data_PRDCC_000318 # _chem_comp.id PRD_000318 _chem_comp.name "N-(4-methoxy-4-oxobutanoyl)-L-alanyl-L-alanyl-N-[(1R)-1-(dihydroxyboranyl)pentyl]-L-prolinamide" _chem_comp.formula "C21 H37 B N4 O8" _chem_comp.formula_weight 484.351 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_000318 C1 C1 C 0 1 N N N ? ? ? 6.007 -0.756 0.098 MSU 1 C1 polymer 1 1 1 ? ? ? PRD_000318 O1 O1 O 0 1 N N N ? ? ? 5.860 -1.940 -0.123 MSU 1 O1 polymer 1 1 2 ? ? ? PRD_000318 C2 C2 C 0 1 N N N ? ? ? 7.390 -0.156 0.104 MSU 1 C2 polymer 1 1 3 ? ? ? PRD_000318 C3 C3 C 0 1 N N N ? ? ? 8.420 -1.247 -0.195 MSU 1 C3 polymer 1 1 4 ? ? ? PRD_000318 C4 C4 C 0 1 N N N ? ? ? 9.803 -0.648 -0.190 MSU 1 C4 polymer 1 1 5 ? ? ? PRD_000318 O2 O2 O 0 1 N N N ? ? ? 9.949 0.531 0.030 MSU 1 OT1 polymer 1 1 6 ? ? ? PRD_000318 O3 O3 O 0 1 N N N ? ? ? 10.872 -1.423 -0.430 MSU 1 OT2 polymer 1 1 7 ? ? ? PRD_000318 C5 C5 C 0 1 N N N ? ? ? 12.172 -0.778 -0.409 MSU 1 CT polymer 1 1 8 ? ? ? PRD_000318 N1 N1 N 0 1 N N N 12.944 41.783 18.894 4.934 0.024 0.334 ALA 2 N polymer 1 1 9 ? ? ? PRD_000318 C6 C6 C 0 1 N N S 13.815 40.580 18.751 3.589 -0.558 0.323 ALA 2 CA polymer 1 1 10 ? ? ? PRD_000318 C7 C7 C 0 1 N N N 13.020 39.263 18.887 2.581 0.513 -0.004 ALA 2 C polymer 1 1 11 ? ? ? PRD_000318 O4 O4 O 0 1 N N N 12.236 39.111 19.863 2.949 1.651 -0.207 ALA 2 O polymer 1 1 12 ? ? ? PRD_000318 C8 C8 C 0 1 N N N 15.045 40.361 19.621 3.278 -1.149 1.699 ALA 2 CB polymer 1 1 13 ? ? ? PRD_000318 N2 N2 N 0 1 N N N 13.314 38.396 17.915 1.270 0.207 -0.069 ALA 3 N polymer 1 1 14 ? ? ? PRD_000318 C9 C9 C 0 1 N N S 12.617 37.089 18.038 0.290 1.249 -0.387 ALA 3 CA polymer 1 1 15 ? ? ? PRD_000318 C10 C10 C 0 1 N N N 13.633 36.004 17.740 -1.054 0.863 0.178 ALA 3 C polymer 1 1 16 ? ? ? PRD_000318 O5 O5 O 0 1 N N N 14.491 36.314 16.911 -1.320 -0.305 0.365 ALA 3 O polymer 1 1 17 ? ? ? PRD_000318 C11 C11 C 0 1 N N N 11.493 36.995 17.047 0.180 1.401 -1.905 ALA 3 CB polymer 1 1 18 ? ? ? PRD_000318 N3 N3 N 0 1 N N N 13.407 34.854 18.347 -1.959 1.816 0.475 PRO 4 N polymer 1 1 19 ? ? ? PRD_000318 C12 C12 C 0 1 N N S 14.208 33.666 18.030 -3.262 1.590 1.116 PRO 4 CA polymer 1 1 20 ? ? ? PRD_000318 C13 C13 C 0 1 N N N 13.836 33.216 16.594 -4.095 0.660 0.272 PRO 4 C polymer 1 1 21 ? ? ? PRD_000318 O6 O6 O 0 1 N N N 12.636 33.299 16.174 -3.649 0.223 -0.768 PRO 4 O polymer 1 1 22 ? ? ? PRD_000318 C14 C14 C 0 1 N N N 13.777 32.701 19.159 -3.960 2.962 1.230 PRO 4 CB polymer 1 1 23 ? ? ? PRD_000318 C15 C15 C 0 1 N N N 12.543 33.199 19.855 -3.253 3.804 0.136 PRO 4 CG polymer 1 1 24 ? ? ? PRD_000318 C16 C16 C 0 1 N N N 12.286 34.559 19.253 -1.803 3.259 0.215 PRO 4 CD polymer 1 1 25 ? ? ? PRD_000318 N4 N4 N 0 1 N N N 14.777 32.732 15.843 -5.334 0.314 0.672 BNO 5 N polymer 1 1 26 ? ? ? PRD_000318 C17 C17 C 0 1 N N R 14.546 32.280 14.454 -6.143 -0.590 -0.149 BNO 5 CA polymer 1 1 27 ? ? ? PRD_000318 C18 C18 C 0 1 N N N 15.514 33.126 13.536 -6.797 -1.644 0.747 BNO 5 CB polymer 1 1 28 ? ? ? PRD_000318 C19 C19 C 0 1 N N N 15.211 34.591 13.781 -7.642 -2.588 -0.110 BNO 5 CG polymer 1 1 29 ? ? ? PRD_000318 C20 C20 C 0 1 N N N 14.256 35.099 12.705 -8.297 -3.642 0.785 BNO 5 CD polymer 1 1 30 ? ? ? PRD_000318 C21 C21 C 0 1 N N N 13.209 35.939 13.487 -9.142 -4.587 -0.072 BNO 5 CE polymer 1 1 31 ? ? ? PRD_000318 B1 B1 B 0 1 N N N 14.810 30.749 14.194 -7.257 0.232 -0.889 BNO 5 B polymer 1 1 32 ? ? ? PRD_000318 O7 O7 O 0 1 N N N 14.812 30.265 12.761 -7.737 -0.202 -2.154 BNO 5 O1 polymer 1 1 33 ? ? ? PRD_000318 O8 O8 O 0 1 N N N 13.942 30.009 15.176 -7.786 1.408 -0.295 BNO 5 O2 polymer 1 1 34 ? ? ? PRD_000318 H1 H1 H 0 1 N N N ? ? ? 7.452 0.620 -0.659 MSU 1 H21 polymer 1 1 35 ? ? ? PRD_000318 H2 H2 H 0 1 N N N ? ? ? 7.594 0.278 1.082 MSU 1 H22 polymer 1 1 36 ? ? ? PRD_000318 H3 H3 H 0 1 N N N ? ? ? 8.358 -2.024 0.567 MSU 1 H31 polymer 1 1 37 ? ? ? PRD_000318 H4 H4 H 0 1 N N N ? ? ? 8.216 -1.682 -1.174 MSU 1 H32 polymer 1 1 38 ? ? ? PRD_000318 H5 H5 H 0 1 N N N ? ? ? 12.344 -0.338 0.573 MSU 1 HT1 polymer 1 1 39 ? ? ? PRD_000318 H6 H6 H 0 1 N N N ? ? ? 12.947 -1.516 -0.617 MSU 1 HT2 polymer 1 1 40 ? ? ? PRD_000318 H7 H7 H 0 1 N N N ? ? ? 12.202 0.004 -1.168 MSU 1 HT3 polymer 1 1 41 ? ? ? PRD_000318 H8 H8 H 0 1 N N N 12.769 42.728 19.170 5.051 0.970 0.510 ALA 2 H polymer 1 1 42 ? ? ? PRD_000318 H9 H9 H 0 1 N N N 14.183 40.594 17.715 3.540 -1.345 -0.430 ALA 2 HA polymer 1 1 43 ? ? ? PRD_000318 H10 H10 H 0 1 N N N 15.529 39.414 19.340 2.278 -1.582 1.691 ALA 2 HB1 polymer 1 1 44 ? ? ? PRD_000318 H11 H11 H 0 1 N N N 15.751 41.192 19.474 4.007 -1.924 1.935 ALA 2 HB2 polymer 1 1 45 ? ? ? PRD_000318 H12 H12 H 0 1 N N N 14.744 40.319 20.678 3.327 -0.363 2.452 ALA 2 HB3 polymer 1 1 46 ? ? ? PRD_000318 H13 H13 H 0 1 N N N 13.947 38.607 17.170 0.975 -0.703 0.093 ALA 3 H polymer 1 1 47 ? ? ? PRD_000318 H14 H14 H 0 1 N N N 12.228 36.962 19.059 0.610 2.194 0.051 ALA 3 HA polymer 1 1 48 ? ? ? PRD_000318 H15 H15 H 0 1 N N N 10.990 36.022 17.153 1.168 1.593 -2.323 ALA 3 HB1 polymer 1 1 49 ? ? ? PRD_000318 H16 H16 H 0 1 N N N 10.771 37.803 17.234 -0.224 0.484 -2.334 ALA 3 HB2 polymer 1 1 50 ? ? ? PRD_000318 H17 H17 H 0 1 N N N 11.894 37.091 16.027 -0.482 2.234 -2.140 ALA 3 HB3 polymer 1 1 51 ? ? ? PRD_000318 H18 H18 H 0 1 N N N 15.286 33.876 18.097 -3.118 1.162 2.108 PRO 4 HA polymer 1 1 52 ? ? ? PRD_000318 H19 H19 H 0 1 N N N 13.570 31.711 18.726 -5.026 2.871 1.019 PRO 4 HB2 polymer 1 1 53 ? ? ? PRD_000318 H20 H20 H 0 1 N N N 14.593 32.618 19.891 -3.797 3.397 2.217 PRO 4 HB3 polymer 1 1 54 ? ? ? PRD_000318 H21 H21 H 0 1 N N N 11.694 32.525 19.668 -3.691 3.617 -0.845 PRO 4 HG2 polymer 1 1 55 ? ? ? PRD_000318 H22 H22 H 0 1 N N N 12.715 33.281 20.938 -3.284 4.866 0.380 PRO 4 HG3 polymer 1 1 56 ? ? ? PRD_000318 H23 H23 H 0 1 N N N 12.233 35.319 20.047 -1.261 3.735 1.033 PRO 4 HD2 polymer 1 1 57 ? ? ? PRD_000318 H24 H24 H 0 1 N N N 11.340 34.550 18.691 -1.285 3.421 -0.730 PRO 4 HD3 polymer 1 1 58 ? ? ? PRD_000318 H25 H25 H 0 1 N N N 15.700 32.661 16.221 -5.690 0.664 1.504 BNO 5 H polymer 1 1 59 ? ? ? PRD_000318 H26 H26 H 0 1 N N N 13.510 32.506 14.162 -5.506 -1.082 -0.883 BNO 5 HA polymer 1 1 60 ? ? ? PRD_000318 H27 H27 H 0 1 N N N 16.561 32.911 13.796 -6.024 -2.214 1.261 BNO 5 HB1 polymer 1 1 61 ? ? ? PRD_000318 H28 H28 H 0 1 N N N 15.340 32.878 12.478 -7.435 -1.152 1.482 BNO 5 HB2 polymer 1 1 62 ? ? ? PRD_000318 H29 H29 H 0 1 N N N 14.745 34.709 14.770 -8.416 -2.018 -0.624 BNO 5 HG1 polymer 1 1 63 ? ? ? PRD_000318 H30 H30 H 0 1 N N N 16.146 35.170 13.745 -7.005 -3.080 -0.845 BNO 5 HG2 polymer 1 1 64 ? ? ? PRD_000318 H31 H31 H 0 1 N N N 14.790 35.724 11.974 -7.523 -4.213 1.299 BNO 5 HD1 polymer 1 1 65 ? ? ? PRD_000318 H32 H32 H 0 1 N N N 13.772 34.259 12.185 -8.934 -3.150 1.520 BNO 5 HD2 polymer 1 1 66 ? ? ? PRD_000318 H33 H33 H 0 1 N N N 12.470 36.351 12.784 -9.915 -4.016 -0.586 BNO 5 HE1 polymer 1 1 67 ? ? ? PRD_000318 H34 H34 H 0 1 N N N 12.699 35.298 14.221 -8.504 -5.079 -0.807 BNO 5 HE2 polymer 1 1 68 ? ? ? PRD_000318 H35 H35 H 0 1 N N N 13.717 36.763 14.010 -9.608 -5.337 0.566 BNO 5 HE3 polymer 1 1 69 ? ? ? PRD_000318 H36 H36 H 0 1 N N N 14.982 29.330 12.742 -7.318 -1.011 -2.477 BNO 5 HO1 polymer 1 1 70 ? ? ? PRD_000318 H37 H37 H 0 1 N N N 14.062 29.073 15.063 -7.398 1.623 0.565 BNO 5 HO2 polymer 1 1 71 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_000318 C1 O1 DOUB N N 1 PRD_000318 C1 C2 SING N N 2 PRD_000318 C2 C3 SING N N 3 PRD_000318 C2 H1 SING N N 4 PRD_000318 C2 H2 SING N N 5 PRD_000318 C3 C4 SING N N 6 PRD_000318 C3 H3 SING N N 7 PRD_000318 C3 H4 SING N N 8 PRD_000318 C4 O2 DOUB N N 9 PRD_000318 C4 O3 SING N N 10 PRD_000318 O3 C5 SING N N 11 PRD_000318 C5 H5 SING N N 12 PRD_000318 C5 H6 SING N N 13 PRD_000318 C5 H7 SING N N 14 PRD_000318 N1 C6 SING N N 15 PRD_000318 N1 H8 SING N N 16 PRD_000318 C6 C7 SING N N 17 PRD_000318 C6 C8 SING N N 18 PRD_000318 C6 H9 SING N N 19 PRD_000318 C7 O4 DOUB N N 20 PRD_000318 C8 H10 SING N N 21 PRD_000318 C8 H11 SING N N 22 PRD_000318 C8 H12 SING N N 23 PRD_000318 N2 C9 SING N N 24 PRD_000318 N2 H13 SING N N 25 PRD_000318 C9 C10 SING N N 26 PRD_000318 C9 C11 SING N N 27 PRD_000318 C9 H14 SING N N 28 PRD_000318 C10 O5 DOUB N N 29 PRD_000318 C11 H15 SING N N 30 PRD_000318 C11 H16 SING N N 31 PRD_000318 C11 H17 SING N N 32 PRD_000318 N3 C12 SING N N 33 PRD_000318 N3 C16 SING N N 34 PRD_000318 C12 C13 SING N N 35 PRD_000318 C12 C14 SING N N 36 PRD_000318 C12 H18 SING N N 37 PRD_000318 C13 O6 DOUB N N 38 PRD_000318 C14 C15 SING N N 39 PRD_000318 C14 H19 SING N N 40 PRD_000318 C14 H20 SING N N 41 PRD_000318 C15 C16 SING N N 42 PRD_000318 C15 H21 SING N N 43 PRD_000318 C15 H22 SING N N 44 PRD_000318 C16 H23 SING N N 45 PRD_000318 C16 H24 SING N N 46 PRD_000318 N4 C17 SING N N 47 PRD_000318 N4 H25 SING N N 48 PRD_000318 C17 C18 SING N N 49 PRD_000318 C17 B1 SING N N 50 PRD_000318 C17 H26 SING N N 51 PRD_000318 C18 C19 SING N N 52 PRD_000318 C18 H27 SING N N 53 PRD_000318 C18 H28 SING N N 54 PRD_000318 C19 C20 SING N N 55 PRD_000318 C19 H29 SING N N 56 PRD_000318 C19 H30 SING N N 57 PRD_000318 C20 C21 SING N N 58 PRD_000318 C20 H31 SING N N 59 PRD_000318 C20 H32 SING N N 60 PRD_000318 C21 H33 SING N N 61 PRD_000318 C21 H34 SING N N 62 PRD_000318 C21 H35 SING N N 63 PRD_000318 B1 O7 SING N N 64 PRD_000318 B1 O8 SING N N 65 PRD_000318 O7 H36 SING N N 66 PRD_000318 O8 H37 SING N N 67 PRD_000318 C1 N1 SING N N 68 PRD_000318 C13 N4 SING N N 69 PRD_000318 C7 N2 SING N N 70 PRD_000318 C10 N3 SING N N 71 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_000318 SMILES ACDLabs 12.01 "O=C(NC(B(O)O)CCCC)C1N(C(=O)C(NC(=O)C(NC(=O)CCC(=O)OC)C)C)CCC1" PRD_000318 InChI InChI 1.03 "InChI=1S/C21H37BN4O8/c1-5-6-9-16(22(32)33)25-20(30)15-8-7-12-26(15)21(31)14(3)24-19(29)13(2)23-17(27)10-11-18(28)34-4/h13-16,32-33H,5-12H2,1-4H3,(H,23,27)(H,24,29)(H,25,30)/t13-,14?,15?,16-/m0/s1" PRD_000318 InChIKey InChI 1.03 PQKYAJMFSHKDTC-LBDPXKHJSA-N PRD_000318 SMILES_CANONICAL CACTVS 3.370 "CCCC[C@H](NC(=O)[C@@H]1CCCN1C(=O)[C@H](C)NC(=O)[C@H](C)NC(=O)CCC(=O)OC)B(O)O" PRD_000318 SMILES CACTVS 3.370 "CCCC[CH](NC(=O)[CH]1CCCN1C(=O)[CH](C)NC(=O)[CH](C)NC(=O)CCC(=O)OC)B(O)O" PRD_000318 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "B([C@H](CCCC)NC(=O)[C@@H]1CCCN1C(=O)[C@H](C)NC(=O)[C@H](C)NC(=O)CCC(=O)OC)(O)O" PRD_000318 SMILES "OpenEye OEToolkits" 1.7.6 "B(C(CCCC)NC(=O)C1CCCN1C(=O)C(C)NC(=O)C(C)NC(=O)CCC(=O)OC)(O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD_000318 "SYSTEMATIC NAME" ACDLabs 12.01 "N-(4-methoxy-4-oxobutanoyl)-L-alanyl-L-alanyl-N-[(1R)-1-(dihydroxyboranyl)pentyl]-L-prolinamide" PRD_000318 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(1R)-1-[[(2S)-1-[(2S)-2-[[(2S)-2-[(4-methoxy-4-oxidanylidene-butanoyl)amino]propanoyl]amino]propanoyl]pyrrolidin-2-yl]carbonylamino]pentyl]boronic acid" #