data_PRDCC_000425 # _chem_comp.id PRD_000425 _chem_comp.name "Caspase-2 Inhibitor; Ac-VDVAD-Cho" _chem_comp.formula "C23 H39 N5 O10" _chem_comp.formula_weight 545.583 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_000425 C1 C1 C 0 1 N N N 22.383 15.116 48.103 8.295 1.454 -0.481 ACE 1 C polymer 1 1 1 ? ? ? PRD_000425 O1 O1 O 0 1 N N N 21.439 15.772 47.707 8.883 0.973 0.465 ACE 1 O polymer 1 1 2 ? ? ? PRD_000425 C2 C2 C 0 1 N N N 22.198 14.188 49.280 9.046 2.279 -1.494 ACE 1 CH3 polymer 1 1 3 ? ? ? PRD_000425 N1 N1 N 0 1 N N N 23.620 15.179 47.492 6.972 1.246 -0.628 VAL 2 N polymer 1 1 4 ? ? ? PRD_000425 C3 C3 C 0 1 N N S 23.784 15.840 46.194 6.243 0.439 0.355 VAL 2 CA polymer 1 1 5 ? ? ? PRD_000425 C4 C4 C 0 1 N N N 23.420 14.896 45.055 5.016 -0.151 -0.291 VAL 2 C polymer 1 1 6 ? ? ? PRD_000425 O2 O2 O 0 1 N N N 23.287 13.684 45.248 4.774 0.080 -1.457 VAL 2 O polymer 1 1 7 ? ? ? PRD_000425 C5 C5 C 0 1 N N N 25.256 16.294 45.998 5.825 1.323 1.531 VAL 2 CB polymer 1 1 8 ? ? ? PRD_000425 C6 C6 C 0 1 N N N 25.676 17.244 47.111 7.071 1.923 2.187 VAL 2 CG1 polymer 1 1 9 ? ? ? PRD_000425 C7 C7 C 0 1 N N N 26.167 15.081 45.956 4.922 2.451 1.027 VAL 2 CG2 polymer 1 1 10 ? ? ? PRD_000425 N2 N2 N 0 1 N N N 23.263 15.459 43.865 4.188 -0.935 0.427 ASP 3 N polymer 1 1 11 ? ? ? PRD_000425 C8 C8 C 0 1 N N S 22.925 14.673 42.695 2.942 -1.423 -0.169 ASP 3 CA polymer 1 1 12 ? ? ? PRD_000425 C9 C9 C 0 1 N N N 24.181 14.413 41.873 1.845 -0.417 0.066 ASP 3 C polymer 1 1 13 ? ? ? PRD_000425 O3 O3 O 0 1 N N N 25.025 15.292 41.717 2.081 0.607 0.672 ASP 3 O polymer 1 1 14 ? ? ? PRD_000425 C10 C10 C 0 1 N N N 21.881 15.422 41.873 2.557 -2.757 0.475 ASP 3 CB polymer 1 1 15 ? ? ? PRD_000425 C11 C11 C 0 1 N N N 20.600 15.679 42.660 3.610 -3.788 0.162 ASP 3 CG polymer 1 1 16 ? ? ? PRD_000425 O4 O4 O 0 1 N N N 19.978 14.684 43.120 4.516 -3.517 -0.590 ASP 3 OD1 polymer 1 1 17 ? ? ? PRD_000425 O5 O5 O 0 1 N N N 20.216 16.868 42.824 3.542 -5.007 0.720 ASP 3 OD2 polymer 1 1 18 ? ? ? PRD_000425 N3 N3 N 0 1 N N N 24.316 13.196 41.364 0.601 -0.655 -0.396 VAL 4 N polymer 1 1 19 ? ? ? PRD_000425 C12 C12 C 0 1 N N S 25.470 12.847 40.552 -0.465 0.323 -0.168 VAL 4 CA polymer 1 1 20 ? ? ? PRD_000425 C13 C13 C 0 1 N N N 24.997 12.203 39.258 -1.801 -0.373 -0.200 VAL 4 C polymer 1 1 21 ? ? ? PRD_000425 O6 O6 O 0 1 N N N 23.887 11.687 39.190 -1.901 -1.469 -0.709 VAL 4 O polymer 1 1 22 ? ? ? PRD_000425 C14 C14 C 0 1 N N N 26.416 11.890 41.310 -0.420 1.391 -1.263 VAL 4 CB polymer 1 1 23 ? ? ? PRD_000425 C15 C15 C 0 1 N N N 27.010 12.601 42.522 0.881 2.187 -1.146 VAL 4 CG1 polymer 1 1 24 ? ? ? PRD_000425 C16 C16 C 0 1 N N N 25.664 10.650 41.756 -0.486 0.718 -2.635 VAL 4 CG2 polymer 1 1 25 ? ? ? PRD_000425 N4 N4 N 0 1 N N N 25.840 12.245 38.233 -2.884 0.222 0.338 ALA 5 N polymer 1 1 26 ? ? ? PRD_000425 C17 C17 C 0 1 N N S 25.481 11.681 36.943 -4.158 -0.498 0.404 ALA 5 CA polymer 1 1 27 ? ? ? PRD_000425 C18 C18 C 0 1 N N N 25.812 10.197 36.853 -5.293 0.492 0.446 ALA 5 C polymer 1 1 28 ? ? ? PRD_000425 O7 O7 O 0 1 N N N 26.606 9.680 37.635 -5.061 1.682 0.423 ALA 5 O polymer 1 1 29 ? ? ? PRD_000425 C19 C19 C 0 1 N N N 26.173 12.445 35.834 -4.190 -1.364 1.665 ALA 5 CB polymer 1 1 30 ? ? ? PRD_000425 C20 C20 C 0 1 N N N 25.875 7.879 34.234 -7.906 1.463 1.995 ASJ 6 C polymer 1 1 31 ? ? ? PRD_000425 N5 N5 N 0 1 N N N 25.161 9.519 35.912 -6.567 0.056 0.510 ASJ 6 N polymer 1 1 32 ? ? ? PRD_000425 O8 O8 O 0 1 N N N 25.819 6.490 33.868 -8.348 0.347 2.771 ASJ 6 O polymer 1 1 33 ? ? ? PRD_000425 C21 C21 C 0 1 N N S 25.363 8.093 35.670 -7.670 1.018 0.550 ASJ 6 CA polymer 1 1 34 ? ? ? PRD_000425 C22 C22 C 0 1 N N N 24.039 7.338 35.843 -8.940 0.362 0.005 ASJ 6 CB polymer 1 1 35 ? ? ? PRD_000425 C23 C23 C 0 1 N N N 23.981 6.534 37.130 -8.750 0.035 -1.453 ASJ 6 CG polymer 1 1 36 ? ? ? PRD_000425 O9 O9 O 0 1 N N N 25.025 6.026 37.585 -9.741 -0.551 -2.144 ASJ 6 OD1 polymer 1 1 37 ? ? ? PRD_000425 O10 O10 O 0 1 N N N 22.877 6.402 37.691 -7.707 0.299 -2.001 ASJ 6 OD2 polymer 1 1 38 ? ? ? PRD_000425 H1 H1 H 0 1 N N N 21.158 14.246 49.633 9.416 1.630 -2.288 ACE 1 H1 polymer 1 1 39 ? ? ? PRD_000425 H2 H2 H 0 1 N N N 22.424 13.156 48.972 8.378 3.028 -1.919 ACE 1 H2 polymer 1 1 40 ? ? ? PRD_000425 H3 H3 H 0 1 N N N 22.878 14.486 50.092 9.886 2.775 -1.009 ACE 1 H3 polymer 1 1 41 ? ? ? PRD_000425 H4 H4 H 0 1 N N N 24.414 14.768 47.941 6.501 1.631 -1.384 VAL 2 H polymer 1 1 42 ? ? ? PRD_000425 H5 H5 H 0 1 N N N 23.135 16.726 46.144 6.887 -0.364 0.714 VAL 2 HA polymer 1 1 43 ? ? ? PRD_000425 H6 H6 H 0 1 N N N 25.329 16.824 45.037 5.283 0.723 2.262 VAL 2 HB polymer 1 1 44 ? ? ? PRD_000425 H7 H7 H 0 0 N N N 26.720 17.554 46.955 6.773 2.552 3.025 VAL 2 HG11 polymer 1 1 45 ? ? ? PRD_000425 H8 H8 H 0 0 N N N 25.025 18.131 47.101 7.714 1.120 2.546 VAL 2 HG12 polymer 1 1 46 ? ? ? PRD_000425 H9 H9 H 0 0 N N N 25.586 16.734 48.081 7.613 2.523 1.456 VAL 2 HG13 polymer 1 1 47 ? ? ? PRD_000425 H10 H10 H 0 0 N N N 27.208 15.408 45.817 4.034 2.024 0.560 VAL 2 HG21 polymer 1 1 48 ? ? ? PRD_000425 H11 H11 H 0 0 N N N 26.081 14.525 46.901 4.624 3.080 1.865 VAL 2 HG22 polymer 1 1 49 ? ? ? PRD_000425 H12 H12 H 0 0 N N N 25.873 14.430 45.119 5.464 3.051 0.296 VAL 2 HG23 polymer 1 1 50 ? ? ? PRD_000425 H13 H13 H 0 1 N N N 23.380 16.448 43.773 4.417 -1.176 1.338 ASP 3 H polymer 1 1 51 ? ? ? PRD_000425 H14 H14 H 0 1 N N N 22.501 13.707 43.007 3.082 -1.564 -1.240 ASP 3 HA polymer 1 1 52 ? ? ? PRD_000425 H15 H15 H 0 1 N N N 22.304 16.388 41.560 2.481 -2.630 1.555 ASP 3 HB2 polymer 1 1 53 ? ? ? PRD_000425 H16 H16 H 0 1 N N N 21.635 14.824 40.983 1.596 -3.087 0.080 ASP 3 HB3 polymer 1 1 54 ? ? ? PRD_000425 H17 H17 H 0 1 N N N 19.413 16.875 43.332 4.241 -5.635 0.489 ASP 3 HD2 polymer 1 1 55 ? ? ? PRD_000425 H18 H18 H 0 1 N N N 23.613 12.508 41.542 0.413 -1.474 -0.881 VAL 4 H polymer 1 1 56 ? ? ? PRD_000425 H19 H19 H 0 1 N N N 26.031 13.760 40.303 -0.324 0.794 0.805 VAL 4 HA polymer 1 1 57 ? ? ? PRD_000425 H20 H20 H 0 1 N N N 27.232 11.592 40.635 -1.270 2.065 -1.148 VAL 4 HB polymer 1 1 58 ? ? ? PRD_000425 H21 H21 H 0 0 N N N 27.682 11.915 43.057 1.725 1.541 -1.388 VAL 4 HG11 polymer 1 1 59 ? ? ? PRD_000425 H22 H22 H 0 0 N N N 27.576 13.483 42.188 0.857 3.027 -1.840 VAL 4 HG12 polymer 1 1 60 ? ? ? PRD_000425 H23 H23 H 0 0 N N N 26.199 12.919 43.194 0.989 2.560 -0.128 VAL 4 HG13 polymer 1 1 61 ? ? ? PRD_000425 H24 H24 H 0 0 N N N 26.349 9.978 42.294 -1.413 0.151 -2.718 VAL 4 HG21 polymer 1 1 62 ? ? ? PRD_000425 H25 H25 H 0 0 N N N 24.839 10.942 42.422 -0.454 1.479 -3.415 VAL 4 HG22 polymer 1 1 63 ? ? ? PRD_000425 H26 H26 H 0 0 N N N 25.258 10.131 40.875 0.363 0.044 -2.750 VAL 4 HG23 polymer 1 1 64 ? ? ? PRD_000425 H27 H27 H 0 1 N N N 26.737 12.672 38.351 -2.820 1.127 0.681 ALA 5 H polymer 1 1 65 ? ? ? PRD_000425 H28 H28 H 0 1 N N N 24.396 11.791 36.802 -4.263 -1.133 -0.475 ALA 5 HA polymer 1 1 66 ? ? ? PRD_000425 H29 H29 H 0 1 N N N 25.896 12.012 34.862 -5.138 -1.900 1.714 ALA 5 HB1 polymer 1 1 67 ? ? ? PRD_000425 H30 H30 H 0 1 N N N 25.863 13.500 35.867 -3.369 -2.080 1.635 ALA 5 HB2 polymer 1 1 68 ? ? ? PRD_000425 H31 H31 H 0 1 N N N 27.263 12.379 35.968 -4.085 -0.729 2.545 ALA 5 HB3 polymer 1 1 69 ? ? ? PRD_000425 H32 H32 H 0 1 N N N 26.917 8.227 34.168 -8.666 2.244 2.016 ASJ 6 H3 polymer 1 1 70 ? ? ? PRD_000425 H33 H33 H 0 1 N Y N 25.250 8.459 33.539 -6.976 1.850 2.412 ASJ 6 HAA polymer 1 1 71 ? ? ? PRD_000425 H34 H34 H 0 1 N N N 24.501 10.009 35.343 -6.753 -0.896 0.528 ASJ 6 H polymer 1 1 72 ? ? ? PRD_000425 H35 H35 H 0 1 N N N 26.139 6.383 32.980 -8.518 0.557 3.700 ASJ 6 HO polymer 1 1 73 ? ? ? PRD_000425 H36 H36 H 0 1 N N N 26.102 7.690 36.378 -7.419 1.885 -0.060 ASJ 6 HA polymer 1 1 74 ? ? ? PRD_000425 H37 H37 H 0 1 N N N 23.217 8.068 35.848 -9.142 -0.555 0.560 ASJ 6 HB polymer 1 1 75 ? ? ? PRD_000425 H38 H38 H 0 1 N N N 23.913 6.650 34.994 -9.780 1.047 0.118 ASJ 6 HBA polymer 1 1 76 ? ? ? PRD_000425 H39 H39 H 0 0 N N N 24.825 5.554 38.385 -9.573 -0.741 -3.077 ASJ 6 HOD1 polymer 1 1 77 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_000425 C1 O1 DOUB N N 1 PRD_000425 C1 C2 SING N N 2 PRD_000425 C2 H1 SING N N 3 PRD_000425 C2 H2 SING N N 4 PRD_000425 C2 H3 SING N N 5 PRD_000425 N1 C3 SING N N 6 PRD_000425 N1 H4 SING N N 7 PRD_000425 C3 C4 SING N N 8 PRD_000425 C3 C5 SING N N 9 PRD_000425 C3 H5 SING N N 10 PRD_000425 C4 O2 DOUB N N 11 PRD_000425 C5 C6 SING N N 12 PRD_000425 C5 C7 SING N N 13 PRD_000425 C5 H6 SING N N 14 PRD_000425 C6 H7 SING N N 15 PRD_000425 C6 H8 SING N N 16 PRD_000425 C6 H9 SING N N 17 PRD_000425 C7 H10 SING N N 18 PRD_000425 C7 H11 SING N N 19 PRD_000425 C7 H12 SING N N 20 PRD_000425 N2 C8 SING N N 21 PRD_000425 N2 H13 SING N N 22 PRD_000425 C8 C9 SING N N 23 PRD_000425 C8 C10 SING N N 24 PRD_000425 C8 H14 SING N N 25 PRD_000425 C9 O3 DOUB N N 26 PRD_000425 C10 C11 SING N N 27 PRD_000425 C10 H15 SING N N 28 PRD_000425 C10 H16 SING N N 29 PRD_000425 C11 O4 DOUB N N 30 PRD_000425 C11 O5 SING N N 31 PRD_000425 O5 H17 SING N N 32 PRD_000425 N3 C12 SING N N 33 PRD_000425 N3 H18 SING N N 34 PRD_000425 C12 C13 SING N N 35 PRD_000425 C12 C14 SING N N 36 PRD_000425 C12 H19 SING N N 37 PRD_000425 C13 O6 DOUB N N 38 PRD_000425 C14 C15 SING N N 39 PRD_000425 C14 C16 SING N N 40 PRD_000425 C14 H20 SING N N 41 PRD_000425 C15 H21 SING N N 42 PRD_000425 C15 H22 SING N N 43 PRD_000425 C15 H23 SING N N 44 PRD_000425 C16 H24 SING N N 45 PRD_000425 C16 H25 SING N N 46 PRD_000425 C16 H26 SING N N 47 PRD_000425 N4 C17 SING N N 48 PRD_000425 N4 H27 SING N N 49 PRD_000425 C17 C18 SING N N 50 PRD_000425 C17 C19 SING N N 51 PRD_000425 C17 H28 SING N N 52 PRD_000425 C18 O7 DOUB N N 53 PRD_000425 C19 H29 SING N N 54 PRD_000425 C19 H30 SING N N 55 PRD_000425 C19 H31 SING N N 56 PRD_000425 C20 O8 SING N N 57 PRD_000425 C20 C21 SING N N 58 PRD_000425 C20 H32 SING N N 59 PRD_000425 C20 H33 SING N N 60 PRD_000425 C21 N5 SING N N 61 PRD_000425 N5 H34 SING N N 62 PRD_000425 O8 H35 SING N N 63 PRD_000425 C22 C21 SING N N 64 PRD_000425 C21 H36 SING N N 65 PRD_000425 C22 C23 SING N N 66 PRD_000425 C22 H37 SING N N 67 PRD_000425 C22 H38 SING N N 68 PRD_000425 C23 O10 DOUB N N 69 PRD_000425 C23 O9 SING N N 70 PRD_000425 O9 H39 SING N N 71 PRD_000425 C1 N1 SING N N 72 PRD_000425 N5 C18 SING N N 73 PRD_000425 C4 N2 SING N N 74 PRD_000425 C9 N3 SING N N 75 PRD_000425 C13 N4 SING N N 76 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_000425 SMILES ACDLabs 12.01 "O=C(NC(CC(=O)O)CO)C(NC(=O)C(NC(=O)C(NC(=O)C(NC(=O)C)C(C)C)CC(=O)O)C(C)C)C" PRD_000425 InChI InChI 1.03 "InChI=1S/C23H39N5O10/c1-10(2)18(25-13(6)30)23(38)27-15(8-17(33)34)21(36)28-19(11(3)4)22(37)24-12(5)20(35)26-14(9-29)7-16(31)32/h10-12,14-15,18-19,29H,7-9H2,1-6H3,(H,24,37)(H,25,30)(H,26,35)(H,27,38)(H,28,36)(H,31,32)(H,33,34)/t12-,14+,15?,18?,19?/m0/s1" PRD_000425 InChIKey InChI 1.03 GMNMHWUHFJLGLK-BPIPLQBOSA-N PRD_000425 SMILES_CANONICAL CACTVS 3.370 "CC(C)[C@H](NC(C)=O)C(=O)N[C@@H](CC(O)=O)C(=O)N[C@@H](C(C)C)C(=O)N[C@@H](C)C(=O)N[C@H](CO)CC(O)=O" PRD_000425 SMILES CACTVS 3.370 "CC(C)[CH](NC(C)=O)C(=O)N[CH](CC(O)=O)C(=O)N[CH](C(C)C)C(=O)N[CH](C)C(=O)N[CH](CO)CC(O)=O" PRD_000425 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@H](C(=O)N[C@@H](CC(=O)O)CO)NC(=O)[C@H](C(C)C)NC(=O)[C@H](CC(=O)O)NC(=O)[C@H](C(C)C)NC(=O)C" PRD_000425 SMILES "OpenEye OEToolkits" 1.7.6 "CC(C)C(C(=O)NC(CC(=O)O)C(=O)NC(C(C)C)C(=O)NC(C)C(=O)NC(CC(=O)O)CO)NC(=O)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD_000425 "SYSTEMATIC NAME" ACDLabs 12.01 "N-acetyl-L-valyl-L-alpha-aspartyl-L-valyl-N-[(2R)-1-carboxy-3-hydroxypropan-2-yl]-L-alaninamide" PRD_000425 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(3S)-3-[[(2S)-2-acetamido-3-methyl-butanoyl]amino]-4-[[(2S)-1-[[(2S)-1-[[(2S)-1,4-bis(oxidanyl)-4-oxidanylidene-butan-2-yl]amino]-1-oxidanylidene-propan-2-yl]amino]-3-methyl-1-oxidanylidene-butan-2-yl]amino]-4-oxidanylidene-butanoic acid" #