data_PRDCC_000316 # _chem_comp.id PRD_000316 _chem_comp.name "METHOXYSUCCINYL-ALA-ALA-PRO-VALINE BORONIC ACID" _chem_comp.formula "C20 H35 B N4 O8" _chem_comp.formula_weight 470.325 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_000316 C1 C1 C 0 1 N N N ? ? ? 5.699 -0.632 0.057 MSU 1 C1 polymer 1 1 1 ? ? ? PRD_000316 O1 O1 O 0 1 N N N ? ? ? 5.616 -1.811 -0.215 MSU 1 O1 polymer 1 1 2 ? ? ? PRD_000316 C2 C2 C 0 1 N N N ? ? ? 7.047 0.041 0.092 MSU 1 C2 polymer 1 1 3 ? ? ? PRD_000316 C3 C3 C 0 1 N N N ? ? ? 8.135 -0.979 -0.249 MSU 1 C3 polymer 1 1 4 ? ? ? PRD_000316 C4 C4 C 0 1 N N N ? ? ? 9.483 -0.307 -0.214 MSU 1 C4 polymer 1 1 5 ? ? ? PRD_000316 O2 O2 O 0 1 N N N ? ? ? 9.565 0.868 0.056 MSU 1 OT1 polymer 1 1 6 ? ? ? PRD_000316 O3 O3 O 0 1 N N N ? ? ? 10.592 -1.013 -0.483 MSU 1 OT2 polymer 1 1 7 ? ? ? PRD_000316 C5 C5 C 0 1 N N N ? ? ? 11.856 -0.300 -0.431 MSU 1 CT polymer 1 1 8 ? ? ? PRD_000316 N1 N1 N 0 1 N N N 13.850 42.119 18.254 4.584 0.079 0.321 ALA 2 N polymer 1 1 9 ? ? ? PRD_000316 C6 C6 C 0 1 N N S 14.383 40.744 18.081 3.273 -0.573 0.281 ALA 2 CA polymer 1 1 10 ? ? ? PRD_000316 C7 C7 C 0 1 N N N 13.504 39.564 18.451 2.209 0.455 -0.003 ALA 2 C polymer 1 1 11 ? ? ? PRD_000316 O4 O4 O 0 1 N N N 12.770 39.506 19.472 2.516 1.618 -0.156 ALA 2 O polymer 1 1 12 ? ? ? PRD_000316 C8 C8 C 0 1 N N N 15.684 40.631 18.865 2.993 -1.238 1.630 ALA 2 CB polymer 1 1 13 ? ? ? PRD_000316 N2 N2 N 0 1 N N N 13.589 38.562 17.590 0.916 0.082 -0.086 ALA 3 N polymer 1 1 14 ? ? ? PRD_000316 C9 C9 C 0 1 N N S 12.805 37.308 17.772 -0.118 1.082 -0.362 ALA 3 CA polymer 1 1 15 ? ? ? PRD_000316 C10 C10 C 0 1 N N N 13.703 36.149 17.362 -1.439 0.601 0.181 ALA 3 C polymer 1 1 16 ? ? ? PRD_000316 O5 O5 O 0 1 N N N 14.517 36.370 16.474 -1.642 -0.587 0.318 ALA 3 O polymer 1 1 17 ? ? ? PRD_000316 C11 C11 C 0 1 N N N 11.594 37.381 16.866 -0.234 1.292 -1.873 ALA 3 CB polymer 1 1 18 ? ? ? PRD_000316 N3 N3 N 0 1 N N N 13.498 35.005 17.972 -2.395 1.491 0.515 PRO 4 N polymer 1 1 19 ? ? ? PRD_000316 C12 C12 C 0 1 N N S 14.226 33.799 17.629 -3.685 1.168 1.142 PRO 4 CA polymer 1 1 20 ? ? ? PRD_000316 C13 C13 C 0 1 N N N 13.898 33.397 16.194 -4.465 0.231 0.256 PRO 4 C polymer 1 1 21 ? ? ? PRD_000316 O6 O6 O 0 1 N N N 12.744 33.568 15.762 -3.996 -0.137 -0.800 PRO 4 O polymer 1 1 22 ? ? ? PRD_000316 C14 C14 C 0 1 N N N 13.581 32.699 18.488 -4.456 2.494 1.312 PRO 4 CB polymer 1 1 23 ? ? ? PRD_000316 C15 C15 C 0 1 N N N 12.776 33.397 19.508 -3.794 3.418 0.256 PRO 4 CG polymer 1 1 24 ? ? ? PRD_000316 C16 C16 C 0 1 N N N 12.482 34.790 19.011 -2.317 2.950 0.318 PRO 4 CD polymer 1 1 25 ? ? ? PRD_000316 N4 N4 N 0 1 N N N 14.843 32.807 15.468 -5.684 -0.198 0.637 B2V 5 N polymer 1 1 26 ? ? ? PRD_000316 C17 C17 C 0 1 N N R 14.641 32.320 14.088 -6.443 -1.109 -0.224 B2V 5 CA polymer 1 1 27 ? ? ? PRD_000316 C18 C18 C 0 1 N N N 15.480 33.135 13.084 -7.040 -2.233 0.624 B2V 5 CB polymer 1 1 28 ? ? ? PRD_000316 C19 C19 C 0 1 N N N 14.925 34.525 12.939 -7.832 -3.185 -0.275 B2V 5 CG1 polymer 1 1 29 ? ? ? PRD_000316 C20 C20 C 0 1 N N N 16.979 33.209 13.378 -5.914 -3.004 1.315 B2V 5 CG2 polymer 1 1 30 ? ? ? PRD_000316 B1 B1 B 0 1 N N N 14.913 30.790 14.065 -7.599 -0.317 -0.933 B2V 5 B polymer 1 1 31 ? ? ? PRD_000316 O7 O7 O 0 1 N N N 14.886 30.192 12.718 -7.766 1.070 -0.683 B2V 5 O1 polymer 1 1 32 ? ? ? PRD_000316 O8 O8 O 0 1 N N N 14.013 30.076 15.006 -8.477 -0.990 -1.824 B2V 5 O2 polymer 1 1 33 ? ? ? PRD_000316 H1 H1 H 0 1 N N N ? ? ? 7.068 0.852 -0.637 MSU 1 H21 polymer 1 1 34 ? ? ? PRD_000316 H2 H2 H 0 1 N N N ? ? ? 7.226 0.444 1.089 MSU 1 H22 polymer 1 1 35 ? ? ? PRD_000316 H3 H3 H 0 1 N N N ? ? ? 8.114 -1.790 0.479 MSU 1 H31 polymer 1 1 36 ? ? ? PRD_000316 H4 H4 H 0 1 N N N ? ? ? 7.956 -1.382 -1.246 MSU 1 H32 polymer 1 1 37 ? ? ? PRD_000316 H5 H5 H 0 1 N N N ? ? ? 12.003 0.106 0.570 MSU 1 HT1 polymer 1 1 38 ? ? ? PRD_000316 H6 H6 H 0 1 N N N ? ? ? 12.670 -0.986 -0.667 MSU 1 HT2 polymer 1 1 39 ? ? ? PRD_000316 H7 H7 H 0 1 N N N ? ? ? 11.845 0.514 -1.155 MSU 1 HT3 polymer 1 1 40 ? ? ? PRD_000316 H8 H8 H 0 1 N N N 13.813 43.082 18.519 4.650 1.022 0.538 ALA 2 H polymer 1 1 41 ? ? ? PRD_000316 H9 H9 H 0 1 N N N 14.642 40.627 17.018 3.267 -1.329 -0.505 ALA 2 HA polymer 1 1 42 ? ? ? PRD_000316 H10 H10 H 0 1 N N N 16.096 39.617 18.749 2.999 -0.483 2.416 ALA 2 HB1 polymer 1 1 43 ? ? ? PRD_000316 H11 H11 H 0 1 N N N 16.407 41.366 18.483 2.017 -1.724 1.600 ALA 2 HB2 polymer 1 1 44 ? ? ? PRD_000316 H12 H12 H 0 1 N N N 15.489 40.828 19.929 3.763 -1.982 1.836 ALA 2 HB3 polymer 1 1 45 ? ? ? PRD_000316 H13 H13 H 0 1 N N N 14.194 38.649 16.798 0.671 -0.848 0.037 ALA 3 H polymer 1 1 46 ? ? ? PRD_000316 H14 H14 H 0 1 N N N 12.492 37.194 18.820 0.150 2.024 0.116 ALA 3 HA polymer 1 1 47 ? ? ? PRD_000316 H15 H15 H 0 1 N N N 10.995 36.466 16.980 -0.588 0.374 -2.342 ALA 3 HB1 polymer 1 1 48 ? ? ? PRD_000316 H16 H16 H 0 1 N N N 10.984 38.255 17.139 -0.940 2.098 -2.075 ALA 3 HB2 polymer 1 1 49 ? ? ? PRD_000316 H17 H17 H 0 1 N N N 11.923 37.476 15.821 0.743 1.554 -2.279 ALA 3 HB3 polymer 1 1 50 ? ? ? PRD_000316 H18 H18 H 0 1 N N N 15.309 33.877 17.802 -3.519 0.706 2.115 PRO 4 HA polymer 1 1 51 ? ? ? PRD_000316 H19 H19 H 0 1 N N N 12.938 32.057 17.867 -5.515 2.355 1.093 PRO 4 HB2 polymer 1 1 52 ? ? ? PRD_000316 H20 H20 H 0 1 N N N 14.357 32.085 18.968 -4.318 2.894 2.316 PRO 4 HB3 polymer 1 1 53 ? ? ? PRD_000316 H21 H21 H 0 1 N N N 11.833 32.855 19.672 -4.220 3.250 -0.733 PRO 4 HG2 polymer 1 1 54 ? ? ? PRD_000316 H22 H22 H 0 1 N N N 13.338 33.450 20.452 -3.882 4.466 0.545 PRO 4 HG3 polymer 1 1 55 ? ? ? PRD_000316 H23 H23 H 0 1 N N N 12.586 35.527 19.821 -1.802 3.419 1.156 PRO 4 HD2 polymer 1 1 56 ? ? ? PRD_000316 H24 H24 H 0 1 N N N 11.468 34.851 18.588 -1.807 3.179 -0.618 PRO 4 HD3 polymer 1 1 57 ? ? ? PRD_000316 H25 H25 H 0 1 N N N 15.745 32.686 15.881 -6.060 0.096 1.482 B2V 5 H polymer 1 1 58 ? ? ? PRD_000316 H26 H26 H 0 1 N N N 13.583 32.466 13.825 -5.779 -1.534 -0.976 B2V 5 HA polymer 1 1 59 ? ? ? PRD_000316 H27 H27 H 0 1 N N N 15.372 32.640 12.108 -7.704 -1.808 1.377 B2V 5 HB polymer 1 1 60 ? ? ? PRD_000316 H28 H28 H 0 0 N N N 15.535 35.091 12.220 -7.168 -3.610 -1.028 B2V 5 HG11 polymer 1 1 61 ? ? ? PRD_000316 H29 H29 H 0 0 N N N 13.888 34.470 12.576 -8.258 -3.986 0.329 B2V 5 HG12 polymer 1 1 62 ? ? ? PRD_000316 H30 H30 H 0 0 N N N 14.945 35.031 13.915 -8.635 -2.635 -0.767 B2V 5 HG13 polymer 1 1 63 ? ? ? PRD_000316 H31 H31 H 0 0 N N N 17.476 33.811 12.603 -5.349 -2.327 1.956 B2V 5 HG21 polymer 1 1 64 ? ? ? PRD_000316 H32 H32 H 0 0 N N N 17.137 33.675 14.362 -6.339 -3.806 1.919 B2V 5 HG22 polymer 1 1 65 ? ? ? PRD_000316 H33 H33 H 0 0 N N N 17.402 32.194 13.381 -5.250 -3.430 0.563 B2V 5 HG23 polymer 1 1 66 ? ? ? PRD_000316 H34 H34 H 0 1 N N N 15.059 29.260 12.781 -8.504 1.470 -1.164 B2V 5 HO1 polymer 1 1 67 ? ? ? PRD_000316 H35 H35 H 0 1 N N N 14.197 29.144 14.975 -9.156 -0.420 -2.211 B2V 5 HO2 polymer 1 1 68 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_000316 C1 O1 DOUB N N 1 PRD_000316 C1 C2 SING N N 2 PRD_000316 C2 C3 SING N N 3 PRD_000316 C2 H1 SING N N 4 PRD_000316 C2 H2 SING N N 5 PRD_000316 C3 C4 SING N N 6 PRD_000316 C3 H3 SING N N 7 PRD_000316 C3 H4 SING N N 8 PRD_000316 C4 O2 DOUB N N 9 PRD_000316 C4 O3 SING N N 10 PRD_000316 O3 C5 SING N N 11 PRD_000316 C5 H5 SING N N 12 PRD_000316 C5 H6 SING N N 13 PRD_000316 C5 H7 SING N N 14 PRD_000316 N1 C6 SING N N 15 PRD_000316 N1 H8 SING N N 16 PRD_000316 C6 C7 SING N N 17 PRD_000316 C6 C8 SING N N 18 PRD_000316 C6 H9 SING N N 19 PRD_000316 C7 O4 DOUB N N 20 PRD_000316 C8 H10 SING N N 21 PRD_000316 C8 H11 SING N N 22 PRD_000316 C8 H12 SING N N 23 PRD_000316 N2 C9 SING N N 24 PRD_000316 N2 H13 SING N N 25 PRD_000316 C9 C10 SING N N 26 PRD_000316 C9 C11 SING N N 27 PRD_000316 C9 H14 SING N N 28 PRD_000316 C10 O5 DOUB N N 29 PRD_000316 C11 H15 SING N N 30 PRD_000316 C11 H16 SING N N 31 PRD_000316 C11 H17 SING N N 32 PRD_000316 N3 C12 SING N N 33 PRD_000316 N3 C16 SING N N 34 PRD_000316 C12 C13 SING N N 35 PRD_000316 C12 C14 SING N N 36 PRD_000316 C12 H18 SING N N 37 PRD_000316 C13 O6 DOUB N N 38 PRD_000316 C14 C15 SING N N 39 PRD_000316 C14 H19 SING N N 40 PRD_000316 C14 H20 SING N N 41 PRD_000316 C15 C16 SING N N 42 PRD_000316 C15 H21 SING N N 43 PRD_000316 C15 H22 SING N N 44 PRD_000316 C16 H23 SING N N 45 PRD_000316 C16 H24 SING N N 46 PRD_000316 N4 C17 SING N N 47 PRD_000316 N4 H25 SING N N 48 PRD_000316 C17 C18 SING N N 49 PRD_000316 C17 B1 SING N N 50 PRD_000316 C17 H26 SING N N 51 PRD_000316 C18 C19 SING N N 52 PRD_000316 C18 C20 SING N N 53 PRD_000316 C18 H27 SING N N 54 PRD_000316 C19 H28 SING N N 55 PRD_000316 C19 H29 SING N N 56 PRD_000316 C19 H30 SING N N 57 PRD_000316 C20 H31 SING N N 58 PRD_000316 C20 H32 SING N N 59 PRD_000316 C20 H33 SING N N 60 PRD_000316 B1 O7 SING N N 61 PRD_000316 B1 O8 SING N N 62 PRD_000316 O7 H34 SING N N 63 PRD_000316 O8 H35 SING N N 64 PRD_000316 C1 N1 SING N N 65 PRD_000316 C13 N4 SING N N 66 PRD_000316 C7 N2 SING N N 67 PRD_000316 C10 N3 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_000316 SMILES ACDLabs 12.01 "O=C(NC(B(O)O)C(C)C)C1N(C(=O)C(NC(=O)C(NC(=O)CCC(=O)OC)C)C)CCC1" PRD_000316 InChI InChI 1.03 "InChI=1S/C20H35BN4O8/c1-11(2)17(21(31)32)24-19(29)14-7-6-10-25(14)20(30)13(4)23-18(28)12(3)22-15(26)8-9-16(27)33-5/h11-14,17,31-32H,6-10H2,1-5H3,(H,22,26)(H,23,28)(H,24,29)/t12-,13?,14?,17-/m0/s1" PRD_000316 InChIKey InChI 1.03 YPHQJTAKLOESOF-VWLISTAJSA-N PRD_000316 SMILES_CANONICAL CACTVS 3.370 "COC(=O)CCC(=O)N[C@@H](C)C(=O)N[C@@H](C)C(=O)N1CCC[C@H]1C(=O)N[C@H](B(O)O)C(C)C" PRD_000316 SMILES CACTVS 3.370 "COC(=O)CCC(=O)N[CH](C)C(=O)N[CH](C)C(=O)N1CCC[CH]1C(=O)N[CH](B(O)O)C(C)C" PRD_000316 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "B([C@H](C(C)C)NC(=O)[C@@H]1CCCN1C(=O)[C@H](C)NC(=O)[C@H](C)NC(=O)CCC(=O)OC)(O)O" PRD_000316 SMILES "OpenEye OEToolkits" 1.7.6 "B(C(C(C)C)NC(=O)C1CCCN1C(=O)C(C)NC(=O)C(C)NC(=O)CCC(=O)OC)(O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD_000316 "SYSTEMATIC NAME" ACDLabs 12.01 "N-(4-methoxy-4-oxobutanoyl)-L-alanyl-L-alanyl-N-[(1R)-1-(dihydroxyboranyl)-2-methylpropyl]-L-prolinamide" PRD_000316 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(1R)-1-[[(2S)-1-[(2S)-2-[[(2S)-2-[(4-methoxy-4-oxidanylidene-butanoyl)amino]propanoyl]amino]propanoyl]pyrrolidin-2-yl]carbonylamino]-2-methyl-propyl]boronic acid" #