data_PRDCC_001054 # _chem_comp.id PRD_001054 _chem_comp.name "peptide inhibitor, syc59" _chem_comp.formula "C24 H38 N4 O6" _chem_comp.formula_weight 478.582 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_001054 C1 C1 C 0 1 N N N 12.407 17.514 38.159 4.503 -0.536 0.928 PHQ 1 C1 polymer 1 1 1 ? ? ? PRD_001054 O1 O1 O 0 1 N N N 12.309 17.604 39.385 4.690 -1.553 1.565 PHQ 1 O1 polymer 1 1 2 ? ? ? PRD_001054 O2 O2 O 0 1 N N N 11.558 16.698 37.479 5.551 0.159 0.446 PHQ 1 O2 polymer 1 1 3 ? ? ? PRD_001054 C2 C2 C 0 1 N N N 10.395 16.244 38.188 6.875 -0.366 0.727 PHQ 1 C2 polymer 1 1 4 ? ? ? PRD_001054 C3 C3 C 0 1 Y N N 9.248 16.734 37.540 7.915 0.536 0.114 PHQ 1 C3 polymer 1 1 5 ? ? ? PRD_001054 C4 C4 C 0 1 Y N N 8.167 17.332 38.184 8.431 1.591 0.844 PHQ 1 C4 polymer 1 1 6 ? ? ? PRD_001054 C5 C5 C 0 1 Y N N 7.089 17.797 37.427 9.384 2.419 0.281 PHQ 1 C5 polymer 1 1 7 ? ? ? PRD_001054 C6 C6 C 0 1 Y N N 7.086 17.677 36.037 9.821 2.192 -1.010 PHQ 1 C6 polymer 1 1 8 ? ? ? PRD_001054 C7 C7 C 0 1 Y N N 8.171 17.091 35.401 9.306 1.137 -1.740 PHQ 1 C7 polymer 1 1 9 ? ? ? PRD_001054 C8 C8 C 0 1 Y N N 9.240 16.631 36.155 8.356 0.306 -1.176 PHQ 1 C8 polymer 1 1 10 ? ? ? PRD_001054 N1 N1 N 0 1 N N N 13.471 17.944 37.477 3.247 -0.105 0.698 ALA 2 N polymer 1 1 11 ? ? ? PRD_001054 C9 C9 C 0 1 N N S 14.486 18.827 38.051 2.106 -0.864 1.217 ALA 2 CA polymer 1 1 12 ? ? ? PRD_001054 C10 C10 C 0 1 N N N 14.420 20.193 37.329 0.891 -0.586 0.370 ALA 2 C polymer 1 1 13 ? ? ? PRD_001054 O3 O3 O 0 1 N N N 14.142 20.238 36.128 0.970 0.172 -0.573 ALA 2 O polymer 1 1 14 ? ? ? PRD_001054 C11 C11 C 0 1 N N N 15.840 18.169 37.796 1.829 -0.445 2.661 ALA 2 CB polymer 1 1 15 ? ? ? PRD_001054 N2 N2 N 0 1 N N N 14.627 21.290 38.071 -0.284 -1.179 0.662 LEU 3 N polymer 1 1 16 ? ? ? PRD_001054 C12 C12 C 0 1 N N S 14.572 22.609 37.411 -1.465 -0.908 -0.161 LEU 3 CA polymer 1 1 17 ? ? ? PRD_001054 C13 C13 C 0 1 N N N 15.729 22.636 36.385 -2.710 -1.147 0.655 LEU 3 C polymer 1 1 18 ? ? ? PRD_001054 O4 O4 O 0 1 N N N 16.803 22.083 36.617 -2.620 -1.507 1.809 LEU 3 O polymer 1 1 19 ? ? ? PRD_001054 C14 C14 C 0 1 N N N 14.733 23.927 38.229 -1.465 -1.838 -1.375 LEU 3 CB polymer 1 1 20 ? ? ? PRD_001054 C15 C15 C 0 1 N N N 13.648 24.315 39.301 -0.267 -1.510 -2.268 LEU 3 CG polymer 1 1 21 ? ? ? PRD_001054 C16 C16 C 0 1 N N N 12.184 24.174 38.791 -0.195 -2.519 -3.416 LEU 3 CD1 polymer 1 1 22 ? ? ? PRD_001054 C17 C17 C 0 1 N N N 13.913 24.254 40.840 -0.426 -0.100 -2.839 LEU 3 CD2 polymer 1 1 23 ? ? ? PRD_001054 C18 C18 C 0 1 N N N 17.191 24.728 33.921 -5.502 -2.675 0.840 1HB 4 C polymer 1 1 24 ? ? ? PRD_001054 C19 C19 C 0 1 N N N 16.196 20.122 32.107 -7.105 1.946 -0.075 1HB 4 CD polymer 1 1 25 ? ? ? PRD_001054 C20 C20 C 0 1 N N N 16.274 21.006 33.335 -5.972 1.128 0.488 1HB 4 CG polymer 1 1 26 ? ? ? PRD_001054 N3 N3 N 0 1 N N N 15.483 23.285 35.229 -3.925 -0.959 0.101 1HB 4 N polymer 1 1 27 ? ? ? PRD_001054 O5 O5 O 0 1 N N N 15.822 20.568 31.022 -8.069 1.394 -0.561 1HB 4 OE1 polymer 1 1 28 ? ? ? PRD_001054 N4 N4 N 0 1 N N N 16.651 18.879 32.288 -7.048 3.292 -0.038 1HB 4 NE2 polymer 1 1 29 ? ? ? PRD_001054 C21 C21 C 0 1 N N N 17.064 18.459 33.647 -8.150 4.088 -0.585 1HB 4 CH1 polymer 1 1 30 ? ? ? PRD_001054 C22 C22 C 0 1 N N N 16.628 17.918 31.161 -5.884 3.960 0.550 1HB 4 CH2 polymer 1 1 31 ? ? ? PRD_001054 C23 C23 C 0 1 N N S 16.581 23.331 34.216 -5.135 -1.191 0.893 1HB 4 CA polymer 1 1 32 ? ? ? PRD_001054 C24 C24 C 0 1 N N N 16.335 22.504 32.931 -6.286 -0.360 0.322 1HB 4 CB polymer 1 1 33 ? ? ? PRD_001054 O6 O6 O 0 1 N N N 17.378 25.563 34.826 -5.853 -3.032 -0.498 1HB 4 O polymer 1 1 34 ? ? ? PRD_001054 H1 H1 H 0 1 N N N 10.373 15.144 38.196 7.026 -0.414 1.806 PHQ 1 H21 polymer 1 1 35 ? ? ? PRD_001054 H2 H2 H 0 1 N N N 10.423 16.618 39.222 6.967 -1.367 0.303 PHQ 1 H22 polymer 1 1 36 ? ? ? PRD_001054 H3 H3 H 0 1 N N N 8.162 17.435 39.259 8.090 1.768 1.853 PHQ 1 H41 polymer 1 1 37 ? ? ? PRD_001054 H4 H4 H 0 1 N N N 6.247 18.255 37.924 9.787 3.243 0.851 PHQ 1 H51 polymer 1 1 38 ? ? ? PRD_001054 H5 H5 H 0 1 N N N 6.246 18.037 35.461 10.566 2.840 -1.450 PHQ 1 H61 polymer 1 1 39 ? ? ? PRD_001054 H6 H6 H 0 1 N N N 8.183 16.994 34.325 9.647 0.960 -2.749 PHQ 1 H71 polymer 1 1 40 ? ? ? PRD_001054 H7 H7 H 0 1 N N N 10.085 16.183 35.654 7.955 -0.520 -1.744 PHQ 1 H81 polymer 1 1 41 ? ? ? PRD_001054 H8 H8 H 0 1 N N N 13.579 17.648 36.528 3.098 0.707 0.189 ALA 2 H polymer 1 1 42 ? ? ? PRD_001054 H9 H9 H 0 1 N N N 14.328 18.965 39.131 2.334 -1.930 1.185 ALA 2 HA polymer 1 1 43 ? ? ? PRD_001054 H10 H10 H 0 1 N N N 16.639 18.800 38.212 2.708 -0.646 3.273 ALA 2 HB1 polymer 1 1 44 ? ? ? PRD_001054 H11 H11 H 0 1 N N N 15.864 17.181 38.279 1.601 0.621 2.693 ALA 2 HB2 polymer 1 1 45 ? ? ? PRD_001054 H12 H12 H 0 1 N N N 15.992 18.052 36.713 0.980 -1.009 3.047 ALA 2 HB3 polymer 1 1 46 ? ? ? PRD_001054 H13 H13 H 0 1 N N N 14.815 21.216 39.050 -0.347 -1.785 1.417 LEU 3 H polymer 1 1 47 ? ? ? PRD_001054 H14 H14 H 0 1 N N N 13.628 22.681 36.851 -1.444 0.129 -0.496 LEU 3 HA polymer 1 1 48 ? ? ? PRD_001054 H15 H15 H 0 1 N N N 15.695 23.859 38.758 -1.397 -2.873 -1.041 LEU 3 HB2 polymer 1 1 49 ? ? ? PRD_001054 H16 H16 H 0 1 N N N 14.772 24.751 37.502 -2.387 -1.699 -1.940 LEU 3 HB3 polymer 1 1 50 ? ? ? PRD_001054 H17 H17 H 0 1 N N N 13.729 25.406 39.190 0.650 -1.563 -1.680 LEU 3 HG polymer 1 1 51 ? ? ? PRD_001054 H18 H18 H 0 0 N N N 11.487 24.461 39.592 -1.111 -2.467 -4.004 LEU 3 HD11 polymer 1 1 52 ? ? ? PRD_001054 H19 H19 H 0 0 N N N 12.034 24.831 37.921 0.659 -2.286 -4.052 LEU 3 HD12 polymer 1 1 53 ? ? ? PRD_001054 H20 H20 H 0 0 N N N 11.997 23.130 38.499 -0.081 -3.524 -3.010 LEU 3 HD13 polymer 1 1 54 ? ? ? PRD_001054 H21 H21 H 0 0 N N N 13.009 24.571 41.381 -1.342 -0.047 -3.427 LEU 3 HD21 polymer 1 1 55 ? ? ? PRD_001054 H22 H22 H 0 0 N N N 14.170 23.224 41.127 -0.477 0.619 -2.021 LEU 3 HD22 polymer 1 1 56 ? ? ? PRD_001054 H23 H23 H 0 0 N N N 14.747 24.925 41.095 0.428 0.134 -3.474 LEU 3 HD23 polymer 1 1 57 ? ? ? PRD_001054 H24 H24 H 0 1 N N N 15.384 20.836 33.959 -5.051 1.367 -0.045 1HB 4 H1 polymer 1 1 58 ? ? ? PRD_001054 H25 H25 H 0 1 N N N 17.178 20.750 33.908 -5.849 1.357 1.546 1HB 4 H3 polymer 1 1 59 ? ? ? PRD_001054 H26 H26 H 0 1 N N N 14.599 23.719 35.056 -3.997 -0.670 -0.823 1HB 4 H2 polymer 1 1 60 ? ? ? PRD_001054 H27 H27 H 0 1 N N N 17.010 19.320 34.330 -8.883 4.280 0.198 1HB 4 H6 polymer 1 1 61 ? ? ? PRD_001054 H28 H28 H 0 1 N N N 16.393 17.665 34.005 -7.763 5.035 -0.960 1HB 4 H7 polymer 1 1 62 ? ? ? PRD_001054 H29 H29 H 0 1 N N N 18.096 18.080 33.616 -8.623 3.541 -1.400 1HB 4 H8 polymer 1 1 63 ? ? ? PRD_001054 H30 H30 H 0 1 N N N 17.038 16.953 31.493 -5.174 3.211 0.901 1HB 4 H9 polymer 1 1 64 ? ? ? PRD_001054 H31 H31 H 0 1 N N N 15.592 17.778 30.820 -5.407 4.588 -0.203 1HB 4 H10 polymer 1 1 65 ? ? ? PRD_001054 H32 H32 H 0 1 N N N 17.237 18.310 30.333 -6.204 4.578 1.389 1HB 4 H11 polymer 1 1 66 ? ? ? PRD_001054 H33 H33 H 0 1 N N N 17.408 22.795 34.705 -4.954 -0.898 1.927 1HB 4 HA polymer 1 1 67 ? ? ? PRD_001054 H34 H34 H 0 1 N N N 17.157 22.666 32.218 -7.206 -0.599 0.854 1HB 4 H13 polymer 1 1 68 ? ? ? PRD_001054 H35 H35 H 0 1 N N N 15.384 22.806 32.468 -6.409 -0.589 -0.737 1HB 4 H14 polymer 1 1 69 ? ? ? PRD_001054 H36 H36 H 0 1 N N N 17.756 26.352 34.456 -6.097 -3.961 -0.607 1HB 4 H15 polymer 1 1 70 ? ? ? PRD_001054 H37 H37 H 0 1 N N N 18.173 24.546 33.460 -4.650 -3.272 1.164 1HB 4 H16 polymer 1 1 71 ? ? ? PRD_001054 H38 H38 H 0 1 N N N 16.525 25.208 33.189 -6.349 -2.864 1.500 1HB 4 H17 polymer 1 1 72 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_001054 C1 O1 DOUB N N 1 PRD_001054 C1 O2 SING N N 2 PRD_001054 O2 C2 SING N N 3 PRD_001054 C2 C3 SING N N 4 PRD_001054 C2 H1 SING N N 5 PRD_001054 C2 H2 SING N N 6 PRD_001054 C3 C4 DOUB Y N 7 PRD_001054 C3 C8 SING Y N 8 PRD_001054 C4 C5 SING Y N 9 PRD_001054 C4 H3 SING N N 10 PRD_001054 C5 C6 DOUB Y N 11 PRD_001054 C5 H4 SING N N 12 PRD_001054 C6 C7 SING Y N 13 PRD_001054 C6 H5 SING N N 14 PRD_001054 C7 C8 DOUB Y N 15 PRD_001054 C7 H6 SING N N 16 PRD_001054 C8 H7 SING N N 17 PRD_001054 N1 C9 SING N N 18 PRD_001054 N1 H8 SING N N 19 PRD_001054 C9 C10 SING N N 20 PRD_001054 C9 C11 SING N N 21 PRD_001054 C9 H9 SING N N 22 PRD_001054 C10 O3 DOUB N N 23 PRD_001054 C11 H10 SING N N 24 PRD_001054 C11 H11 SING N N 25 PRD_001054 C11 H12 SING N N 26 PRD_001054 N2 C12 SING N N 27 PRD_001054 N2 H13 SING N N 28 PRD_001054 C12 C13 SING N N 29 PRD_001054 C12 C14 SING N N 30 PRD_001054 C12 H14 SING N N 31 PRD_001054 C13 O4 DOUB N N 32 PRD_001054 C14 C15 SING N N 33 PRD_001054 C14 H15 SING N N 34 PRD_001054 C14 H16 SING N N 35 PRD_001054 C15 C16 SING N N 36 PRD_001054 C15 C17 SING N N 37 PRD_001054 C15 H17 SING N N 38 PRD_001054 C16 H18 SING N N 39 PRD_001054 C16 H19 SING N N 40 PRD_001054 C16 H20 SING N N 41 PRD_001054 C17 H21 SING N N 42 PRD_001054 C17 H22 SING N N 43 PRD_001054 C17 H23 SING N N 44 PRD_001054 O5 C19 DOUB N N 45 PRD_001054 C22 N4 SING N N 46 PRD_001054 C19 N4 SING N N 47 PRD_001054 C19 C20 SING N N 48 PRD_001054 N4 C21 SING N N 49 PRD_001054 C24 C20 SING N N 50 PRD_001054 C24 C23 SING N N 51 PRD_001054 C18 C23 SING N N 52 PRD_001054 C18 O6 SING N N 53 PRD_001054 C23 N3 SING N N 54 PRD_001054 C20 H24 SING N N 55 PRD_001054 C20 H25 SING N N 56 PRD_001054 N3 H26 SING N N 57 PRD_001054 C21 H27 SING N N 58 PRD_001054 C21 H28 SING N N 59 PRD_001054 C21 H29 SING N N 60 PRD_001054 C22 H30 SING N N 61 PRD_001054 C22 H31 SING N N 62 PRD_001054 C22 H32 SING N N 63 PRD_001054 C23 H33 SING N N 64 PRD_001054 C24 H34 SING N N 65 PRD_001054 C24 H35 SING N N 66 PRD_001054 O6 H36 SING N N 67 PRD_001054 C18 H37 SING N N 68 PRD_001054 C18 H38 SING N N 69 PRD_001054 C1 N1 SING N N 70 PRD_001054 C10 N2 SING N N 71 PRD_001054 C13 N3 SING N N 72 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_001054 SMILES ACDLabs 12.01 "O=C(N(C)C)CCC(NC(=O)C(NC(=O)C(NC(=O)OCc1ccccc1)C)CC(C)C)CO" PRD_001054 InChI InChI 1.03 "InChI=1S/C24H38N4O6/c1-16(2)13-20(23(32)26-19(14-29)11-12-21(30)28(4)5)27-22(31)17(3)25-24(33)34-15-18-9-7-6-8-10-18/h6-10,16-17,19-20,29H,11-15H2,1-5H3,(H,25,33)(H,26,32)(H,27,31)/t17-,19-,20+/m1/s1" PRD_001054 InChIKey InChI 1.03 UCCJLTDLMDACDO-RLLQIKCJSA-N PRD_001054 SMILES_CANONICAL CACTVS 3.370 "CC(C)C[C@H](NC(=O)[C@H](C)NC(=O)OCc1ccccc1)C(=O)N[C@H](CO)CCC(=O)N(C)C" PRD_001054 SMILES CACTVS 3.370 "CC(C)C[CH](NC(=O)[CH](C)NC(=O)OCc1ccccc1)C(=O)N[CH](CO)CCC(=O)N(C)C" PRD_001054 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@H](C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCC(=O)N(C)C)CO)NC(=O)OCc1ccccc1" PRD_001054 SMILES "OpenEye OEToolkits" 1.7.6 "CC(C)CC(C(=O)NC(CCC(=O)N(C)C)CO)NC(=O)C(C)NC(=O)OCc1ccccc1" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD_001054 "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(benzyloxy)carbonyl]-L-alanyl-N-[(2R)-5-(dimethylamino)-1-hydroxy-5-oxopentan-2-yl]-L-leucinamide" PRD_001054 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(phenylmethyl) N-[(2S)-1-[[(2S)-1-[[(2S)-5-(dimethylamino)-1-oxidanyl-5-oxidanylidene-pentan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]amino]-1-oxidanylidene-propan-2-yl]carbamate" #