data_PRDCC_000874 # _chem_comp.id PRD_000874 _chem_comp.name "PawS Derived Peptide 4 (PDP-4)" _chem_comp.formula "C59 H82 N18 O15 S2" _chem_comp.formula_weight 1347.524 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_000874 N1 N1 N 0 1 N N N -4.043 -0.308 -3.589 3.495 -5.710 -0.826 GLY 1 N polymer 1 1 1 ? ? ? PRD_000874 C1 C1 C 0 1 N N N -3.470 -1.034 -4.707 2.194 -6.380 -0.803 GLY 1 CA polymer 1 1 2 ? ? ? PRD_000874 C2 C2 C 0 1 N N N -2.161 -0.434 -5.179 1.457 -6.043 0.469 GLY 1 C polymer 1 1 3 ? ? ? PRD_000874 O1 O1 O 0 1 N N N -1.531 -0.949 -6.102 1.621 -6.722 1.458 GLY 1 O polymer 1 1 4 ? ? ? PRD_000874 N2 N2 N 0 1 N N N -1.750 0.657 -4.543 0.614 -4.990 0.482 SER 2 N polymer 1 1 5 ? ? ? PRD_000874 C3 C3 C 0 1 N N S -0.510 1.332 -4.906 -0.115 -4.612 1.693 SER 2 CA polymer 1 1 6 ? ? ? PRD_000874 C4 C4 C 0 1 N N N 0.662 0.789 -4.094 -1.254 -3.696 1.320 SER 2 C polymer 1 1 7 ? ? ? PRD_000874 O2 O2 O 0 1 N N N 1.472 1.551 -3.563 -1.225 -3.109 0.259 SER 2 O polymer 1 1 8 ? ? ? PRD_000874 C5 C5 C 0 1 N N N -0.640 2.841 -4.688 0.825 -3.877 2.652 SER 2 CB polymer 1 1 9 ? ? ? PRD_000874 O3 O3 O 0 1 N N N -1.302 3.458 -5.779 1.849 -4.771 3.093 SER 2 OG polymer 1 1 10 ? ? ? PRD_000874 N3 N3 N 0 1 N N N 0.746 -0.533 -3.999 -2.293 -3.536 2.159 CYS 3 N polymer 1 1 11 ? ? ? PRD_000874 C6 C6 C 0 1 N N R 1.817 -1.180 -3.252 -3.394 -2.622 1.855 CYS 3 CA polymer 1 1 12 ? ? ? PRD_000874 C7 C7 C 0 1 N N N 3.182 -0.660 -3.693 -4.137 -3.088 0.634 CYS 3 C polymer 1 1 13 ? ? ? PRD_000874 O4 O4 O 0 1 N N N 3.458 -0.548 -4.888 -3.627 -3.899 -0.112 CYS 3 O polymer 1 1 14 ? ? ? PRD_000874 C8 C8 C 0 1 N N N 1.753 -2.699 -3.440 -2.856 -1.206 1.644 CYS 3 CB polymer 1 1 15 ? ? ? PRD_000874 S1 S1 S 0 1 N N N 3.307 -3.563 -3.040 -2.529 -0.441 3.257 CYS 3 SG polymer 1 1 16 ? ? ? PRD_000874 N4 N4 N 0 1 N N N 4.030 -0.343 -2.722 -5.372 -2.616 0.367 PHE 4 N polymer 1 1 17 ? ? ? PRD_000874 C9 C9 C 0 1 N N S 5.366 0.168 -3.009 -6.113 -3.109 -0.795 PHE 4 CA polymer 1 1 18 ? ? ? PRD_000874 C10 C10 C 0 1 N N N 6.348 -0.225 -1.909 -7.198 -2.133 -1.165 PHE 4 C polymer 1 1 19 ? ? ? PRD_000874 O5 O5 O 0 1 N N N 6.664 0.576 -1.031 -8.016 -1.796 -0.335 PHE 4 O polymer 1 1 20 ? ? ? PRD_000874 C11 C11 C 0 1 N N N 5.332 1.690 -3.159 -6.748 -4.462 -0.460 PHE 4 CB polymer 1 1 21 ? ? ? PRD_000874 C12 C12 C 0 1 Y N N 4.860 2.151 -4.510 -5.663 -5.480 -0.219 PHE 4 CG polymer 1 1 22 ? ? ? PRD_000874 C13 C13 C 0 1 Y N N 5.506 1.735 -5.661 -5.158 -5.663 1.055 PHE 4 CD1 polymer 1 1 23 ? ? ? PRD_000874 C14 C14 C 0 1 Y N N 3.771 2.997 -4.624 -5.178 -6.235 -1.270 PHE 4 CD2 polymer 1 1 24 ? ? ? PRD_000874 C15 C15 C 0 1 Y N N 5.074 2.155 -6.906 -4.163 -6.596 1.276 PHE 4 CE1 polymer 1 1 25 ? ? ? PRD_000874 C16 C16 C 0 1 Y N N 3.334 3.422 -5.866 -4.183 -7.168 -1.048 PHE 4 CE2 polymer 1 1 26 ? ? ? PRD_000874 C17 C17 C 0 1 Y N N 3.989 3.000 -7.007 -3.674 -7.348 0.224 PHE 4 CZ polymer 1 1 27 ? ? ? PRD_000874 N5 N5 N 0 1 N N N 6.824 -1.466 -1.964 -7.262 -1.637 -2.417 GLY 5 N polymer 1 1 28 ? ? ? PRD_000874 C18 C18 C 0 1 N N N 7.762 -1.943 -0.966 -8.349 -0.734 -2.812 GLY 5 CA polymer 1 1 29 ? ? ? PRD_000874 C19 C19 C 0 1 N N N 7.259 -1.739 0.449 -7.797 0.366 -3.669 GLY 5 C polymer 1 1 30 ? ? ? PRD_000874 O6 O6 O 0 1 N N N 6.360 -2.446 0.905 -8.148 0.402 -4.845 GLY 5 O polymer 1 1 31 ? ? ? PRD_000874 N6 N6 N 0 1 N N N 7.842 -0.770 1.148 -6.962 1.311 -3.244 ALA 6 N polymer 1 1 32 ? ? ? PRD_000874 C20 C20 C 0 1 N N S 7.447 -0.473 2.519 -7.238 2.325 -2.244 ALA 6 CA polymer 1 1 33 ? ? ? PRD_000874 C21 C21 C 0 1 N N N 5.997 -0.009 2.586 -6.044 3.244 -2.122 ALA 6 C polymer 1 1 34 ? ? ? PRD_000874 O7 O7 O 0 1 N N N 5.388 0.010 3.656 -6.028 4.275 -2.761 ALA 6 O polymer 1 1 35 ? ? ? PRD_000874 C22 C22 C 0 1 N N N 8.368 0.580 3.117 -7.532 1.706 -0.878 ALA 6 CB polymer 1 1 36 ? ? ? PRD_000874 N7 N7 N 0 1 N N N 5.447 0.365 1.435 -5.008 2.898 -1.337 PHE 7 N polymer 1 1 37 ? ? ? PRD_000874 C23 C23 C 0 1 N N S 4.067 0.830 1.362 -3.977 3.865 -0.955 PHE 7 CA polymer 1 1 38 ? ? ? PRD_000874 C24 C24 C 0 1 N N N 3.185 -0.189 0.646 -3.040 3.210 0.036 PHE 7 C polymer 1 1 39 ? ? ? PRD_000874 O8 O8 O 0 1 N N N 2.264 0.175 -0.085 -3.215 2.045 0.315 PHE 7 O polymer 1 1 40 ? ? ? PRD_000874 C25 C25 C 0 1 N N N 3.998 2.177 0.640 -4.631 5.074 -0.281 PHE 7 CB polymer 1 1 41 ? ? ? PRD_000874 C26 C26 C 0 1 Y N N 4.398 3.341 1.502 -5.389 4.620 0.940 PHE 7 CG polymer 1 1 42 ? ? ? PRD_000874 C27 C27 C 0 1 Y N N 3.741 3.593 2.696 -4.727 4.451 2.142 PHE 7 CD1 polymer 1 1 43 ? ? ? PRD_000874 C28 C28 C 0 1 Y N N 5.430 4.181 1.118 -6.748 4.378 0.860 PHE 7 CD2 polymer 1 1 44 ? ? ? PRD_000874 C29 C29 C 0 1 Y N N 4.107 4.664 3.489 -5.422 4.034 3.261 PHE 7 CE1 polymer 1 1 45 ? ? ? PRD_000874 C30 C30 C 0 1 Y N N 5.801 5.254 1.909 -7.443 3.961 1.980 PHE 7 CE2 polymer 1 1 46 ? ? ? PRD_000874 C31 C31 C 0 1 Y N N 5.139 5.493 3.096 -6.779 3.787 3.180 PHE 7 CZ polymer 1 1 47 ? ? ? PRD_000874 N8 N8 N 0 1 N N N 3.477 -1.468 0.860 -2.039 3.926 0.567 CYS 8 N polymer 1 1 48 ? ? ? PRD_000874 C32 C32 C 0 1 N N R 2.713 -2.541 0.237 -1.258 3.502 1.722 CYS 8 CA polymer 1 1 49 ? ? ? PRD_000874 C33 C33 C 0 1 N N N 1.577 -3.001 1.146 0.182 3.920 1.528 CYS 8 C polymer 1 1 50 ? ? ? PRD_000874 O9 O9 O 0 1 N N N 1.006 -4.075 0.951 0.546 5.015 1.900 CYS 8 O polymer 1 1 51 ? ? ? PRD_000874 C34 C34 C 0 1 N N N 3.628 -3.722 -0.093 -1.315 1.989 1.922 CYS 8 CB polymer 1 1 52 ? ? ? PRD_000874 S2 S2 S 0 1 N N N 3.044 -4.754 -1.475 -2.791 1.555 2.882 CYS 8 SG polymer 1 1 53 ? ? ? PRD_000874 N9 N9 N 0 1 N N N 1.255 -2.183 2.141 1.042 3.070 0.938 PHE 9 N polymer 1 1 54 ? ? ? PRD_000874 C35 C35 C 0 1 N N S 0.189 -2.505 3.082 2.449 3.431 0.745 PHE 9 CA polymer 1 1 55 ? ? ? PRD_000874 C36 C36 C 0 1 N N N -0.732 -1.307 3.291 2.946 2.788 -0.525 PHE 9 C polymer 1 1 56 ? ? ? PRD_000874 O10 O10 O 0 1 N N N -0.705 -0.665 4.341 2.171 2.162 -1.220 PHE 9 O polymer 1 1 57 ? ? ? PRD_000874 C37 C37 C 0 1 N N N 0.778 -2.948 4.423 3.269 2.923 1.934 PHE 9 CB polymer 1 1 58 ? ? ? PRD_000874 C38 C38 C 0 1 Y N N 1.666 -4.156 4.315 2.838 3.645 3.185 PHE 9 CG polymer 1 1 59 ? ? ? PRD_000874 C39 C39 C 0 1 Y N N 1.123 -5.414 4.113 1.819 3.129 3.964 PHE 9 CD1 polymer 1 1 60 ? ? ? PRD_000874 C40 C40 C 0 1 Y N N 3.042 -4.033 4.419 3.466 4.819 3.557 PHE 9 CD2 polymer 1 1 61 ? ? ? PRD_000874 C41 C41 C 0 1 Y N N 1.936 -6.529 4.016 1.425 3.791 5.112 PHE 9 CE1 polymer 1 1 62 ? ? ? PRD_000874 C42 C42 C 0 1 Y N N 3.859 -5.142 4.321 3.072 5.480 4.705 PHE 9 CE2 polymer 1 1 63 ? ? ? PRD_000874 C43 C43 C 0 1 Y N N 3.306 -6.392 4.120 2.049 4.968 5.481 PHE 9 CZ polymer 1 1 64 ? ? ? PRD_000874 N10 N10 N 0 1 N N N -1.549 -1.011 2.284 4.235 2.904 -0.895 ARG 10 N polymer 1 1 65 ? ? ? PRD_000874 C44 C44 C 0 1 N N S -2.478 0.109 2.356 4.712 2.247 -2.115 ARG 10 CA polymer 1 1 66 ? ? ? PRD_000874 C45 C45 C 0 1 N N N -3.725 -0.164 1.521 5.806 1.273 -1.761 ARG 10 C polymer 1 1 67 ? ? ? PRD_000874 O11 O11 O 0 1 N N N -3.753 -1.093 0.714 6.939 1.675 -1.594 ARG 10 O polymer 1 1 68 ? ? ? PRD_000874 C46 C46 C 0 1 N N N -1.798 1.392 1.873 5.262 3.302 -3.080 ARG 10 CB polymer 1 1 69 ? ? ? PRD_000874 C47 C47 C 0 1 N N N -1.062 2.142 2.971 4.126 4.221 -3.532 ARG 10 CG polymer 1 1 70 ? ? ? PRD_000874 C48 C48 C 0 1 N N N -1.311 3.640 2.887 4.675 5.275 -4.496 ARG 10 CD polymer 1 1 71 ? ? ? PRD_000874 N11 N11 N 0 1 N N N -2.635 4.003 3.387 3.587 6.155 -4.929 ARG 10 NE polymer 1 1 72 ? ? ? PRD_000874 C49 C49 C 0 1 N N N -3.182 5.200 3.212 3.841 7.179 -5.799 ARG 10 CZ polymer 1 1 73 ? ? ? PRD_000874 N12 N12 N 0 1 N N N -2.523 6.146 2.555 5.077 7.377 -6.253 ARG 10 NH1 polymer 1 1 74 ? ? ? PRD_000874 N13 N13 N 1 1 N N N -4.392 5.455 3.695 2.851 7.979 -6.193 ARG 10 NH2 polymer 1 1 75 ? ? ? PRD_000874 N14 N14 N 0 1 N N N -4.756 0.652 1.722 5.524 -0.045 -1.632 ARG 11 N polymer 1 1 76 ? ? ? PRD_000874 C50 C50 C 0 1 N N S -6.006 0.496 0.991 6.622 -0.967 -1.313 ARG 11 CA polymer 1 1 77 ? ? ? PRD_000874 C51 C51 C 0 1 N N N -5.998 1.334 -0.284 6.368 -2.311 -1.937 ARG 11 C polymer 1 1 78 ? ? ? PRD_000874 O12 O12 O 0 1 N N N -6.746 2.304 -0.407 7.020 -2.639 -2.911 ARG 11 O polymer 1 1 79 ? ? ? PRD_000874 C52 C52 C 0 1 N N N -7.192 0.900 1.871 6.752 -1.115 0.204 ARG 11 CB polymer 1 1 80 ? ? ? PRD_000874 C53 C53 C 0 1 N N N -7.208 0.205 3.223 7.166 0.225 0.813 ARG 11 CG polymer 1 1 81 ? ? ? PRD_000874 C54 C54 C 0 1 N N N -8.418 -0.705 3.365 7.296 0.077 2.330 ARG 11 CD polymer 1 1 82 ? ? ? PRD_000874 N15 N15 N 0 1 N N N -8.242 -1.685 4.433 7.692 1.361 2.914 ARG 11 NE polymer 1 1 83 ? ? ? PRD_000874 C55 C55 C 0 1 N N N -9.145 -2.612 4.736 7.871 1.472 4.266 ARG 11 CZ polymer 1 1 84 ? ? ? PRD_000874 N16 N16 N 0 1 N N N -10.279 -2.686 4.054 7.684 0.412 5.051 ARG 11 NH1 polymer 1 1 85 ? ? ? PRD_000874 N17 N17 N 1 1 N N N -8.911 -3.470 5.721 8.231 2.639 4.797 ARG 11 NH2 polymer 1 1 86 ? ? ? PRD_000874 N18 N18 N 0 1 N N N -5.147 0.953 -1.230 5.440 -3.158 -1.450 ASP 12 N polymer 1 1 87 ? ? ? PRD_000874 C56 C56 C 0 1 N N S -5.041 1.668 -2.497 5.290 -4.488 -2.046 ASP 12 CA polymer 1 1 88 ? ? ? PRD_000874 C57 C57 C 0 1 N N N -4.924 0.693 -3.664 3.884 -4.992 -1.892 ASP 12 C polymer 1 1 89 ? ? ? PRD_000874 O13 O13 O 0 1 N N N -5.714 0.742 -4.608 3.068 -4.737 -2.762 ASP 12 O polymer 1 1 90 ? ? ? PRD_000874 C58 C58 C 0 1 N N N -3.833 2.606 -2.477 6.277 -5.458 -1.396 ASP 12 CB polymer 1 1 91 ? ? ? PRD_000874 C59 C59 C 0 1 N N N -2.694 2.066 -1.636 6.219 -6.785 -2.108 ASP 12 CG polymer 1 1 92 ? ? ? PRD_000874 O14 O14 O 0 1 N N N -2.291 0.905 -1.860 5.545 -6.909 -3.102 ASP 12 OD1 polymer 1 1 93 ? ? ? PRD_000874 O15 O15 O 0 1 N N N -2.204 2.803 -0.754 6.917 -7.831 -1.636 ASP 12 OD2 polymer 1 1 94 ? ? ? PRD_000874 H1 H1 H 0 1 N N N -3.750 -0.584 -2.674 4.068 -5.790 -0.046 GLY 1 H polymer 1 1 95 ? ? ? PRD_000874 H2 H2 H 0 1 N N N -3.290 -2.074 -4.397 1.601 -6.062 -1.658 GLY 1 HA2 polymer 1 1 96 ? ? ? PRD_000874 H3 H3 H 0 1 N N N -4.186 -1.019 -5.542 2.346 -7.458 -0.854 GLY 1 HA3 polymer 1 1 97 ? ? ? PRD_000874 H4 H4 H 0 1 N N N -2.305 1.025 -3.797 0.488 -4.475 -0.335 SER 2 H polymer 1 1 98 ? ? ? PRD_000874 H5 H5 H 0 1 N N N -0.302 1.156 -5.972 -0.514 -5.502 2.180 SER 2 HA polymer 1 1 99 ? ? ? PRD_000874 H6 H6 H 0 1 N N N -1.216 3.023 -3.769 1.279 -3.030 2.138 SER 2 HB2 polymer 1 1 100 ? ? ? PRD_000874 H7 H7 H 0 1 N N N 0.365 3.277 -4.584 0.259 -3.520 3.512 SER 2 HB3 polymer 1 1 101 ? ? ? PRD_000874 H8 H8 H 0 1 N N N -1.371 4.392 -5.621 2.482 -4.372 3.705 SER 2 HG polymer 1 1 102 ? ? ? PRD_000874 H9 H9 H 0 1 N N N 0.057 -1.099 -4.452 -2.311 -4.045 2.990 CYS 3 H polymer 1 1 103 ? ? ? PRD_000874 H10 H10 H 0 1 N N N 1.694 -0.961 -2.181 -4.085 -2.611 2.708 CYS 3 HA polymer 1 1 104 ? ? ? PRD_000874 H11 H11 H 0 1 N N N 0.960 -3.095 -2.789 -1.930 -1.243 1.069 CYS 3 HB2 polymer 1 1 105 ? ? ? PRD_000874 H12 H12 H 0 1 N N N 1.502 -2.907 -4.491 -3.589 -0.612 1.101 CYS 3 HB3 polymer 1 1 106 ? ? ? PRD_000874 H13 H13 H 0 1 N N N 3.746 -0.457 -1.770 -5.770 -1.947 0.946 PHE 4 H polymer 1 1 107 ? ? ? PRD_000874 H14 H14 H 0 1 N N N 5.720 -0.263 -3.957 -5.431 -3.228 -1.638 PHE 4 HA polymer 1 1 108 ? ? ? PRD_000874 H15 H15 H 0 1 N N N 4.654 2.100 -2.395 -7.360 -4.364 0.436 PHE 4 HB2 polymer 1 1 109 ? ? ? PRD_000874 H16 H16 H 0 1 N N N 6.348 2.079 -2.994 -7.372 -4.786 -1.293 PHE 4 HB3 polymer 1 1 110 ? ? ? PRD_000874 H17 H17 H 0 1 N N N 6.357 1.075 -5.586 -5.541 -5.076 1.877 PHE 4 HD1 polymer 1 1 111 ? ? ? PRD_000874 H18 H18 H 0 1 N N N 3.257 3.329 -3.734 -5.576 -6.095 -2.264 PHE 4 HD2 polymer 1 1 112 ? ? ? PRD_000874 H19 H19 H 0 1 N N N 5.585 1.822 -7.797 -3.768 -6.739 2.271 PHE 4 HE1 polymer 1 1 113 ? ? ? PRD_000874 H20 H20 H 0 1 N N N 2.483 4.082 -5.943 -3.803 -7.759 -1.870 PHE 4 HE2 polymer 1 1 114 ? ? ? PRD_000874 H21 H21 H 0 1 N N N 3.651 3.332 -7.978 -2.896 -8.077 0.397 PHE 4 HZ polymer 1 1 115 ? ? ? PRD_000874 H22 H22 H 0 1 N N N 6.532 -2.076 -2.701 -6.585 -1.881 -3.068 GLY 5 H polymer 1 1 116 ? ? ? PRD_000874 H23 H23 H 0 1 N N N 7.933 -3.017 -1.128 -9.085 -1.304 -3.387 GLY 5 HA2 polymer 1 1 117 ? ? ? PRD_000874 H24 H24 H 0 1 N N N 8.710 -1.399 -1.085 -8.838 -0.333 -1.930 GLY 5 HA3 polymer 1 1 118 ? ? ? PRD_000874 H25 H25 H 0 1 N N N 8.569 -0.232 0.723 -6.058 1.323 -3.656 ALA 6 H polymer 1 1 119 ? ? ? PRD_000874 H26 H26 H 0 1 N N N 7.539 -1.388 3.122 -8.102 2.923 -2.553 ALA 6 HA polymer 1 1 120 ? ? ? PRD_000874 H27 H27 H 0 1 N N N 8.059 0.794 4.151 -6.670 1.125 -0.550 ALA 6 HB1 polymer 1 1 121 ? ? ? PRD_000874 H28 H28 H 0 1 N N N 9.403 0.206 3.114 -7.734 2.497 -0.156 ALA 6 HB2 polymer 1 1 122 ? ? ? PRD_000874 H29 H29 H 0 1 N N N 8.309 1.501 2.518 -8.401 1.053 -0.955 ALA 6 HB3 polymer 1 1 123 ? ? ? PRD_000874 H30 H30 H 0 1 N N N 5.993 0.326 0.598 -4.919 1.976 -1.031 PHE 7 H polymer 1 1 124 ? ? ? PRD_000874 H31 H31 H 0 1 N N N 3.678 0.966 2.382 -3.419 4.181 -1.830 PHE 7 HA polymer 1 1 125 ? ? ? PRD_000874 H32 H32 H 0 1 N N N 4.671 2.141 -0.230 -3.861 5.787 0.014 PHE 7 HB2 polymer 1 1 126 ? ? ? PRD_000874 H33 H33 H 0 1 N N N 2.965 2.336 0.298 -5.319 5.551 -0.979 PHE 7 HB3 polymer 1 1 127 ? ? ? PRD_000874 H34 H34 H 0 1 N N N 2.935 2.946 3.010 -3.666 4.644 2.205 PHE 7 HD1 polymer 1 1 128 ? ? ? PRD_000874 H35 H35 H 0 1 N N N 5.951 3.996 0.190 -7.266 4.515 -0.077 PHE 7 HD2 polymer 1 1 129 ? ? ? PRD_000874 H36 H36 H 0 1 N N N 3.586 4.853 4.416 -4.904 3.902 4.200 PHE 7 HE1 polymer 1 1 130 ? ? ? PRD_000874 H37 H37 H 0 1 N N N 6.607 5.903 1.598 -8.504 3.772 1.918 PHE 7 HE2 polymer 1 1 131 ? ? ? PRD_000874 H38 H38 H 0 1 N N N 5.428 6.328 3.717 -7.322 3.461 4.055 PHE 7 HZ polymer 1 1 132 ? ? ? PRD_000874 H39 H39 H 0 1 N N N 4.240 -1.700 1.464 -1.814 4.786 0.151 CYS 8 H polymer 1 1 133 ? ? ? PRD_000874 H40 H40 H 0 1 N N N 2.275 -2.173 -0.702 -1.646 3.997 2.619 CYS 8 HA polymer 1 1 134 ? ? ? PRD_000874 H41 H41 H 0 1 N N N 4.621 -3.327 -0.353 -1.336 1.485 0.958 CYS 8 HB2 polymer 1 1 135 ? ? ? PRD_000874 H42 H42 H 0 1 N N N 3.708 -4.357 0.802 -0.425 1.664 2.467 CYS 8 HB3 polymer 1 1 136 ? ? ? PRD_000874 H43 H43 H 0 1 N N N 1.756 -1.324 2.248 0.729 2.202 0.634 PHE 9 H polymer 1 1 137 ? ? ? PRD_000874 H44 H44 H 0 1 N N N -0.410 -3.335 2.679 2.544 4.513 0.669 PHE 9 HA polymer 1 1 138 ? ? ? PRD_000874 H45 H45 H 0 1 N N N 1.369 -2.117 4.836 3.105 1.853 2.057 PHE 9 HB2 polymer 1 1 139 ? ? ? PRD_000874 H46 H46 H 0 1 N N N -0.051 -3.184 5.107 4.327 3.111 1.752 PHE 9 HB3 polymer 1 1 140 ? ? ? PRD_000874 H47 H47 H 0 1 N N N 0.052 -5.526 4.030 1.332 2.210 3.676 PHE 9 HD1 polymer 1 1 141 ? ? ? PRD_000874 H48 H48 H 0 1 N N N 3.481 -3.059 4.578 4.265 5.219 2.951 PHE 9 HD2 polymer 1 1 142 ? ? ? PRD_000874 H49 H49 H 0 1 N N N 1.500 -7.505 3.859 0.628 3.388 5.721 PHE 9 HE1 polymer 1 1 143 ? ? ? PRD_000874 H50 H50 H 0 1 N N N 4.930 -5.032 4.401 3.562 6.397 4.995 PHE 9 HE2 polymer 1 1 144 ? ? ? PRD_000874 H51 H51 H 0 1 N N N 3.944 -7.260 4.044 1.741 5.485 6.378 PHE 9 HZ polymer 1 1 145 ? ? ? PRD_000874 H52 H52 H 0 1 N N N -1.525 -1.572 1.456 4.851 3.430 -0.361 ARG 10 H polymer 1 1 146 ? ? ? PRD_000874 H53 H53 H 0 1 N N N -2.787 0.256 3.401 3.891 1.714 -2.593 ARG 10 HA polymer 1 1 147 ? ? ? PRD_000874 H54 H54 H 0 1 N N N -1.075 1.128 1.088 6.028 3.892 -2.576 ARG 10 HB2 polymer 1 1 148 ? ? ? PRD_000874 H55 H55 H 0 1 N N N -2.568 2.057 1.454 5.697 2.808 -3.949 ARG 10 HB3 polymer 1 1 149 ? ? ? PRD_000874 H56 H56 H 0 1 N N N -1.410 1.776 3.948 3.360 3.631 -4.037 ARG 10 HG2 polymer 1 1 150 ? ? ? PRD_000874 H57 H57 H 0 1 N N N 0.017 1.953 2.871 3.690 4.715 -2.664 ARG 10 HG3 polymer 1 1 151 ? ? ? PRD_000874 H58 H58 H 0 1 N N N -0.550 4.161 3.486 5.440 5.865 -3.992 ARG 10 HD2 polymer 1 1 152 ? ? ? PRD_000874 H59 H59 H 0 1 N N N -1.229 3.955 1.836 5.110 4.781 -5.365 ARG 10 HD3 polymer 1 1 153 ? ? ? PRD_000874 H60 H60 H 0 1 N N N -3.157 3.313 3.888 2.686 6.011 -4.599 ARG 10 HE polymer 1 1 154 ? ? ? PRD_000874 H61 H61 H 0 0 N N N -2.938 7.047 2.425 5.798 6.794 -5.966 ARG 10 HH11 polymer 1 1 155 ? ? ? PRD_000874 H62 H62 H 0 0 N N N -1.611 5.958 2.189 5.258 8.103 -6.870 ARG 10 HH12 polymer 1 1 156 ? ? ? PRD_000874 H63 H63 H 0 0 N N N -4.803 6.357 3.563 3.032 8.706 -6.810 ARG 10 HH21 polymer 1 1 157 ? ? ? PRD_000874 H64 H64 H 0 0 N N N -4.892 4.745 4.191 1.951 7.836 -5.863 ARG 10 HH22 polymer 1 1 158 ? ? ? PRD_000874 H65 H65 H 0 1 N N N -4.671 1.390 2.391 4.617 -0.371 -1.750 ARG 11 H polymer 1 1 159 ? ? ? PRD_000874 H66 H66 H 0 1 N N N -6.131 -0.560 0.709 7.556 -0.562 -1.712 ARG 11 HA polymer 1 1 160 ? ? ? PRD_000874 H67 H67 H 0 1 N N N -7.147 1.986 2.038 5.794 -1.424 0.622 ARG 11 HB2 polymer 1 1 161 ? ? ? PRD_000874 H68 H68 H 0 1 N N N -8.122 0.649 1.339 7.507 -1.867 0.432 ARG 11 HB3 polymer 1 1 162 ? ? ? PRD_000874 H69 H69 H 0 1 N N N -6.293 -0.397 3.327 8.124 0.534 0.395 ARG 11 HG2 polymer 1 1 163 ? ? ? PRD_000874 H70 H70 H 0 1 N N N -7.238 0.966 4.016 6.410 0.977 0.585 ARG 11 HG3 polymer 1 1 164 ? ? ? PRD_000874 H71 H71 H 0 1 N N N -9.301 -0.089 3.590 6.338 -0.232 2.749 ARG 11 HD2 polymer 1 1 165 ? ? ? PRD_000874 H72 H72 H 0 1 N N N -8.575 -1.238 2.416 8.051 -0.675 2.559 ARG 11 HD3 polymer 1 1 166 ? ? ? PRD_000874 H73 H73 H 0 1 N N N -7.396 -1.657 4.965 7.828 2.132 2.342 ARG 11 HE polymer 1 1 167 ? ? ? PRD_000874 H74 H74 H 0 0 N N N -10.955 -3.387 4.282 7.422 -0.438 4.665 ARG 11 HH11 polymer 1 1 168 ? ? ? PRD_000874 H75 H75 H 0 0 N N N -10.459 -2.041 3.311 7.811 0.491 6.010 ARG 11 HH12 polymer 1 1 169 ? ? ? PRD_000874 H76 H76 H 0 0 N N N -9.589 -4.169 5.947 8.367 3.411 4.225 ARG 11 HH21 polymer 1 1 170 ? ? ? PRD_000874 H77 H77 H 0 0 N N N -8.056 -3.417 6.238 8.358 2.717 5.755 ARG 11 HH22 polymer 1 1 171 ? ? ? PRD_000874 H78 H78 H 0 1 N N N -4.564 0.156 -1.070 4.866 -2.893 -0.716 ASP 12 H polymer 1 1 172 ? ? ? PRD_000874 H79 H79 H 0 1 N N N -5.946 2.276 -2.645 5.522 -4.419 -3.116 ASP 12 HA polymer 1 1 173 ? ? ? PRD_000874 H80 H80 H 0 1 N N N -3.476 2.744 -3.508 7.286 -5.052 -1.467 ASP 12 HB2 polymer 1 1 174 ? ? ? PRD_000874 H81 H81 H 0 1 N N N -4.147 3.577 -2.065 6.015 -5.596 -0.347 ASP 12 HB3 polymer 1 1 175 ? ? ? PRD_000874 H82 H82 H 0 1 N N N -1.504 2.341 -0.308 6.848 -8.661 -2.126 ASP 12 HD2 polymer 1 1 176 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_000874 N1 C1 SING N N 1 PRD_000874 N1 H1 SING N N 2 PRD_000874 C1 C2 SING N N 3 PRD_000874 C1 H2 SING N N 4 PRD_000874 C1 H3 SING N N 5 PRD_000874 C2 O1 DOUB N N 6 PRD_000874 N2 C3 SING N N 7 PRD_000874 N2 H4 SING N N 8 PRD_000874 C3 C4 SING N N 9 PRD_000874 C3 C5 SING N N 10 PRD_000874 C3 H5 SING N N 11 PRD_000874 C4 O2 DOUB N N 12 PRD_000874 C5 O3 SING N N 13 PRD_000874 C5 H6 SING N N 14 PRD_000874 C5 H7 SING N N 15 PRD_000874 O3 H8 SING N N 16 PRD_000874 N3 C6 SING N N 17 PRD_000874 N3 H9 SING N N 18 PRD_000874 C6 C7 SING N N 19 PRD_000874 C6 C8 SING N N 20 PRD_000874 C6 H10 SING N N 21 PRD_000874 C7 O4 DOUB N N 22 PRD_000874 C8 S1 SING N N 23 PRD_000874 C8 H11 SING N N 24 PRD_000874 C8 H12 SING N N 25 PRD_000874 N4 C9 SING N N 26 PRD_000874 N4 H13 SING N N 27 PRD_000874 C9 C10 SING N N 28 PRD_000874 C9 C11 SING N N 29 PRD_000874 C9 H14 SING N N 30 PRD_000874 C10 O5 DOUB N N 31 PRD_000874 C11 C12 SING N N 32 PRD_000874 C11 H15 SING N N 33 PRD_000874 C11 H16 SING N N 34 PRD_000874 C12 C13 DOUB Y N 35 PRD_000874 C12 C14 SING Y N 36 PRD_000874 C13 C15 SING Y N 37 PRD_000874 C13 H17 SING N N 38 PRD_000874 C14 C16 DOUB Y N 39 PRD_000874 C14 H18 SING N N 40 PRD_000874 C15 C17 DOUB Y N 41 PRD_000874 C15 H19 SING N N 42 PRD_000874 C16 C17 SING Y N 43 PRD_000874 C16 H20 SING N N 44 PRD_000874 C17 H21 SING N N 45 PRD_000874 N5 C18 SING N N 46 PRD_000874 N5 H22 SING N N 47 PRD_000874 C18 C19 SING N N 48 PRD_000874 C18 H23 SING N N 49 PRD_000874 C18 H24 SING N N 50 PRD_000874 C19 O6 DOUB N N 51 PRD_000874 N6 C20 SING N N 52 PRD_000874 N6 H25 SING N N 53 PRD_000874 C20 C21 SING N N 54 PRD_000874 C20 C22 SING N N 55 PRD_000874 C20 H26 SING N N 56 PRD_000874 C21 O7 DOUB N N 57 PRD_000874 C22 H27 SING N N 58 PRD_000874 C22 H28 SING N N 59 PRD_000874 C22 H29 SING N N 60 PRD_000874 N7 C23 SING N N 61 PRD_000874 N7 H30 SING N N 62 PRD_000874 C23 C24 SING N N 63 PRD_000874 C23 C25 SING N N 64 PRD_000874 C23 H31 SING N N 65 PRD_000874 C24 O8 DOUB N N 66 PRD_000874 C25 C26 SING N N 67 PRD_000874 C25 H32 SING N N 68 PRD_000874 C25 H33 SING N N 69 PRD_000874 C26 C27 DOUB Y N 70 PRD_000874 C26 C28 SING Y N 71 PRD_000874 C27 C29 SING Y N 72 PRD_000874 C27 H34 SING N N 73 PRD_000874 C28 C30 DOUB Y N 74 PRD_000874 C28 H35 SING N N 75 PRD_000874 C29 C31 DOUB Y N 76 PRD_000874 C29 H36 SING N N 77 PRD_000874 C30 C31 SING Y N 78 PRD_000874 C30 H37 SING N N 79 PRD_000874 C31 H38 SING N N 80 PRD_000874 N8 C32 SING N N 81 PRD_000874 N8 H39 SING N N 82 PRD_000874 C32 C33 SING N N 83 PRD_000874 C32 C34 SING N N 84 PRD_000874 C32 H40 SING N N 85 PRD_000874 C33 O9 DOUB N N 86 PRD_000874 C34 S2 SING N N 87 PRD_000874 C34 H41 SING N N 88 PRD_000874 C34 H42 SING N N 89 PRD_000874 N9 C35 SING N N 90 PRD_000874 N9 H43 SING N N 91 PRD_000874 C35 C36 SING N N 92 PRD_000874 C35 C37 SING N N 93 PRD_000874 C35 H44 SING N N 94 PRD_000874 C36 O10 DOUB N N 95 PRD_000874 C37 C38 SING N N 96 PRD_000874 C37 H45 SING N N 97 PRD_000874 C37 H46 SING N N 98 PRD_000874 C38 C39 DOUB Y N 99 PRD_000874 C38 C40 SING Y N 100 PRD_000874 C39 C41 SING Y N 101 PRD_000874 C39 H47 SING N N 102 PRD_000874 C40 C42 DOUB Y N 103 PRD_000874 C40 H48 SING N N 104 PRD_000874 C41 C43 DOUB Y N 105 PRD_000874 C41 H49 SING N N 106 PRD_000874 C42 C43 SING Y N 107 PRD_000874 C42 H50 SING N N 108 PRD_000874 C43 H51 SING N N 109 PRD_000874 N10 C44 SING N N 110 PRD_000874 N10 H52 SING N N 111 PRD_000874 C44 C45 SING N N 112 PRD_000874 C44 C46 SING N N 113 PRD_000874 C44 H53 SING N N 114 PRD_000874 C45 O11 DOUB N N 115 PRD_000874 C46 C47 SING N N 116 PRD_000874 C46 H54 SING N N 117 PRD_000874 C46 H55 SING N N 118 PRD_000874 C47 C48 SING N N 119 PRD_000874 C47 H56 SING N N 120 PRD_000874 C47 H57 SING N N 121 PRD_000874 C48 N11 SING N N 122 PRD_000874 C48 H58 SING N N 123 PRD_000874 C48 H59 SING N N 124 PRD_000874 N11 C49 SING N N 125 PRD_000874 N11 H60 SING N N 126 PRD_000874 C49 N12 SING N N 127 PRD_000874 C49 N13 DOUB N N 128 PRD_000874 N12 H61 SING N N 129 PRD_000874 N12 H62 SING N N 130 PRD_000874 N13 H63 SING N N 131 PRD_000874 N13 H64 SING N N 132 PRD_000874 N14 C50 SING N N 133 PRD_000874 N14 H65 SING N N 134 PRD_000874 C50 C51 SING N N 135 PRD_000874 C50 C52 SING N N 136 PRD_000874 C50 H66 SING N N 137 PRD_000874 C51 O12 DOUB N N 138 PRD_000874 C52 C53 SING N N 139 PRD_000874 C52 H67 SING N N 140 PRD_000874 C52 H68 SING N N 141 PRD_000874 C53 C54 SING N N 142 PRD_000874 C53 H69 SING N N 143 PRD_000874 C53 H70 SING N N 144 PRD_000874 C54 N15 SING N N 145 PRD_000874 C54 H71 SING N N 146 PRD_000874 C54 H72 SING N N 147 PRD_000874 N15 C55 SING N N 148 PRD_000874 N15 H73 SING N N 149 PRD_000874 C55 N16 SING N N 150 PRD_000874 C55 N17 DOUB N N 151 PRD_000874 N16 H74 SING N N 152 PRD_000874 N16 H75 SING N N 153 PRD_000874 N17 H76 SING N N 154 PRD_000874 N17 H77 SING N N 155 PRD_000874 N18 C56 SING N N 156 PRD_000874 N18 H78 SING N N 157 PRD_000874 C56 C57 SING N N 158 PRD_000874 C56 C58 SING N N 159 PRD_000874 C56 H79 SING N N 160 PRD_000874 C57 O13 DOUB N N 161 PRD_000874 C58 C59 SING N N 162 PRD_000874 C58 H80 SING N N 163 PRD_000874 C58 H81 SING N N 164 PRD_000874 C59 O14 DOUB N N 165 PRD_000874 C59 O15 SING N N 166 PRD_000874 O15 H82 SING N N 167 PRD_000874 N1 C57 SING N N 168 PRD_000874 C2 N2 SING N N 169 PRD_000874 C4 N3 SING N N 170 PRD_000874 C7 N4 SING N N 171 PRD_000874 S1 S2 SING N N 172 PRD_000874 C10 N5 SING N N 173 PRD_000874 C19 N6 SING N N 174 PRD_000874 C21 N7 SING N N 175 PRD_000874 C24 N8 SING N N 176 PRD_000874 C33 N9 SING N N 177 PRD_000874 C36 N10 SING N N 178 PRD_000874 C45 N14 SING N N 179 PRD_000874 C51 N18 SING N N 180 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_000874 SMILES ACDLabs 12.01 "O=C(O)CC1NC(=O)C(NC(=O)C(NC(=O)C(NC(=O)C2NC(=O)C(NC(=O)C(NC(=O)CNC(=O)C(NC(=O)C(NC(=O)C(NC(=O)CNC1=O)CO)CSSC2)Cc3ccccc3)C)Cc4ccccc4)Cc5ccccc5)CCCNC(=[NH2+])\N)CCCNC(=[NH2+])\N" PRD_000874 InChI InChI 1.03 "InChI=1S/C59H80N18O15S2/c1-32-48(83)72-39(24-34-15-7-3-8-16-34)54(89)76-43-30-93-94-31-44(56(91)73-38(23-33-13-5-2-6-14-33)49(84)66-27-45(79)68-32)77-55(90)42(29-78)69-46(80)28-67-50(85)41(26-47(81)82)75-52(87)37(20-12-22-65-59(62)63)70-51(86)36(19-11-21-64-58(60)61)71-53(88)40(74-57(43)92)25-35-17-9-4-10-18-35/h2-10,13-18,32,36-44,78H,11-12,19-31H2,1H3,(H,66,84)(H,67,85)(H,68,79)(H,69,80)(H,70,86)(H,71,88)(H,72,83)(H,73,91)(H,74,92)(H,75,87)(H,76,89)(H,77,90)(H,81,82)(H4,60,61,64)(H4,62,63,65)/p+2/t32-,36-,37-,38-,39-,40-,41-,42-,43-,44-/m0/s1" PRD_000874 InChIKey InChI 1.03 NSMJGKZLXVJUIQ-YFUSJSQUSA-P PRD_000874 SMILES_CANONICAL CACTVS 3.370 "C[C@@H]1NC(=O)CNC(=O)[C@H](Cc2ccccc2)NC(=O)[C@@H]3CSSC[C@H](NC(=O)[C@H](Cc4ccccc4)NC1=O)C(=O)N[C@@H](Cc5ccccc5)C(=O)N[C@@H](CCCNC(N)=[NH2+])C(=O)N[C@@H](CCCNC(N)=[NH2+])C(=O)N[C@@H](CC(O)=O)C(=O)NCC(=O)N[C@@H](CO)C(=O)N3" PRD_000874 SMILES CACTVS 3.370 "C[CH]1NC(=O)CNC(=O)[CH](Cc2ccccc2)NC(=O)[CH]3CSSC[CH](NC(=O)[CH](Cc4ccccc4)NC1=O)C(=O)N[CH](Cc5ccccc5)C(=O)N[CH](CCCNC(N)=[NH2+])C(=O)N[CH](CCCNC(N)=[NH2+])C(=O)N[CH](CC(O)=O)C(=O)NCC(=O)N[CH](CO)C(=O)N3" PRD_000874 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@H]1C(=O)N[C@H](C(=O)N[C@H]2CSSC[C@@H](C(=O)N[C@H](C(=O)NCC(=O)N1)Cc3ccccc3)NC(=O)[C@@H](NC(=O)CNC(=O)[C@@H](NC(=O)[C@@H](NC(=O)[C@@H](NC(=O)[C@@H](NC2=O)Cc4ccccc4)CCCNC(=[NH2+])N)CCCNC(=[NH2+])N)CC(=O)O)CO)Cc5ccccc5" PRD_000874 SMILES "OpenEye OEToolkits" 1.7.6 "CC1C(=O)NC(C(=O)NC2CSSCC(C(=O)NC(C(=O)NCC(=O)N1)Cc3ccccc3)NC(=O)C(NC(=O)CNC(=O)C(NC(=O)C(NC(=O)C(NC(=O)C(NC2=O)Cc4ccccc4)CCCNC(=[NH2+])N)CCCNC(=[NH2+])N)CC(=O)O)CO)Cc5ccccc5" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD_000874 "SYSTEMATIC NAME" ACDLabs 12.01 "{[(1R,4S,10S,13S,16S,19S,22R,25S,28S,34S)-19,25,34-tribenzyl-10-(carboxymethyl)-4-(hydroxymethyl)-28-methyl-3,6,9,12,15,18,21,24,27,30,33,36-dodecaoxo-38,39-dithia-2,5,8,11,14,17,20,23,26,29,32,35-dodecaazabicyclo[20.14.4]tetracontane-13,16-diyl]bis(propane-3,1-diylimino)}bis(aminomethaniminium)" PRD_000874 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[3-[(1R,4S,7S,10S,13S,19S,22R,25S,31S,34S)-7-[3-[[azaniumylidene(azanyl)methyl]amino]propyl]-19-(hydroxymethyl)-13-(2-hydroxy-2-oxoethyl)-31-methyl-2,5,8,11,14,17,20,23,26,29,32,35-dodecakis(oxidanylidene)-4,25,34-tris(phenylmethyl)-38,39-dithia-3,6,9,12,15,18,21,24,27,30,33,36-dodecazabicyclo[20.14.4]tetracontan-10-yl]propylamino]-azanyl-methylidene]azanium" #