data_PRDCC_000616 # _chem_comp.id PRD_000616 _chem_comp.name 3-cyclohexyl-D-alanyl-L-prolyl-N~2~-methyl-L-arginine _chem_comp.formula "C21 H38 N6 O4" _chem_comp.formula_weight 438.564 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_pcm ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_000616 C1 C1 C 0 1 N N N 8.899 -14.036 11.175 5.316 -1.193 -0.139 ZAL 1 C1 polymer 1 1 1 ? ? ? PRD_000616 C2 C2 C 0 1 N N N 7.801 -15.080 11.589 6.215 -1.788 0.946 ZAL 1 C2 polymer 1 1 2 ? ? ? PRD_000616 C3 C3 C 0 1 N N N 6.403 -14.393 11.750 7.635 -1.951 0.399 ZAL 1 C3 polymer 1 1 3 ? ? ? PRD_000616 C4 C4 C 0 1 N N N 6.059 -13.339 10.635 8.179 -0.584 -0.022 ZAL 1 C4 polymer 1 1 4 ? ? ? PRD_000616 C5 C5 C 0 1 N N N 7.014 -13.405 9.399 7.280 0.011 -1.107 ZAL 1 C5 polymer 1 1 5 ? ? ? PRD_000616 C6 C6 C 0 1 N N N 8.532 -13.388 9.789 5.860 0.174 -0.560 ZAL 1 C6 polymer 1 1 6 ? ? ? PRD_000616 N1 N1 N 0 1 N N N 12.210 -15.763 12.364 2.872 -1.594 -1.744 ZAL 1 N polymer 1 1 7 ? ? ? PRD_000616 C7 C7 C 0 1 N N R 10.902 -15.071 12.493 2.970 -0.552 -0.712 ZAL 1 CA polymer 1 1 8 ? ? ? PRD_000616 C8 C8 C 0 1 N N N 10.304 -14.731 11.091 3.896 -1.030 0.408 ZAL 1 CB polymer 1 1 9 ? ? ? PRD_000616 C9 C9 C 0 1 N N N 11.154 -13.810 13.313 1.601 -0.274 -0.148 ZAL 1 C polymer 1 1 10 ? ? ? PRD_000616 O1 O1 O 0 1 N N N 12.128 -13.117 12.926 0.715 -1.093 -0.275 ZAL 1 O polymer 1 1 11 ? ? ? PRD_000616 N2 N2 N 0 1 N N N 10.405 -13.424 14.420 1.361 0.884 0.499 PRO 2 N polymer 1 1 12 ? ? ? PRD_000616 C10 C10 C 0 1 N N S 10.769 -12.211 15.162 0.078 1.282 1.096 PRO 2 CA polymer 1 1 13 ? ? ? PRD_000616 C11 C11 C 0 1 N N N 12.182 -12.401 15.756 -0.991 1.321 0.034 PRO 2 C polymer 1 1 14 ? ? ? PRD_000616 O2 O2 O 0 1 N N N 12.410 -13.547 16.155 -0.716 1.045 -1.114 PRO 2 O polymer 1 1 15 ? ? ? PRD_000616 C12 C12 C 0 1 N N N 9.705 -12.146 16.277 0.270 2.689 1.699 PRO 2 CB polymer 1 1 16 ? ? ? PRD_000616 C13 C13 C 0 1 N N N 8.563 -13.044 15.761 1.489 3.240 0.914 PRO 2 CG polymer 1 1 17 ? ? ? PRD_000616 C14 C14 C 0 1 N N N 9.263 -14.158 14.938 2.343 1.959 0.729 PRO 2 CD polymer 1 1 18 ? ? ? PRD_000616 N3 N3 N 0 1 N N N 13.133 -11.401 15.837 -2.253 1.664 0.361 MMO 3 N polymer 1 1 19 ? ? ? PRD_000616 C15 C15 C 0 1 N N S 14.461 -11.725 16.444 -3.292 1.702 -0.671 MMO 3 CA polymer 1 1 20 ? ? ? PRD_000616 C16 C16 C 0 1 N N N 14.731 -10.762 17.610 -3.862 3.095 -0.758 MMO 3 C polymer 1 1 21 ? ? ? PRD_000616 O3 O3 O 0 1 N N N 15.622 -9.910 17.535 -3.443 3.966 -0.033 MMO 3 O polymer 1 1 22 ? ? ? PRD_000616 C17 C17 C 0 1 N N N 15.600 -11.697 15.361 -4.406 0.717 -0.310 MMO 3 CB polymer 1 1 23 ? ? ? PRD_000616 C18 C18 C 0 1 N N N 15.302 -12.698 14.211 -3.855 -0.710 -0.343 MMO 3 CG polymer 1 1 24 ? ? ? PRD_000616 C19 C19 C 0 1 N N N 16.434 -12.730 13.160 -4.969 -1.695 0.018 MMO 3 CD polymer 1 1 25 ? ? ? PRD_000616 N4 N4 N 0 1 N N N 16.663 -11.409 12.544 -4.441 -3.061 -0.014 MMO 3 NE polymer 1 1 26 ? ? ? PRD_000616 C20 C20 C 0 1 N N N 17.663 -11.179 11.711 -5.265 -4.123 0.278 MMO 3 CZ polymer 1 1 27 ? ? ? PRD_000616 N5 N5 N 0 1 N N N 18.536 -12.110 11.361 -4.769 -5.405 0.248 MMO 3 NH2 polymer 1 1 28 ? ? ? PRD_000616 N6 N6 N 0 1 N N N 17.800 -9.951 11.183 -6.514 -3.914 0.583 MMO 3 NH1 polymer 1 1 29 ? ? ? PRD_000616 C21 C21 C 0 1 N N N 12.809 -10.043 15.332 -2.586 1.998 1.748 MMO 3 CN polymer 1 1 30 ? ? ? PRD_000616 O4 O4 O 0 1 N Y N ? ? ? -4.835 3.368 -1.642 MMO 3 OXT polymer 1 1 31 ? ? ? PRD_000616 H1 H1 H 0 1 N N N 8.940 -13.243 11.937 5.299 -1.858 -1.002 ZAL 1 H1 polymer 1 1 32 ? ? ? PRD_000616 H2 H2 H 0 1 N N N 7.733 -15.856 10.813 6.233 -1.122 1.809 ZAL 1 H2B polymer 1 1 33 ? ? ? PRD_000616 H3 H3 H 0 1 N N N 8.087 -15.542 12.546 5.828 -2.761 1.246 ZAL 1 H2A polymer 1 1 34 ? ? ? PRD_000616 H4 H4 H 0 1 N N N 5.631 -15.177 11.731 8.276 -2.375 1.172 ZAL 1 H3 polymer 1 1 35 ? ? ? PRD_000616 H5 H5 H 0 1 N N N 6.382 -13.882 12.724 7.618 -2.616 -0.464 ZAL 1 H3A polymer 1 1 36 ? ? ? PRD_000616 H6 H6 H 0 1 N N N 5.030 -13.520 10.290 8.197 0.082 0.841 ZAL 1 H4 polymer 1 1 37 ? ? ? PRD_000616 H7 H7 H 0 1 N N N 6.127 -12.333 11.074 9.191 -0.700 -0.411 ZAL 1 H4A polymer 1 1 38 ? ? ? PRD_000616 H8 H8 H 0 1 N N N 6.806 -14.333 8.846 7.668 0.985 -1.407 ZAL 1 H5 polymer 1 1 39 ? ? ? PRD_000616 H9 H9 H 0 1 N N N 6.810 -12.539 8.753 7.263 -0.655 -1.970 ZAL 1 H5A polymer 1 1 40 ? ? ? PRD_000616 H10 H10 H 0 1 N N N 8.861 -12.339 9.811 5.220 0.598 -1.333 ZAL 1 H6 polymer 1 1 41 ? ? ? PRD_000616 H11 H11 H 0 1 N N N 9.086 -13.930 9.008 5.878 0.840 0.303 ZAL 1 H6A polymer 1 1 42 ? ? ? PRD_000616 H12 H12 H 0 1 N N N 12.570 -15.969 13.274 2.500 -2.450 -1.360 ZAL 1 H polymer 1 1 43 ? ? ? PRD_000616 H13 H13 H 0 1 N Y N 12.088 -16.614 11.854 2.317 -1.278 -2.525 ZAL 1 H2 polymer 1 1 44 ? ? ? PRD_000616 H14 H14 H 0 1 N N N 10.193 -15.716 13.032 3.373 0.359 -1.154 ZAL 1 HA polymer 1 1 45 ? ? ? PRD_000616 H15 H15 H 0 1 N N N 10.199 -15.665 10.519 3.542 -1.987 0.789 ZAL 1 HB polymer 1 1 46 ? ? ? PRD_000616 H16 H16 H 0 1 N N N 10.998 -14.056 10.568 3.899 -0.296 1.214 ZAL 1 HBA polymer 1 1 47 ? ? ? PRD_000616 H17 H17 H 0 1 N N N 10.728 -11.313 14.528 -0.202 0.576 1.878 PRO 2 HA polymer 1 1 48 ? ? ? PRD_000616 H18 H18 H 0 1 N N N 10.108 -12.533 17.224 -0.611 3.307 1.526 PRO 2 HB2 polymer 1 1 49 ? ? ? PRD_000616 H19 H19 H 0 1 N N N 9.354 -11.114 16.422 0.495 2.625 2.764 PRO 2 HB3 polymer 1 1 50 ? ? ? PRD_000616 H20 H20 H 0 1 N N N 8.004 -13.479 16.603 1.181 3.651 -0.048 PRO 2 HG2 polymer 1 1 51 ? ? ? PRD_000616 H21 H21 H 0 1 N N N 7.876 -12.467 15.124 2.027 3.985 1.500 PRO 2 HG3 polymer 1 1 52 ? ? ? PRD_000616 H22 H22 H 0 1 N N N 8.618 -14.531 14.128 2.924 1.755 1.628 PRO 2 HD2 polymer 1 1 53 ? ? ? PRD_000616 H23 H23 H 0 1 N N N 9.575 -14.999 15.575 3.001 2.062 -0.133 PRO 2 HD3 polymer 1 1 54 ? ? ? PRD_000616 H24 H24 H 0 1 N N N 14.417 -12.746 16.851 -2.860 1.426 -1.632 MMO 3 HA polymer 1 1 55 ? ? ? PRD_000616 H25 H25 H 0 0 N N N 15.674 -10.682 14.944 -4.778 0.940 0.690 MMO 3 HCB1 polymer 1 1 56 ? ? ? PRD_000616 H26 H26 H 0 0 N N N 16.554 -11.969 15.836 -5.220 0.809 -1.029 MMO 3 HCB2 polymer 1 1 57 ? ? ? PRD_000616 H27 H27 H 0 0 N N N 15.186 -13.705 14.638 -3.483 -0.932 -1.343 MMO 3 HCG1 polymer 1 1 58 ? ? ? PRD_000616 H28 H28 H 0 0 N N N 14.366 -12.400 13.715 -3.041 -0.802 0.376 MMO 3 HCG2 polymer 1 1 59 ? ? ? PRD_000616 H29 H29 H 0 0 N N N 17.363 -13.058 13.650 -5.341 -1.472 1.018 MMO 3 HCD1 polymer 1 1 60 ? ? ? PRD_000616 H30 H30 H 0 0 N N N 16.164 -13.447 12.370 -5.782 -1.603 -0.701 MMO 3 HCD2 polymer 1 1 61 ? ? ? PRD_000616 H31 H31 H 0 0 N N N 19.272 -11.890 10.720 -3.839 -5.561 0.021 MMO 3 HH21 polymer 1 1 62 ? ? ? PRD_000616 H32 H32 H 0 0 N N N 18.460 -13.033 11.737 -5.350 -6.154 0.454 MMO 3 HH22 polymer 1 1 63 ? ? ? PRD_000616 H33 H33 H 0 0 N N N 18.582 -9.895 10.563 -7.095 -4.663 0.789 MMO 3 HH11 polymer 1 1 64 ? ? ? PRD_000616 H34 H34 H 0 1 N N N 11.785 -10.035 14.931 -2.448 3.068 1.907 MMO 3 HC1 polymer 1 1 65 ? ? ? PRD_000616 H35 H35 H 0 1 N N N 12.886 -9.318 16.155 -3.624 1.732 1.947 MMO 3 HC2 polymer 1 1 66 ? ? ? PRD_000616 H36 H36 H 0 1 N N N 13.516 -9.770 14.535 -1.933 1.444 2.422 MMO 3 HC3 polymer 1 1 67 ? ? ? PRD_000616 H37 H37 H 0 1 N Y N ? ? ? -5.169 4.275 -1.661 MMO 3 HXT polymer 1 1 68 ? ? ? PRD_000616 H38 H38 H 0 1 N N N 16.038 -10.660 12.765 -3.511 -3.217 -0.241 MMO 3 HE polymer 1 1 69 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_000616 C1 C2 SING N N 1 PRD_000616 C1 C6 SING N N 2 PRD_000616 C1 C8 SING N N 3 PRD_000616 C1 H1 SING N N 4 PRD_000616 C2 C3 SING N N 5 PRD_000616 C2 H2 SING N N 6 PRD_000616 C2 H3 SING N N 7 PRD_000616 C3 C4 SING N N 8 PRD_000616 C3 H4 SING N N 9 PRD_000616 C3 H5 SING N N 10 PRD_000616 C4 C5 SING N N 11 PRD_000616 C4 H6 SING N N 12 PRD_000616 C4 H7 SING N N 13 PRD_000616 C5 C6 SING N N 14 PRD_000616 C5 H8 SING N N 15 PRD_000616 C5 H9 SING N N 16 PRD_000616 C6 H10 SING N N 17 PRD_000616 C6 H11 SING N N 18 PRD_000616 N1 C7 SING N N 19 PRD_000616 N1 H12 SING N N 20 PRD_000616 N1 H13 SING N N 21 PRD_000616 C7 C8 SING N N 22 PRD_000616 C7 C9 SING N N 23 PRD_000616 C7 H14 SING N N 24 PRD_000616 C8 H15 SING N N 25 PRD_000616 C8 H16 SING N N 26 PRD_000616 C9 O1 DOUB N N 27 PRD_000616 N2 C10 SING N N 28 PRD_000616 N2 C14 SING N N 29 PRD_000616 C10 C11 SING N N 30 PRD_000616 C10 C12 SING N N 31 PRD_000616 C10 H17 SING N N 32 PRD_000616 C11 O2 DOUB N N 33 PRD_000616 C12 C13 SING N N 34 PRD_000616 C12 H18 SING N N 35 PRD_000616 C12 H19 SING N N 36 PRD_000616 C13 C14 SING N N 37 PRD_000616 C13 H20 SING N N 38 PRD_000616 C13 H21 SING N N 39 PRD_000616 C14 H22 SING N N 40 PRD_000616 C14 H23 SING N N 41 PRD_000616 N3 C15 SING N N 42 PRD_000616 N3 C21 SING N N 43 PRD_000616 C15 C16 SING N N 44 PRD_000616 C15 C17 SING N N 45 PRD_000616 C15 H24 SING N N 46 PRD_000616 C16 O3 DOUB N N 47 PRD_000616 C17 C18 SING N N 48 PRD_000616 C17 H25 SING N N 49 PRD_000616 C17 H26 SING N N 50 PRD_000616 C18 C19 SING N N 51 PRD_000616 C18 H27 SING N N 52 PRD_000616 C18 H28 SING N N 53 PRD_000616 C19 N4 SING N N 54 PRD_000616 C19 H29 SING N N 55 PRD_000616 C19 H30 SING N N 56 PRD_000616 N4 C20 SING N N 57 PRD_000616 C20 N5 SING N N 58 PRD_000616 C20 N6 DOUB N N 59 PRD_000616 N5 H31 SING N N 60 PRD_000616 N5 H32 SING N N 61 PRD_000616 N6 H33 SING N N 62 PRD_000616 C21 H34 SING N N 63 PRD_000616 C21 H35 SING N N 64 PRD_000616 C21 H36 SING N N 65 PRD_000616 C16 O4 SING N N 66 PRD_000616 O4 H37 SING N N 67 PRD_000616 N4 H38 SING N N 68 PRD_000616 C9 N2 SING N N 69 PRD_000616 C11 N3 SING N N 70 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_000616 SMILES ACDLabs 12.01 "O=C(N(C(C(=O)O)CCCNC(=[N@H])N)C)C2N(C(=O)C(N)CC1CCCCC1)CCC2" PRD_000616 InChI InChI 1.03 "InChI=1S/C21H38N6O4/c1-26(17(20(30)31)9-5-11-25-21(23)24)19(29)16-10-6-12-27(16)18(28)15(22)13-14-7-3-2-4-8-14/h14-17H,2-13,22H2,1H3,(H,30,31)(H4,23,24,25)/t15?,16-,17+/m0/s1" PRD_000616 InChIKey InChI 1.03 YJMOXWABORLHFB-LRUHZDSUSA-N PRD_000616 SMILES_CANONICAL CACTVS 3.370 "CN([C@@H](CCCNC(N)=N)C(O)=O)C(=O)[C@@H]1CCCN1C(=O)[C@H](N)CC2CCCCC2" PRD_000616 SMILES CACTVS 3.370 "CN([CH](CCCNC(N)=N)C(O)=O)C(=O)[CH]1CCCN1C(=O)[CH](N)CC2CCCCC2" PRD_000616 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CN([C@@H](CCCNC(=N)N)C(=O)O)C(=O)[C@@H]1CCCN1C(=O)[C@@H](CC2CCCCC2)N" PRD_000616 SMILES "OpenEye OEToolkits" 1.7.6 "CN(C(CCCNC(=N)N)C(=O)O)C(=O)C1CCCN1C(=O)C(CC2CCCCC2)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD_000616 "SYSTEMATIC NAME" ACDLabs 12.01 3-cyclohexyl-D-alanyl-L-prolyl-N~2~-methyl-L-arginine PRD_000616 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-[[(2S)-1-[(2R)-2-azanyl-3-cyclohexyl-propanoyl]pyrrolidin-2-yl]carbonyl-methyl-amino]-5-carbamimidamido-pentanoic acid" #