data_PRDCC_000785 # _chem_comp.id PRD_000785 _chem_comp.name Largazole _chem_comp.formula "C21 H29 N4 O4 S3" _chem_comp.formula_weight 497.674 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_000785 C1 C1 C 0 1 N N N 1.344 -35.769 17.773 ? ? ? 02G 1 C2 polymer 1 1 1 ? ? ? PRD_000785 C2 C2 C 0 1 N N N 2.286 -30.876 19.407 ? ? ? 02G 1 C7 polymer 1 1 2 ? ? ? PRD_000785 C3 C3 C 0 1 N N N 1.934 -31.947 20.484 ? ? ? 02G 1 C6 polymer 1 1 3 ? ? ? PRD_000785 C4 C4 C 0 1 N N N 2.304 -33.328 19.984 ? ? ? 02G 1 C5 polymer 1 1 4 ? ? ? PRD_000785 C5 C5 C 0 1 N N N 1.429 -34.331 19.746 ? ? ? 02G 1 C4 polymer 1 1 5 ? ? ? PRD_000785 C6 C6 C 0 1 N N S 1.791 -35.712 19.230 ? ? ? 02G 1 CA polymer 1 1 6 ? ? ? PRD_000785 C7 C7 C 0 1 N N N 1.720 -37.049 17.059 ? ? ? 02G 1 C polymer 1 1 7 ? ? ? PRD_000785 O1 O1 O 0 1 N N N 1.188 -36.784 19.953 ? ? ? 02G 1 O2 polymer 1 1 8 ? ? ? PRD_000785 O2 O2 O 0 1 N N N 2.468 -37.867 17.534 ? ? ? 02G 1 O polymer 1 1 9 ? ? ? PRD_000785 S1 S1 S 0 1 N N N 2.278 -29.203 20.160 ? ? ? 02G 1 S polymer 1 1 10 ? ? ? PRD_000785 N1 N1 N 0 1 N N N 0.844 -37.379 16.069 ? ? ? GLY 2 N polymer 1 1 11 ? ? ? PRD_000785 C8 C8 C 0 1 N N N 1.066 -38.586 15.267 ? ? ? GLY 2 CA polymer 1 1 12 ? ? ? PRD_000785 C9 C9 C 0 1 N N N 0.446 -39.759 15.993 ? ? ? GLY 2 C polymer 1 1 13 ? ? ? PRD_000785 N2 N2 N 0 1 N N N -0.174 -39.562 17.138 ? ? ? BB9 3 N polymer 1 1 14 ? ? ? PRD_000785 C10 C10 C 0 1 N N N -0.655 -40.739 17.674 ? ? ? BB9 3 CA polymer 1 1 15 ? ? ? PRD_000785 C11 C11 C 0 1 N N N -1.372 -40.766 18.966 ? ? ? BB9 3 C polymer 1 1 16 ? ? ? PRD_000785 C12 C12 C 0 1 N N N -0.386 -41.830 16.876 ? ? ? BB9 3 CB polymer 1 1 17 ? ? ? PRD_000785 S2 S2 S 0 1 N N N 0.492 -41.367 15.446 ? ? ? BB9 3 SG polymer 1 1 18 ? ? ? PRD_000785 C13 C13 C 0 1 N N N -2.354 -41.442 21.247 ? ? ? 03Y 4 CB polymer 1 1 19 ? ? ? PRD_000785 C14 C14 C 0 1 N N N -0.826 -39.558 21.864 ? ? ? 03Y 4 C polymer 1 1 20 ? ? ? PRD_000785 C15 C15 C 0 1 N N R -2.066 -39.939 21.039 ? ? ? 03Y 4 CA polymer 1 1 21 ? ? ? PRD_000785 C16 C16 C 0 1 N N N -3.291 -39.086 21.453 ? ? ? 03Y 4 CM polymer 1 1 22 ? ? ? PRD_000785 N3 N3 N 0 1 N N N -1.664 -39.675 19.619 ? ? ? 03Y 4 N polymer 1 1 23 ? ? ? PRD_000785 O3 O3 O 0 1 N N N -0.699 -39.834 23.036 ? ? ? 03Y 4 O polymer 1 1 24 ? ? ? PRD_000785 S3 S3 S 0 1 N N N -1.418 -42.209 19.920 ? ? ? 03Y 4 SG polymer 1 1 25 ? ? ? PRD_000785 N4 N4 N 0 1 N N N 0.073 -38.770 21.212 ? ? ? VAL 5 N polymer 1 1 26 ? ? ? PRD_000785 C17 C17 C 0 1 N N S 1.292 -38.289 21.871 ? ? ? VAL 5 CA polymer 1 1 27 ? ? ? PRD_000785 C18 C18 C 0 1 N N N 1.708 -36.978 21.208 ? ? ? VAL 5 C polymer 1 1 28 ? ? ? PRD_000785 O4 O4 O 0 1 N N N 2.705 -36.404 21.584 ? ? ? VAL 5 O polymer 1 1 29 ? ? ? PRD_000785 C19 C19 C 0 1 N N N 2.429 -39.312 21.754 ? ? ? VAL 5 CB polymer 1 1 30 ? ? ? PRD_000785 C20 C20 C 0 1 N N N 2.157 -40.599 22.553 ? ? ? VAL 5 CG1 polymer 1 1 31 ? ? ? PRD_000785 C21 C21 C 0 1 N N N 2.642 -39.658 20.271 ? ? ? VAL 5 CG2 polymer 1 1 32 ? ? ? PRD_000785 H1 H1 H 0 1 N N N 0.249 -35.666 17.744 ? ? ? 02G 1 H01 polymer 1 1 33 ? ? ? PRD_000785 H2 H2 H 0 0 N N N 1.806 -34.927 17.237 ? ? ? 02G 1 H01A polymer 1 1 34 ? ? ? PRD_000785 H3 H3 H 0 1 N N N 1.542 -30.915 18.598 ? ? ? 02G 1 H02 polymer 1 1 35 ? ? ? PRD_000785 H4 H4 H 0 0 N N N 3.285 -31.086 18.997 ? ? ? 02G 1 H02A polymer 1 1 36 ? ? ? PRD_000785 H5 H5 H 0 1 N N N 2.493 -31.732 21.407 ? ? ? 02G 1 H03 polymer 1 1 37 ? ? ? PRD_000785 H6 H6 H 0 0 N N N 0.854 -31.912 20.692 ? ? ? 02G 1 H03A polymer 1 1 38 ? ? ? PRD_000785 H7 H7 H 0 1 N N N 3.350 -33.527 19.803 ? ? ? 02G 1 H04 polymer 1 1 39 ? ? ? PRD_000785 H8 H8 H 0 1 N N N 0.385 -34.133 19.939 ? ? ? 02G 1 H05 polymer 1 1 40 ? ? ? PRD_000785 H9 H9 H 0 1 N N N 2.886 -35.817 19.259 ? ? ? 02G 1 HA polymer 1 1 41 ? ? ? PRD_000785 H10 H10 H 0 0 N N N 2.584 -28.449 19.146 ? ? ? 02G 1 HS30 polymer 1 1 42 ? ? ? PRD_000785 H11 H11 H 0 1 N N N 0.050 -36.798 15.890 ? ? ? GLY 2 H polymer 1 1 43 ? ? ? PRD_000785 H12 H12 H 0 1 N N N 0.595 -38.468 14.280 ? ? ? GLY 2 HA2 polymer 1 1 44 ? ? ? PRD_000785 H13 H13 H 0 1 N N N 2.146 -38.755 15.141 ? ? ? GLY 2 HA3 polymer 1 1 45 ? ? ? PRD_000785 H14 H14 H 0 1 N N N -0.682 -42.842 17.108 ? ? ? BB9 3 HB polymer 1 1 46 ? ? ? PRD_000785 H15 H15 H 0 1 N N N -1.999 -41.782 22.231 ? ? ? 03Y 4 HB2 polymer 1 1 47 ? ? ? PRD_000785 H16 H16 H 0 1 N N N -3.428 -41.657 21.151 ? ? ? 03Y 4 HB3 polymer 1 1 48 ? ? ? PRD_000785 H17 H17 H 0 1 N N N -3.066 -38.021 21.298 ? ? ? 03Y 4 H21 polymer 1 1 49 ? ? ? PRD_000785 H18 H18 H 0 0 N N N -4.159 -39.370 20.841 ? ? ? 03Y 4 H21A polymer 1 1 50 ? ? ? PRD_000785 H19 H19 H 0 0 N N N -3.518 -39.262 22.515 ? ? ? 03Y 4 H21B polymer 1 1 51 ? ? ? PRD_000785 H20 H20 H 0 1 N N N -2.420 -39.216 19.153 ? ? ? 03Y 4 H polymer 1 1 52 ? ? ? PRD_000785 H21 H21 H 0 1 N N N -0.102 -38.513 20.262 ? ? ? VAL 5 H polymer 1 1 53 ? ? ? PRD_000785 H22 H22 H 0 1 N N N 1.090 -38.102 22.936 ? ? ? VAL 5 HA polymer 1 1 54 ? ? ? PRD_000785 H23 H23 H 0 1 N N N 3.351 -38.853 22.139 ? ? ? VAL 5 HB polymer 1 1 55 ? ? ? PRD_000785 H24 H24 H 0 0 N N N 3.003 -41.292 22.432 ? ? ? VAL 5 HG11 polymer 1 1 56 ? ? ? PRD_000785 H25 H25 H 0 0 N N N 2.036 -40.351 23.618 ? ? ? VAL 5 HG12 polymer 1 1 57 ? ? ? PRD_000785 H26 H26 H 0 0 N N N 1.237 -41.074 22.181 ? ? ? VAL 5 HG13 polymer 1 1 58 ? ? ? PRD_000785 H27 H27 H 0 0 N N N 3.456 -40.392 20.178 ? ? ? VAL 5 HG21 polymer 1 1 59 ? ? ? PRD_000785 H28 H28 H 0 0 N N N 1.716 -40.084 19.857 ? ? ? VAL 5 HG22 polymer 1 1 60 ? ? ? PRD_000785 H29 H29 H 0 0 N N N 2.906 -38.746 19.716 ? ? ? VAL 5 HG23 polymer 1 1 61 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_000785 C1 C6 SING N N 1 PRD_000785 C1 H1 SING N N 2 PRD_000785 C1 H2 SING N N 3 PRD_000785 C2 S1 SING N N 4 PRD_000785 C2 C3 SING N N 5 PRD_000785 C2 H3 SING N N 6 PRD_000785 C2 H4 SING N N 7 PRD_000785 C3 H5 SING N N 8 PRD_000785 C3 H6 SING N N 9 PRD_000785 C4 C3 SING N N 10 PRD_000785 C4 H7 SING N N 11 PRD_000785 C5 C4 DOUB N E 12 PRD_000785 C5 H8 SING N N 13 PRD_000785 C6 C5 SING N N 14 PRD_000785 C6 O1 SING N N 15 PRD_000785 C6 H9 SING N N 16 PRD_000785 C7 C1 SING N N 17 PRD_000785 C7 O2 DOUB N N 18 PRD_000785 S1 H10 SING N N 19 PRD_000785 N1 C8 SING N N 20 PRD_000785 N1 H11 SING N N 21 PRD_000785 C8 C9 SING N N 22 PRD_000785 C8 H12 SING N N 23 PRD_000785 C8 H13 SING N N 24 PRD_000785 N2 C10 SING N N 25 PRD_000785 C10 C11 SING N N 26 PRD_000785 C10 C12 DOUB N N 27 PRD_000785 C12 S2 SING N N 28 PRD_000785 C12 H14 SING N N 29 PRD_000785 C13 H15 SING N N 30 PRD_000785 C13 H16 SING N N 31 PRD_000785 C14 O3 DOUB N N 32 PRD_000785 C15 C13 SING N N 33 PRD_000785 C15 C14 SING N N 34 PRD_000785 C15 C16 SING N N 35 PRD_000785 C16 H17 SING N N 36 PRD_000785 C16 H18 SING N N 37 PRD_000785 C16 H19 SING N N 38 PRD_000785 N3 C15 SING N N 39 PRD_000785 N3 H20 SING N N 40 PRD_000785 S3 C13 SING N N 41 PRD_000785 N4 C17 SING N N 42 PRD_000785 N4 H21 SING N N 43 PRD_000785 C17 C18 SING N N 44 PRD_000785 C17 C19 SING N N 45 PRD_000785 C17 H22 SING N N 46 PRD_000785 C18 O4 DOUB N N 47 PRD_000785 C19 C20 SING N N 48 PRD_000785 C19 C21 SING N N 49 PRD_000785 C19 H23 SING N N 50 PRD_000785 C20 H24 SING N N 51 PRD_000785 C20 H25 SING N N 52 PRD_000785 C20 H26 SING N N 53 PRD_000785 C21 H27 SING N N 54 PRD_000785 C21 H28 SING N N 55 PRD_000785 C21 H29 SING N N 56 PRD_000785 C7 N1 SING N N 57 PRD_000785 O1 C18 SING N N 58 PRD_000785 C9 S2 SING N N 59 PRD_000785 C9 N2 DOUB N N 60 PRD_000785 C11 S3 SING N N 61 PRD_000785 C11 N3 SING N N 62 PRD_000785 C14 N4 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_000785 SMILES ACDLabs 12.01 "O=C3NCc1scc(n1)C2SCC(N2)(C(=O)NC(C(=O)OC(\C=C/CCS)C3)C(C)C)C" PRD_000785 InChI InChI 1.03 "InChI=1S/C21H30N4O4S3/c1-12(2)17-19(27)29-13(6-4-5-7-30)8-15(26)22-9-16-23-14(10-31-16)18-25-21(3,11-32-18)20(28)24-17/h4,6,10,12-13,17-18,25,30H,5,7-9,11H2,1-3H3,(H,22,26)(H,24,28)/t13?,17?,18-,21+/m1/s1" PRD_000785 InChIKey InChI 1.03 WMXODDMLVSBFJH-ZDYZLYPZSA-N PRD_000785 SMILES_CANONICAL CACTVS 3.370 "CC(C)[C@@H]1NC(=O)[C@]2(C)CS[C](N2)c3csc(CNC(=O)C[C@H](OC1=O)\C=C\CCS)n3" PRD_000785 SMILES CACTVS 3.370 "CC(C)[CH]1NC(=O)[C]2(C)CS[C](N2)c3csc(CNC(=O)C[CH](OC1=O)C=CCCS)n3" PRD_000785 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)[C@H]1C(=O)O[C@@H](CC(=O)NCc2nc(cs2)[C]3N[C@@](CS3)(C(=O)N1)C)C=CCCS" PRD_000785 SMILES "OpenEye OEToolkits" 1.7.6 "CC(C)C1C(=O)OC(CC(=O)NCc2nc(cs2)[C]3NC(CS3)(C(=O)N1)C)C=CCCS" # _pdbx_chem_comp_identifier.comp_id PRD_000785 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 12.01 _pdbx_chem_comp_identifier.identifier "(2R,5R,8R,11R)-5-methyl-8-(propan-2-yl)-11-[(1E)-4-sulfanylbut-1-en-1-yl]-10-oxa-3,17-dithia-7,14,19,20-tetraazatricyclo[14.2.1.1~2,5~]icosa-1(18),16(19)-diene-6,9,13-trione" #