data_PRDCC_001078 # _chem_comp.id PRD_001078 _chem_comp.name "Peptide inhibitor MPT-DPP-DAR-G-DPN-NH2" _chem_comp.formula "C23 H38 N9 O5 S" _chem_comp.formula_weight 552.670 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_001078 C1 C1 C 0 1 N N N 4.718 -0.035 37.658 8.193 -2.064 0.453 MPT 1 CA polymer 1 1 1 ? ? ? PRD_001078 C2 C2 C 0 1 N N N 4.240 1.175 36.886 6.860 -1.361 0.451 MPT 1 C polymer 1 1 2 ? ? ? PRD_001078 O1 O1 O 0 1 N N N 3.348 1.068 36.055 6.538 -0.668 1.393 MPT 1 O polymer 1 1 3 ? ? ? PRD_001078 C3 C3 C 0 1 N N N 3.759 -1.202 37.421 8.939 -1.739 1.749 MPT 1 CB polymer 1 1 4 ? ? ? PRD_001078 S1 S1 S 0 1 N N N 4.114 -2.567 38.565 10.544 -2.585 1.751 MPT 1 SG polymer 1 1 5 ? ? ? PRD_001078 N1 N1 N 0 1 N N N 6.596 3.618 35.285 4.829 -0.800 -3.047 DPP 2 N polymer 1 1 6 ? ? ? PRD_001078 C4 C4 C 0 1 N N S 5.158 3.559 35.085 3.984 -1.144 -1.896 DPP 2 CA polymer 1 1 7 ? ? ? PRD_001078 C5 C5 C 0 1 N N N 4.617 4.759 34.342 2.707 -0.346 -1.954 DPP 2 C polymer 1 1 8 ? ? ? PRD_001078 O2 O2 O 0 1 N N N 5.155 5.857 34.354 2.654 0.666 -2.620 DPP 2 O polymer 1 1 9 ? ? ? PRD_001078 C6 C6 C 0 1 N N N 4.489 3.546 36.452 4.730 -0.819 -0.600 DPP 2 CB polymer 1 1 10 ? ? ? PRD_001078 N2 N2 N 0 1 N N N 4.831 2.332 37.169 6.026 -1.502 -0.598 DPP 2 NG polymer 1 1 11 ? ? ? PRD_001078 N3 N3 N 0 1 N N N 3.512 4.503 33.667 1.623 -0.758 -1.267 DAR 3 N polymer 1 1 12 ? ? ? PRD_001078 C7 C7 C 0 1 N N R 2.700 5.434 32.876 0.382 0.018 -1.324 DAR 3 CA polymer 1 1 13 ? ? ? PRD_001078 C8 C8 C 0 1 N N N 3.251 5.723 31.492 0.433 1.140 -0.285 DAR 3 CB polymer 1 1 14 ? ? ? PRD_001078 C9 C9 C 0 1 N N N 2.031 6.012 30.606 1.544 2.126 -0.653 DAR 3 CG polymer 1 1 15 ? ? ? PRD_001078 C10 C10 C 0 1 N N N 1.957 5.245 29.281 1.595 3.247 0.386 DAR 3 CD polymer 1 1 16 ? ? ? PRD_001078 N4 N4 N 0 1 N N N 2.147 6.219 28.197 2.659 4.191 0.034 DAR 3 NE polymer 1 1 17 ? ? ? PRD_001078 C11 C11 C 0 1 N N N 1.284 7.109 27.689 2.894 5.283 0.823 DAR 3 CZ polymer 1 1 18 ? ? ? PRD_001078 N5 N5 N 0 1 N N N 1.632 7.863 26.734 2.155 5.488 1.913 DAR 3 NH1 polymer 1 1 19 ? ? ? PRD_001078 N6 N6 N 1 1 N N N 0.056 7.224 28.194 3.860 6.141 0.502 DAR 3 NH2 polymer 1 1 20 ? ? ? PRD_001078 C12 C12 C 0 1 N N N 2.304 6.718 33.552 -0.789 -0.885 -1.031 DAR 3 C polymer 1 1 21 ? ? ? PRD_001078 O3 O3 O 0 1 N N N 2.667 7.801 33.125 -0.604 -2.061 -0.797 DAR 3 O polymer 1 1 22 ? ? ? PRD_001078 N7 N7 N 0 1 N N N 1.489 6.606 34.592 -2.041 -0.386 -1.028 GLY 4 N polymer 1 1 23 ? ? ? PRD_001078 C13 C13 C 0 1 N N N 0.959 7.745 35.326 -3.179 -1.263 -0.743 GLY 4 CA polymer 1 1 24 ? ? ? PRD_001078 C14 C14 C 0 1 N N N -0.362 8.114 34.644 -4.456 -0.465 -0.801 GLY 4 C polymer 1 1 25 ? ? ? PRD_001078 O4 O4 O 0 1 N N N -0.809 7.393 33.759 -4.419 0.720 -1.056 GLY 4 O polymer 1 1 26 ? ? ? PRD_001078 N8 N8 N 0 1 N N N -0.935 9.250 35.055 -5.639 -1.069 -0.570 DPN 5 N polymer 1 1 27 ? ? ? PRD_001078 C15 C15 C 0 1 N N R -2.190 9.870 34.589 -6.880 -0.293 -0.627 DPN 5 CA polymer 1 1 28 ? ? ? PRD_001078 C16 C16 C 0 1 N N N -2.334 10.123 33.121 -7.360 -0.218 -2.053 DPN 5 C polymer 1 1 29 ? ? ? PRD_001078 O5 O5 O 0 1 N N N -3.426 10.059 32.570 -6.728 -0.759 -2.936 DPN 5 O polymer 1 1 30 ? ? ? PRD_001078 C17 C17 C 0 1 N N N -3.366 9.141 35.243 -7.946 -0.973 0.235 DPN 5 CB polymer 1 1 31 ? ? ? PRD_001078 C18 C18 C 0 1 Y N N -3.162 9.741 36.610 -7.520 -0.938 1.680 DPN 5 CG polymer 1 1 32 ? ? ? PRD_001078 C19 C19 C 0 1 Y N N -2.979 11.115 36.697 -7.882 0.128 2.482 DPN 5 CD1 polymer 1 1 33 ? ? ? PRD_001078 C20 C20 C 0 1 Y N N -3.067 8.952 37.742 -6.772 -1.976 2.205 DPN 5 CD2 polymer 1 1 34 ? ? ? PRD_001078 C21 C21 C 0 1 Y N N -2.742 11.704 37.926 -7.491 0.160 3.808 DPN 5 CE1 polymer 1 1 35 ? ? ? PRD_001078 C22 C22 C 0 1 Y N N -2.834 9.546 38.976 -6.381 -1.944 3.531 DPN 5 CE2 polymer 1 1 36 ? ? ? PRD_001078 C23 C23 C 0 1 Y N N -2.675 10.921 39.068 -6.739 -0.875 4.331 DPN 5 CZ polymer 1 1 37 ? ? ? PRD_001078 N9 N9 N 0 1 N N N -1.204 10.478 32.525 -8.493 0.451 -2.349 NH2 6 N polymer 1 1 38 ? ? ? PRD_001078 H1 H1 H 0 1 N N N 5.726 -0.313 37.316 8.037 -3.140 0.384 MPT 1 HA1 polymer 1 1 39 ? ? ? PRD_001078 H2 H2 H 0 1 N N N 4.748 0.203 38.732 8.783 -1.727 -0.400 MPT 1 HA2 polymer 1 1 40 ? ? ? PRD_001078 H3 H3 H 0 1 N N N 2.726 -0.858 37.579 9.096 -0.662 1.817 MPT 1 HB1 polymer 1 1 41 ? ? ? PRD_001078 H4 H4 H 0 1 N N N 3.873 -1.559 36.387 8.349 -2.075 2.601 MPT 1 HB2 polymer 1 1 42 ? ? ? PRD_001078 H5 H5 H 0 1 N N N 3.220 -3.447 38.222 11.079 -2.214 2.928 MPT 1 HG polymer 1 1 43 ? ? ? PRD_001078 H6 H6 H 0 1 N N N 6.898 2.803 35.779 4.385 -1.065 -3.914 DPP 2 H polymer 1 1 44 ? ? ? PRD_001078 H7 H7 H 0 1 N Y N 7.055 3.658 34.397 5.061 0.182 -3.045 DPP 2 H2 polymer 1 1 45 ? ? ? PRD_001078 H8 H8 H 0 1 N N N 4.888 2.642 34.541 3.749 -2.208 -1.923 DPP 2 HA polymer 1 1 46 ? ? ? PRD_001078 H9 H9 H 0 1 N N N 4.829 4.417 37.031 4.886 0.257 -0.532 DPP 2 HB2 polymer 1 1 47 ? ? ? PRD_001078 H10 H10 H 0 1 N N N 3.398 3.596 36.322 4.140 -1.156 0.252 DPP 2 HB3 polymer 1 1 48 ? ? ? PRD_001078 H11 H11 H 0 1 N N N 5.524 2.366 37.889 6.283 -2.056 -1.352 DPP 2 HG2 polymer 1 1 49 ? ? ? PRD_001078 H12 H12 H 0 1 N N N 3.188 3.557 33.699 1.665 -1.567 -0.735 DAR 3 H polymer 1 1 50 ? ? ? PRD_001078 H13 H13 H 0 1 N N N 1.752 4.907 32.694 0.268 0.449 -2.318 DAR 3 HA polymer 1 1 51 ? ? ? PRD_001078 H14 H14 H 0 1 N N N 3.919 6.597 31.521 -0.524 1.661 -0.265 DAR 3 HB2 polymer 1 1 52 ? ? ? PRD_001078 H15 H15 H 0 1 N N N 3.803 4.852 31.110 0.636 0.715 0.699 DAR 3 HB3 polymer 1 1 53 ? ? ? PRD_001078 H16 H16 H 0 1 N N N 1.130 5.766 31.186 2.501 1.604 -0.673 DAR 3 HG2 polymer 1 1 54 ? ? ? PRD_001078 H17 H17 H 0 1 N N N 2.034 7.087 30.371 1.341 2.550 -1.636 DAR 3 HG3 polymer 1 1 55 ? ? ? PRD_001078 H18 H18 H 0 1 N N N 2.749 4.482 29.244 0.638 3.769 0.406 DAR 3 HD2 polymer 1 1 56 ? ? ? PRD_001078 H19 H19 H 0 1 N N N 0.975 4.760 29.182 1.798 2.823 1.370 DAR 3 HD3 polymer 1 1 57 ? ? ? PRD_001078 H20 H20 H 0 1 N N N 3.054 6.217 27.777 3.196 4.042 -0.760 DAR 3 HE polymer 1 1 58 ? ? ? PRD_001078 H21 H21 H 0 0 N N N 0.988 8.535 26.367 1.451 4.863 2.146 DAR 3 HH11 polymer 1 1 59 ? ? ? PRD_001078 H22 H22 H 0 0 N N N 2.551 7.787 26.346 2.322 6.263 2.473 DAR 3 HH12 polymer 1 1 60 ? ? ? PRD_001078 H23 H23 H 0 0 N N N -0.578 7.900 27.818 4.398 5.992 -0.291 DAR 3 HH21 polymer 1 1 61 ? ? ? PRD_001078 H24 H24 H 0 0 N N N -0.232 6.634 28.949 4.027 6.916 1.062 DAR 3 HH22 polymer 1 1 62 ? ? ? PRD_001078 H25 H25 H 0 1 N N N 1.224 5.688 34.888 -2.188 0.555 -1.214 GLY 4 H polymer 1 1 63 ? ? ? PRD_001078 H26 H26 H 0 1 N N N 0.783 7.473 36.377 -3.215 -2.063 -1.483 GLY 4 HA2 polymer 1 1 64 ? ? ? PRD_001078 H27 H27 H 0 1 N N N 1.662 8.590 35.279 -3.065 -1.695 0.252 GLY 4 HA3 polymer 1 1 65 ? ? ? PRD_001078 H28 H28 H 0 1 N N N -0.448 9.745 35.774 -5.668 -2.017 -0.367 DPN 5 H polymer 1 1 66 ? ? ? PRD_001078 H29 H29 H 0 1 N N N -2.199 10.870 35.047 -6.697 0.714 -0.252 DPN 5 HA polymer 1 1 67 ? ? ? PRD_001078 H30 H30 H 0 1 N N N -4.336 9.410 34.799 -8.894 -0.446 0.123 DPN 5 HB2 polymer 1 1 68 ? ? ? PRD_001078 H31 H31 H 0 1 N N N -3.249 8.047 35.234 -8.065 -2.008 -0.084 DPN 5 HB3 polymer 1 1 69 ? ? ? PRD_001078 H32 H32 H 0 1 N N N -3.022 11.723 35.806 -8.469 0.937 2.073 DPN 5 HD1 polymer 1 1 70 ? ? ? PRD_001078 H33 H33 H 0 1 N N N -3.173 7.880 37.667 -6.494 -2.811 1.580 DPN 5 HD2 polymer 1 1 71 ? ? ? PRD_001078 H34 H34 H 0 1 N N N -2.609 12.774 37.996 -7.773 0.993 4.434 DPN 5 HE1 polymer 1 1 72 ? ? ? PRD_001078 H35 H35 H 0 1 N N N -2.777 8.936 39.865 -5.798 -2.755 3.941 DPN 5 HE2 polymer 1 1 73 ? ? ? PRD_001078 H36 H36 H 0 1 N N N -2.499 11.381 40.029 -6.433 -0.851 5.367 DPN 5 HZ polymer 1 1 74 ? ? ? PRD_001078 H37 H37 H 0 1 N N N -1.205 10.718 31.554 -8.998 0.883 -1.643 NH2 6 HN1 polymer 1 1 75 ? ? ? PRD_001078 H38 H38 H 0 1 N N N -0.351 10.505 33.046 -8.802 0.499 -3.267 NH2 6 HN2 polymer 1 1 76 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_001078 C1 C2 SING N N 1 PRD_001078 C1 C3 SING N N 2 PRD_001078 C1 H1 SING N N 3 PRD_001078 C1 H2 SING N N 4 PRD_001078 C2 O1 DOUB N N 5 PRD_001078 C3 S1 SING N N 6 PRD_001078 C3 H3 SING N N 7 PRD_001078 C3 H4 SING N N 8 PRD_001078 S1 H5 SING N N 9 PRD_001078 N1 C4 SING N N 10 PRD_001078 N1 H6 SING N N 11 PRD_001078 N1 H7 SING N N 12 PRD_001078 C4 C5 SING N N 13 PRD_001078 C4 C6 SING N N 14 PRD_001078 C4 H8 SING N N 15 PRD_001078 C5 O2 DOUB N N 16 PRD_001078 C6 N2 SING N N 17 PRD_001078 C6 H9 SING N N 18 PRD_001078 C6 H10 SING N N 19 PRD_001078 N2 H11 SING N N 20 PRD_001078 N3 C7 SING N N 21 PRD_001078 N3 H12 SING N N 22 PRD_001078 C7 C8 SING N N 23 PRD_001078 C7 C12 SING N N 24 PRD_001078 C7 H13 SING N N 25 PRD_001078 C8 C9 SING N N 26 PRD_001078 C8 H14 SING N N 27 PRD_001078 C8 H15 SING N N 28 PRD_001078 C9 C10 SING N N 29 PRD_001078 C9 H16 SING N N 30 PRD_001078 C9 H17 SING N N 31 PRD_001078 C10 N4 SING N N 32 PRD_001078 C10 H18 SING N N 33 PRD_001078 C10 H19 SING N N 34 PRD_001078 N4 C11 SING N N 35 PRD_001078 N4 H20 SING N N 36 PRD_001078 C11 N5 SING N N 37 PRD_001078 C11 N6 DOUB N N 38 PRD_001078 N5 H21 SING N N 39 PRD_001078 N5 H22 SING N N 40 PRD_001078 N6 H23 SING N N 41 PRD_001078 N6 H24 SING N N 42 PRD_001078 C12 O3 DOUB N N 43 PRD_001078 N7 C13 SING N N 44 PRD_001078 N7 H25 SING N N 45 PRD_001078 C13 C14 SING N N 46 PRD_001078 C13 H26 SING N N 47 PRD_001078 C13 H27 SING N N 48 PRD_001078 C14 O4 DOUB N N 49 PRD_001078 N8 C15 SING N N 50 PRD_001078 N8 H28 SING N N 51 PRD_001078 C15 C16 SING N N 52 PRD_001078 C15 C17 SING N N 53 PRD_001078 C15 H29 SING N N 54 PRD_001078 C16 O5 DOUB N N 55 PRD_001078 C17 C18 SING N N 56 PRD_001078 C17 H30 SING N N 57 PRD_001078 C17 H31 SING N N 58 PRD_001078 C18 C19 DOUB Y N 59 PRD_001078 C18 C20 SING Y N 60 PRD_001078 C19 C21 SING Y N 61 PRD_001078 C19 H32 SING N N 62 PRD_001078 C20 C22 DOUB Y N 63 PRD_001078 C20 H33 SING N N 64 PRD_001078 C21 C23 DOUB Y N 65 PRD_001078 C21 H34 SING N N 66 PRD_001078 C22 C23 SING Y N 67 PRD_001078 C22 H35 SING N N 68 PRD_001078 C23 H36 SING N N 69 PRD_001078 N9 H37 SING N N 70 PRD_001078 N9 H38 SING N N 71 PRD_001078 C2 N2 SING N N 72 PRD_001078 C5 N3 SING N N 73 PRD_001078 C12 N7 SING N N 74 PRD_001078 C14 N8 SING N N 75 PRD_001078 C16 N9 SING N N 76 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_001078 SMILES ACDLabs 12.01 "O=C(NCC(N)C(=O)NC(C(=O)NCC(=O)NC(C(=O)N)Cc1ccccc1)CCCNC(=[NH2+])\N)CCS" PRD_001078 InChI InChI 1.03 "InChI=1S/C23H37N9O5S/c24-15(12-29-18(33)8-10-38)21(36)32-16(7-4-9-28-23(26)27)22(37)30-13-19(34)31-17(20(25)35)11-14-5-2-1-3-6-14/h1-3,5-6,15-17,38H,4,7-13,24H2,(H2,25,35)(H,29,33)(H,30,37)(H,31,34)(H,32,36)(H4,26,27,28)/p+1/t15-,16+,17+/m0/s1" PRD_001078 InChIKey InChI 1.03 KVSMZXZGQXJTRJ-GVDBMIGSSA-O PRD_001078 SMILES_CANONICAL CACTVS 3.370 "N[C@@H](CNC(=O)CCS)C(=O)N[C@H](CCCNC(N)=[NH2+])C(=O)NCC(=O)N[C@H](Cc1ccccc1)C(N)=O" PRD_001078 SMILES CACTVS 3.370 "N[CH](CNC(=O)CCS)C(=O)N[CH](CCCNC(N)=[NH2+])C(=O)NCC(=O)N[CH](Cc1ccccc1)C(N)=O" PRD_001078 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)C[C@H](C(=O)N)NC(=O)CNC(=O)[C@@H](CCCNC(=[NH2+])N)NC(=O)[C@H](CNC(=O)CCS)N" PRD_001078 SMILES "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)CC(C(=O)N)NC(=O)CNC(=O)C(CCCNC(=[NH2+])N)NC(=O)C(CNC(=O)CCS)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD_001078 "SYSTEMATIC NAME" ACDLabs 12.01 "3-[(3-sulfanylpropanoyl)amino]-L-alanyl-N~5~-[amino(iminio)methyl]-D-ornithylglycyl-D-phenylalaninamide" PRD_001078 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[azanyl-[[(4R)-5-[[2-[[(2R)-1-azanyl-1-oxidanylidene-3-phenyl-propan-2-yl]amino]-2-oxidanylidene-ethyl]amino]-4-[[(2S)-2-azanyl-3-(3-sulfanylpropanoylamino)propanoyl]amino]-5-oxidanylidene-pentyl]amino]methylidene]azanium" #