemycin A' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6MW1 _struct_keywords.text 'tetrapeptide, cyclic peptide, N-methyl leucine, pseudoxylallemycin A, ANTIBIOTIC' _struct_keywords.pdbx_keywords ANTIBIOTIC # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A MLE 1 N ? ? ? 1_555 A PHE 4 C ? ? A MLE 1001 A PHE 1004 1_555 ? ? ? ? ? ? ? 1.366 ? covale2 covale both ? A MLE 1 C ? ? ? 1_555 A PHE 2 N ? ? A MLE 1001 A PHE 1002 1_555 ? ? ? ? ? ? ? 1.353 ? covale3 covale both ? A PHE 2 C ? ? ? 1_555 A MLE 3 N ? ? A PHE 1002 A MLE 1003 1_555 ? ? ? ? ? ? ? 1.359 ? covale4 covale both ? A MLE 3 C ? ? ? 1_555 A PHE 4 N ? ? A MLE 1003 A PHE 1004 1_555 ? ? ? ? ? ? ? 1.347 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PHE _struct_mon_prot_cis.label_seq_id 2 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PHE _struct_mon_prot_cis.auth_seq_id 1002 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 MLE _struct_mon_prot_cis.pdbx_label_seq_id_2 3 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 MLE _struct_mon_prot_cis.pdbx_auth_seq_id_2 1003 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 8.51 # _atom_sites.entry_id 6MW1 _atom_sites.fract_transf_matrix[1][1] 0.103810 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.078703 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.037857 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num HETATM 1 N N . MLE A 1 1 ? 0.815 3.319 16.432 1.000 1.10 ? 1001 MLE A N 1 HETATM 2 C CN . MLE A 1 1 ? 0.568 1.887 16.207 1.000 1.72 ? 1001 MLE A CN 1 HETATM 3 C CA . MLE A 1 1 ? 1.515 3.711 17.665 1.000 0.94 ? 1001 MLE A CA 1 HETATM 4 C CB . MLE A 1 1 ? 0.894 3.081 18.921 1.000 1.25 ? 1001 MLE A CB 1 HETATM 5 C CG . MLE A 1 1 ? -0.445 3.726 19.321 1.000 1.29 ? 1001 MLE A CG 1 HETATM 6 C CD1 . MLE A 1 1 ? -1.182 2.835 20.317 1.000 1.89 ? 1001 MLE A CD1 1 HETATM 7 C CD2 . MLE A 1 1 ? -0.231 5.123 19.925 1.000 1.94 ? 1001 MLE A CD2 1 HETATM 8 C C . MLE A 1 1 ? 3.047 3.531 17.609 1.000 0.99 ? 1001 MLE A C 1 HETATM 9 O O . MLE A 1 1 ? 3.714 3.658 18.628 1.000 1.56 ? 1001 MLE A O 1 ATOM 10 N N . PHE A 1 2 ? 3.587 3.362 16.380 1.000 0.88 ? 1002 PHE A N 1 ATOM 11 C CA . PHE A 1 2 ? 5.018 3.502 16.131 1.000 0.90 ? 1002 PHE A CA 1 ATOM 12 C C . PHE A 1 2 ? 5.215 4.568 15.015 1.000 0.95 ? 1002 PHE A C 1 ATOM 13 O O . PHE A 1 2 ? 5.692 4.251 13.923 1.000 1.40 ? 1002 PHE A O 1 ATOM 14 C CB . PHE A 1 2 ? 5.649 2.160 15.706 1.000 1.23 ? 1002 PHE A CB 1 ATOM 15 C CG . PHE A 1 2 ? 5.337 1.074 16.720 1.000 1.25 ? 1002 PHE A CG 1 ATOM 16 C CD1 . PHE A 1 2 ? 6.039 0.994 17.930 1.000 1.72 ? 1002 PHE A CD1 1 ATOM 17 C CD2 . PHE A 1 2 ? 4.296 0.171 16.504 1.000 1.66 ? 1002 PHE A CD2 1 ATOM 18 C CE1 . PHE A 1 2 ? 5.711 0.047 18.888 1.000 2.10 ? 1002 PHE A CE1 1 ATOM 19 C CE2 . PHE A 1 2 ? 3.960 -0.782 17.469 1.000 2.19 ? 1002 PHE A CE2 1 ATOM 20 C CZ . PHE A 1 2 ? 4.668 -0.839 18.660 1.000 2.04 ? 1002 PHE A CZ 1 HETATM 21 N N . MLE A 1 3 ? 4.781 5.839 15.223 1.000 0.97 ? 1003 MLE A N 1 HETATM 22 C CN . MLE A 1 3 ? 4.793 6.715 14.044 1.000 1.44 ? 1003 MLE A CN 1 HETATM 23 C CA . MLE A 1 3 ? 4.283 6.367 16.498 1.000 0.93 ? 1003 MLE A CA 1 HETATM 24 C CB . MLE A 1 3 ? 4.828 7.770 16.840 1.000 1.20 ? 1003 MLE A CB 1 HETATM 25 C CG . MLE A 1 3 ? 6.362 7.905 16.845 1.000 1.36 ? 1003 MLE A CG 1 HETATM 26 C CD1 . MLE A 1 3 ? 7.018 6.938 17.818 1.000 2.10 ? 1003 MLE A CD1 1 HETATM 27 C CD2 . MLE A 1 3 ? 6.724 9.359 17.198 1.000 1.96 ? 1003 MLE A CD2 1 HETATM 28 C C . MLE A 1 3 ? 2.738 6.407 16.590 1.000 0.89 ? 1003 MLE A C 1 HETATM 29 O O . MLE A 1 3 ? 2.211 6.894 17.585 1.000 1.24 ? 1003 MLE A O 1 ATOM 30 N N . PHE A 1 4 ? 2.052 5.832 15.583 1.000 0.97 ? 1004 PHE A N 1 ATOM 31 C CA . PHE A 1 4 ? 0.596 5.692 15.629 1.000 1.05 ? 1004 PHE A CA 1 ATOM 32 C C . PHE A 1 4 ? 0.205 4.192 15.577 1.000 1.20 ? 1004 PHE A C 1 ATOM 33 O O . PHE A 1 4 ? -0.607 3.804 14.734 1.000 2.00 ? 1004 PHE A O 1 ATOM 34 C CB . PHE A 1 4 ? -0.056 6.463 14.461 1.000 1.52 ? 1004 PHE A CB 1 ATOM 35 C CG . PHE A 1 4 ? 0.594 7.820 14.297 1.000 1.63 ? 1004 PHE A CG 1 ATOM 36 C CD1 . PHE A 1 4 ? 0.503 8.781 15.309 1.000 2.21 ? 1004 PHE A CD1 1 ATOM 37 C CD2 . PHE A 1 4 ? 1.403 8.098 13.196 1.000 2.55 ? 1004 PHE A CD2 1 ATOM 38 C CE1 . PHE A 1 4 ? 1.241 9.961 15.230 1.000 3.31 ? 1004 PHE A CE1 1 ATOM 39 C CE2 . PHE A 1 4 ? 2.146 9.276 13.125 1.000 3.62 ? 1004 PHE A CE2 1 ATOM 40 C CZ . PHE A 1 4 ? 2.085 10.196 14.152 1.000 3.75 ? 1004 PHE A CZ 1 HETATM 41 O O . HOH B 2 . ? 7.494 2.549 12.771 1.000 1.49 ? 2001 HOH A O 1 # loop_ _atom_site_anisotrop.id _atom_site_anisotrop.type_symbol _atom_site_anisotrop.pdbx_label_atom_id _atom_site_anisotrop.pdbx_label_alt_id _atom_site_anisotrop.pdbx_label_comp_id _atom_site_anisotrop.pdbx_label_asym_id _atom_site_anisotrop.pdbx_label_seq_id _atom_site_anisotrop.pdbx_PDB_ins_code _atom_site_anisotrop.U[1][1] _atom_site_anisotrop.U[2][2] _atom_site_anisotrop.U[3][3] _atom_site_anisotrop.U[1][2] _atom_site_anisotrop.U[1][3] _atom_site_anisotrop.U[2][3] _atom_site_anisotrop.pdbx_auth_seq_id _atom_site_anisotrop.pdbx_auth_comp_id _atom_site_anisotrop.pdbx_auth_asym_id _atom_site_anisotrop.pdbx_auth_atom_id 1 N N . MLE A 1 ? 0.0160 0.0125 0.0107 -0.0002 -0.0013 -0.0045 1001 MLE A N 2 C CN . MLE A 1 ? 0.0263 0.0138 0.0214 -0.0037 0.0003 -0.0073 1001 MLE A CN 3 C CA . MLE A 1 ? 0.0146 0.0128 0.0062 0.0012 -0.0007 -0.0015 1001 MLE A CA 4 C CB . MLE A 1 ? 0.0190 0.0141 0.0114 0.0020 0.0018 0.0031 1001 MLE A CB 5 C CG . MLE A 1 ? 0.0165 0.0185 0.0112 -0.0008 0.0016 0.0044 1001 MLE A CG 6 C CD1 . MLE A 1 ? 0.0232 0.0289 0.0156 -0.0063 0.0057 0.0090 1001 MLE A CD1 7 C CD2 . MLE A 1 ? 0.0308 0.0182 0.0205 0.0040 0.0098 0.0004 1001 MLE A CD2 8 C C . MLE A 1 ? 0.0162 0.0092 0.0097 0.0008 -0.0014 -0.0020 1001 MLE A C 9 O O . MLE A 1 ? 0.0180 0.0288 0.0091 0.0030 -0.0021 -0.0035 1001 MLE A O 10 N N . PHE A 2 ? 0.0104 0.0136 0.0074 0.0015 -0.0014 -0.0026 1002 PHE A N 11 C CA . PHE A 2 ? 0.0119 0.0118 0.0085 0.0030 0.0000 -0.0031 1002 PHE A CA 12 C C . PHE A 2 ? 0.0095 0.0150 0.0092 0.0027 -0.0012 -0.0034 1002 PHE A C 13 O O . PHE A 2 ? 0.0193 0.0201 0.0105 0.0059 0.0032 -0.0024 1002 PHE A O 14 C CB . PHE A 2 ? 0.0184 0.0139 0.0116 0.0052 0.0022 -0.0032 1002 PHE A CB 15 C CG . PHE A 2 ? 0.0196 0.0134 0.0115 0.0073 -0.0005 -0.0034 1002 PHE A CG 16 C CD1 . PHE A 2 ? 0.0249 0.0188 0.0176 0.0040 -0.0058 -0.0026 1002 PHE A CD1 17 C CD2 . PHE A 2 ? 0.0246 0.0187 0.0160 0.0016 -0.0050 0.0006 1002 PHE A CD2 18 C CE1 . PHE A 2 ? 0.0340 0.0266 0.0146 0.0080 -0.0069 0.0008 1002 PHE A CE1 19 C CE2 . PHE A 2 ? 0.0303 0.0210 0.0269 -0.0003 -0.0036 0.0033 1002 PHE A CE2 20 C CZ . PHE A 2 ? 0.0327 0.0199 0.0204 0.0087 0.0035 0.0052 1002 PHE A CZ 21 N N . MLE A 3 ? 0.0148 0.0122 0.0077 0.0020 -0.0002 -0.0005 1003 MLE A N 22 C CN . MLE A 3 ? 0.0250 0.0152 0.0113 0.0006 0.0016 0.0022 1003 MLE A CN 23 C CA . MLE A 3 ? 0.0144 0.0110 0.0078 0.0013 0.0002 -0.0036 1003 MLE A CA 24 C CB . MLE A 3 ? 0.0165 0.0108 0.0157 0.0025 -0.0020 -0.0035 1003 MLE A CB 25 C CG . MLE A 3 ? 0.0167 0.0149 0.0171 0.0013 -0.0007 -0.0041 1003 MLE A CG 26 C CD1 . MLE A 3 ? 0.0177 0.0242 0.0332 0.0017 -0.0082 0.0015 1003 MLE A CD1 27 C CD2 . MLE A 3 ? 0.0197 0.0202 0.0301 -0.0036 -0.0018 -0.0074 1003 MLE A CD2 28 C C . MLE A 3 ? 0.0158 0.0094 0.0065 0.0022 -0.0001 -0.0002 1003 MLE A C 29 O O . MLE A 3 ? 0.0173 0.0173 0.0096 0.0034 0.0006 -0.0048 1003 MLE A O 30 N N . PHE A 4 ? 0.0128 0.0150 0.0068 0.0050 -0.0007 -0.0024 1004 PHE A N 31 C CA . PHE A 4 ? 0.0129 0.0165 0.0081 0.0030 -0.0019 -0.0013 1004 PHE A CA 32 C C . PHE A 4 ? 0.0125 0.0206 0.0096 0.0025 -0.0010 -0.0055 1004 PHE A C 33 O O . PHE A 4 ? 0.0200 0.0300 0.0214 -0.0025 -0.0098 -0.0082 1004 PHE A O 34 C CB . PHE A 4 ? 0.0155 0.0278 0.0109 0.0059 -0.0049 -0.0001 1004 PHE A CB 35 C CG . PHE A 4 ? 0.0206 0.0229 0.0146 0.0067 -0.0072 0.0038 1004 PHE A CG 36 C CD1 . PHE A 4 ? 0.0330 0.0265 0.0195 0.0049 -0.0063 0.0009 1004 PHE A CD1 37 C CD2 . PHE A 4 ? 0.0361 0.0335 0.0215 0.0098 0.0020 0.0109 1004 PHE A CD2 38 C CE1 . PHE A 4 ? 0.0572 0.0249 0.0361 -0.0009 -0.0220 0.0023 1004 PHE A CE1 39 C CE2 . PHE A 4 ? 0.0441 0.0452 0.0401 0.0027 0.0026 0.0290 1004 PHE A CE2 40 C CZ . PHE A 4 ? 0.0498 0.0312 0.0528 -0.0070 -0.0246 0.0245 1004 PHE A CZ 41 O O . HOH B . ? 0.0138 0.0270 0.0126 -0.0001 0.0007 -0.0106 2001 HOH A O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MLE 1 1001 1001 MLE MLE A . n A 1 2 PHE 2 1002 1002 PHE PHE A . n A 1 3 MLE 3 1003 1003 MLE MLE A . n A 1 4 PHE 4 1004 1004 PHE PHE A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id HOH _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 2001 _pdbx_nonpoly_scheme.auth_seq_num 2001 _pdbx_nonpoly_scheme.pdb_mon_id HOH _pdbx_nonpoly_scheme.auth_mon_id HOH _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_molecule_features.prd_id PRD_002333 _pdbx_molecule_features.name 'Pseudoxylallemycin A' _pdbx_molecule_features.type 'Cyclic peptide' _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_002333 _pdbx_molecule.asym_id A # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 740 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2019-09-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? SHELXL ? ? ? . 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXS ? ? ? . 4 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #