data_PRDCC_001062 # _chem_comp.id PRD_001062 _chem_comp.name "peptide inhibitor, syc8" _chem_comp.formula "C28 H38 N4 O6" _chem_comp.formula_weight 526.625 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_001062 C1 C1 C 0 1 N N N -34.873 -38.455 18.314 3.797 1.092 0.066 PHQ 1 C1 polymer 1 1 1 ? ? ? PRD_001062 O1 O1 O 0 1 N N N -35.370 -39.565 18.462 3.874 1.992 0.878 PHQ 1 O1 polymer 1 1 2 ? ? ? PRD_001062 O2 O2 O 0 1 N N N -33.716 -38.307 19.028 4.900 0.404 -0.285 PHQ 1 O2 polymer 1 1 3 ? ? ? PRD_001062 C2 C2 C 0 1 N N N -33.366 -37.015 19.393 6.148 0.793 0.348 PHQ 1 C2 polymer 1 1 4 ? ? ? PRD_001062 C3 C3 C 0 1 Y N N -34.039 -36.855 20.614 7.264 -0.080 -0.164 PHQ 1 C3 polymer 1 1 5 ? ? ? PRD_001062 C4 C4 C 0 1 Y N N -34.938 -37.857 20.937 7.981 0.299 -1.283 PHQ 1 C4 polymer 1 1 6 ? ? ? PRD_001062 C5 C5 C 0 1 Y N N -35.643 -37.855 22.128 9.005 -0.502 -1.753 PHQ 1 C5 polymer 1 1 7 ? ? ? PRD_001062 C6 C6 C 0 1 Y N N -35.432 -36.847 23.054 9.312 -1.683 -1.103 PHQ 1 C6 polymer 1 1 8 ? ? ? PRD_001062 C7 C7 C 0 1 Y N N -34.512 -35.851 22.766 8.596 -2.062 0.017 PHQ 1 C7 polymer 1 1 9 ? ? ? PRD_001062 C8 C8 C 0 1 Y N N -33.810 -35.870 21.566 7.575 -1.258 0.489 PHQ 1 C8 polymer 1 1 10 ? ? ? PRD_001062 N1 N1 N 0 1 N N N -35.657 -37.448 17.915 2.605 0.778 -0.480 LEU 2 N polymer 1 1 11 ? ? ? PRD_001062 C9 C9 C 0 1 N N S -36.915 -37.676 17.130 1.387 1.446 -0.015 LEU 2 CA polymer 1 1 12 ? ? ? PRD_001062 C10 C10 C 0 1 N N N -36.899 -37.424 15.589 0.207 0.526 -0.201 LEU 2 C polymer 1 1 13 ? ? ? PRD_001062 O3 O3 O 0 1 N N N -36.526 -36.339 15.115 0.316 -0.468 -0.887 LEU 2 O polymer 1 1 14 ? ? ? PRD_001062 C11 C11 C 0 1 N N N -38.014 -36.696 17.591 1.168 2.727 -0.822 LEU 2 CB polymer 1 1 15 ? ? ? PRD_001062 C12 C12 C 0 1 N N N -38.337 -36.727 19.095 -0.016 3.501 -0.238 LEU 2 CG polymer 1 1 16 ? ? ? PRD_001062 C13 C13 C 0 1 N N N -39.418 -35.694 19.455 0.340 3.995 1.166 LEU 2 CD1 polymer 1 1 17 ? ? ? PRD_001062 C14 C14 C 0 1 N N N -38.860 -38.100 19.481 -0.334 4.699 -1.135 LEU 2 CD2 polymer 1 1 18 ? ? ? PRD_001062 N2 N2 N 0 1 N N N -37.515 -38.357 14.838 -0.968 0.810 0.394 PHE 3 N polymer 1 1 19 ? ? ? PRD_001062 C15 C15 C 0 1 N N S -37.539 -38.183 13.353 -2.080 -0.140 0.307 PHE 3 CA polymer 1 1 20 ? ? ? PRD_001062 C16 C16 C 0 1 N N N -38.490 -36.997 13.012 -3.384 0.597 0.476 PHE 3 C polymer 1 1 21 ? ? ? PRD_001062 O4 O4 O 0 1 N N N -39.564 -36.720 13.565 -3.384 1.797 0.651 PHE 3 O polymer 1 1 22 ? ? ? PRD_001062 C17 C17 C 0 1 N N N -37.952 -39.414 12.507 -1.942 -1.190 1.411 PHE 3 CB polymer 1 1 23 ? ? ? PRD_001062 C18 C18 C 0 1 Y N N -37.086 -40.677 12.687 -0.700 -2.009 1.172 PHE 3 CG polymer 1 1 24 ? ? ? PRD_001062 C19 C19 C 0 1 Y N N -35.834 -40.785 12.083 0.506 -1.611 1.719 PHE 3 CD1 polymer 1 1 25 ? ? ? PRD_001062 C20 C20 C 0 1 Y N N -37.575 -41.741 13.436 -0.766 -3.161 0.411 PHE 3 CD2 polymer 1 1 26 ? ? ? PRD_001062 C21 C21 C 0 1 Y N N -35.072 -41.939 12.246 1.646 -2.362 1.500 PHE 3 CE1 polymer 1 1 27 ? ? ? PRD_001062 C22 C22 C 0 1 Y N N -36.815 -42.893 13.600 0.373 -3.912 0.192 PHE 3 CE2 polymer 1 1 28 ? ? ? PRD_001062 C23 C23 C 0 1 Y N N -35.565 -42.994 13.005 1.580 -3.511 0.734 PHE 3 CZ polymer 1 1 29 ? ? ? PRD_001062 C24 C24 C 0 1 N N N -39.158 -35.325 10.108 -6.130 0.789 2.086 1HD 4 C polymer 1 1 30 ? ? ? PRD_001062 C25 C25 C 0 1 N N N -37.055 -32.385 13.620 -7.430 -1.076 -2.283 1HD 4 CD polymer 1 1 31 ? ? ? PRD_001062 N3 N3 N 0 1 N N N -37.946 -36.262 12.096 -4.550 -0.077 0.431 1HD 4 N polymer 1 1 32 ? ? ? PRD_001062 O5 O5 O 0 1 N N N -36.253 -31.779 12.933 -8.484 -1.484 -1.844 1HD 4 OE1 polymer 1 1 33 ? ? ? PRD_001062 C26 C26 C 0 1 N N S -38.564 -35.080 11.548 -5.817 0.639 0.595 1HD 4 CA polymer 1 1 34 ? ? ? PRD_001062 C27 C27 C 0 1 N N N -37.550 -33.907 11.794 -6.940 -0.148 -0.084 1HD 4 CB polymer 1 1 35 ? ? ? PRD_001062 C28 C28 C 0 1 N N N -37.164 -32.029 15.121 -7.065 -1.329 -3.723 1HD 4 C1 polymer 1 1 36 ? ? ? PRD_001062 N4 N4 N 0 1 N N N -37.630 -33.519 13.209 -6.585 -0.395 -1.484 1HD 4 N1 polymer 1 1 37 ? ? ? PRD_001062 O6 O6 O 0 1 N Y N -40.261 -35.827 9.842 -6.348 -0.502 2.659 1HD 4 O polymer 1 1 38 ? ? ? PRD_001062 H1 H1 H 0 1 N N N -32.278 -36.919 19.523 6.365 1.835 0.113 PHQ 1 H21 polymer 1 1 39 ? ? ? PRD_001062 H2 H2 H 0 1 N N N -33.713 -36.283 18.648 6.060 0.675 1.428 PHQ 1 H22 polymer 1 1 40 ? ? ? PRD_001062 H3 H3 H 0 1 N N N -35.094 -38.665 20.238 7.741 1.222 -1.791 PHQ 1 H41 polymer 1 1 41 ? ? ? PRD_001062 H4 H4 H 0 1 N N N -36.357 -38.639 22.335 9.565 -0.205 -2.628 PHQ 1 H51 polymer 1 1 42 ? ? ? PRD_001062 H5 H5 H 0 1 N N N -35.976 -36.837 23.987 10.112 -2.309 -1.470 PHQ 1 H61 polymer 1 1 43 ? ? ? PRD_001062 H6 H6 H 0 1 N N N -34.340 -35.057 23.477 8.835 -2.985 0.524 PHQ 1 H71 polymer 1 1 44 ? ? ? PRD_001062 H7 H7 H 0 1 N N N -33.073 -35.105 21.371 7.017 -1.553 1.366 PHQ 1 H81 polymer 1 1 45 ? ? ? PRD_001062 H8 H8 H 0 1 N N N -35.396 -36.511 18.148 2.554 0.109 -1.181 LEU 2 H polymer 1 1 46 ? ? ? PRD_001062 H9 H9 H 0 1 N N N -37.267 -38.703 17.307 1.490 1.694 1.042 LEU 2 HA polymer 1 1 47 ? ? ? PRD_001062 H10 H10 H 0 1 N N N -37.689 -35.677 17.335 2.065 3.344 -0.774 LEU 2 HB2 polymer 1 1 48 ? ? ? PRD_001062 H11 H11 H 0 1 N N N -38.936 -36.936 17.041 0.958 2.471 -1.860 LEU 2 HB3 polymer 1 1 49 ? ? ? PRD_001062 H12 H12 H 0 1 N N N -37.423 -36.509 19.666 -0.886 2.847 -0.183 LEU 2 HG polymer 1 1 50 ? ? ? PRD_001062 H13 H13 H 0 0 N N N -39.626 -35.741 20.534 -0.527 4.483 1.610 LEU 2 HD11 polymer 1 1 51 ? ? ? PRD_001062 H14 H14 H 0 0 N N N -39.063 -34.686 19.194 0.638 3.149 1.784 LEU 2 HD12 polymer 1 1 52 ? ? ? PRD_001062 H15 H15 H 0 0 N N N -40.338 -35.916 18.894 1.164 4.707 1.102 LEU 2 HD13 polymer 1 1 53 ? ? ? PRD_001062 H16 H16 H 0 0 N N N -39.089 -38.117 20.557 -0.587 4.347 -2.135 LEU 2 HD21 polymer 1 1 54 ? ? ? PRD_001062 H17 H17 H 0 0 N N N -39.773 -38.319 18.908 -1.177 5.250 -0.719 LEU 2 HD22 polymer 1 1 55 ? ? ? PRD_001062 H18 H18 H 0 0 N N N -38.096 -38.859 19.257 0.536 5.353 -1.190 LEU 2 HD23 polymer 1 1 56 ? ? ? PRD_001062 H19 H19 H 0 1 N N N -37.948 -39.151 15.265 -1.078 1.642 0.880 PHE 3 H polymer 1 1 57 ? ? ? PRD_001062 H20 H20 H 0 1 N N N -36.529 -37.891 13.031 -2.064 -0.631 -0.666 PHE 3 HA polymer 1 1 58 ? ? ? PRD_001062 H21 H21 H 0 1 N N N -38.987 -39.674 12.774 -1.869 -0.693 2.378 PHE 3 HB2 polymer 1 1 59 ? ? ? PRD_001062 H22 H22 H 0 1 N N N -37.909 -39.124 11.447 -2.815 -1.843 1.403 PHE 3 HB3 polymer 1 1 60 ? ? ? PRD_001062 H23 H23 H 0 1 N N N -35.453 -39.970 11.486 0.558 -0.713 2.317 PHE 3 HD1 polymer 1 1 61 ? ? ? PRD_001062 H24 H24 H 0 1 N N N -38.551 -41.672 13.893 -1.709 -3.474 -0.012 PHE 3 HD2 polymer 1 1 62 ? ? ? PRD_001062 H25 H25 H 0 1 N N N -34.099 -42.014 11.783 2.588 -2.051 1.926 PHE 3 HE1 polymer 1 1 63 ? ? ? PRD_001062 H26 H26 H 0 1 N N N -37.198 -43.711 14.192 0.321 -4.812 -0.402 PHE 3 HE2 polymer 1 1 64 ? ? ? PRD_001062 H27 H27 H 0 1 N N N -34.977 -43.891 13.132 2.470 -4.098 0.563 PHE 3 HZ polymer 1 1 65 ? ? ? PRD_001062 H28 H28 H 0 1 N N N -37.047 -36.529 11.749 -4.550 -1.037 0.291 1HD 4 H2 polymer 1 1 66 ? ? ? PRD_001062 H29 H29 H 0 1 N N N -39.432 -34.852 12.184 -5.738 1.626 0.140 1HD 4 HA polymer 1 1 67 ? ? ? PRD_001062 H30 H30 H 0 1 N N N -36.529 -34.241 11.557 -7.078 -1.100 0.429 1HD 4 H5 polymer 1 1 68 ? ? ? PRD_001062 H31 H31 H 0 1 N N N -37.812 -33.049 11.157 -7.865 0.427 -0.040 1HD 4 H6 polymer 1 1 69 ? ? ? PRD_001062 H32 H32 H 0 1 N N N -36.451 -31.226 15.361 -7.431 -0.509 -4.341 1HD 4 H7 polymer 1 1 70 ? ? ? PRD_001062 H33 H33 H 0 1 N N N -38.187 -31.690 15.344 -5.981 -1.398 -3.817 1HD 4 H8 polymer 1 1 71 ? ? ? PRD_001062 H34 H34 H 0 1 N N N -36.932 -32.918 15.726 -7.518 -2.264 -4.054 1HD 4 H9 polymer 1 1 72 ? ? ? PRD_001062 H35 H35 H 0 1 N N N -38.113 -34.102 13.862 -5.742 -0.068 -1.836 1HD 4 H10 polymer 1 1 73 ? ? ? PRD_001062 H36 H36 H 0 1 N N N -40.375 -35.861 8.899 -6.552 -0.483 3.604 1HD 4 H11 polymer 1 1 74 ? ? ? PRD_001062 H37 H37 H 0 1 N N N -39.172 -34.334 9.632 -5.290 1.271 2.586 1HD 4 H12 polymer 1 1 75 ? ? ? PRD_001062 H38 H38 H 0 1 N N N -38.422 -35.965 9.600 -7.025 1.398 2.210 1HD 4 H13 polymer 1 1 76 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_001062 C1 O1 DOUB N N 1 PRD_001062 C1 O2 SING N N 2 PRD_001062 O2 C2 SING N N 3 PRD_001062 C2 C3 SING N N 4 PRD_001062 C2 H1 SING N N 5 PRD_001062 C2 H2 SING N N 6 PRD_001062 C3 C4 DOUB Y N 7 PRD_001062 C3 C8 SING Y N 8 PRD_001062 C4 C5 SING Y N 9 PRD_001062 C4 H3 SING N N 10 PRD_001062 C5 C6 DOUB Y N 11 PRD_001062 C5 H4 SING N N 12 PRD_001062 C6 C7 SING Y N 13 PRD_001062 C6 H5 SING N N 14 PRD_001062 C7 C8 DOUB Y N 15 PRD_001062 C7 H6 SING N N 16 PRD_001062 C8 H7 SING N N 17 PRD_001062 N1 C9 SING N N 18 PRD_001062 N1 H8 SING N N 19 PRD_001062 C9 C10 SING N N 20 PRD_001062 C9 C11 SING N N 21 PRD_001062 C9 H9 SING N N 22 PRD_001062 C10 O3 DOUB N N 23 PRD_001062 C11 C12 SING N N 24 PRD_001062 C11 H10 SING N N 25 PRD_001062 C11 H11 SING N N 26 PRD_001062 C12 C13 SING N N 27 PRD_001062 C12 C14 SING N N 28 PRD_001062 C12 H12 SING N N 29 PRD_001062 C13 H13 SING N N 30 PRD_001062 C13 H14 SING N N 31 PRD_001062 C13 H15 SING N N 32 PRD_001062 C14 H16 SING N N 33 PRD_001062 C14 H17 SING N N 34 PRD_001062 C14 H18 SING N N 35 PRD_001062 N2 C15 SING N N 36 PRD_001062 N2 H19 SING N N 37 PRD_001062 C15 C16 SING N N 38 PRD_001062 C15 C17 SING N N 39 PRD_001062 C15 H20 SING N N 40 PRD_001062 C16 O4 DOUB N N 41 PRD_001062 C17 C18 SING N N 42 PRD_001062 C17 H21 SING N N 43 PRD_001062 C17 H22 SING N N 44 PRD_001062 C18 C19 DOUB Y N 45 PRD_001062 C18 C20 SING Y N 46 PRD_001062 C19 C21 SING Y N 47 PRD_001062 C19 H23 SING N N 48 PRD_001062 C20 C22 DOUB Y N 49 PRD_001062 C20 H24 SING N N 50 PRD_001062 C21 C23 DOUB Y N 51 PRD_001062 C21 H25 SING N N 52 PRD_001062 C22 C23 SING Y N 53 PRD_001062 C22 H26 SING N N 54 PRD_001062 C23 H27 SING N N 55 PRD_001062 C24 C26 SING N N 56 PRD_001062 C26 C27 SING N N 57 PRD_001062 C26 N3 SING N N 58 PRD_001062 C27 N4 SING N N 59 PRD_001062 O5 C25 DOUB N N 60 PRD_001062 N4 C25 SING N N 61 PRD_001062 C25 C28 SING N N 62 PRD_001062 C24 O6 SING N N 63 PRD_001062 N3 H28 SING N N 64 PRD_001062 C26 H29 SING N N 65 PRD_001062 C27 H30 SING N N 66 PRD_001062 C27 H31 SING N N 67 PRD_001062 C28 H32 SING N N 68 PRD_001062 C28 H33 SING N N 69 PRD_001062 C28 H34 SING N N 70 PRD_001062 N4 H35 SING N N 71 PRD_001062 O6 H36 SING N N 72 PRD_001062 C24 H37 SING N N 73 PRD_001062 C24 H38 SING N N 74 PRD_001062 C1 N1 SING N N 75 PRD_001062 C10 N2 SING N N 76 PRD_001062 C16 N3 SING N N 77 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_001062 SMILES ACDLabs 12.01 "O=C(NCC(NC(=O)C(NC(=O)C(NC(=O)OCc1ccccc1)CC(C)C)Cc2ccccc2)CO)C" PRD_001062 InChI InChI 1.03 "InChI=1S/C28H38N4O6/c1-19(2)14-24(32-28(37)38-18-22-12-8-5-9-13-22)27(36)31-25(15-21-10-6-4-7-11-21)26(35)30-23(17-33)16-29-20(3)34/h4-13,19,23-25,33H,14-18H2,1-3H3,(H,29,34)(H,30,35)(H,31,36)(H,32,37)" PRD_001062 InChIKey InChI 1.03 VROYXKORFBGZNY-UHFFFAOYSA-N PRD_001062 SMILES_CANONICAL CACTVS 3.370 "CC(C)C[C@H](NC(=O)OCc1ccccc1)C(=O)N[C@@H](Cc2ccccc2)C(=O)N[C@H](CO)CNC(C)=O" PRD_001062 SMILES CACTVS 3.370 "CC(C)C[CH](NC(=O)OCc1ccccc1)C(=O)N[CH](Cc2ccccc2)C(=O)N[CH](CO)CNC(C)=O" PRD_001062 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)C[C@@H](C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](CNC(=O)C)CO)NC(=O)OCc2ccccc2" PRD_001062 SMILES "OpenEye OEToolkits" 1.7.6 "CC(C)CC(C(=O)NC(Cc1ccccc1)C(=O)NC(CNC(=O)C)CO)NC(=O)OCc2ccccc2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD_001062 "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(benzyloxy)carbonyl]-L-leucyl-N-[(2R)-1-(acetylamino)-3-hydroxypropan-2-yl]-L-phenylalaninamide" PRD_001062 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(phenylmethyl) N-[(2S)-1-[[(2S)-1-[[(2S)-1-acetamido-3-oxidanyl-propan-2-yl]amino]-1-oxidanylidene-3-phenyl-propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]carbamate" #