data_PRDCC_000911 # _chem_comp.id PRD_000911 _chem_comp.name "C4Z inhibitor" _chem_comp.formula "C27 H42 N6 O6" _chem_comp.formula_weight 546.659 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_000911 C1 C1 C 0 1 N N N -2.055 -20.883 36.345 6.045 -0.260 0.936 PHQ 1 C1 polymer 1 1 1 ? ? ? PRD_000911 O1 O1 O 0 1 N N N -2.375 -22.059 36.319 6.024 -0.795 2.027 PHQ 1 O1 polymer 1 1 2 ? ? ? PRD_000911 O2 O2 O 0 1 N N N -0.688 -20.493 36.052 7.218 -0.063 0.305 PHQ 1 O2 polymer 1 1 3 ? ? ? PRD_000911 C2 C2 C 0 1 N N N 0.277 -21.511 35.702 8.417 -0.514 0.987 PHQ 1 C2 polymer 1 1 4 ? ? ? PRD_000911 C3 C3 C 0 1 Y N N 1.431 -20.927 35.000 9.623 -0.211 0.136 PHQ 1 C3 polymer 1 1 5 ? ? ? PRD_000911 C4 C4 C 0 1 Y N N 2.488 -21.719 34.573 10.280 0.998 0.272 PHQ 1 C4 polymer 1 1 6 ? ? ? PRD_000911 C5 C5 C 0 1 Y N N 3.550 -21.114 33.912 11.386 1.275 -0.509 PHQ 1 C5 polymer 1 1 7 ? ? ? PRD_000911 C6 C6 C 0 1 Y N N 3.556 -19.740 33.682 11.836 0.344 -1.426 PHQ 1 C6 polymer 1 1 8 ? ? ? PRD_000911 C7 C7 C 0 1 Y N N 2.498 -18.946 34.114 11.180 -0.865 -1.561 PHQ 1 C7 polymer 1 1 9 ? ? ? PRD_000911 C8 C8 C 0 1 Y N N 1.431 -19.548 34.774 10.076 -1.145 -0.777 PHQ 1 C8 polymer 1 1 10 ? ? ? PRD_000911 N1 N1 N 0 1 N N N -2.908 -19.895 36.634 4.893 0.131 0.356 ALA 2 N polymer 1 1 11 ? ? ? PRD_000911 C9 C9 C 0 1 N N S -2.431 -18.501 36.640 3.616 -0.090 1.039 ALA 2 CA polymer 1 1 12 ? ? ? PRD_000911 C10 C10 C 0 1 N N N -1.460 -18.179 37.763 2.507 -0.160 0.022 ALA 2 C polymer 1 1 13 ? ? ? PRD_000911 O3 O3 O 0 1 N N N -1.472 -18.791 38.823 2.758 -0.037 -1.158 ALA 2 O polymer 1 1 14 ? ? ? PRD_000911 C11 C11 C 0 1 N N N -3.620 -17.534 36.695 3.350 1.066 2.006 ALA 2 CB polymer 1 1 15 ? ? ? PRD_000911 N2 N2 N 0 1 N N N -0.588 -17.190 37.542 1.236 -0.358 0.424 VAL 3 N polymer 1 1 16 ? ? ? PRD_000911 C12 C12 C 0 1 N N S 0.387 -16.748 38.537 0.157 -0.426 -0.566 VAL 3 CA polymer 1 1 17 ? ? ? PRD_000911 C13 C13 C 0 1 N N N 0.282 -15.257 38.685 -1.146 -0.040 0.085 VAL 3 C polymer 1 1 18 ? ? ? PRD_000911 O4 O4 O 0 1 N N N 0.656 -14.530 37.774 -1.260 -0.088 1.292 VAL 3 O polymer 1 1 19 ? ? ? PRD_000911 C14 C14 C 0 1 N N N 1.806 -17.075 38.073 0.053 -1.852 -1.109 VAL 3 CB polymer 1 1 20 ? ? ? PRD_000911 C15 C15 C 0 1 N N N 2.830 -16.154 38.726 -0.292 -2.809 0.033 VAL 3 CG1 polymer 1 1 21 ? ? ? PRD_000911 C16 C16 C 0 1 N N N 2.200 -18.500 38.423 -1.044 -1.913 -2.174 VAL 3 CG2 polymer 1 1 22 ? ? ? PRD_000911 N3 N3 N 0 1 N N N -0.241 -14.793 39.825 -2.186 0.360 -0.674 LEU 4 N polymer 1 1 23 ? ? ? PRD_000911 C17 C17 C 0 1 N N S -0.373 -13.365 40.079 -3.416 0.838 -0.038 LEU 4 CA polymer 1 1 24 ? ? ? PRD_000911 C18 C18 C 0 1 N N N 0.996 -12.750 40.016 -4.589 0.567 -0.945 LEU 4 C polymer 1 1 25 ? ? ? PRD_000911 O5 O5 O 0 1 N N N 1.882 -13.084 40.788 -4.413 0.426 -2.136 LEU 4 O polymer 1 1 26 ? ? ? PRD_000911 C19 C19 C 0 1 N N N -1.000 -13.255 41.465 -3.306 2.342 0.218 LEU 4 CB polymer 1 1 27 ? ? ? PRD_000911 C20 C20 C 0 1 N N N -2.427 -13.798 41.420 -4.585 2.840 0.895 LEU 4 CG polymer 1 1 28 ? ? ? PRD_000911 C21 C21 C 0 1 N N N -3.121 -13.679 42.773 -4.714 2.196 2.277 LEU 4 CD1 polymer 1 1 29 ? ? ? PRD_000911 C22 C22 C 0 1 N N N -3.252 -13.110 40.331 -4.524 4.361 1.045 LEU 4 CD2 polymer 1 1 30 ? ? ? PRD_000911 C23 C23 C 0 1 N N N 2.546 -9.736 39.167 -7.480 1.367 -1.978 0JU 5 C polymer 1 1 31 ? ? ? PRD_000911 N4 N4 N 0 1 N N N 3.585 -9.233 39.670 -6.933 2.501 -1.749 0JU 5 NF polymer 1 1 32 ? ? ? PRD_000911 C24 C24 C 0 1 N N S 2.509 -11.216 38.876 -6.959 0.128 -1.297 0JU 5 CA polymer 1 1 33 ? ? ? PRD_000911 N5 N5 N 0 1 N N N 1.200 -11.852 39.051 -5.832 0.483 -0.432 0JU 5 N polymer 1 1 34 ? ? ? PRD_000911 C25 C25 C 0 1 N N N 2.792 -11.462 37.398 -8.073 -0.498 -0.454 0JU 5 CB polymer 1 1 35 ? ? ? PRD_000911 C26 C26 C 0 1 N N N 4.281 -11.502 37.113 -7.583 -1.821 0.136 0JU 5 CG polymer 1 1 36 ? ? ? PRD_000911 C27 C27 C 0 1 N N N 4.480 -12.179 35.778 -8.679 -2.437 0.966 0JU 5 CD polymer 1 1 37 ? ? ? PRD_000911 O6 O6 O 0 1 N N N 3.932 -11.752 34.775 -9.747 -1.873 1.075 0JU 5 OE polymer 1 1 38 ? ? ? PRD_000911 N6 N6 N 0 1 N N N 5.253 -13.263 35.754 -8.473 -3.615 1.588 0JU 5 NE polymer 1 1 39 ? ? ? PRD_000911 H1 H1 H 0 1 N N N 0.627 -22.005 36.620 8.508 0.003 1.943 PHQ 1 H21 polymer 1 1 40 ? ? ? PRD_000911 H2 H2 H 0 1 N N N -0.204 -22.253 35.047 8.355 -1.589 1.160 PHQ 1 H22 polymer 1 1 41 ? ? ? PRD_000911 H3 H3 H 0 1 N N N 2.485 -22.784 34.751 9.928 1.725 0.988 PHQ 1 H41 polymer 1 1 42 ? ? ? PRD_000911 H4 H4 H 0 1 N N N 4.380 -21.716 33.573 11.898 2.220 -0.403 PHQ 1 H51 polymer 1 1 43 ? ? ? PRD_000911 H5 H5 H 0 1 N N N 4.389 -19.287 33.164 12.700 0.561 -2.037 PHQ 1 H61 polymer 1 1 44 ? ? ? PRD_000911 H6 H6 H 0 1 N N N 2.505 -17.880 33.940 11.532 -1.593 -2.278 PHQ 1 H71 polymer 1 1 45 ? ? ? PRD_000911 H7 H7 H 0 1 N N N 0.600 -18.947 35.113 9.566 -2.091 -0.881 PHQ 1 H81 polymer 1 1 46 ? ? ? PRD_000911 H8 H8 H 0 1 N N N -3.864 -20.101 36.845 4.909 0.557 -0.515 ALA 2 H polymer 1 1 47 ? ? ? PRD_000911 H9 H9 H 0 1 N N N -1.907 -18.318 35.690 3.659 -1.026 1.595 ALA 2 HA polymer 1 1 48 ? ? ? PRD_000911 H10 H10 H 0 1 N N N -3.251 -16.498 36.699 2.400 0.902 2.515 ALA 2 HB1 polymer 1 1 49 ? ? ? PRD_000911 H11 H11 H 0 1 N N N -4.261 -17.691 35.815 4.152 1.116 2.742 ALA 2 HB2 polymer 1 1 50 ? ? ? PRD_000911 H12 H12 H 0 1 N N N -4.201 -17.719 37.610 3.307 2.002 1.450 ALA 2 HB3 polymer 1 1 51 ? ? ? PRD_000911 H13 H13 H 0 1 N N N -0.604 -16.731 36.654 1.035 -0.456 1.368 VAL 3 H polymer 1 1 52 ? ? ? PRD_000911 H14 H14 H 0 1 N N N 0.196 -17.234 39.505 0.371 0.261 -1.385 VAL 3 HA polymer 1 1 53 ? ? ? PRD_000911 H15 H15 H 0 1 N N N 1.860 -16.948 36.982 1.005 -2.143 -1.552 VAL 3 HB polymer 1 1 54 ? ? ? PRD_000911 H16 H16 H 0 0 N N N 3.838 -16.416 38.371 -1.245 -2.519 0.476 VAL 3 HG11 polymer 1 1 55 ? ? ? PRD_000911 H17 H17 H 0 0 N N N 2.607 -15.110 38.459 -0.366 -3.826 -0.354 VAL 3 HG12 polymer 1 1 56 ? ? ? PRD_000911 H18 H18 H 0 0 N N N 2.784 -16.271 39.819 0.489 -2.766 0.792 VAL 3 HG13 polymer 1 1 57 ? ? ? PRD_000911 H19 H19 H 0 0 N N N 3.225 -18.694 38.073 -0.862 -1.146 -2.928 VAL 3 HG21 polymer 1 1 58 ? ? ? PRD_000911 H20 H20 H 0 0 N N N 2.153 -18.636 39.514 -1.038 -2.895 -2.647 VAL 3 HG22 polymer 1 1 59 ? ? ? PRD_000911 H21 H21 H 0 0 N N N 1.507 -19.202 37.936 -2.014 -1.740 -1.708 VAL 3 HG23 polymer 1 1 60 ? ? ? PRD_000911 H22 H22 H 0 1 N N N -0.549 -15.443 40.520 -2.120 0.330 -1.641 LEU 4 H polymer 1 1 61 ? ? ? PRD_000911 H23 H23 H 0 1 N N N -1.033 -12.896 39.334 -3.562 0.318 0.909 LEU 4 HA polymer 1 1 62 ? ? ? PRD_000911 H24 H24 H 0 1 N N N -0.407 -13.840 42.184 -2.452 2.539 0.867 LEU 4 HB2 polymer 1 1 63 ? ? ? PRD_000911 H25 H25 H 0 1 N N N -1.018 -12.200 41.777 -3.170 2.863 -0.729 LEU 4 HB3 polymer 1 1 64 ? ? ? PRD_000911 H26 H26 H 0 1 N N N -2.369 -14.867 41.168 -5.447 2.569 0.286 LEU 4 HG polymer 1 1 65 ? ? ? PRD_000911 H27 H27 H 0 0 N N N -4.143 -14.080 42.698 -3.887 2.521 2.908 LEU 4 HD11 polymer 1 1 66 ? ? ? PRD_000911 H28 H28 H 0 0 N N N -2.558 -14.250 43.525 -5.658 2.497 2.731 LEU 4 HD12 polymer 1 1 67 ? ? ? PRD_000911 H29 H29 H 0 0 N N N -3.163 -12.621 43.072 -4.689 1.111 2.176 LEU 4 HD13 polymer 1 1 68 ? ? ? PRD_000911 H30 H30 H 0 0 N N N -4.271 -13.524 40.326 -4.432 4.820 0.060 LEU 4 HD21 polymer 1 1 69 ? ? ? PRD_000911 H31 H31 H 0 0 N N N -3.296 -12.029 40.532 -5.436 4.715 1.527 LEU 4 HD22 polymer 1 1 70 ? ? ? PRD_000911 H32 H32 H 0 0 N N N -2.782 -13.282 39.351 -3.662 4.632 1.654 LEU 4 HD23 polymer 1 1 71 ? ? ? PRD_000911 H33 H33 H 0 1 N Y N 1.691 -9.115 38.946 -8.316 1.299 -2.659 0JU 5 H1 polymer 1 1 72 ? ? ? PRD_000911 H34 H34 H 0 1 N N N 3.491 -8.248 39.817 -7.268 3.299 -2.187 0JU 5 HNF polymer 1 1 73 ? ? ? PRD_000911 H35 H35 H 0 1 N N N 3.267 -11.731 39.484 -6.628 -0.588 -2.050 0JU 5 HA polymer 1 1 74 ? ? ? PRD_000911 H36 H36 H 0 1 N N N 0.449 -11.609 38.438 -5.981 0.657 0.511 0JU 5 H polymer 1 1 75 ? ? ? PRD_000911 H37 H37 H 0 1 N N N 2.337 -10.652 36.808 -8.342 0.183 0.353 0JU 5 H7 polymer 1 1 76 ? ? ? PRD_000911 H38 H38 H 0 1 N N N 2.347 -12.424 37.105 -8.945 -0.680 -1.082 0JU 5 H8 polymer 1 1 77 ? ? ? PRD_000911 H39 H39 H 0 1 N N N 4.797 -12.070 37.901 -7.313 -2.502 -0.672 0JU 5 H9 polymer 1 1 78 ? ? ? PRD_000911 H40 H40 H 0 1 N N N 4.682 -10.478 37.076 -6.711 -1.638 0.764 0JU 5 H10 polymer 1 1 79 ? ? ? PRD_000911 H41 H41 H 0 1 N N N 5.399 -13.754 34.895 -7.619 -4.066 1.501 0JU 5 H11 polymer 1 1 80 ? ? ? PRD_000911 H42 H42 H 0 1 N N N 5.687 -13.586 36.595 -9.179 -4.011 2.123 0JU 5 H12 polymer 1 1 81 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_000911 C1 O1 DOUB N N 1 PRD_000911 C1 O2 SING N N 2 PRD_000911 O2 C2 SING N N 3 PRD_000911 C2 C3 SING N N 4 PRD_000911 C2 H1 SING N N 5 PRD_000911 C2 H2 SING N N 6 PRD_000911 C3 C4 DOUB Y N 7 PRD_000911 C3 C8 SING Y N 8 PRD_000911 C4 C5 SING Y N 9 PRD_000911 C4 H3 SING N N 10 PRD_000911 C5 C6 DOUB Y N 11 PRD_000911 C5 H4 SING N N 12 PRD_000911 C6 C7 SING Y N 13 PRD_000911 C6 H5 SING N N 14 PRD_000911 C7 C8 DOUB Y N 15 PRD_000911 C7 H6 SING N N 16 PRD_000911 C8 H7 SING N N 17 PRD_000911 N1 C9 SING N N 18 PRD_000911 N1 H8 SING N N 19 PRD_000911 C9 C10 SING N N 20 PRD_000911 C9 C11 SING N N 21 PRD_000911 C9 H9 SING N N 22 PRD_000911 C10 O3 DOUB N N 23 PRD_000911 C11 H10 SING N N 24 PRD_000911 C11 H11 SING N N 25 PRD_000911 C11 H12 SING N N 26 PRD_000911 N2 C12 SING N N 27 PRD_000911 N2 H13 SING N N 28 PRD_000911 C12 C13 SING N N 29 PRD_000911 C12 C14 SING N N 30 PRD_000911 C12 H14 SING N N 31 PRD_000911 C13 O4 DOUB N N 32 PRD_000911 C14 C15 SING N N 33 PRD_000911 C14 C16 SING N N 34 PRD_000911 C14 H15 SING N N 35 PRD_000911 C15 H16 SING N N 36 PRD_000911 C15 H17 SING N N 37 PRD_000911 C15 H18 SING N N 38 PRD_000911 C16 H19 SING N N 39 PRD_000911 C16 H20 SING N N 40 PRD_000911 C16 H21 SING N N 41 PRD_000911 N3 C17 SING N N 42 PRD_000911 N3 H22 SING N N 43 PRD_000911 C17 C18 SING N N 44 PRD_000911 C17 C19 SING N N 45 PRD_000911 C17 H23 SING N N 46 PRD_000911 C18 O5 DOUB N N 47 PRD_000911 C19 C20 SING N N 48 PRD_000911 C19 H24 SING N N 49 PRD_000911 C19 H25 SING N N 50 PRD_000911 C20 C21 SING N N 51 PRD_000911 C20 C22 SING N N 52 PRD_000911 C20 H26 SING N N 53 PRD_000911 C21 H27 SING N N 54 PRD_000911 C21 H28 SING N N 55 PRD_000911 C21 H29 SING N N 56 PRD_000911 C22 H30 SING N N 57 PRD_000911 C22 H31 SING N N 58 PRD_000911 C22 H32 SING N N 59 PRD_000911 O6 C27 DOUB N N 60 PRD_000911 N6 C27 SING N N 61 PRD_000911 C27 C26 SING N N 62 PRD_000911 C26 C25 SING N N 63 PRD_000911 C25 C24 SING N N 64 PRD_000911 C24 N5 SING N N 65 PRD_000911 C24 C23 SING N N 66 PRD_000911 C23 N4 DOUB N N 67 PRD_000911 C23 H33 SING N N 68 PRD_000911 N4 H34 SING N N 69 PRD_000911 C24 H35 SING N N 70 PRD_000911 N5 H36 SING N N 71 PRD_000911 C25 H37 SING N N 72 PRD_000911 C25 H38 SING N N 73 PRD_000911 C26 H39 SING N N 74 PRD_000911 C26 H40 SING N N 75 PRD_000911 N6 H41 SING N N 76 PRD_000911 N6 H42 SING N N 77 PRD_000911 C1 N1 SING N N 78 PRD_000911 C10 N2 SING N N 79 PRD_000911 C13 N3 SING N N 80 PRD_000911 C18 N5 SING N N 81 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_000911 SMILES ACDLabs 12.01 "O=C(N)CCC(C=[N@H])NC(=O)C(NC(=O)C(NC(=O)C(NC(=O)OCc1ccccc1)C)C(C)C)CC(C)C" PRD_000911 InChI InChI 1.03 "InChI=1S/C27H42N6O6/c1-16(2)13-21(25(36)31-20(14-28)11-12-22(29)34)32-26(37)23(17(3)4)33-24(35)18(5)30-27(38)39-15-19-9-7-6-8-10-19/h6-10,14,16-18,20-21,23,28H,11-13,15H2,1-5H3,(H2,29,34)(H,30,38)(H,31,36)(H,32,37)(H,33,35)/b28-14+/t18-,20+,21-,23+/m0/s1" PRD_000911 InChIKey InChI 1.03 KWWXATSZVNLQDH-MYNUAGLYSA-N PRD_000911 SMILES_CANONICAL CACTVS 3.370 "CC(C)C[C@H](NC(=O)[C@@H](NC(=O)[C@H](C)NC(=O)OCc1ccccc1)C(C)C)C(=O)N[C@@H](CCC(N)=O)C=N" PRD_000911 SMILES CACTVS 3.370 "CC(C)C[CH](NC(=O)[CH](NC(=O)[CH](C)NC(=O)OCc1ccccc1)C(C)C)C(=O)N[CH](CCC(N)=O)C=N" PRD_000911 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@H](C(=O)N[C@@H](C(C)C)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCC(=O)N)C=N)NC(=O)OCc1ccccc1" PRD_000911 SMILES "OpenEye OEToolkits" 1.7.6 "CC(C)CC(C(=O)NC(CCC(=O)N)C=N)NC(=O)C(C(C)C)NC(=O)C(C)NC(=O)OCc1ccccc1" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD_000911 "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(benzyloxy)carbonyl]-L-alanyl-L-valyl-N-[(2R)-5-amino-1-imino-5-oxopentan-2-yl]-L-leucinamide" PRD_000911 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(phenylmethyl) N-[(2S)-1-[[(2S)-1-[[(2S)-1-[[(2S)-5-azanyl-1-azanylidene-5-oxidanylidene-pentan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]amino]-3-methyl-1-oxidanylidene-butan-2-yl]amino]-1-oxidanylidene-propan-2-yl]carbamate" #