data_PRDCC_001080 # _chem_comp.id PRD_001080 _chem_comp.name "Peptide inhibitor MPT-DPP-ARG-G-LEU-NH2" _chem_comp.formula "C20 H40 N9 O5 S" _chem_comp.formula_weight 518.654 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_001080 C1 C1 C 0 1 N N N 4.508 -0.057 37.639 7.864 2.286 0.396 MPT 1 CA polymer 1 1 1 ? ? ? PRD_001080 C2 C2 C 0 1 N N N 4.195 1.230 36.951 6.436 2.072 -0.033 MPT 1 C polymer 1 1 2 ? ? ? PRD_001080 O1 O1 O 0 1 N N N 3.284 1.286 36.127 5.839 2.954 -0.613 MPT 1 O polymer 1 1 3 ? ? ? PRD_001080 C3 C3 C 0 1 N N N 3.733 -1.198 37.021 8.317 3.688 -0.017 MPT 1 CB polymer 1 1 4 ? ? ? PRD_001080 S1 S1 S 0 1 N N N 4.072 -2.649 37.980 10.036 3.945 0.500 MPT 1 SG polymer 1 1 5 ? ? ? PRD_001080 N1 N1 N 0 1 N N N 6.760 3.549 35.377 4.912 -1.705 -0.323 DPP 2 N polymer 1 1 6 ? ? ? PRD_001080 C4 C4 C 0 1 N N S 5.339 3.527 35.250 3.981 -0.709 0.223 DPP 2 CA polymer 1 1 7 ? ? ? PRD_001080 C5 C5 C 0 1 N N N 5.014 4.685 34.348 2.596 -0.969 -0.313 DPP 2 C polymer 1 1 8 ? ? ? PRD_001080 O2 O2 O 0 1 N N N 5.735 5.661 34.366 2.450 -1.627 -1.321 DPP 2 O polymer 1 1 9 ? ? ? PRD_001080 C6 C6 C 0 1 N N N 4.695 3.638 36.598 4.433 0.693 -0.191 DPP 2 CB polymer 1 1 10 ? ? ? PRD_001080 N2 N2 N 0 1 N N N 4.980 2.393 37.284 5.822 0.901 0.227 DPP 2 NG polymer 1 1 11 ? ? ? PRD_001080 N3 N3 N 0 1 N N N 3.838 4.609 33.479 1.521 -0.469 0.328 ARG 3 N polymer 1 1 12 ? ? ? PRD_001080 C7 C7 C 0 1 N N S 3.544 5.735 32.608 0.175 -0.721 -0.193 ARG 3 CA polymer 1 1 13 ? ? ? PRD_001080 C8 C8 C 0 1 N N N 2.776 6.802 33.347 -0.755 0.371 0.268 ARG 3 C polymer 1 1 14 ? ? ? PRD_001080 O3 O3 O 0 1 N N N 2.945 7.984 33.039 -0.335 1.272 0.963 ARG 3 O polymer 1 1 15 ? ? ? PRD_001080 C9 C9 C 0 1 N N N 2.820 5.259 31.382 -0.327 -2.071 0.324 ARG 3 CB polymer 1 1 16 ? ? ? PRD_001080 C10 C10 C 0 1 N N N 1.502 5.953 31.239 0.545 -3.192 -0.246 ARG 3 CG polymer 1 1 17 ? ? ? PRD_001080 C11 C11 C 0 1 N N N 0.974 5.793 29.806 0.042 -4.541 0.271 ARG 3 CD polymer 1 1 18 ? ? ? PRD_001080 N4 N4 N 0 1 N N N 1.950 6.168 28.796 0.877 -5.615 -0.275 ARG 3 NE polymer 1 1 19 ? ? ? PRD_001080 C12 C12 C 0 1 N N N 1.695 7.316 27.929 0.615 -6.917 0.051 ARG 3 CZ polymer 1 1 20 ? ? ? PRD_001080 N5 N5 N 0 1 N N N 2.561 7.676 26.982 -0.398 -7.210 0.864 ARG 3 NH1 polymer 1 1 21 ? ? ? PRD_001080 N6 N6 N 1 1 N N N 0.597 7.999 28.098 1.374 -7.893 -0.446 ARG 3 NH2 polymer 1 1 22 ? ? ? PRD_001080 N7 N7 N 0 1 N N N 1.843 6.472 34.443 -2.053 0.347 -0.093 GLY 4 N polymer 1 1 23 ? ? ? PRD_001080 C13 C13 C 0 1 N N N 1.156 7.589 35.090 -2.958 1.409 0.356 GLY 4 CA polymer 1 1 24 ? ? ? PRD_001080 C14 C14 C 0 1 N N N -0.135 7.891 34.347 -4.342 1.149 -0.181 GLY 4 C polymer 1 1 25 ? ? ? PRD_001080 O4 O4 O 0 1 N N N -0.394 7.283 33.332 -4.552 0.174 -0.869 GLY 4 O polymer 1 1 26 ? ? ? PRD_001080 N8 N8 N 0 1 N N N -1.076 8.894 34.843 -5.346 2.002 0.105 LEU 5 N polymer 1 1 27 ? ? ? PRD_001080 C15 C15 C 0 1 N N S -2.328 9.215 34.163 -6.692 1.749 -0.416 LEU 5 CA polymer 1 1 28 ? ? ? PRD_001080 C16 C16 C 0 1 N N N -2.154 9.972 32.914 -6.804 2.312 -1.809 LEU 5 C polymer 1 1 29 ? ? ? PRD_001080 O5 O5 O 0 1 N N N -3.074 10.029 32.114 -5.854 2.868 -2.317 LEU 5 O polymer 1 1 30 ? ? ? PRD_001080 C17 C17 C 0 1 N N N -3.123 10.197 34.997 -7.724 2.422 0.491 LEU 5 CB polymer 1 1 31 ? ? ? PRD_001080 C18 C18 C 0 1 N N N -3.540 9.522 36.277 -7.695 1.765 1.872 LEU 5 CG polymer 1 1 32 ? ? ? PRD_001080 C19 C19 C 0 1 N N N -3.811 10.582 37.298 -8.637 2.518 2.814 LEU 5 CD1 polymer 1 1 33 ? ? ? PRD_001080 C20 C20 C 0 1 N N N -4.750 8.692 36.011 -8.149 0.309 1.754 LEU 5 CD2 polymer 1 1 34 ? ? ? PRD_001080 N9 N9 N 0 1 N N N -1.039 10.616 32.706 -7.961 2.196 -2.491 NH2 6 N polymer 1 1 35 ? ? ? PRD_001080 H1 H1 H 0 1 N N N 5.585 -0.262 37.549 7.937 2.186 1.480 MPT 1 HA1 polymer 1 1 36 ? ? ? PRD_001080 H2 H2 H 0 1 N N N 4.239 0.028 38.702 8.503 1.543 -0.081 MPT 1 HA2 polymer 1 1 37 ? ? ? PRD_001080 H3 H3 H 0 1 N N N 2.656 -0.976 37.043 8.244 3.788 -1.100 MPT 1 HB1 polymer 1 1 38 ? ? ? PRD_001080 H4 H4 H 0 1 N N N 4.055 -1.351 35.980 7.679 4.431 0.460 MPT 1 HB2 polymer 1 1 39 ? ? ? PRD_001080 H5 H5 H 0 1 N N N 3.364 -3.550 37.366 10.295 5.196 0.078 MPT 1 HG polymer 1 1 40 ? ? ? PRD_001080 H6 H6 H 0 1 N N N 7.054 2.799 35.970 4.672 -2.634 -0.010 DPP 2 H polymer 1 1 41 ? ? ? PRD_001080 H7 H7 H 0 1 N Y N 7.177 3.443 34.474 4.941 -1.659 -1.330 DPP 2 H2 polymer 1 1 42 ? ? ? PRD_001080 H8 H8 H 0 1 N N N 5.014 2.592 34.769 3.969 -0.780 1.311 DPP 2 HA polymer 1 1 43 ? ? ? PRD_001080 H9 H9 H 0 1 N N N 5.119 4.486 37.155 4.361 0.793 -1.273 DPP 2 HB2 polymer 1 1 44 ? ? ? PRD_001080 H10 H10 H 0 1 N N N 3.609 3.775 36.492 3.795 1.436 0.287 DPP 2 HB3 polymer 1 1 45 ? ? ? PRD_001080 H11 H11 H 0 1 N N N 5.704 2.342 37.972 6.300 0.196 0.691 DPP 2 HG2 polymer 1 1 46 ? ? ? PRD_001080 H12 H12 H 0 1 N N N 3.250 3.800 33.485 1.638 0.058 1.134 ARG 3 H polymer 1 1 47 ? ? ? PRD_001080 H13 H13 H 0 1 N N N 4.497 6.177 32.282 0.205 -0.738 -1.283 ARG 3 HA polymer 1 1 48 ? ? ? PRD_001080 H14 H14 H 0 1 N N N 3.436 5.469 30.495 -0.273 -2.086 1.412 ARG 3 HB2 polymer 1 1 49 ? ? ? PRD_001080 H15 H15 H 0 1 N N N 2.650 4.175 31.462 -1.360 -2.218 0.009 ARG 3 HB3 polymer 1 1 50 ? ? ? PRD_001080 H16 H16 H 0 1 N N N 0.781 5.513 31.944 0.490 -3.177 -1.335 ARG 3 HG2 polymer 1 1 51 ? ? ? PRD_001080 H17 H17 H 0 1 N N N 1.628 7.023 31.463 1.578 -3.044 0.068 ARG 3 HG3 polymer 1 1 52 ? ? ? PRD_001080 H18 H18 H 0 1 N N N 0.695 4.740 29.651 0.097 -4.556 1.359 ARG 3 HD2 polymer 1 1 53 ? ? ? PRD_001080 H19 H19 H 0 1 N N N 0.084 6.429 29.687 -0.991 -4.689 -0.044 ARG 3 HD3 polymer 1 1 54 ? ? ? PRD_001080 H20 H20 H 0 1 N N N 2.794 5.641 28.695 1.615 -5.402 -0.868 ARG 3 HE polymer 1 1 55 ? ? ? PRD_001080 H21 H21 H 0 0 N N N 2.368 8.468 26.403 -0.951 -6.499 1.225 ARG 3 HH11 polymer 1 1 56 ? ? ? PRD_001080 H22 H22 H 0 0 N N N 3.404 7.154 26.850 -0.583 -8.133 1.095 ARG 3 HH12 polymer 1 1 57 ? ? ? PRD_001080 H23 H23 H 0 0 N N N 0.406 8.791 27.518 2.112 -7.680 -1.038 ARG 3 HH21 polymer 1 1 58 ? ? ? PRD_001080 H24 H24 H 0 0 N N N -0.054 7.731 28.808 1.189 -8.816 -0.215 ARG 3 HH22 polymer 1 1 59 ? ? ? PRD_001080 H25 H25 H 0 1 N N N 1.688 5.527 34.730 -2.389 -0.373 -0.649 GLY 4 H polymer 1 1 60 ? ? ? PRD_001080 H26 H26 H 0 1 N N N 0.925 7.323 36.132 -2.987 1.425 1.445 GLY 4 HA2 polymer 1 1 61 ? ? ? PRD_001080 H27 H27 H 0 1 N N N 1.805 8.477 35.073 -2.600 2.371 -0.013 GLY 4 HA3 polymer 1 1 62 ? ? ? PRD_001080 H28 H28 H 0 1 N N N -0.852 9.383 35.686 -5.178 2.782 0.656 LEU 5 H polymer 1 1 63 ? ? ? PRD_001080 H29 H29 H 0 1 N N N -2.920 8.305 33.986 -6.876 0.675 -0.441 LEU 5 HA polymer 1 1 64 ? ? ? PRD_001080 H30 H30 H 0 1 N N N -2.501 11.074 35.228 -7.487 3.482 0.587 LEU 5 HB2 polymer 1 1 65 ? ? ? PRD_001080 H31 H31 H 0 1 N N N -4.016 10.517 34.440 -8.717 2.310 0.056 LEU 5 HB3 polymer 1 1 66 ? ? ? PRD_001080 H32 H32 H 0 1 N N N -2.723 8.876 36.630 -6.681 1.799 2.269 LEU 5 HG polymer 1 1 67 ? ? ? PRD_001080 H33 H33 H 0 0 N N N -4.118 10.111 38.244 -9.652 2.484 2.417 LEU 5 HD11 polymer 1 1 68 ? ? ? PRD_001080 H34 H34 H 0 0 N N N -2.899 11.174 37.463 -8.616 2.050 3.799 LEU 5 HD12 polymer 1 1 69 ? ? ? PRD_001080 H35 H35 H 0 0 N N N -4.615 11.240 36.938 -8.314 3.556 2.899 LEU 5 HD13 polymer 1 1 70 ? ? ? PRD_001080 H36 H36 H 0 0 N N N -5.065 8.193 36.940 -7.478 -0.227 1.082 LEU 5 HD21 polymer 1 1 71 ? ? ? PRD_001080 H37 H37 H 0 0 N N N -5.564 9.336 35.647 -8.128 -0.159 2.738 LEU 5 HD22 polymer 1 1 72 ? ? ? PRD_001080 H38 H38 H 0 0 N N N -4.514 7.934 35.250 -9.164 0.276 1.357 LEU 5 HD23 polymer 1 1 73 ? ? ? PRD_001080 H39 H39 H 0 1 N N N -0.927 11.168 31.880 -8.721 1.751 -2.085 NH2 6 HN1 polymer 1 1 74 ? ? ? PRD_001080 H40 H40 H 0 1 N N N -0.296 10.558 33.373 -8.034 2.558 -3.388 NH2 6 HN2 polymer 1 1 75 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_001080 C1 C2 SING N N 1 PRD_001080 C1 C3 SING N N 2 PRD_001080 C1 H1 SING N N 3 PRD_001080 C1 H2 SING N N 4 PRD_001080 C2 O1 DOUB N N 5 PRD_001080 C3 S1 SING N N 6 PRD_001080 C3 H3 SING N N 7 PRD_001080 C3 H4 SING N N 8 PRD_001080 S1 H5 SING N N 9 PRD_001080 N1 C4 SING N N 10 PRD_001080 N1 H6 SING N N 11 PRD_001080 N1 H7 SING N N 12 PRD_001080 C4 C5 SING N N 13 PRD_001080 C4 C6 SING N N 14 PRD_001080 C4 H8 SING N N 15 PRD_001080 C5 O2 DOUB N N 16 PRD_001080 C6 N2 SING N N 17 PRD_001080 C6 H9 SING N N 18 PRD_001080 C6 H10 SING N N 19 PRD_001080 N2 H11 SING N N 20 PRD_001080 N3 C7 SING N N 21 PRD_001080 N3 H12 SING N N 22 PRD_001080 C7 C8 SING N N 23 PRD_001080 C7 C9 SING N N 24 PRD_001080 C7 H13 SING N N 25 PRD_001080 C8 O3 DOUB N N 26 PRD_001080 C9 C10 SING N N 27 PRD_001080 C9 H14 SING N N 28 PRD_001080 C9 H15 SING N N 29 PRD_001080 C10 C11 SING N N 30 PRD_001080 C10 H16 SING N N 31 PRD_001080 C10 H17 SING N N 32 PRD_001080 C11 N4 SING N N 33 PRD_001080 C11 H18 SING N N 34 PRD_001080 C11 H19 SING N N 35 PRD_001080 N4 C12 SING N N 36 PRD_001080 N4 H20 SING N N 37 PRD_001080 C12 N5 SING N N 38 PRD_001080 C12 N6 DOUB N N 39 PRD_001080 N5 H21 SING N N 40 PRD_001080 N5 H22 SING N N 41 PRD_001080 N6 H23 SING N N 42 PRD_001080 N6 H24 SING N N 43 PRD_001080 N7 C13 SING N N 44 PRD_001080 N7 H25 SING N N 45 PRD_001080 C13 C14 SING N N 46 PRD_001080 C13 H26 SING N N 47 PRD_001080 C13 H27 SING N N 48 PRD_001080 C14 O4 DOUB N N 49 PRD_001080 N8 C15 SING N N 50 PRD_001080 N8 H28 SING N N 51 PRD_001080 C15 C16 SING N N 52 PRD_001080 C15 C17 SING N N 53 PRD_001080 C15 H29 SING N N 54 PRD_001080 C16 O5 DOUB N N 55 PRD_001080 C17 C18 SING N N 56 PRD_001080 C17 H30 SING N N 57 PRD_001080 C17 H31 SING N N 58 PRD_001080 C18 C19 SING N N 59 PRD_001080 C18 C20 SING N N 60 PRD_001080 C18 H32 SING N N 61 PRD_001080 C19 H33 SING N N 62 PRD_001080 C19 H34 SING N N 63 PRD_001080 C19 H35 SING N N 64 PRD_001080 C20 H36 SING N N 65 PRD_001080 C20 H37 SING N N 66 PRD_001080 C20 H38 SING N N 67 PRD_001080 N9 H39 SING N N 68 PRD_001080 N9 H40 SING N N 69 PRD_001080 C2 N2 SING N N 70 PRD_001080 C5 N3 SING N N 71 PRD_001080 C8 N7 SING N N 72 PRD_001080 C14 N8 SING N N 73 PRD_001080 C16 N9 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_001080 SMILES ACDLabs 12.01 "O=C(NCC(N)C(=O)NC(C(=O)NCC(=O)NC(C(=O)N)CC(C)C)CCCNC(=[NH2+])\N)CCS" PRD_001080 InChI InChI 1.03 "InChI=1S/C20H39N9O5S/c1-11(2)8-14(17(22)32)28-16(31)10-27-19(34)13(4-3-6-25-20(23)24)29-18(33)12(21)9-26-15(30)5-7-35/h11-14,35H,3-10,21H2,1-2H3,(H2,22,32)(H,26,30)(H,27,34)(H,28,31)(H,29,33)(H4,23,24,25)/p+1/t12-,13-,14-/m0/s1" PRD_001080 InChIKey InChI 1.03 VREFBLRHTPWEET-IHRRRGAJSA-O PRD_001080 SMILES_CANONICAL CACTVS 3.370 "CC(C)C[C@H](NC(=O)CNC(=O)[C@H](CCCNC(N)=[NH2+])NC(=O)[C@@H](N)CNC(=O)CCS)C(N)=O" PRD_001080 SMILES CACTVS 3.370 "CC(C)C[CH](NC(=O)CNC(=O)[CH](CCCNC(N)=[NH2+])NC(=O)[CH](N)CNC(=O)CCS)C(N)=O" PRD_001080 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)C[C@@H](C(=O)N)NC(=O)CNC(=O)[C@H](CCCNC(=[NH2+])N)NC(=O)[C@H](CNC(=O)CCS)N" PRD_001080 SMILES "OpenEye OEToolkits" 1.7.6 "CC(C)CC(C(=O)N)NC(=O)CNC(=O)C(CCCNC(=[NH2+])N)NC(=O)C(CNC(=O)CCS)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD_001080 "SYSTEMATIC NAME" ACDLabs 12.01 "3-[(3-sulfanylpropanoyl)amino]-L-alanyl-N~5~-[amino(iminio)methyl]-L-ornithylglycyl-L-leucinamide" PRD_001080 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[azanyl-[[(4S)-5-[[2-[[(2S)-1-azanyl-4-methyl-1-oxidanylidene-pentan-2-yl]amino]-2-oxidanylidene-ethyl]amino]-4-[[(2S)-2-azanyl-3-(3-sulfanylpropanoylamino)propanoyl]amino]-5-oxidanylidene-pentyl]amino]methylidene]azanium" #