data_PRDCC_000216 # _chem_comp.id PRD_000216 _chem_comp.name LEUPEPTIN _chem_comp.formula "C20 H41 N6 O5" _chem_comp.formula_weight 445.577 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_pcm ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_000216 C1 C1 C 0 1 N N N 37.827 5.176 67.375 5.080 1.793 -0.893 ACE 1 C polymer 1 1 1 ? ? ? PRD_000216 O1 O1 O 0 1 N N N 38.225 4.986 68.549 4.136 2.472 -0.546 ACE 1 O polymer 1 1 2 ? ? ? PRD_000216 C2 C2 C 0 1 N N N 36.378 5.047 66.976 6.141 2.379 -1.788 ACE 1 CH3 polymer 1 1 3 ? ? ? PRD_000216 N1 N1 N 0 1 N N N 38.623 5.467 66.348 5.182 0.516 -0.473 LEU 2 N polymer 1 1 4 ? ? ? PRD_000216 C3 C3 C 0 1 N N S 40.039 5.705 66.520 4.154 -0.052 0.402 LEU 2 CA polymer 1 1 5 ? ? ? PRD_000216 C4 C4 C 0 1 N N N 40.362 7.041 65.877 2.818 -0.003 -0.295 LEU 2 C polymer 1 1 6 ? ? ? PRD_000216 O2 O2 O 0 1 N N N 40.586 8.030 66.584 2.646 0.758 -1.223 LEU 2 O polymer 1 1 7 ? ? ? PRD_000216 C5 C5 C 0 1 N N N 40.864 4.560 65.942 4.082 0.759 1.698 LEU 2 CB polymer 1 1 8 ? ? ? PRD_000216 C6 C6 C 0 1 N N N 40.982 3.432 66.982 5.396 0.608 2.467 LEU 2 CG polymer 1 1 9 ? ? ? PRD_000216 C7 C7 C 0 1 N N N 41.343 2.133 66.294 5.372 1.515 3.699 LEU 2 CD1 polymer 1 1 10 ? ? ? PRD_000216 C8 C8 C 0 1 N N N 42.009 3.829 68.042 5.564 -0.847 2.908 LEU 2 CD2 polymer 1 1 11 ? ? ? PRD_000216 N2 N2 N 0 1 N N N 40.377 7.105 64.547 1.816 -0.807 0.112 LEU 3 N polymer 1 1 12 ? ? ? PRD_000216 C9 C9 C 0 1 N N S 40.631 8.394 63.885 0.518 -0.760 -0.566 LEU 3 CA polymer 1 1 13 ? ? ? PRD_000216 C10 C10 C 0 1 N N N 39.375 9.254 64.165 -0.559 -1.230 0.378 LEU 3 C polymer 1 1 14 ? ? ? PRD_000216 O3 O3 O 0 1 N N N 38.266 8.723 64.256 -0.270 -1.571 1.506 LEU 3 O polymer 1 1 15 ? ? ? PRD_000216 C11 C11 C 0 1 N N N 40.791 8.219 62.376 0.552 -1.670 -1.795 LEU 3 CB polymer 1 1 16 ? ? ? PRD_000216 C12 C12 C 0 1 N N N 42.061 7.548 61.893 1.558 -1.122 -2.809 LEU 3 CG polymer 1 1 17 ? ? ? PRD_000216 C13 C13 C 0 1 N N N 42.004 7.443 60.357 1.683 -2.096 -3.981 LEU 3 CD1 polymer 1 1 18 ? ? ? PRD_000216 C14 C14 C 0 1 N N N 43.268 8.355 62.339 1.074 0.236 -3.323 LEU 3 CD2 polymer 1 1 19 ? ? ? PRD_000216 N3 N3 N 0 1 N N N 39.570 10.557 64.342 -1.842 -1.272 -0.031 AR7 4 N polymer 1 1 20 ? ? ? PRD_000216 C15 C15 C 0 1 N N S 38.469 11.445 64.612 -2.889 -1.729 0.887 AR7 4 CA polymer 1 1 21 ? ? ? PRD_000216 C16 C16 C 0 1 N N N 38.166 12.402 63.435 -2.978 -3.256 0.840 AR7 4 C polymer 1 1 22 ? ? ? PRD_000216 O4 O4 O 0 1 N N N 37.956 11.657 62.243 -3.999 -3.701 1.734 AR7 4 O polymer 1 1 23 ? ? ? PRD_000216 C17 C17 C 0 1 N N N 38.745 12.227 65.893 -4.232 -1.127 0.468 AR7 4 CB polymer 1 1 24 ? ? ? PRD_000216 C18 C18 C 0 1 N N N 38.754 11.347 67.122 -4.183 0.393 0.635 AR7 4 CG polymer 1 1 25 ? ? ? PRD_000216 C19 C19 C 0 1 N N N 39.196 12.143 68.346 -5.526 0.995 0.216 AR7 4 CD polymer 1 1 26 ? ? ? PRD_000216 N4 N4 N 0 1 N N N 39.133 11.315 69.552 -5.480 2.451 0.375 AR7 4 NE polymer 1 1 27 ? ? ? PRD_000216 C20 C20 C 0 1 N N N 39.362 11.766 70.779 -6.574 3.208 0.061 AR7 4 CZ polymer 1 1 28 ? ? ? PRD_000216 N5 N5 N 1 1 N N N 39.667 13.045 70.978 -7.682 2.623 -0.390 AR7 4 NH1 polymer 1 1 29 ? ? ? PRD_000216 N6 N6 N 0 1 N N N 39.303 10.924 71.802 -6.532 4.532 0.205 AR7 4 NH2 polymer 1 1 30 ? ? ? PRD_000216 O5 O5 O 0 1 N Y N ? ? ? -3.294 -3.674 -0.490 AR7 4 OXT polymer 1 1 31 ? ? ? PRD_000216 H1 H1 H 0 1 N N N 35.778 4.772 67.856 5.891 3.416 -2.016 ACE 1 H1 polymer 1 1 32 ? ? ? PRD_000216 H2 H2 H 0 1 N N N 36.022 6.007 66.575 7.105 2.342 -1.281 ACE 1 H2 polymer 1 1 33 ? ? ? PRD_000216 H3 H3 H 0 1 N N N 36.278 4.268 66.206 6.194 1.806 -2.713 ACE 1 H3 polymer 1 1 34 ? ? ? PRD_000216 H4 H4 H 0 1 N N N 38.230 5.523 65.430 5.937 -0.026 -0.750 LEU 2 H polymer 1 1 35 ? ? ? PRD_000216 H5 H5 H 0 1 N N N 40.263 5.779 67.594 4.405 -1.087 0.634 LEU 2 HA polymer 1 1 36 ? ? ? PRD_000216 H6 H6 H 0 1 N N N 40.371 4.174 65.038 3.918 1.810 1.460 LEU 2 HB2 polymer 1 1 37 ? ? ? PRD_000216 H7 H7 H 0 1 N N N 41.869 4.927 65.684 3.258 0.392 2.310 LEU 2 HB3 polymer 1 1 38 ? ? ? PRD_000216 H8 H8 H 0 1 N N N 40.005 3.310 67.472 6.228 0.891 1.823 LEU 2 HG polymer 1 1 39 ? ? ? PRD_000216 H9 H9 H 0 0 N N N 41.426 1.331 67.043 4.540 1.232 4.343 LEU 2 HD11 polymer 1 1 40 ? ? ? PRD_000216 H10 H10 H 0 0 N N N 40.561 1.874 65.565 6.309 1.408 4.247 LEU 2 HD12 polymer 1 1 41 ? ? ? PRD_000216 H11 H11 H 0 0 N N N 42.305 2.249 65.773 5.252 2.552 3.384 LEU 2 HD13 polymer 1 1 42 ? ? ? PRD_000216 H12 H12 H 0 0 N N N 42.097 3.025 68.788 4.732 -1.130 3.553 LEU 2 HD21 polymer 1 1 43 ? ? ? PRD_000216 H13 H13 H 0 0 N N N 42.986 3.993 67.563 5.581 -1.493 2.031 LEU 2 HD22 polymer 1 1 44 ? ? ? PRD_000216 H14 H14 H 0 0 N N N 41.684 4.755 68.538 6.500 -0.954 3.456 LEU 2 HD23 polymer 1 1 45 ? ? ? PRD_000216 H15 H15 H 0 1 N N N 40.217 6.282 64.002 1.954 -1.416 0.854 LEU 3 H polymer 1 1 46 ? ? ? PRD_000216 H16 H16 H 0 1 N N N 41.521 8.884 64.306 0.307 0.263 -0.877 LEU 3 HA polymer 1 1 47 ? ? ? PRD_000216 H17 H17 H 0 1 N N N 39.942 7.618 62.020 0.849 -2.675 -1.495 LEU 3 HB2 polymer 1 1 48 ? ? ? PRD_000216 H18 H18 H 0 1 N N N 40.750 9.219 61.920 -0.439 -1.705 -2.248 LEU 3 HB3 polymer 1 1 49 ? ? ? PRD_000216 H19 H19 H 0 1 N N N 42.123 6.536 62.319 2.529 -1.003 -2.329 LEU 3 HG polymer 1 1 50 ? ? ? PRD_000216 H20 H20 H 0 0 N N N 42.919 6.958 59.988 0.712 -2.214 -4.461 LEU 3 HD11 polymer 1 1 51 ? ? ? PRD_000216 H21 H21 H 0 0 N N N 41.128 6.846 60.063 2.400 -1.705 -4.704 LEU 3 HD12 polymer 1 1 52 ? ? ? PRD_000216 H22 H22 H 0 0 N N N 41.923 8.451 59.923 2.027 -3.063 -3.615 LEU 3 HD13 polymer 1 1 53 ? ? ? PRD_000216 H23 H23 H 0 0 N N N 44.188 7.865 61.987 0.103 0.118 -3.803 LEU 3 HD21 polymer 1 1 54 ? ? ? PRD_000216 H24 H24 H 0 0 N N N 43.208 9.369 61.916 0.985 0.930 -2.487 LEU 3 HD22 polymer 1 1 55 ? ? ? PRD_000216 H25 H25 H 0 0 N N N 43.283 8.416 63.437 1.791 0.627 -4.045 LEU 3 HD23 polymer 1 1 56 ? ? ? PRD_000216 H26 H26 H 0 1 N N N 40.497 10.927 64.287 -2.073 -1.000 -0.933 AR7 4 H polymer 1 1 57 ? ? ? PRD_000216 H27 H27 H 0 1 N N N 37.566 10.841 64.782 -2.648 -1.410 1.901 AR7 4 HA polymer 1 1 58 ? ? ? PRD_000216 H28 H28 H 0 1 N N N 37.545 13.284 63.648 -2.021 -3.684 1.137 AR7 4 HF polymer 1 1 59 ? ? ? PRD_000216 H29 H29 H 0 1 N Y N 37.771 12.252 61.526 -4.879 -3.358 1.529 AR7 4 H1 polymer 1 1 60 ? ? ? PRD_000216 H30 H30 H 0 1 N N N 39.726 12.716 65.803 -4.431 -1.372 -0.575 AR7 4 HB1 polymer 1 1 61 ? ? ? PRD_000216 H31 H31 H 0 1 N N N 37.964 12.992 66.014 -5.024 -1.536 1.095 AR7 4 HB2 polymer 1 1 62 ? ? ? PRD_000216 H32 H32 H 0 1 N N N 37.741 10.953 67.293 -3.984 0.638 1.678 AR7 4 HG1 polymer 1 1 63 ? ? ? PRD_000216 H33 H33 H 0 1 N N N 39.451 10.511 66.963 -3.391 0.802 0.007 AR7 4 HG2 polymer 1 1 64 ? ? ? PRD_000216 H34 H34 H 0 1 N N N 40.230 12.488 68.198 -5.726 0.750 -0.827 AR7 4 HD1 polymer 1 1 65 ? ? ? PRD_000216 H35 H35 H 0 1 N N N 38.534 13.012 68.470 -6.319 0.586 0.843 AR7 4 HD2 polymer 1 1 66 ? ? ? PRD_000216 H36 H36 H 0 1 N N N 38.903 10.348 69.444 -4.673 2.877 0.704 AR7 4 HNE polymer 1 1 67 ? ? ? PRD_000216 H37 H37 H 0 0 N N N 39.853 13.377 71.903 -7.713 1.659 -0.496 AR7 4 HN11 polymer 1 1 68 ? ? ? PRD_000216 H38 H38 H 0 0 N N N 39.488 11.250 72.729 -5.725 4.958 0.534 AR7 4 HN21 polymer 1 1 69 ? ? ? PRD_000216 H39 H39 H 0 0 N N N 39.073 9.963 71.646 -7.308 5.069 -0.018 AR7 4 HN22 polymer 1 1 70 ? ? ? PRD_000216 H40 H40 H 0 1 N Y N ? ? ? -3.366 -4.632 -0.594 AR7 4 HXT polymer 1 1 71 ? ? ? PRD_000216 H41 H41 H 0 0 N N N 39.710 13.675 70.203 -8.459 3.160 -0.613 AR7 4 HN12 polymer 1 1 72 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_000216 C1 O1 DOUB N N 1 PRD_000216 C1 C2 SING N N 2 PRD_000216 C2 H1 SING N N 3 PRD_000216 C2 H2 SING N N 4 PRD_000216 C2 H3 SING N N 5 PRD_000216 N1 C3 SING N N 6 PRD_000216 N1 H4 SING N N 7 PRD_000216 C3 C4 SING N N 8 PRD_000216 C3 C5 SING N N 9 PRD_000216 C3 H5 SING N N 10 PRD_000216 C4 O2 DOUB N N 11 PRD_000216 C5 C6 SING N N 12 PRD_000216 C5 H6 SING N N 13 PRD_000216 C5 H7 SING N N 14 PRD_000216 C6 C7 SING N N 15 PRD_000216 C6 C8 SING N N 16 PRD_000216 C6 H8 SING N N 17 PRD_000216 C7 H9 SING N N 18 PRD_000216 C7 H10 SING N N 19 PRD_000216 C7 H11 SING N N 20 PRD_000216 C8 H12 SING N N 21 PRD_000216 C8 H13 SING N N 22 PRD_000216 C8 H14 SING N N 23 PRD_000216 N2 C9 SING N N 24 PRD_000216 N2 H15 SING N N 25 PRD_000216 C9 C10 SING N N 26 PRD_000216 C9 C11 SING N N 27 PRD_000216 C9 H16 SING N N 28 PRD_000216 C10 O3 DOUB N N 29 PRD_000216 C11 C12 SING N N 30 PRD_000216 C11 H17 SING N N 31 PRD_000216 C11 H18 SING N N 32 PRD_000216 C12 C13 SING N N 33 PRD_000216 C12 C14 SING N N 34 PRD_000216 C12 H19 SING N N 35 PRD_000216 C13 H20 SING N N 36 PRD_000216 C13 H21 SING N N 37 PRD_000216 C13 H22 SING N N 38 PRD_000216 C14 H23 SING N N 39 PRD_000216 C14 H24 SING N N 40 PRD_000216 C14 H25 SING N N 41 PRD_000216 N3 C15 SING N N 42 PRD_000216 N3 H26 SING N N 43 PRD_000216 C15 C16 SING N N 44 PRD_000216 C15 C17 SING N N 45 PRD_000216 C15 H27 SING N N 46 PRD_000216 C16 O4 SING N N 47 PRD_000216 C16 O5 SING N N 48 PRD_000216 C16 H28 SING N N 49 PRD_000216 O4 H29 SING N N 50 PRD_000216 C17 C18 SING N N 51 PRD_000216 C17 H30 SING N N 52 PRD_000216 C17 H31 SING N N 53 PRD_000216 C18 C19 SING N N 54 PRD_000216 C18 H32 SING N N 55 PRD_000216 C18 H33 SING N N 56 PRD_000216 C19 N4 SING N N 57 PRD_000216 C19 H34 SING N N 58 PRD_000216 C19 H35 SING N N 59 PRD_000216 N4 C20 SING N N 60 PRD_000216 N4 H36 SING N N 61 PRD_000216 C20 N5 DOUB N N 62 PRD_000216 C20 N6 SING N N 63 PRD_000216 N5 H37 SING N N 64 PRD_000216 N6 H38 SING N N 65 PRD_000216 N6 H39 SING N N 66 PRD_000216 O5 H40 SING N N 67 PRD_000216 N5 H41 SING N N 68 PRD_000216 C1 N1 SING N N 69 PRD_000216 C10 N3 SING N N 70 PRD_000216 C4 N2 SING N N 71 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_000216 SMILES ACDLabs 12.01 "O=C(NC(CCCNC(=[NH2+])/N)C(O)O)C(NC(=O)C(NC(=O)C)CC(C)C)CC(C)C" PRD_000216 InChI InChI 1.03 "InChI=1S/C20H40N6O5/c1-11(2)9-15(24-13(5)27)17(28)26-16(10-12(3)4)18(29)25-14(19(30)31)7-6-8-23-20(21)22/h11-12,14-16,19,30-31H,6-10H2,1-5H3,(H,24,27)(H,25,29)(H,26,28)(H4,21,22,23)/p+1" PRD_000216 InChIKey InChI 1.03 RBEQQMKHJLRJKG-UHFFFAOYSA-O PRD_000216 SMILES_CANONICAL CACTVS 3.370 "CC(C)C[C@H](NC(C)=O)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCCNC(N)=[NH2+])C(O)O" PRD_000216 SMILES CACTVS 3.370 "CC(C)C[CH](NC(C)=O)C(=O)N[CH](CC(C)C)C(=O)N[CH](CCCNC(N)=[NH2+])C(O)O" PRD_000216 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)C[C@@H](C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCCNC(=[NH2+])N)C(O)O)NC(=O)C" PRD_000216 SMILES "OpenEye OEToolkits" 1.7.6 "CC(C)CC(C(=O)NC(CC(C)C)C(=O)NC(CCCNC(=[NH2+])N)C(O)O)NC(=O)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD_000216 "SYSTEMATIC NAME" ACDLabs 12.01 "N-acetyl-L-leucyl-N-[(2S)-5-{[amino(iminio)methyl]amino}-1,1-dihydroxypentan-2-yl]-L-leucinamide" PRD_000216 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[[(4S)-4-[[(2S)-2-[[(2S)-2-acetamido-4-methyl-pentanoyl]amino]-4-methyl-pentanoyl]amino]-5,5-bis(oxidanyl)pentyl]amino]-azanyl-methylidene]azanium" #