data_PRDCC_001082 # _chem_comp.id PRD_001082 _chem_comp.name "Tripeptide fluoromethyl ketone inhibitor Z-VAE(OMe)-FMK" _chem_comp.formula "C23 H32 F N3 O7" _chem_comp.formula_weight 481.514 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_pcm ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_001082 C1 C1 C 0 1 N N N 54.052 16.677 9.876 4.500 -0.505 0.510 PHQ 1 C1 polymer 1 1 1 ? ? ? PRD_001082 O1 O1 O 0 1 N N N 52.898 16.624 9.125 4.541 -1.573 1.089 PHQ 1 O1 polymer 1 1 2 ? ? ? PRD_001082 O2 O2 O 0 1 N N N 55.214 16.872 9.169 5.624 0.018 -0.016 PHQ 1 O2 polymer 1 1 3 ? ? ? PRD_001082 C2 C2 C 0 1 N N N 55.261 17.929 8.278 6.846 -0.748 0.146 PHQ 1 C2 polymer 1 1 4 ? ? ? PRD_001082 C3 C3 C 0 1 Y N N 55.444 17.653 6.823 7.991 -0.012 -0.502 PHQ 1 C3 polymer 1 1 5 ? ? ? PRD_001082 C4 C4 C 0 1 Y N N 56.688 17.258 6.353 8.734 0.893 0.231 PHQ 1 C4 polymer 1 1 6 ? ? ? PRD_001082 C5 C5 C 0 1 Y N N 56.861 17.002 5.003 9.783 1.569 -0.363 PHQ 1 C5 polymer 1 1 7 ? ? ? PRD_001082 C6 C6 C 0 1 Y N N 55.795 17.147 4.127 10.090 1.338 -1.691 PHQ 1 C6 polymer 1 1 8 ? ? ? PRD_001082 C7 C7 C 0 1 Y N N 54.553 17.548 4.594 9.347 0.432 -2.425 PHQ 1 C7 polymer 1 1 9 ? ? ? PRD_001082 C8 C8 C 0 1 Y N N 54.376 17.803 5.945 8.300 -0.247 -1.829 PHQ 1 C8 polymer 1 1 10 ? ? ? PRD_001082 N1 N1 N 0 1 N N N 54.115 15.533 10.737 3.330 0.153 0.389 VAL 2 N polymer 1 1 11 ? ? ? PRD_001082 C9 C9 C 0 1 N N S 52.730 15.127 10.935 2.107 -0.419 0.957 VAL 2 CA polymer 1 1 12 ? ? ? PRD_001082 C10 C10 C 0 1 N N N 52.076 15.614 12.226 0.910 0.116 0.213 VAL 2 C polymer 1 1 13 ? ? ? PRD_001082 O3 O3 O 0 1 N N N 52.702 15.703 13.293 0.993 1.161 -0.396 VAL 2 O polymer 1 1 14 ? ? ? PRD_001082 C11 C11 C 0 1 N N N 52.536 13.605 10.763 2.002 -0.036 2.434 VAL 2 CB polymer 1 1 15 ? ? ? PRD_001082 C12 C12 C 0 1 N N N 53.305 13.134 9.569 3.142 -0.693 3.214 VAL 2 CG1 polymer 1 1 16 ? ? ? PRD_001082 C13 C13 C 0 1 N N N 52.985 12.836 12.011 2.099 1.485 2.574 VAL 2 CG2 polymer 1 1 17 ? ? ? PRD_001082 N2 N2 N 0 1 N N N 50.783 15.884 12.102 -0.251 -0.568 0.225 ALA 3 N polymer 1 1 18 ? ? ? PRD_001082 C14 C14 C 0 1 N N S 49.980 16.383 13.199 -1.382 -0.105 -0.584 ALA 3 CA polymer 1 1 19 ? ? ? PRD_001082 C15 C15 C 0 1 N N N 49.214 15.258 13.892 -2.670 -0.601 0.022 ALA 3 C polymer 1 1 20 ? ? ? PRD_001082 O4 O4 O 0 1 N N N 48.676 15.461 14.971 -2.645 -1.274 1.031 ALA 3 O polymer 1 1 21 ? ? ? PRD_001082 C16 C16 C 0 1 N N N 49.038 17.453 12.686 -1.247 -0.648 -2.008 ALA 3 CB polymer 1 1 22 ? ? ? PRD_001082 C17 C17 C 0 1 N N N 47.219 13.078 14.447 -5.383 -2.172 -0.461 GME 4 C polymer 1 1 23 ? ? ? PRD_001082 N3 N3 N 0 1 N N N 49.201 14.082 13.265 -3.848 -0.295 -0.556 GME 4 N polymer 1 1 24 ? ? ? PRD_001082 O5 O5 O 0 1 N N N 47.103 13.539 15.581 -4.786 -2.607 -1.416 GME 4 O polymer 1 1 25 ? ? ? PRD_001082 C18 C18 C 0 1 N N S 48.546 12.849 13.767 -5.100 -0.777 0.033 GME 4 CA polymer 1 1 26 ? ? ? PRD_001082 C19 C19 C 0 1 N N N 49.476 11.924 14.523 -6.246 0.151 -0.374 GME 4 CB polymer 1 1 27 ? ? ? PRD_001082 C20 C20 C 0 1 N N N 47.947 10.173 15.846 -7.149 2.451 -0.169 GME 4 CD polymer 1 1 28 ? ? ? PRD_001082 C21 C21 C 0 1 N N N 49.077 11.203 15.828 -6.020 1.537 0.233 GME 4 CG polymer 1 1 29 ? ? ? PRD_001082 C22 C22 C 0 1 N N N 46.045 9.323 14.694 -8.280 4.549 -0.174 GME 4 CX polymer 1 1 30 ? ? ? PRD_001082 O6 O6 O 0 1 N N N 47.500 9.783 16.907 -8.042 2.037 -0.868 GME 4 OE1 polymer 1 1 31 ? ? ? PRD_001082 O7 O7 O 0 1 N N N 47.322 9.834 14.671 -7.161 3.726 0.251 GME 4 OE2 polymer 1 1 32 ? ? ? PRD_001082 C23 C23 C 0 1 N N N 46.241 12.542 13.388 -6.411 -3.024 0.237 CF0 5 C1 polymer 1 1 33 ? ? ? PRD_001082 F1 F1 F 0 1 N Y N ? ? ? -6.497 -4.268 -0.399 CF0 5 F1 polymer 1 1 34 ? ? ? PRD_001082 H1 H1 H 0 1 N N N 54.314 18.479 8.383 7.054 -0.880 1.208 PHQ 1 H21 polymer 1 1 35 ? ? ? PRD_001082 H2 H2 H 0 1 N N N 56.096 18.574 8.589 6.729 -1.724 -0.325 PHQ 1 H22 polymer 1 1 36 ? ? ? PRD_001082 H3 H3 H 0 1 N N N 57.517 17.151 7.036 8.495 1.073 1.269 PHQ 1 H41 polymer 1 1 37 ? ? ? PRD_001082 H4 H4 H 0 1 N N N 57.826 16.689 4.632 10.364 2.277 0.210 PHQ 1 H51 polymer 1 1 38 ? ? ? PRD_001082 H5 H5 H 0 1 N N N 55.934 16.946 3.075 10.909 1.866 -2.156 PHQ 1 H61 polymer 1 1 39 ? ? ? PRD_001082 H6 H6 H 0 1 N N N 53.727 17.661 3.908 9.586 0.252 -3.462 PHQ 1 H71 polymer 1 1 40 ? ? ? PRD_001082 H7 H7 H 0 1 N N N 53.411 18.117 6.315 7.722 -0.957 -2.401 PHQ 1 H81 polymer 1 1 41 ? ? ? PRD_001082 H8 H8 H 0 1 N N N 54.934 15.105 11.120 3.298 1.005 -0.073 VAL 2 H polymer 1 1 42 ? ? ? PRD_001082 H9 H9 H 0 1 N N N 52.153 15.588 10.120 2.136 -1.505 0.865 VAL 2 HA polymer 1 1 43 ? ? ? PRD_001082 H10 H10 H 0 1 N N N 51.466 13.409 10.599 1.046 -0.377 2.831 VAL 2 HB polymer 1 1 44 ? ? ? PRD_001082 H11 H11 H 0 0 N N N 53.166 12.050 9.447 4.098 -0.352 2.817 VAL 2 HG11 polymer 1 1 45 ? ? ? PRD_001082 H12 H12 H 0 0 N N N 52.941 13.653 8.670 3.067 -0.420 4.267 VAL 2 HG12 polymer 1 1 46 ? ? ? PRD_001082 H13 H13 H 0 0 N N N 54.374 13.353 9.711 3.073 -1.777 3.114 VAL 2 HG13 polymer 1 1 47 ? ? ? PRD_001082 H14 H14 H 0 0 N N N 52.833 11.758 11.853 3.015 1.836 2.100 VAL 2 HG21 polymer 1 1 48 ? ? ? PRD_001082 H15 H15 H 0 0 N N N 54.051 13.032 12.198 1.239 1.950 2.092 VAL 2 HG22 polymer 1 1 49 ? ? ? PRD_001082 H16 H16 H 0 0 N N N 52.394 13.166 12.878 2.112 1.752 3.631 VAL 2 HG23 polymer 1 1 50 ? ? ? PRD_001082 H17 H17 H 0 1 N N N 50.345 15.737 11.215 -0.339 -1.366 0.769 ALA 3 H polymer 1 1 51 ? ? ? PRD_001082 H18 H18 H 0 1 N N N 50.645 16.845 13.943 -1.388 0.985 -0.610 ALA 3 HA polymer 1 1 52 ? ? ? PRD_001082 H19 H19 H 0 1 N N N 48.427 17.834 13.518 -1.240 -1.738 -1.982 ALA 3 HB1 polymer 1 1 53 ? ? ? PRD_001082 H20 H20 H 0 1 N N N 49.622 18.278 12.253 -2.088 -0.303 -2.610 ALA 3 HB2 polymer 1 1 54 ? ? ? PRD_001082 H21 H21 H 0 1 N N N 48.381 17.024 11.915 -0.315 -0.289 -2.447 ALA 3 HB3 polymer 1 1 55 ? ? ? PRD_001082 H22 H22 H 0 1 N N N 49.671 14.026 12.384 -3.867 0.243 -1.362 GME 4 H polymer 1 1 56 ? ? ? PRD_001082 H23 H23 H 0 1 N N N 48.289 12.286 12.858 -5.010 -0.788 1.120 GME 4 HA polymer 1 1 57 ? ? ? PRD_001082 H24 H24 H 0 1 N N N 50.364 12.525 14.770 -6.280 0.231 -1.461 GME 4 H1B polymer 1 1 58 ? ? ? PRD_001082 H25 H25 H 0 1 N N N 49.755 11.131 13.814 -7.189 -0.255 -0.010 GME 4 H2B polymer 1 1 59 ? ? ? PRD_001082 H26 H26 H 0 1 N N N 49.978 10.684 16.187 -5.986 1.457 1.319 GME 4 H1G polymer 1 1 60 ? ? ? PRD_001082 H27 H27 H 0 1 N N N 48.796 11.988 16.545 -5.076 1.944 -0.131 GME 4 H2G polymer 1 1 61 ? ? ? PRD_001082 H28 H28 H 0 1 N N N 45.715 9.113 13.666 -8.167 5.554 0.233 GME 4 H1X polymer 1 1 62 ? ? ? PRD_001082 H29 H29 H 0 1 N N N 46.033 8.392 15.280 -8.300 4.599 -1.263 GME 4 H2X polymer 1 1 63 ? ? ? PRD_001082 H30 H30 H 0 1 N N N 45.366 10.055 15.155 -9.210 4.112 0.187 GME 4 H3X polymer 1 1 64 ? ? ? PRD_001082 H31 H31 H 0 1 N N N 46.741 11.587 13.169 -6.119 -3.168 1.277 CF0 5 H1 polymer 1 1 65 ? ? ? PRD_001082 H32 H32 H 0 1 N N N 46.456 13.262 12.585 -7.382 -2.529 0.198 CF0 5 H2 polymer 1 1 66 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_001082 C1 O1 DOUB N N 1 PRD_001082 C1 O2 SING N N 2 PRD_001082 O2 C2 SING N N 3 PRD_001082 C2 C3 SING N N 4 PRD_001082 C2 H1 SING N N 5 PRD_001082 C2 H2 SING N N 6 PRD_001082 C3 C4 DOUB Y N 7 PRD_001082 C3 C8 SING Y N 8 PRD_001082 C4 C5 SING Y N 9 PRD_001082 C4 H3 SING N N 10 PRD_001082 C5 C6 DOUB Y N 11 PRD_001082 C5 H4 SING N N 12 PRD_001082 C6 C7 SING Y N 13 PRD_001082 C6 H5 SING N N 14 PRD_001082 C7 C8 DOUB Y N 15 PRD_001082 C7 H6 SING N N 16 PRD_001082 C8 H7 SING N N 17 PRD_001082 N1 C9 SING N N 18 PRD_001082 N1 H8 SING N N 19 PRD_001082 C9 C10 SING N N 20 PRD_001082 C9 C11 SING N N 21 PRD_001082 C9 H9 SING N N 22 PRD_001082 C10 O3 DOUB N N 23 PRD_001082 C11 C12 SING N N 24 PRD_001082 C11 C13 SING N N 25 PRD_001082 C11 H10 SING N N 26 PRD_001082 C12 H11 SING N N 27 PRD_001082 C12 H12 SING N N 28 PRD_001082 C12 H13 SING N N 29 PRD_001082 C13 H14 SING N N 30 PRD_001082 C13 H15 SING N N 31 PRD_001082 C13 H16 SING N N 32 PRD_001082 N2 C14 SING N N 33 PRD_001082 N2 H17 SING N N 34 PRD_001082 C14 C15 SING N N 35 PRD_001082 C14 C16 SING N N 36 PRD_001082 C14 H18 SING N N 37 PRD_001082 C15 O4 DOUB N N 38 PRD_001082 C16 H19 SING N N 39 PRD_001082 C16 H20 SING N N 40 PRD_001082 C16 H21 SING N N 41 PRD_001082 C17 O5 DOUB N N 42 PRD_001082 N3 H22 SING N N 43 PRD_001082 N3 C18 SING N N 44 PRD_001082 C18 C17 SING N N 45 PRD_001082 C18 C19 SING N N 46 PRD_001082 C19 H25 SING N N 47 PRD_001082 C19 C21 SING N N 48 PRD_001082 C20 O7 SING N N 49 PRD_001082 C21 C20 SING N N 50 PRD_001082 C21 H26 SING N N 51 PRD_001082 C22 O7 SING N N 52 PRD_001082 C22 H28 SING N N 53 PRD_001082 O6 C20 DOUB N N 54 PRD_001082 H23 C18 SING N N 55 PRD_001082 H24 C19 SING N N 56 PRD_001082 H27 C21 SING N N 57 PRD_001082 H29 C22 SING N N 58 PRD_001082 H30 C22 SING N N 59 PRD_001082 C23 F1 SING N N 60 PRD_001082 C23 H31 SING N N 61 PRD_001082 C23 H32 SING N N 62 PRD_001082 C1 N1 SING N N 63 PRD_001082 C10 N2 SING N N 64 PRD_001082 C15 N3 SING N N 65 PRD_001082 C17 C23 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_001082 SMILES ACDLabs 12.01 "FCC(=O)C(NC(=O)C(NC(=O)C(NC(=O)OCc1ccccc1)C(C)C)C)CCC(=O)OC" PRD_001082 InChI InChI 1.03 "InChI=1S/C23H32FN3O7/c1-14(2)20(27-23(32)34-13-16-8-6-5-7-9-16)22(31)25-15(3)21(30)26-17(18(28)12-24)10-11-19(29)33-4/h5-9,14-15,17,20H,10-13H2,1-4H3,(H,25,31)(H,26,30)(H,27,32)" PRD_001082 InChIKey InChI 1.03 VBAAQBLMAIONMC-UHFFFAOYSA-N PRD_001082 SMILES_CANONICAL CACTVS 3.370 "COC(=O)CC[C@H](NC(=O)[C@H](C)NC(=O)[C@@H](NC(=O)OCc1ccccc1)C(C)C)C(=O)CF" PRD_001082 SMILES CACTVS 3.370 "COC(=O)CC[CH](NC(=O)[CH](C)NC(=O)[CH](NC(=O)OCc1ccccc1)C(C)C)C(=O)CF" PRD_001082 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@H](C(=O)N[C@@H](CCC(=O)OC)C(=O)CF)NC(=O)[C@H](C(C)C)NC(=O)OCc1ccccc1" PRD_001082 SMILES "OpenEye OEToolkits" 1.7.6 "CC(C)C(C(=O)NC(C)C(=O)NC(CCC(=O)OC)C(=O)CF)NC(=O)OCc1ccccc1" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD_001082 "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(benzyloxy)carbonyl]-L-valyl-N-[(3S)-1-fluoro-6-methoxy-2,6-dioxohexan-3-yl]-L-alaninamide" PRD_001082 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "methyl (4S)-6-fluoranyl-4-[[(2S)-2-[[(2S)-3-methyl-2-(phenylmethoxycarbonylamino)butanoyl]amino]propanoyl]amino]-5-oxidanylidene-hexanoate" #