data_PRDCC_001061 # _chem_comp.id PRD_001061 _chem_comp.name "peptide inhibitor, syc 10" _chem_comp.formula "C30 H42 N4 O6" _chem_comp.formula_weight 554.678 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_001061 C1 C1 C 0 1 N N N 35.272 38.457 18.052 4.160 -0.806 -0.042 PHQ 1 C1 polymer 1 1 1 ? ? ? PRD_001061 O1 O1 O 0 1 N N N 35.689 39.572 18.283 4.376 -1.743 -0.785 PHQ 1 O1 polymer 1 1 2 ? ? ? PRD_001061 O2 O2 O 0 1 N N N 34.107 38.075 18.475 5.187 -0.095 0.461 PHQ 1 O2 polymer 1 1 3 ? ? ? PRD_001061 C2 C2 C 0 1 N N N 33.208 39.080 18.282 6.524 -0.506 0.073 PHQ 1 C2 polymer 1 1 4 ? ? ? PRD_001061 C3 C3 C 0 1 Y N N 31.853 38.813 18.284 7.536 0.399 0.728 PHQ 1 C3 polymer 1 1 5 ? ? ? PRD_001061 C4 C4 C 0 1 Y N N 31.379 37.680 17.721 8.048 0.078 1.972 PHQ 1 C4 polymer 1 1 6 ? ? ? PRD_001061 C5 C5 C 0 1 Y N N 30.066 37.383 17.689 8.977 0.907 2.572 PHQ 1 C5 polymer 1 1 7 ? ? ? PRD_001061 C6 C6 C 0 1 Y N N 29.173 38.274 18.186 9.394 2.058 1.929 PHQ 1 C6 polymer 1 1 8 ? ? ? PRD_001061 C7 C7 C 0 1 Y N N 29.635 39.412 18.761 8.882 2.378 0.686 PHQ 1 C7 polymer 1 1 9 ? ? ? PRD_001061 C8 C8 C 0 1 Y N N 30.952 39.703 18.803 7.957 1.547 0.083 PHQ 1 C8 polymer 1 1 10 ? ? ? PRD_001061 N1 N1 N 0 1 N N N 35.942 37.569 17.413 2.892 -0.475 0.273 LEU 2 N polymer 1 1 11 ? ? ? PRD_001061 C9 C9 C 0 1 N N S 37.239 37.864 16.908 1.774 -1.244 -0.279 LEU 2 CA polymer 1 1 12 ? ? ? PRD_001061 C10 C10 C 0 1 N N N 37.177 37.595 15.410 0.539 -0.382 -0.312 LEU 2 C polymer 1 1 13 ? ? ? PRD_001061 O3 O3 O 0 1 N N N 36.570 36.627 14.975 0.587 0.763 0.086 LEU 2 O polymer 1 1 14 ? ? ? PRD_001061 C11 C11 C 0 1 N N N 38.268 36.935 17.498 1.517 -2.470 0.599 LEU 2 CB polymer 1 1 15 ? ? ? PRD_001061 C12 C12 C 0 1 N N N 38.296 36.935 19.016 2.725 -3.407 0.534 LEU 2 CG polymer 1 1 16 ? ? ? PRD_001061 C13 C13 C 0 1 N N N 38.938 35.654 19.452 2.521 -4.571 1.506 LEU 2 CD1 polymer 1 1 17 ? ? ? PRD_001061 C14 C14 C 0 1 N N N 39.103 38.110 19.443 2.872 -3.951 -0.889 LEU 2 CD2 polymer 1 1 18 ? ? ? PRD_001061 N2 N2 N 0 1 N N N 37.811 38.502 14.695 -0.620 -0.883 -0.785 PHE 3 N polymer 1 1 19 ? ? ? PRD_001061 C15 C15 C 0 1 N N S 37.876 38.413 13.230 -1.821 -0.045 -0.817 PHE 3 CA polymer 1 1 20 ? ? ? PRD_001061 C16 C16 C 0 1 N N N 38.557 37.099 12.883 -3.046 -0.921 -0.781 PHE 3 C polymer 1 1 21 ? ? ? PRD_001061 O4 O4 O 0 1 N N N 39.538 36.736 13.489 -2.928 -2.127 -0.732 PHE 3 O polymer 1 1 22 ? ? ? PRD_001061 C17 C17 C 0 1 N N N 38.646 39.593 12.621 -1.827 0.788 -2.101 PHE 3 CB polymer 1 1 23 ? ? ? PRD_001061 C18 C18 C 0 1 Y N N 37.789 40.893 12.581 -0.669 1.751 -2.081 PHE 3 CG polymer 1 1 24 ? ? ? PRD_001061 C19 C19 C 0 1 Y N N 38.124 42.032 13.320 0.553 1.375 -2.606 PHE 3 CD1 polymer 1 1 25 ? ? ? PRD_001061 C20 C20 C 0 1 Y N N 36.652 40.967 11.819 -0.830 3.014 -1.542 PHE 3 CD2 polymer 1 1 26 ? ? ? PRD_001061 C21 C21 C 0 1 Y N N 37.322 43.168 13.287 1.616 2.259 -2.587 PHE 3 CE1 polymer 1 1 27 ? ? ? PRD_001061 C22 C22 C 0 1 Y N N 35.874 42.097 11.773 0.232 3.898 -1.524 PHE 3 CE2 polymer 1 1 28 ? ? ? PRD_001061 C23 C23 C 0 1 Y N N 36.207 43.227 12.513 1.456 3.520 -2.044 PHE 3 CZ polymer 1 1 29 ? ? ? PRD_001061 C24 C24 C 0 1 N N N 39.116 35.208 10.055 -5.808 -1.674 -2.186 1HB 4 C polymer 1 1 30 ? ? ? PRD_001061 C25 C25 C 0 1 N N N 37.036 32.478 13.815 -7.506 0.701 1.844 1HB 4 CD polymer 1 1 31 ? ? ? PRD_001061 C26 C26 C 0 1 N N N 37.544 33.850 13.352 -6.349 -0.077 1.273 1HB 4 CG polymer 1 1 32 ? ? ? PRD_001061 N3 N3 N 0 1 N N N 38.026 36.439 11.876 -4.274 -0.365 -0.802 1HB 4 N polymer 1 1 33 ? ? ? PRD_001061 O5 O5 O 0 1 N N N 36.372 31.793 13.087 -8.469 0.951 1.151 1HB 4 OE1 polymer 1 1 34 ? ? ? PRD_001061 N4 N4 N 0 1 N N N 37.330 32.110 15.051 -7.471 1.119 3.125 1HB 4 NE2 polymer 1 1 35 ? ? ? PRD_001061 C27 C27 C 0 1 N N N 38.060 32.991 15.955 -8.597 1.875 3.680 1HB 4 CH1 polymer 1 1 36 ? ? ? PRD_001061 C28 C28 C 0 1 N N N 36.858 30.829 15.477 -6.308 0.816 3.962 1HB 4 CH2 polymer 1 1 37 ? ? ? PRD_001061 C29 C29 C 0 1 N N S 38.588 35.167 11.513 -5.465 -1.217 -0.767 1HB 4 CA polymer 1 1 38 ? ? ? PRD_001061 C30 C30 C 0 1 N N N 37.557 34.079 11.867 -6.640 -0.427 -0.187 1HB 4 CB polymer 1 1 39 ? ? ? PRD_001061 O6 O6 O 0 1 N N N 39.913 36.015 9.604 -6.177 -0.541 -2.975 1HB 4 O polymer 1 1 40 ? ? ? PRD_001061 H1 H1 H 0 1 N N N 33.386 39.820 19.077 6.696 -1.534 0.392 PHQ 1 H21 polymer 1 1 41 ? ? ? PRD_001061 H2 H2 H 0 1 N N N 33.440 39.529 17.305 6.625 -0.439 -1.010 PHQ 1 H22 polymer 1 1 42 ? ? ? PRD_001061 H3 H3 H 0 1 N N N 32.080 36.986 17.280 7.722 -0.821 2.474 PHQ 1 H41 polymer 1 1 43 ? ? ? PRD_001061 H4 H4 H 0 1 N N N 29.728 36.446 17.272 9.376 0.657 3.544 PHQ 1 H51 polymer 1 1 44 ? ? ? PRD_001061 H5 H5 H 0 1 N N N 28.112 38.081 18.125 10.118 2.706 2.399 PHQ 1 H61 polymer 1 1 45 ? ? ? PRD_001061 H6 H6 H 0 1 N N N 28.930 40.104 19.197 9.208 3.278 0.184 PHQ 1 H71 polymer 1 1 46 ? ? ? PRD_001061 H7 H7 H 0 1 N N N 31.292 40.629 19.242 7.561 1.795 -0.890 PHQ 1 H81 polymer 1 1 47 ? ? ? PRD_001061 H8 H8 H 0 1 N N N 35.549 36.661 17.268 2.720 0.274 0.866 LEU 2 H polymer 1 1 48 ? ? ? PRD_001061 H9 H9 H 0 1 N N N 37.518 38.912 17.094 2.020 -1.567 -1.290 LEU 2 HA polymer 1 1 49 ? ? ? PRD_001061 H10 H10 H 0 1 N N N 38.049 35.913 17.155 1.359 -2.153 1.630 LEU 2 HB2 polymer 1 1 50 ? ? ? PRD_001061 H11 H11 H 0 1 N N N 39.260 37.240 17.133 0.631 -2.994 0.240 LEU 2 HB3 polymer 1 1 51 ? ? ? PRD_001061 H12 H12 H 0 1 N N N 37.273 37.005 19.413 3.625 -2.858 0.808 LEU 2 HG polymer 1 1 52 ? ? ? PRD_001061 H13 H13 H 0 0 N N N 38.976 35.618 20.551 1.620 -5.120 1.232 LEU 2 HD11 polymer 1 1 53 ? ? ? PRD_001061 H14 H14 H 0 0 N N N 38.350 34.803 19.077 3.382 -5.238 1.460 LEU 2 HD12 polymer 1 1 54 ? ? ? PRD_001061 H15 H15 H 0 0 N N N 39.960 35.600 19.048 2.416 -4.183 2.520 LEU 2 HD13 polymer 1 1 55 ? ? ? PRD_001061 H16 H16 H 0 0 N N N 39.147 38.145 20.542 1.971 -4.501 -1.163 LEU 2 HD21 polymer 1 1 56 ? ? ? PRD_001061 H17 H17 H 0 0 N N N 40.122 38.022 19.038 3.017 -3.122 -1.581 LEU 2 HD22 polymer 1 1 57 ? ? ? PRD_001061 H18 H18 H 0 0 N N N 38.637 39.032 19.065 3.732 -4.619 -0.935 LEU 2 HD23 polymer 1 1 58 ? ? ? PRD_001061 H19 H19 H 0 1 N N N 38.257 39.267 15.159 -0.658 -1.798 -1.103 PHE 3 H polymer 1 1 59 ? ? ? PRD_001061 H20 H20 H 0 1 N N N 36.857 38.406 12.816 -1.824 0.620 0.047 PHE 3 HA polymer 1 1 60 ? ? ? PRD_001061 H21 H21 H 0 1 N N N 39.546 39.780 13.226 -1.735 0.127 -2.963 PHE 3 HB2 polymer 1 1 61 ? ? ? PRD_001061 H22 H22 H 0 1 N N N 38.942 39.331 11.594 -2.762 1.344 -2.169 PHE 3 HB3 polymer 1 1 62 ? ? ? PRD_001061 H23 H23 H 0 1 N N N 39.019 42.030 13.925 0.678 0.389 -3.030 PHE 3 HD1 polymer 1 1 63 ? ? ? PRD_001061 H24 H24 H 0 1 N N N 36.358 40.107 11.235 -1.786 3.310 -1.137 PHE 3 HD2 polymer 1 1 64 ? ? ? PRD_001061 H25 H25 H 0 1 N N N 37.592 44.022 13.890 2.571 1.964 -2.996 PHE 3 HE1 polymer 1 1 65 ? ? ? PRD_001061 H26 H26 H 0 1 N N N 34.990 42.109 11.153 0.106 4.885 -1.103 PHE 3 HE2 polymer 1 1 66 ? ? ? PRD_001061 H27 H27 H 0 1 N N N 35.600 44.120 12.474 2.286 4.210 -2.029 PHE 3 HZ polymer 1 1 67 ? ? ? PRD_001061 H28 H28 H 0 1 N N N 36.900 34.618 13.806 -5.443 0.526 1.329 1HB 4 H1 polymer 1 1 68 ? ? ? PRD_001061 H29 H29 H 0 1 N N N 38.574 33.970 13.720 -6.210 -0.994 1.846 1HB 4 H3 polymer 1 1 69 ? ? ? PRD_001061 H30 H30 H 0 1 N N N 37.247 36.815 11.374 -4.368 0.600 -0.841 1HB 4 H2 polymer 1 1 70 ? ? ? PRD_001061 H31 H31 H 0 1 N N N 38.328 33.918 15.427 -9.319 1.185 4.116 1HB 4 H6 polymer 1 1 71 ? ? ? PRD_001061 H32 H32 H 0 1 N N N 37.428 33.232 16.822 -8.233 2.555 4.450 1HB 4 H7 polymer 1 1 72 ? ? ? PRD_001061 H33 H33 H 0 1 N N N 38.976 32.487 16.298 -9.075 2.449 2.886 1HB 4 H8 polymer 1 1 73 ? ? ? PRD_001061 H34 H34 H 0 1 N N N 37.170 30.650 16.516 -5.576 1.619 3.872 1HB 4 H9 polymer 1 1 74 ? ? ? PRD_001061 H35 H35 H 0 1 N N N 35.760 30.803 15.414 -6.622 0.727 5.002 1HB 4 H10 polymer 1 1 75 ? ? ? PRD_001061 H36 H36 H 0 1 N N N 37.281 30.048 14.828 -5.860 -0.122 3.636 1HB 4 H11 polymer 1 1 76 ? ? ? PRD_001061 H37 H37 H 0 1 N N N 39.463 34.991 12.156 -5.270 -2.089 -0.142 1HB 4 HA polymer 1 1 77 ? ? ? PRD_001061 H38 H38 H 0 1 N N N 37.825 33.143 11.356 -7.546 -1.030 -0.243 1HB 4 H13 polymer 1 1 78 ? ? ? PRD_001061 H39 H39 H 0 1 N N N 36.558 34.403 11.539 -6.779 0.490 -0.760 1HB 4 H14 polymer 1 1 79 ? ? ? PRD_001061 H40 H40 H 0 1 N N N 40.073 35.825 8.687 -6.407 -0.756 -3.889 1HB 4 H15 polymer 1 1 80 ? ? ? PRD_001061 H41 H41 H 0 1 N N N 39.576 34.223 9.887 -4.939 -2.159 -2.631 1HB 4 H16 polymer 1 1 81 ? ? ? PRD_001061 H42 H42 H 0 1 N N N 38.219 35.306 9.426 -6.639 -2.378 -2.151 1HB 4 H17 polymer 1 1 82 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_001061 C1 O1 DOUB N N 1 PRD_001061 C1 O2 SING N N 2 PRD_001061 O2 C2 SING N N 3 PRD_001061 C2 C3 SING N N 4 PRD_001061 C2 H1 SING N N 5 PRD_001061 C2 H2 SING N N 6 PRD_001061 C3 C4 DOUB Y N 7 PRD_001061 C3 C8 SING Y N 8 PRD_001061 C4 C5 SING Y N 9 PRD_001061 C4 H3 SING N N 10 PRD_001061 C5 C6 DOUB Y N 11 PRD_001061 C5 H4 SING N N 12 PRD_001061 C6 C7 SING Y N 13 PRD_001061 C6 H5 SING N N 14 PRD_001061 C7 C8 DOUB Y N 15 PRD_001061 C7 H6 SING N N 16 PRD_001061 C8 H7 SING N N 17 PRD_001061 N1 C9 SING N N 18 PRD_001061 N1 H8 SING N N 19 PRD_001061 C9 C10 SING N N 20 PRD_001061 C9 C11 SING N N 21 PRD_001061 C9 H9 SING N N 22 PRD_001061 C10 O3 DOUB N N 23 PRD_001061 C11 C12 SING N N 24 PRD_001061 C11 H10 SING N N 25 PRD_001061 C11 H11 SING N N 26 PRD_001061 C12 C13 SING N N 27 PRD_001061 C12 C14 SING N N 28 PRD_001061 C12 H12 SING N N 29 PRD_001061 C13 H13 SING N N 30 PRD_001061 C13 H14 SING N N 31 PRD_001061 C13 H15 SING N N 32 PRD_001061 C14 H16 SING N N 33 PRD_001061 C14 H17 SING N N 34 PRD_001061 C14 H18 SING N N 35 PRD_001061 N2 C15 SING N N 36 PRD_001061 N2 H19 SING N N 37 PRD_001061 C15 C16 SING N N 38 PRD_001061 C15 C17 SING N N 39 PRD_001061 C15 H20 SING N N 40 PRD_001061 C16 O4 DOUB N N 41 PRD_001061 C17 C18 SING N N 42 PRD_001061 C17 H21 SING N N 43 PRD_001061 C17 H22 SING N N 44 PRD_001061 C18 C19 DOUB Y N 45 PRD_001061 C18 C20 SING Y N 46 PRD_001061 C19 C21 SING Y N 47 PRD_001061 C19 H23 SING N N 48 PRD_001061 C20 C22 DOUB Y N 49 PRD_001061 C20 H24 SING N N 50 PRD_001061 C21 C23 DOUB Y N 51 PRD_001061 C21 H25 SING N N 52 PRD_001061 C22 C23 SING Y N 53 PRD_001061 C22 H26 SING N N 54 PRD_001061 C23 H27 SING N N 55 PRD_001061 O5 C25 DOUB N N 56 PRD_001061 C28 N4 SING N N 57 PRD_001061 C25 N4 SING N N 58 PRD_001061 C25 C26 SING N N 59 PRD_001061 N4 C27 SING N N 60 PRD_001061 C30 C26 SING N N 61 PRD_001061 C30 C29 SING N N 62 PRD_001061 C24 C29 SING N N 63 PRD_001061 C24 O6 SING N N 64 PRD_001061 C29 N3 SING N N 65 PRD_001061 C26 H28 SING N N 66 PRD_001061 C26 H29 SING N N 67 PRD_001061 N3 H30 SING N N 68 PRD_001061 C27 H31 SING N N 69 PRD_001061 C27 H32 SING N N 70 PRD_001061 C27 H33 SING N N 71 PRD_001061 C28 H34 SING N N 72 PRD_001061 C28 H35 SING N N 73 PRD_001061 C28 H36 SING N N 74 PRD_001061 C29 H37 SING N N 75 PRD_001061 C30 H38 SING N N 76 PRD_001061 C30 H39 SING N N 77 PRD_001061 O6 H40 SING N N 78 PRD_001061 C24 H41 SING N N 79 PRD_001061 C24 H42 SING N N 80 PRD_001061 C1 N1 SING N N 81 PRD_001061 C10 N2 SING N N 82 PRD_001061 C16 N3 SING N N 83 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_001061 SMILES ACDLabs 12.01 "O=C(N(C)C)CCC(NC(=O)C(NC(=O)C(NC(=O)OCc1ccccc1)CC(C)C)Cc2ccccc2)CO" PRD_001061 InChI InChI 1.03 "InChI=1S/C30H42N4O6/c1-21(2)17-25(33-30(39)40-20-23-13-9-6-10-14-23)29(38)32-26(18-22-11-7-5-8-12-22)28(37)31-24(19-35)15-16-27(36)34(3)4/h5-14,21,24-26,35H,15-20H2,1-4H3,(H,31,37)(H,32,38)(H,33,39)" PRD_001061 InChIKey InChI 1.03 BBNVUPCWZSSVPF-UHFFFAOYSA-N PRD_001061 SMILES_CANONICAL CACTVS 3.370 "CC(C)C[C@H](NC(=O)OCc1ccccc1)C(=O)N[C@@H](Cc2ccccc2)C(=O)N[C@H](CO)CCC(=O)N(C)C" PRD_001061 SMILES CACTVS 3.370 "CC(C)C[CH](NC(=O)OCc1ccccc1)C(=O)N[CH](Cc2ccccc2)C(=O)N[CH](CO)CCC(=O)N(C)C" PRD_001061 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)C[C@@H](C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](CCC(=O)N(C)C)CO)NC(=O)OCc2ccccc2" PRD_001061 SMILES "OpenEye OEToolkits" 1.7.6 "CC(C)CC(C(=O)NC(Cc1ccccc1)C(=O)NC(CCC(=O)N(C)C)CO)NC(=O)OCc2ccccc2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD_001061 "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(benzyloxy)carbonyl]-L-leucyl-N-[(2R)-5-(dimethylamino)-1-hydroxy-5-oxopentan-2-yl]-L-phenylalaninamide" PRD_001061 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(phenylmethyl) N-[(2S)-1-[[(2S)-1-[[(2S)-5-(dimethylamino)-1-oxidanyl-5-oxidanylidene-pentan-2-yl]amino]-1-oxidanylidene-3-phenyl-propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]carbamate" #