data_PRDCC_000315 # _chem_comp.id PRD_000315 _chem_comp.name O-methylsuccinyl-alanyl-alanyl-prolyl-borophenylalanine _chem_comp.formula "C24 H35 B N4 O8" _chem_comp.formula_weight 518.368 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_000315 C1 C1 C 0 1 N N N ? ? ? 6.536 -0.809 0.184 MSU 1 C1 polymer 1 1 1 ? ? ? PRD_000315 O1 O1 O 0 1 N N N ? ? ? 6.332 -2.004 0.166 MSU 1 O1 polymer 1 1 2 ? ? ? PRD_000315 C2 C2 C 0 1 N N N ? ? ? 7.942 -0.282 0.059 MSU 1 C2 polymer 1 1 3 ? ? ? PRD_000315 C3 C3 C 0 1 N N N ? ? ? 8.915 -1.455 -0.078 MSU 1 C3 polymer 1 1 4 ? ? ? PRD_000315 C4 C4 C 0 1 N N N ? ? ? 10.322 -0.929 -0.204 MSU 1 C4 polymer 1 1 5 ? ? ? PRD_000315 O2 O2 O 0 1 N N N ? ? ? 10.525 0.262 -0.185 MSU 1 OT1 polymer 1 1 6 ? ? ? PRD_000315 O3 O3 O 0 1 N N N ? ? ? 11.349 -1.783 -0.336 MSU 1 OT2 polymer 1 1 7 ? ? ? PRD_000315 C5 C5 C 0 1 N N N ? ? ? 12.676 -1.206 -0.451 MSU 1 CT polymer 1 1 8 ? ? ? PRD_000315 N1 N1 N 0 1 N N N 13.967 41.848 18.339 5.504 0.049 0.312 ALA 2 N polymer 1 1 9 ? ? ? PRD_000315 C6 C6 C 0 1 N N S 14.645 40.698 17.769 4.136 -0.462 0.427 ALA 2 CA polymer 1 1 10 ? ? ? PRD_000315 C7 C7 C 0 1 N N N 13.757 39.549 18.204 3.165 0.588 -0.049 ALA 2 C polymer 1 1 11 ? ? ? PRD_000315 O4 O4 O 0 1 N N N 13.146 39.670 19.269 3.576 1.658 -0.445 ALA 2 O polymer 1 1 12 ? ? ? PRD_000315 C8 C8 C 0 1 N N N 16.039 40.474 18.360 3.841 -0.804 1.889 ALA 2 CB polymer 1 1 13 ? ? ? PRD_000315 N2 N2 N 0 1 N N N 13.629 38.513 17.396 1.841 0.338 -0.034 ALA 3 N polymer 1 1 14 ? ? ? PRD_000315 C9 C9 C 0 1 N N S 12.770 37.385 17.713 0.897 1.358 -0.496 ALA 3 CA polymer 1 1 15 ? ? ? PRD_000315 C10 C10 C 0 1 N N N 13.567 36.128 17.386 -0.443 1.134 0.154 ALA 3 C polymer 1 1 16 ? ? ? PRD_000315 O5 O5 O 0 1 N N N 14.441 36.235 16.511 -0.754 0.026 0.538 ALA 3 O polymer 1 1 17 ? ? ? PRD_000315 C11 C11 C 0 1 N N N 11.543 37.459 16.846 0.749 1.264 -2.016 ALA 3 CB polymer 1 1 18 ? ? ? PRD_000315 N3 N3 N 0 1 N N N 13.378 34.962 18.052 -1.297 2.165 0.310 PRO 4 N polymer 1 1 19 ? ? ? PRD_000315 C12 C12 C 0 1 N N S 14.103 33.711 17.790 -2.589 2.110 1.009 PRO 4 CA polymer 1 1 20 ? ? ? PRD_000315 C13 C13 C 0 1 N N N 13.888 33.235 16.351 -3.486 1.094 0.349 PRO 4 C polymer 1 1 21 ? ? ? PRD_000315 O6 O6 O 0 1 N N N 12.793 33.402 15.794 -3.091 0.472 -0.614 PRO 4 O polymer 1 1 22 ? ? ? PRD_000315 C14 C14 C 0 1 N N N 13.560 32.712 18.782 -3.224 3.513 0.911 PRO 4 CB polymer 1 1 23 ? ? ? PRD_000315 C15 C15 C 0 1 N N N 12.864 33.529 19.816 -2.515 4.129 -0.324 PRO 4 CG polymer 1 1 24 ? ? ? PRD_000315 C16 C16 C 0 1 N N N 12.292 34.683 18.988 -1.088 3.537 -0.188 PRO 4 CD polymer 1 1 25 ? ? ? PRD_000315 N4 N4 N 0 1 N N N 14.909 32.629 15.746 -4.727 0.877 0.829 B2F 5 N polymer 1 1 26 ? ? ? PRD_000315 C17 C17 C 0 1 N N R 14.865 32.124 14.394 -5.598 -0.110 0.187 B2F 5 CA polymer 1 1 27 ? ? ? PRD_000315 C18 C18 C 0 1 N N N 15.994 32.825 13.608 -6.270 -0.970 1.259 B2F 5 CB polymer 1 1 28 ? ? ? PRD_000315 C19 C19 C 0 1 Y N N 15.639 34.214 13.138 -7.167 -1.986 0.599 B2F 5 CG polymer 1 1 29 ? ? ? PRD_000315 C20 C20 C 0 1 Y N N 16.397 34.760 12.120 -6.666 -3.225 0.247 B2F 5 CD1 polymer 1 1 30 ? ? ? PRD_000315 C21 C21 C 0 1 Y N N 14.579 34.944 13.691 -8.492 -1.680 0.351 B2F 5 CD2 polymer 1 1 31 ? ? ? PRD_000315 C22 C22 C 0 1 Y N N 16.084 36.041 11.651 -7.488 -4.157 -0.358 B2F 5 CE1 polymer 1 1 32 ? ? ? PRD_000315 C23 C23 C 0 1 Y N N 14.270 36.216 13.226 -9.314 -2.612 -0.254 B2F 5 CE2 polymer 1 1 33 ? ? ? PRD_000315 C24 C24 C 0 1 Y N N 15.025 36.768 12.197 -8.812 -3.849 -0.611 B2F 5 CZ polymer 1 1 34 ? ? ? PRD_000315 B1 B1 B 0 1 N N N 14.989 30.569 14.380 -6.698 0.631 -0.654 B2F 5 B polymer 1 1 35 ? ? ? PRD_000315 O7 O7 O 0 1 N N N 14.818 30.157 13.012 -7.233 0.019 -1.818 B2F 5 O1 polymer 1 1 36 ? ? ? PRD_000315 O8 O8 O 0 1 N N N 13.804 30.095 14.999 -7.157 1.913 -0.250 B2F 5 O2 polymer 1 1 37 ? ? ? PRD_000315 H1 H1 H 0 1 N N N ? ? ? 8.015 0.355 -0.822 MSU 1 H21 polymer 1 1 38 ? ? ? PRD_000315 H2 H2 H 0 1 N N N ? ? ? 8.194 0.296 0.948 MSU 1 H22 polymer 1 1 39 ? ? ? PRD_000315 H3 H3 H 0 1 N N N ? ? ? 8.843 -2.092 0.803 MSU 1 H31 polymer 1 1 40 ? ? ? PRD_000315 H4 H4 H 0 1 N N N ? ? ? 8.663 -2.034 -0.967 MSU 1 H32 polymer 1 1 41 ? ? ? PRD_000315 H5 H5 H 0 1 N N N ? ? ? 12.896 -0.619 0.441 MSU 1 HT1 polymer 1 1 42 ? ? ? PRD_000315 H6 H6 H 0 1 N N N ? ? ? 13.412 -2.003 -0.552 MSU 1 HT2 polymer 1 1 43 ? ? ? PRD_000315 H7 H7 H 0 1 N N N ? ? ? 12.716 -0.561 -1.329 MSU 1 HT3 polymer 1 1 44 ? ? ? PRD_000315 H8 H8 H 0 1 N N N 13.872 42.751 18.759 5.667 1.005 0.327 ALA 2 H polymer 1 1 45 ? ? ? PRD_000315 H9 H9 H 0 1 N N N 14.696 40.758 16.672 4.030 -1.359 -0.184 ALA 2 HA polymer 1 1 46 ? ? ? PRD_000315 H10 H10 H 0 1 N N N 16.500 39.592 17.890 4.543 -1.563 2.233 ALA 2 HB1 polymer 1 1 47 ? ? ? PRD_000315 H11 H11 H 0 1 N N N 16.664 41.359 18.170 3.947 0.092 2.500 ALA 2 HB2 polymer 1 1 48 ? ? ? PRD_000315 H12 H12 H 0 1 N N N 15.955 40.310 19.444 2.824 -1.185 1.975 ALA 2 HB3 polymer 1 1 49 ? ? ? PRD_000315 H13 H13 H 0 1 N N N 14.141 38.504 16.537 1.513 -0.518 0.284 ALA 3 H polymer 1 1 50 ? ? ? PRD_000315 H14 H14 H 0 1 N N N 12.488 37.388 18.776 1.271 2.346 -0.228 ALA 3 HA polymer 1 1 51 ? ? ? PRD_000315 H15 H15 H 0 1 N N N 10.881 36.611 17.074 0.293 0.309 -2.278 ALA 3 HB1 polymer 1 1 52 ? ? ? PRD_000315 H16 H16 H 0 1 N N N 11.012 38.402 17.043 0.117 2.078 -2.371 ALA 3 HB2 polymer 1 1 53 ? ? ? PRD_000315 H17 H17 H 0 1 N N N 11.839 37.419 15.787 1.732 1.337 -2.482 ALA 3 HB3 polymer 1 1 54 ? ? ? PRD_000315 H18 H18 H 0 1 N N N 15.179 33.855 17.966 -2.434 1.843 2.054 PRO 4 HA polymer 1 1 55 ? ? ? PRD_000315 H19 H19 H 0 1 N N N 12.853 32.026 18.292 -4.299 3.439 0.741 PRO 4 HB2 polymer 1 1 56 ? ? ? PRD_000315 H20 H20 H 0 1 N N N 14.379 32.133 19.234 -3.013 4.095 1.808 PRO 4 HB3 polymer 1 1 57 ? ? ? PRD_000315 H21 H21 H 0 1 N N N 12.064 32.955 20.305 -2.990 3.805 -1.250 PRO 4 HG2 polymer 1 1 58 ? ? ? PRD_000315 H22 H22 H 0 1 N N N 13.570 33.895 20.576 -2.493 5.217 -0.258 PRO 4 HG3 polymer 1 1 59 ? ? ? PRD_000315 H23 H23 H 0 1 N N N 12.076 35.557 19.619 -0.501 4.114 0.527 PRO 4 HD2 polymer 1 1 60 ? ? ? PRD_000315 H24 H24 H 0 1 N N N 11.378 34.378 18.458 -0.592 3.517 -1.158 PRO 4 HD3 polymer 1 1 61 ? ? ? PRD_000315 H25 H25 H 0 1 N N N 15.759 32.517 16.261 -5.043 1.375 1.599 B2F 5 H polymer 1 1 62 ? ? ? PRD_000315 H26 H26 H 0 1 N N N 13.904 32.394 13.931 -5.005 -0.746 -0.470 B2F 5 HA polymer 1 1 63 ? ? ? PRD_000315 H27 H27 H 0 1 N N N 16.878 32.895 14.259 -5.507 -1.485 1.843 B2F 5 HB1 polymer 1 1 64 ? ? ? PRD_000315 H28 H28 H 0 1 N N N 16.235 32.212 12.727 -6.863 -0.335 1.917 B2F 5 HB2 polymer 1 1 65 ? ? ? PRD_000315 H29 H29 H 0 1 N N N 17.220 34.206 11.692 -5.631 -3.466 0.445 B2F 5 HD1 polymer 1 1 66 ? ? ? PRD_000315 H30 H30 H 0 1 N N N 13.994 34.512 14.490 -8.884 -0.714 0.631 B2F 5 HD2 polymer 1 1 67 ? ? ? PRD_000315 H31 H31 H 0 1 N N N 16.671 36.474 10.854 -7.096 -5.125 -0.634 B2F 5 HE1 polymer 1 1 68 ? ? ? PRD_000315 H32 H32 H 0 1 N N N 13.451 36.771 13.660 -10.350 -2.373 -0.448 B2F 5 HE2 polymer 1 1 69 ? ? ? PRD_000315 H33 H33 H 0 1 N N N 14.793 37.754 11.822 -9.454 -4.577 -1.084 B2F 5 HZ polymer 1 1 70 ? ? ? PRD_000315 H34 H34 H 0 1 N N N 14.886 29.211 12.955 -6.860 -0.851 -2.012 B2F 5 HO1 polymer 1 1 71 ? ? ? PRD_000315 H35 H35 H 0 1 N N N 13.817 29.145 15.023 -6.735 2.247 0.553 B2F 5 HO2 polymer 1 1 72 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_000315 C1 O1 DOUB N N 1 PRD_000315 C1 C2 SING N N 2 PRD_000315 C2 C3 SING N N 3 PRD_000315 C2 H1 SING N N 4 PRD_000315 C2 H2 SING N N 5 PRD_000315 C3 C4 SING N N 6 PRD_000315 C3 H3 SING N N 7 PRD_000315 C3 H4 SING N N 8 PRD_000315 C4 O2 DOUB N N 9 PRD_000315 C4 O3 SING N N 10 PRD_000315 O3 C5 SING N N 11 PRD_000315 C5 H5 SING N N 12 PRD_000315 C5 H6 SING N N 13 PRD_000315 C5 H7 SING N N 14 PRD_000315 N1 C6 SING N N 15 PRD_000315 N1 H8 SING N N 16 PRD_000315 C6 C7 SING N N 17 PRD_000315 C6 C8 SING N N 18 PRD_000315 C6 H9 SING N N 19 PRD_000315 C7 O4 DOUB N N 20 PRD_000315 C8 H10 SING N N 21 PRD_000315 C8 H11 SING N N 22 PRD_000315 C8 H12 SING N N 23 PRD_000315 N2 C9 SING N N 24 PRD_000315 N2 H13 SING N N 25 PRD_000315 C9 C10 SING N N 26 PRD_000315 C9 C11 SING N N 27 PRD_000315 C9 H14 SING N N 28 PRD_000315 C10 O5 DOUB N N 29 PRD_000315 C11 H15 SING N N 30 PRD_000315 C11 H16 SING N N 31 PRD_000315 C11 H17 SING N N 32 PRD_000315 N3 C12 SING N N 33 PRD_000315 N3 C16 SING N N 34 PRD_000315 C12 C13 SING N N 35 PRD_000315 C12 C14 SING N N 36 PRD_000315 C12 H18 SING N N 37 PRD_000315 C13 O6 DOUB N N 38 PRD_000315 C14 C15 SING N N 39 PRD_000315 C14 H19 SING N N 40 PRD_000315 C14 H20 SING N N 41 PRD_000315 C15 C16 SING N N 42 PRD_000315 C15 H21 SING N N 43 PRD_000315 C15 H22 SING N N 44 PRD_000315 C16 H23 SING N N 45 PRD_000315 C16 H24 SING N N 46 PRD_000315 N4 C17 SING N N 47 PRD_000315 N4 H25 SING N N 48 PRD_000315 C17 C18 SING N N 49 PRD_000315 C17 B1 SING N N 50 PRD_000315 C17 H26 SING N N 51 PRD_000315 C18 C19 SING N N 52 PRD_000315 C18 H27 SING N N 53 PRD_000315 C18 H28 SING N N 54 PRD_000315 C19 C20 DOUB Y N 55 PRD_000315 C19 C21 SING Y N 56 PRD_000315 C20 C22 SING Y N 57 PRD_000315 C20 H29 SING N N 58 PRD_000315 C21 C23 DOUB Y N 59 PRD_000315 C21 H30 SING N N 60 PRD_000315 C22 C24 DOUB Y N 61 PRD_000315 C22 H31 SING N N 62 PRD_000315 C23 C24 SING Y N 63 PRD_000315 C23 H32 SING N N 64 PRD_000315 C24 H33 SING N N 65 PRD_000315 B1 O7 SING N N 66 PRD_000315 B1 O8 SING N N 67 PRD_000315 O7 H34 SING N N 68 PRD_000315 O8 H35 SING N N 69 PRD_000315 C1 N1 SING N N 70 PRD_000315 C13 N4 SING N N 71 PRD_000315 C7 N2 SING N N 72 PRD_000315 C10 N3 SING N N 73 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_000315 SMILES ACDLabs 12.01 "O=C(NC(B(O)O)Cc1ccccc1)C2N(C(=O)C(NC(=O)C(NC(=O)CCC(=O)OC)C)C)CCC2" PRD_000315 InChI InChI 1.03 "InChI=1S/C24H35BN4O8/c1-15(26-20(30)11-12-21(31)37-3)22(32)27-16(2)24(34)29-13-7-10-18(29)23(33)28-19(25(35)36)14-17-8-5-4-6-9-17/h4-6,8-9,15-16,18-19,35-36H,7,10-14H2,1-3H3,(H,26,30)(H,27,32)(H,28,33)/t15-,16?,18?,19-/m0/s1" PRD_000315 InChIKey InChI 1.03 APEBFWNGBDQFTJ-GSHBMFQSSA-N PRD_000315 SMILES_CANONICAL CACTVS 3.370 "COC(=O)CCC(=O)N[C@@H](C)C(=O)N[C@@H](C)C(=O)N1CCC[C@H]1C(=O)N[C@@H](Cc2ccccc2)B(O)O" PRD_000315 SMILES CACTVS 3.370 "COC(=O)CCC(=O)N[CH](C)C(=O)N[CH](C)C(=O)N1CCC[CH]1C(=O)N[CH](Cc2ccccc2)B(O)O" PRD_000315 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "B([C@H](Cc1ccccc1)NC(=O)[C@@H]2CCCN2C(=O)[C@H](C)NC(=O)[C@H](C)NC(=O)CCC(=O)OC)(O)O" PRD_000315 SMILES "OpenEye OEToolkits" 1.7.6 "B(C(Cc1ccccc1)NC(=O)C2CCCN2C(=O)C(C)NC(=O)C(C)NC(=O)CCC(=O)OC)(O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD_000315 "SYSTEMATIC NAME" ACDLabs 12.01 "N-(4-methoxy-4-oxobutanoyl)-L-alanyl-L-alanyl-N-[(1R)-1-(dihydroxyboranyl)-2-phenylethyl]-L-prolinamide" PRD_000315 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(1R)-1-[[(2S)-1-[(2S)-2-[[(2S)-2-[(4-methoxy-4-oxidanylidene-butanoyl)amino]propanoyl]amino]propanoyl]pyrrolidin-2-yl]carbonylamino]-2-phenyl-ethyl]boronic acid" #