data_PRDCC_000339 # _chem_comp.id PRD_000339 _chem_comp.name CARBOBENZOXY-DEHYDRO-VAL-ALA-ARG-SER _chem_comp.formula "C25 H40 N7 O8" _chem_comp.formula_weight 566.627 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_000339 C1 C1 C 0 1 N N N 7.008 22.364 -10.326 5.645 -0.585 0.501 PHQ 1 C1 polymer 1 1 1 ? ? ? PRD_000339 O1 O1 O 0 1 N N N 6.614 23.096 -9.430 5.593 -1.642 1.098 PHQ 1 O1 polymer 1 1 2 ? ? ? PRD_000339 O2 O2 O 0 1 N N N 6.310 21.111 -10.479 6.812 -0.165 -0.024 PHQ 1 O2 polymer 1 1 3 ? ? ? PRD_000339 C2 C2 C 0 1 N N N 6.584 20.104 -11.426 7.966 -1.026 0.161 PHQ 1 C2 polymer 1 1 4 ? ? ? PRD_000339 C3 C3 C 0 1 Y N N 5.630 18.964 -11.246 9.171 -0.397 -0.489 PHQ 1 C3 polymer 1 1 5 ? ? ? PRD_000339 C4 C4 C 0 1 Y N N 4.612 18.931 -10.263 9.981 0.456 0.236 PHQ 1 C4 polymer 1 1 6 ? ? ? PRD_000339 C5 C5 C 0 1 Y N N 3.748 17.810 -10.158 11.087 1.033 -0.361 PHQ 1 C5 polymer 1 1 7 ? ? ? PRD_000339 C6 C6 C 0 1 Y N N 3.854 16.685 -11.003 11.383 0.756 -1.683 PHQ 1 C6 polymer 1 1 8 ? ? ? PRD_000339 C7 C7 C 0 1 Y N N 4.861 16.708 -11.982 10.573 -0.099 -2.407 PHQ 1 C7 polymer 1 1 9 ? ? ? PRD_000339 C8 C8 C 0 1 Y N N 5.735 17.826 -12.100 9.470 -0.679 -1.809 PHQ 1 C8 polymer 1 1 10 ? ? ? PRD_000339 N1 N1 N 0 1 N N N 8.113 22.454 -11.250 4.534 0.165 0.360 VAL 2 N polymer 1 1 11 ? ? ? PRD_000339 C9 C9 C 0 1 N N S 8.374 23.296 -12.425 3.263 -0.295 0.926 VAL 2 CA polymer 1 1 12 ? ? ? PRD_000339 C10 C10 C 0 1 N N N 9.542 24.284 -12.680 2.121 0.324 0.163 VAL 2 C polymer 1 1 13 ? ? ? PRD_000339 O3 O3 O 0 1 N N N 10.558 23.918 -13.262 2.293 1.349 -0.462 VAL 2 O polymer 1 1 14 ? ? ? PRD_000339 C11 C11 C 0 1 N N N 7.218 23.138 -13.475 3.180 0.121 2.396 VAL 2 CB polymer 1 1 15 ? ? ? PRD_000339 C12 C12 C 0 1 N N N 7.447 24.034 -14.639 4.257 -0.615 3.196 VAL 2 CG1 polymer 1 1 16 ? ? ? PRD_000339 C13 C13 C 0 1 N N N 7.179 21.689 -13.994 3.401 1.631 2.512 VAL 2 CG2 polymer 1 1 17 ? ? ? PRD_000339 N2 N2 N 0 1 N N N 9.566 25.458 -12.041 0.906 -0.261 0.177 ALA 3 N polymer 1 1 18 ? ? ? PRD_000339 C14 C14 C 0 1 N N S 10.489 26.616 -12.201 -0.176 0.279 -0.649 ALA 3 CA polymer 1 1 19 ? ? ? PRD_000339 C15 C15 C 0 1 N N N 10.832 27.404 -10.847 -1.505 -0.099 -0.046 ALA 3 C polymer 1 1 20 ? ? ? PRD_000339 O4 O4 O 0 1 N N N 9.983 27.603 -9.942 -1.543 -0.755 0.974 ALA 3 O polymer 1 1 21 ? ? ? PRD_000339 C16 C16 C 0 1 N N N 9.750 27.549 -13.210 -0.076 -0.297 -2.063 ALA 3 CB polymer 1 1 22 ? ? ? PRD_000339 N3 N3 N 0 1 N N N 12.080 27.890 -10.770 -2.650 0.293 -0.639 ARG 4 N polymer 1 1 23 ? ? ? PRD_000339 C17 C17 C 0 1 N N S 12.612 28.639 -9.624 -3.941 -0.075 -0.052 ARG 4 CA polymer 1 1 24 ? ? ? PRD_000339 C18 C18 C 0 1 N N N 12.680 27.919 -8.281 -4.335 -1.450 -0.526 ARG 4 C polymer 1 1 25 ? ? ? PRD_000339 O5 O5 O 0 1 N N N 13.546 28.194 -7.429 -3.609 -2.063 -1.280 ARG 4 O polymer 1 1 26 ? ? ? PRD_000339 C19 C19 C 0 1 N N N 11.678 29.800 -9.230 -5.004 0.938 -0.485 ARG 4 CB polymer 1 1 27 ? ? ? PRD_000339 C20 C20 C 0 1 N N N 12.303 30.816 -8.292 -4.669 2.311 0.102 ARG 4 CG polymer 1 1 28 ? ? ? PRD_000339 C21 C21 C 0 1 N N N 13.460 31.582 -8.942 -5.732 3.323 -0.331 ARG 4 CD polymer 1 1 29 ? ? ? PRD_000339 N4 N4 N 0 1 N N N 13.417 33.017 -8.657 -5.411 4.637 0.231 ARG 4 NE polymer 1 1 30 ? ? ? PRD_000339 C22 C22 C 0 1 N N N 14.449 33.842 -8.813 -6.226 5.707 -0.023 ARG 4 CZ polymer 1 1 31 ? ? ? PRD_000339 N5 N5 N 0 1 N N N 15.614 33.375 -9.241 -7.311 5.552 -0.780 ARG 4 NH1 polymer 1 1 32 ? ? ? PRD_000339 N6 N6 N 1 1 N N N 14.316 35.138 -8.571 -5.934 6.902 0.488 ARG 4 NH2 polymer 1 1 33 ? ? ? PRD_000339 N7 N7 N 0 1 N N N 11.788 26.958 -8.111 -5.495 -1.998 -0.113 SER 5 N polymer 1 1 34 ? ? ? PRD_000339 C23 C23 C 0 1 N N S 11.494 26.353 -6.832 -5.877 -3.336 -0.573 SER 5 CA polymer 1 1 35 ? ? ? PRD_000339 C24 C24 C 0 1 N N N 10.032 26.033 -6.482 -7.376 -3.478 -0.512 SER 5 C polymer 1 1 36 ? ? ? PRD_000339 O6 O6 O 0 1 N N N 9.758 25.661 -5.331 -8.055 -2.557 -0.123 SER 5 O polymer 1 1 37 ? ? ? PRD_000339 C25 C25 C 0 1 N N N 12.404 26.662 -5.623 -5.228 -4.390 0.325 SER 5 CB polymer 1 1 38 ? ? ? PRD_000339 O7 O7 O 0 1 N N N 11.669 26.481 -4.448 -5.757 -4.280 1.648 SER 5 OG polymer 1 1 39 ? ? ? PRD_000339 O8 O8 O 0 1 N Y N 9.178 26.137 -7.388 -7.957 -4.628 -0.889 SER 5 OXT polymer 1 1 40 ? ? ? PRD_000339 H1 H1 H 0 1 N N N 6.473 20.516 -12.440 8.155 -1.156 1.227 PHQ 1 H21 polymer 1 1 41 ? ? ? PRD_000339 H2 H2 H 0 1 N N N 7.614 19.743 -11.288 7.772 -1.997 -0.295 PHQ 1 H22 polymer 1 1 42 ? ? ? PRD_000339 H3 H3 H 0 1 N N N 4.492 19.765 -9.588 9.750 0.673 1.268 PHQ 1 H41 polymer 1 1 43 ? ? ? PRD_000339 H4 H4 H 0 1 N N N 2.978 17.818 -9.401 11.720 1.700 0.205 PHQ 1 H51 polymer 1 1 44 ? ? ? PRD_000339 H5 H5 H 0 1 N N N 3.188 15.841 -10.901 12.246 1.207 -2.149 PHQ 1 H61 polymer 1 1 45 ? ? ? PRD_000339 H6 H6 H 0 1 N N N 4.974 15.869 -12.652 10.804 -0.315 -3.440 PHQ 1 H71 polymer 1 1 46 ? ? ? PRD_000339 H7 H7 H 0 1 N N N 6.502 17.812 -12.860 8.839 -1.349 -2.375 PHQ 1 H81 polymer 1 1 47 ? ? ? PRD_000339 H8 H8 H 0 1 N N N 8.852 21.811 -11.049 4.576 1.009 -0.117 VAL 2 H polymer 1 1 48 ? ? ? PRD_000339 H9 H9 H 0 1 N N N 8.939 22.482 -12.903 3.204 -1.381 0.852 VAL 2 HA polymer 1 1 49 ? ? ? PRD_000339 H10 H10 H 0 1 N N N 6.259 23.380 -12.993 2.197 -0.133 2.791 VAL 2 HB polymer 1 1 50 ? ? ? PRD_000339 H11 H11 H 0 0 N N N 6.629 23.911 -15.364 5.240 -0.360 2.802 VAL 2 HG11 polymer 1 1 51 ? ? ? PRD_000339 H12 H12 H 0 0 N N N 7.479 25.079 -14.297 4.198 -0.318 4.244 VAL 2 HG12 polymer 1 1 52 ? ? ? PRD_000339 H13 H13 H 0 0 N N N 8.403 23.776 -15.118 4.099 -1.690 3.114 VAL 2 HG13 polymer 1 1 53 ? ? ? PRD_000339 H14 H14 H 0 0 N N N 6.367 21.584 -14.729 2.586 2.157 2.015 VAL 2 HG21 polymer 1 1 54 ? ? ? PRD_000339 H15 H15 H 0 0 N N N 8.140 21.445 -14.471 3.428 1.914 3.565 VAL 2 HG22 polymer 1 1 55 ? ? ? PRD_000339 H16 H16 H 0 0 N N N 7.002 21.003 -13.153 4.347 1.897 2.040 VAL 2 HG23 polymer 1 1 56 ? ? ? PRD_000339 H17 H17 H 0 1 N N N 8.854 25.577 -11.349 0.750 -1.041 0.733 ALA 3 H polymer 1 1 57 ? ? ? PRD_000339 H18 H18 H 0 1 N N N 11.433 26.280 -12.654 -0.093 1.365 -0.692 ALA 3 HA polymer 1 1 58 ? ? ? PRD_000339 H19 H19 H 0 1 N N N 10.360 28.445 -13.396 0.885 -0.024 -2.499 ALA 3 HB1 polymer 1 1 59 ? ? ? PRD_000339 H20 H20 H 0 1 N N N 9.590 27.012 -14.156 -0.160 -1.383 -2.020 ALA 3 HB2 polymer 1 1 60 ? ? ? PRD_000339 H21 H21 H 0 1 N N N 8.779 27.848 -12.789 -0.882 0.105 -2.677 ALA 3 HB3 polymer 1 1 61 ? ? ? PRD_000339 H22 H22 H 0 1 N N N 12.690 27.731 -11.546 -2.619 0.818 -1.454 ARG 4 H polymer 1 1 62 ? ? ? PRD_000339 H23 H23 H 0 1 N N N 13.605 29.045 -9.868 -3.860 -0.074 1.035 ARG 4 HA polymer 1 1 63 ? ? ? PRD_000339 H24 H24 H 0 1 N N N 11.372 30.322 -10.148 -5.023 1.002 -1.572 ARG 4 HB2 polymer 1 1 64 ? ? ? PRD_000339 H25 H25 H 0 1 N N N 10.791 29.376 -8.736 -5.980 0.616 -0.122 ARG 4 HB3 polymer 1 1 65 ? ? ? PRD_000339 H26 H26 H 0 1 N N N 11.530 31.537 -7.987 -4.650 2.246 1.190 ARG 4 HG2 polymer 1 1 66 ? ? ? PRD_000339 H27 H27 H 0 1 N N N 12.683 30.289 -7.404 -3.692 2.632 -0.261 ARG 4 HG3 polymer 1 1 67 ? ? ? PRD_000339 H28 H28 H 0 1 N N N 14.409 31.176 -8.562 -5.751 3.387 -1.418 ARG 4 HD2 polymer 1 1 68 ? ? ? PRD_000339 H29 H29 H 0 1 N N N 13.410 31.438 -10.031 -6.708 3.001 0.032 ARG 4 HD3 polymer 1 1 69 ? ? ? PRD_000339 H30 H30 H 0 1 N N N 12.556 33.402 -8.324 -4.621 4.750 0.782 ARG 4 HE polymer 1 1 70 ? ? ? PRD_000339 H31 H31 H 0 0 N N N 16.383 33.999 -9.379 -7.523 4.682 -1.151 ARG 4 HH11 polymer 1 1 71 ? ? ? PRD_000339 H32 H32 H 0 0 N N N 15.724 32.398 -9.426 -7.889 6.311 -0.959 ARG 4 HH12 polymer 1 1 72 ? ? ? PRD_000339 H33 H33 H 0 0 N N N 15.090 35.755 -8.711 -5.144 7.014 1.039 ARG 4 HH21 polymer 1 1 73 ? ? ? PRD_000339 H34 H34 H 0 0 N N N 13.441 35.499 -8.248 -6.512 7.660 0.308 ARG 4 HH22 polymer 1 1 74 ? ? ? PRD_000339 H35 H35 H 0 1 N N N 11.288 26.631 -8.913 -6.075 -1.508 0.490 SER 5 H polymer 1 1 75 ? ? ? PRD_000339 H36 H36 H 0 1 N N N 11.840 25.330 -7.040 -5.541 -3.476 -1.600 SER 5 HA polymer 1 1 76 ? ? ? PRD_000339 H37 H37 H 0 1 N N N 13.268 25.981 -5.627 -5.440 -5.384 -0.069 SER 5 HB2 polymer 1 1 77 ? ? ? PRD_000339 H38 H38 H 0 1 N N N 12.757 27.702 -5.682 -4.150 -4.231 0.351 SER 5 HB3 polymer 1 1 78 ? ? ? PRD_000339 H39 H39 H 0 1 N N N 10.812 26.130 -4.661 -5.389 -4.919 2.273 SER 5 HG polymer 1 1 79 ? ? ? PRD_000339 H40 H40 H 0 1 N Y N 8.325 25.891 -7.050 -8.922 -4.671 -0.832 SER 5 HXT polymer 1 1 80 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_000339 C1 O1 DOUB N N 1 PRD_000339 C1 O2 SING N N 2 PRD_000339 O2 C2 SING N N 3 PRD_000339 C2 C3 SING N N 4 PRD_000339 C2 H1 SING N N 5 PRD_000339 C2 H2 SING N N 6 PRD_000339 C3 C4 DOUB Y N 7 PRD_000339 C3 C8 SING Y N 8 PRD_000339 C4 C5 SING Y N 9 PRD_000339 C4 H3 SING N N 10 PRD_000339 C5 C6 DOUB Y N 11 PRD_000339 C5 H4 SING N N 12 PRD_000339 C6 C7 SING Y N 13 PRD_000339 C6 H5 SING N N 14 PRD_000339 C7 C8 DOUB Y N 15 PRD_000339 C7 H6 SING N N 16 PRD_000339 C8 H7 SING N N 17 PRD_000339 N1 C9 SING N N 18 PRD_000339 N1 H8 SING N N 19 PRD_000339 C9 C10 SING N N 20 PRD_000339 C9 C11 SING N N 21 PRD_000339 C9 H9 SING N N 22 PRD_000339 C10 O3 DOUB N N 23 PRD_000339 C11 C12 SING N N 24 PRD_000339 C11 C13 SING N N 25 PRD_000339 C11 H10 SING N N 26 PRD_000339 C12 H11 SING N N 27 PRD_000339 C12 H12 SING N N 28 PRD_000339 C12 H13 SING N N 29 PRD_000339 C13 H14 SING N N 30 PRD_000339 C13 H15 SING N N 31 PRD_000339 C13 H16 SING N N 32 PRD_000339 N2 C14 SING N N 33 PRD_000339 N2 H17 SING N N 34 PRD_000339 C14 C15 SING N N 35 PRD_000339 C14 C16 SING N N 36 PRD_000339 C14 H18 SING N N 37 PRD_000339 C15 O4 DOUB N N 38 PRD_000339 C16 H19 SING N N 39 PRD_000339 C16 H20 SING N N 40 PRD_000339 C16 H21 SING N N 41 PRD_000339 N3 C17 SING N N 42 PRD_000339 N3 H22 SING N N 43 PRD_000339 C17 C18 SING N N 44 PRD_000339 C17 C19 SING N N 45 PRD_000339 C17 H23 SING N N 46 PRD_000339 C18 O5 DOUB N N 47 PRD_000339 C19 C20 SING N N 48 PRD_000339 C19 H24 SING N N 49 PRD_000339 C19 H25 SING N N 50 PRD_000339 C20 C21 SING N N 51 PRD_000339 C20 H26 SING N N 52 PRD_000339 C20 H27 SING N N 53 PRD_000339 C21 N4 SING N N 54 PRD_000339 C21 H28 SING N N 55 PRD_000339 C21 H29 SING N N 56 PRD_000339 N4 C22 SING N N 57 PRD_000339 N4 H30 SING N N 58 PRD_000339 C22 N5 SING N N 59 PRD_000339 C22 N6 DOUB N N 60 PRD_000339 N5 H31 SING N N 61 PRD_000339 N5 H32 SING N N 62 PRD_000339 N6 H33 SING N N 63 PRD_000339 N6 H34 SING N N 64 PRD_000339 N7 C23 SING N N 65 PRD_000339 N7 H35 SING N N 66 PRD_000339 C23 C24 SING N N 67 PRD_000339 C23 C25 SING N N 68 PRD_000339 C23 H36 SING N N 69 PRD_000339 C24 O6 DOUB N N 70 PRD_000339 C24 O8 SING N N 71 PRD_000339 C25 O7 SING N N 72 PRD_000339 C25 H37 SING N N 73 PRD_000339 C25 H38 SING N N 74 PRD_000339 O7 H39 SING N N 75 PRD_000339 O8 H40 SING N N 76 PRD_000339 C1 N1 SING N N 77 PRD_000339 C10 N2 SING N N 78 PRD_000339 C15 N3 SING N N 79 PRD_000339 C18 N7 SING N N 80 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_000339 SMILES ACDLabs 12.01 "O=C(O)C(NC(=O)C(NC(=O)C(NC(=O)C(NC(=O)OCc1ccccc1)C(C)C)C)CCCNC(=[NH2+])/N)CO" PRD_000339 InChI InChI 1.03 "InChI=1S/C25H39N7O8/c1-14(2)19(32-25(39)40-13-16-8-5-4-6-9-16)22(36)29-15(3)20(34)30-17(10-7-11-28-24(26)27)21(35)31-18(12-33)23(37)38/h4-6,8-9,14-15,17-19,33H,7,10-13H2,1-3H3,(H,29,36)(H,30,34)(H,31,35)(H,32,39)(H,37,38)(H4,26,27,28)/p+1/t15-,17+,18-,19-/m0/s1" PRD_000339 InChIKey InChI 1.03 MYNPKTBCMZNQHW-NQYYFHDYSA-O PRD_000339 SMILES_CANONICAL CACTVS 3.370 "CC(C)[C@@H](NC(=O)OCc1ccccc1)C(=O)N[C@@H](C)C(=O)N[C@@H](CCCNC(N)=[NH2+])C(=O)N[C@@H](CO)C(O)=O" PRD_000339 SMILES CACTVS 3.370 "CC(C)[CH](NC(=O)OCc1ccccc1)C(=O)N[CH](C)C(=O)N[CH](CCCNC(N)=[NH2+])C(=O)N[CH](CO)C(O)=O" PRD_000339 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@H](C(=O)N[C@@H](CCCNC(=[NH2+])N)C(=O)N[C@@H](CO)C(=O)O)NC(=O)C(C(C)C)NC(=O)OCc1ccccc1" PRD_000339 SMILES "OpenEye OEToolkits" 1.7.6 "CC(C)C(C(=O)NC(C)C(=O)NC(CCCNC(=[NH2+])N)C(=O)NC(CO)C(=O)O)NC(=O)OCc1ccccc1" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD_000339 "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(benzyloxy)carbonyl]-L-valyl-L-alanyl-N~5~-[amino(iminio)methyl]-L-ornithyl-L-serine" PRD_000339 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[azanyl-[[(4S)-5-[[(2S)-1,3-bis(oxidanyl)-1-oxidanylidene-propan-2-yl]amino]-4-[[(2S)-2-[[3-methyl-2-(phenylmethoxycarbonylamino)butanoyl]amino]propanoyl]amino]-5-oxidanylidene-pentyl]amino]methylidene]azanium" #