data_PRDCC_001117 # _chem_comp.id PRD_001117 _chem_comp.name "Peptide aldehyde inhibitor Ac-NSFSQ-H" _chem_comp.formula "C26 H39 N7 O10" _chem_comp.formula_weight 609.629 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_pcm ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_001117 C1 C1 C 0 1 N N N 21.466 10.707 22.999 8.354 -2.277 -0.281 ACE 1 C polymer 1 1 1 ? ? ? PRD_001117 O1 O1 O 0 1 N N N 20.505 11.054 23.685 7.969 -2.814 0.736 ACE 1 O polymer 1 1 2 ? ? ? PRD_001117 C2 C2 C 0 1 N N N 22.505 11.702 22.531 9.391 -2.951 -1.142 ACE 1 CH3 polymer 1 1 3 ? ? ? PRD_001117 N1 N1 N 0 1 N N N 21.638 9.418 22.666 7.849 -1.082 -0.645 ASN 2 N polymer 1 1 4 ? ? ? PRD_001117 C3 C3 C 0 1 N N S 21.318 8.906 21.326 6.761 -0.480 0.129 ASN 2 CA polymer 1 1 5 ? ? ? PRD_001117 C4 C4 C 0 1 N N N 20.828 7.447 21.280 5.447 -1.082 -0.299 ASN 2 C polymer 1 1 6 ? ? ? PRD_001117 O2 O2 O 0 1 N N N 21.460 6.564 21.875 5.423 -1.930 -1.165 ASN 2 O polymer 1 1 7 ? ? ? PRD_001117 C5 C5 C 0 1 N N N 22.517 9.082 20.394 6.734 1.030 -0.117 ASN 2 CB polymer 1 1 8 ? ? ? PRD_001117 C6 C6 C 0 1 N N N 22.121 9.658 19.071 7.990 1.652 0.436 ASN 2 CG polymer 1 1 9 ? ? ? PRD_001117 O3 O3 O 0 1 N N N 21.872 10.861 18.948 8.777 0.974 1.063 ASN 2 OD1 polymer 1 1 10 ? ? ? PRD_001117 N2 N2 N 0 1 N N N 22.036 8.803 18.070 8.240 2.961 0.235 ASN 2 ND2 polymer 1 1 11 ? ? ? PRD_001117 N3 N3 N 0 1 N N N 19.717 7.223 20.557 4.300 -0.678 0.281 SER 3 N polymer 1 1 12 ? ? ? PRD_001117 C7 C7 C 0 1 N N S 19.013 5.921 20.427 3.023 -1.263 -0.135 SER 3 CA polymer 1 1 13 ? ? ? PRD_001117 C8 C8 C 0 1 N N N 18.832 5.125 21.754 1.907 -0.293 0.157 SER 3 C polymer 1 1 14 ? ? ? PRD_001117 O4 O4 O 0 1 N N N 19.189 5.633 22.827 2.154 0.782 0.662 SER 3 O polymer 1 1 15 ? ? ? PRD_001117 C9 C9 C 0 1 N N N 19.641 5.072 19.316 2.783 -2.563 0.636 SER 3 CB polymer 1 1 16 ? ? ? PRD_001117 O5 O5 O 0 1 N N N 18.840 3.932 19.082 2.630 -2.271 2.026 SER 3 OG polymer 1 1 17 ? ? ? PRD_001117 N4 N4 N 0 1 N N N 18.250 3.913 21.672 0.635 -0.619 -0.145 PHE 4 N polymer 1 1 18 ? ? ? PRD_001117 C10 C10 C 0 1 N N S 18.023 2.971 22.829 -0.450 0.324 0.139 PHE 4 CA polymer 1 1 19 ? ? ? PRD_001117 C11 C11 C 0 1 N N N 17.540 1.572 22.352 -1.743 -0.433 0.306 PHE 4 C polymer 1 1 20 ? ? ? PRD_001117 O6 O6 O 0 1 N N N 16.325 1.302 22.312 -1.757 -1.641 0.199 PHE 4 O polymer 1 1 21 ? ? ? PRD_001117 C12 C12 C 0 1 N N N 16.994 3.511 23.859 -0.584 1.311 -1.023 PHE 4 CB polymer 1 1 22 ? ? ? PRD_001117 C13 C13 C 0 1 Y N N 17.589 4.289 25.004 0.663 2.153 -1.112 PHE 4 CG polymer 1 1 23 ? ? ? PRD_001117 C14 C14 C 0 1 Y N N 17.451 5.682 25.061 1.725 1.735 -1.893 PHE 4 CD1 polymer 1 1 24 ? ? ? PRD_001117 C15 C15 C 0 1 Y N N 18.245 3.635 26.044 0.743 3.345 -0.418 PHE 4 CD2 polymer 1 1 25 ? ? ? PRD_001117 C16 C16 C 0 1 Y N N 17.994 6.420 26.119 2.868 2.507 -1.975 PHE 4 CE1 polymer 1 1 26 ? ? ? PRD_001117 C17 C17 C 0 1 Y N N 18.791 4.363 27.121 1.887 4.117 -0.500 PHE 4 CE2 polymer 1 1 27 ? ? ? PRD_001117 C18 C18 C 0 1 Y N N 18.665 5.759 27.157 2.951 3.697 -1.276 PHE 4 CZ polymer 1 1 28 ? ? ? PRD_001117 N5 N5 N 0 1 N N N 18.477 0.687 21.999 -2.884 0.233 0.574 SER 5 N polymer 1 1 29 ? ? ? PRD_001117 C19 C19 C 0 1 N N S 18.116 -0.651 21.502 -4.140 -0.503 0.736 SER 5 CA polymer 1 1 30 ? ? ? PRD_001117 C20 C20 C 0 1 N N N 17.612 -1.589 22.612 -5.299 0.406 0.417 SER 5 C polymer 1 1 31 ? ? ? PRD_001117 O7 O7 O 0 1 N N N 18.393 -2.074 23.437 -5.095 1.555 0.086 SER 5 O polymer 1 1 32 ? ? ? PRD_001117 C21 C21 C 0 1 N N N 19.273 -1.286 20.711 -4.260 -0.994 2.180 SER 5 CB polymer 1 1 33 ? ? ? PRD_001117 O8 O8 O 0 1 N N N 19.233 -0.946 19.327 -4.363 0.128 3.058 SER 5 OG polymer 1 1 34 ? ? ? PRD_001117 C22 C22 C 0 1 N N N 14.944 -3.515 23.957 -8.061 1.634 1.433 ECC 6 C polymer 1 1 35 ? ? ? PRD_001117 N6 N6 N 0 1 N N N 16.453 -1.830 23.076 -6.562 -0.058 0.499 ECC 6 N polymer 1 1 36 ? ? ? PRD_001117 O9 O9 O 0 1 N N N 14.344 -3.963 25.176 -8.541 0.751 2.448 ECC 6 O polymer 1 1 37 ? ? ? PRD_001117 C23 C23 C 0 1 N N S 15.415 -2.068 24.076 -7.688 0.826 0.188 ECC 6 CA polymer 1 1 38 ? ? ? PRD_001117 C24 C24 C 0 1 N N N 14.257 -1.092 23.848 -8.889 -0.014 -0.252 ECC 6 CB polymer 1 1 39 ? ? ? PRD_001117 C25 C25 C 0 1 N N N 12.791 0.605 24.949 -9.741 -1.553 -2.000 ECC 6 CD polymer 1 1 40 ? ? ? PRD_001117 C26 C26 C 0 1 N N N 14.168 -0.016 24.928 -8.559 -0.726 -1.566 ECC 6 CG polymer 1 1 41 ? ? ? PRD_001117 O10 O10 O 0 1 N N N 12.197 0.816 23.913 -10.749 -1.572 -1.325 ECC 6 OE1 polymer 1 1 42 ? ? ? PRD_001117 N7 N7 N 0 1 N N N 12.273 0.911 26.130 -9.679 -2.273 -3.138 ECC 6 NE2 polymer 1 1 43 ? ? ? PRD_001117 H1 H1 H 0 1 N N N 22.244 12.705 22.899 9.673 -3.903 -0.693 ACE 1 H1 polymer 1 1 44 ? ? ? PRD_001117 H2 H2 H 0 1 N N N 23.492 11.413 22.922 8.981 -3.126 -2.136 ACE 1 H2 polymer 1 1 45 ? ? ? PRD_001117 H3 H3 H 0 1 N N N 22.535 11.711 21.431 10.270 -2.311 -1.219 ACE 1 H3 polymer 1 1 46 ? ? ? PRD_001117 H4 H4 H 0 1 N N N 21.996 8.785 23.353 8.207 -0.620 -1.419 ASN 2 H polymer 1 1 47 ? ? ? PRD_001117 H5 H5 H 0 1 N N N 20.505 9.526 20.920 6.920 -0.672 1.190 ASN 2 HA polymer 1 1 48 ? ? ? PRD_001117 H6 H6 H 0 1 N N N 23.242 9.757 20.872 6.675 1.222 -1.188 ASN 2 HB2 polymer 1 1 49 ? ? ? PRD_001117 H7 H7 H 0 1 N N N 22.984 8.100 20.228 5.865 1.464 0.378 ASN 2 HB3 polymer 1 1 50 ? ? ? PRD_001117 H8 H8 H 0 0 N N N 21.760 9.121 17.163 7.610 3.503 -0.266 ASN 2 HD21 polymer 1 1 51 ? ? ? PRD_001117 H9 H9 H 0 0 N N N 22.248 7.837 18.218 9.048 3.361 0.591 ASN 2 HD22 polymer 1 1 52 ? ? ? PRD_001117 H10 H10 H 0 1 N N N 19.330 8.002 20.063 4.319 0.001 0.974 SER 3 H polymer 1 1 53 ? ? ? PRD_001117 H11 H11 H 0 1 N N N 17.994 6.155 20.084 3.051 -1.474 -1.204 SER 3 HA polymer 1 1 54 ? ? ? PRD_001117 H12 H12 H 0 1 N N N 19.709 5.668 18.394 1.878 -3.044 0.264 SER 3 HB2 polymer 1 1 55 ? ? ? PRD_001117 H13 H13 H 0 1 N N N 20.649 4.755 19.623 3.633 -3.230 0.496 SER 3 HB3 polymer 1 1 56 ? ? ? PRD_001117 H14 H14 H 0 1 N N N 19.230 3.406 18.393 2.474 -3.050 2.577 SER 3 HG polymer 1 1 57 ? ? ? PRD_001117 H15 H15 H 0 1 N N N 17.943 3.612 20.769 0.437 -1.479 -0.549 PHE 4 H polymer 1 1 58 ? ? ? PRD_001117 H16 H16 H 0 1 N N N 18.980 2.833 23.353 -0.227 0.869 1.056 PHE 4 HA polymer 1 1 59 ? ? ? PRD_001117 H17 H17 H 0 1 N N N 16.292 4.170 23.327 -0.718 0.761 -1.954 PHE 4 HB2 polymer 1 1 60 ? ? ? PRD_001117 H18 H18 H 0 1 N N N 16.447 2.653 24.277 -1.446 1.956 -0.854 PHE 4 HB3 polymer 1 1 61 ? ? ? PRD_001117 H19 H19 H 0 1 N N N 16.917 6.195 24.275 1.661 0.805 -2.438 PHE 4 HD1 polymer 1 1 62 ? ? ? PRD_001117 H20 H20 H 0 1 N N N 18.336 2.559 26.025 -0.088 3.674 0.189 PHE 4 HD2 polymer 1 1 63 ? ? ? PRD_001117 H21 H21 H 0 1 N N N 17.896 7.495 26.136 3.698 2.180 -2.584 PHE 4 HE1 polymer 1 1 64 ? ? ? PRD_001117 H22 H22 H 0 1 N N N 19.306 3.846 27.917 1.949 5.049 0.042 PHE 4 HE2 polymer 1 1 65 ? ? ? PRD_001117 H23 H23 H 0 1 N N N 19.082 6.321 27.979 3.844 4.300 -1.340 PHE 4 HZ polymer 1 1 66 ? ? ? PRD_001117 H24 H24 H 0 1 N N N 19.442 0.938 22.074 -2.873 1.199 0.659 SER 5 H polymer 1 1 67 ? ? ? PRD_001117 H25 H25 H 0 1 N N N 17.283 -0.525 20.794 -4.151 -1.357 0.059 SER 5 HA polymer 1 1 68 ? ? ? PRD_001117 H26 H26 H 0 1 N N N 20.226 -0.935 21.134 -5.150 -1.616 2.279 SER 5 HB2 polymer 1 1 69 ? ? ? PRD_001117 H27 H27 H 0 1 N N N 19.210 -2.380 20.809 -3.378 -1.579 2.439 SER 5 HB3 polymer 1 1 70 ? ? ? PRD_001117 H28 H28 H 0 1 N N N 19.962 -1.357 18.878 -4.442 -0.109 3.992 SER 5 HG polymer 1 1 71 ? ? ? PRD_001117 H29 H29 H 0 1 N Y N 14.205 -3.587 23.145 -8.839 2.354 1.179 ECC 6 H1 polymer 1 1 72 ? ? ? PRD_001117 H30 H30 H 0 1 N N N 15.807 -4.156 23.725 -7.181 2.164 1.799 ECC 6 HAA polymer 1 1 73 ? ? ? PRD_001117 H31 H31 H 0 1 N N N 15.922 -1.900 22.232 -6.725 -0.977 0.763 ECC 6 H polymer 1 1 74 ? ? ? PRD_001117 H32 H32 H 0 1 N N N 14.060 -4.864 25.077 -8.797 1.196 3.268 ECC 6 HO polymer 1 1 75 ? ? ? PRD_001117 H33 H33 H 0 1 N N N 15.824 -1.907 25.084 -7.406 1.506 -0.615 ECC 6 HA polymer 1 1 76 ? ? ? PRD_001117 H34 H34 H 0 1 N N N 14.398 -0.601 22.874 -9.116 -0.754 0.515 ECC 6 HB polymer 1 1 77 ? ? ? PRD_001117 H35 H35 H 0 1 N N N 13.315 -1.660 23.840 -9.752 0.635 -0.398 ECC 6 HBA polymer 1 1 78 ? ? ? PRD_001117 H36 H36 H 0 1 N N N 14.375 -0.470 25.908 -8.332 0.014 -2.333 ECC 6 HG polymer 1 1 79 ? ? ? PRD_001117 H37 H37 H 0 1 N N N 14.914 0.766 24.722 -7.695 -1.375 -1.420 ECC 6 HGA polymer 1 1 80 ? ? ? PRD_001117 H38 H38 H 0 0 N N N 11.366 1.329 26.185 -8.873 -2.258 -3.677 ECC 6 HNE2 polymer 1 1 81 ? ? ? PRD_001117 H39 H39 H 0 0 N N N 12.789 0.724 26.966 -10.440 -2.805 -3.417 ECC 6 HNEA polymer 1 1 82 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_001117 C1 O1 DOUB N N 1 PRD_001117 C1 C2 SING N N 2 PRD_001117 C2 H1 SING N N 3 PRD_001117 C2 H2 SING N N 4 PRD_001117 C2 H3 SING N N 5 PRD_001117 N1 C3 SING N N 6 PRD_001117 N1 H4 SING N N 7 PRD_001117 C3 C4 SING N N 8 PRD_001117 C3 C5 SING N N 9 PRD_001117 C3 H5 SING N N 10 PRD_001117 C4 O2 DOUB N N 11 PRD_001117 C5 C6 SING N N 12 PRD_001117 C5 H6 SING N N 13 PRD_001117 C5 H7 SING N N 14 PRD_001117 C6 O3 DOUB N N 15 PRD_001117 C6 N2 SING N N 16 PRD_001117 N2 H8 SING N N 17 PRD_001117 N2 H9 SING N N 18 PRD_001117 N3 C7 SING N N 19 PRD_001117 N3 H10 SING N N 20 PRD_001117 C7 C8 SING N N 21 PRD_001117 C7 C9 SING N N 22 PRD_001117 C7 H11 SING N N 23 PRD_001117 C8 O4 DOUB N N 24 PRD_001117 C9 O5 SING N N 25 PRD_001117 C9 H12 SING N N 26 PRD_001117 C9 H13 SING N N 27 PRD_001117 O5 H14 SING N N 28 PRD_001117 N4 C10 SING N N 29 PRD_001117 N4 H15 SING N N 30 PRD_001117 C10 C11 SING N N 31 PRD_001117 C10 C12 SING N N 32 PRD_001117 C10 H16 SING N N 33 PRD_001117 C11 O6 DOUB N N 34 PRD_001117 C12 C13 SING N N 35 PRD_001117 C12 H17 SING N N 36 PRD_001117 C12 H18 SING N N 37 PRD_001117 C13 C14 DOUB Y N 38 PRD_001117 C13 C15 SING Y N 39 PRD_001117 C14 C16 SING Y N 40 PRD_001117 C14 H19 SING N N 41 PRD_001117 C15 C17 DOUB Y N 42 PRD_001117 C15 H20 SING N N 43 PRD_001117 C16 C18 DOUB Y N 44 PRD_001117 C16 H21 SING N N 45 PRD_001117 C17 C18 SING Y N 46 PRD_001117 C17 H22 SING N N 47 PRD_001117 C18 H23 SING N N 48 PRD_001117 N5 C19 SING N N 49 PRD_001117 N5 H24 SING N N 50 PRD_001117 C19 C20 SING N N 51 PRD_001117 C19 C21 SING N N 52 PRD_001117 C19 H25 SING N N 53 PRD_001117 C20 O7 DOUB N N 54 PRD_001117 C21 O8 SING N N 55 PRD_001117 C21 H26 SING N N 56 PRD_001117 C21 H27 SING N N 57 PRD_001117 O8 H28 SING N N 58 PRD_001117 C22 C23 SING N N 59 PRD_001117 C22 O9 SING N N 60 PRD_001117 C22 H29 SING N N 61 PRD_001117 C22 H30 SING N N 62 PRD_001117 N6 C23 SING N N 63 PRD_001117 N6 H31 SING N N 64 PRD_001117 O9 H32 SING N N 65 PRD_001117 C24 C23 SING N N 66 PRD_001117 C23 H33 SING N N 67 PRD_001117 C24 C26 SING N N 68 PRD_001117 C24 H34 SING N N 69 PRD_001117 C24 H35 SING N N 70 PRD_001117 O10 C25 DOUB N N 71 PRD_001117 C26 C25 SING N N 72 PRD_001117 C25 N7 SING N N 73 PRD_001117 C26 H36 SING N N 74 PRD_001117 C26 H37 SING N N 75 PRD_001117 N7 H38 SING N N 76 PRD_001117 N7 H39 SING N N 77 PRD_001117 C1 N1 SING N N 78 PRD_001117 C4 N3 SING N N 79 PRD_001117 C8 N4 SING N N 80 PRD_001117 C11 N5 SING N N 81 PRD_001117 C20 N6 SING N N 82 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_001117 SMILES ACDLabs 12.01 "O=C(N)CCC(NC(=O)C(NC(=O)C(NC(=O)C(NC(=O)C(NC(=O)C)CC(=O)N)CO)Cc1ccccc1)CO)CO" PRD_001117 InChI InChI 1.03 "InChI=1S/C26H39N7O10/c1-14(37)29-18(10-22(28)39)24(41)33-20(13-36)26(43)31-17(9-15-5-3-2-4-6-15)23(40)32-19(12-35)25(42)30-16(11-34)7-8-21(27)38/h2-6,16-20,34-36H,7-13H2,1H3,(H2,27,38)(H2,28,39)(H,29,37)(H,30,42)(H,31,43)(H,32,40)(H,33,41)/t16-,17-,18+,19+,20+/m1/s1" PRD_001117 InChIKey InChI 1.03 LWVNNXRFRKURJV-SLHNCBLASA-N PRD_001117 SMILES_CANONICAL CACTVS 3.370 "CC(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CO)C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](CO)C(=O)N[C@H](CO)CCC(N)=O" PRD_001117 SMILES CACTVS 3.370 "CC(=O)N[CH](CC(N)=O)C(=O)N[CH](CO)C(=O)N[CH](Cc1ccccc1)C(=O)N[CH](CO)C(=O)N[CH](CO)CCC(N)=O" PRD_001117 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(=O)N[C@@H](CC(=O)N)C(=O)N[C@@H](CO)C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](CO)C(=O)N[C@@H](CCC(=O)N)CO" PRD_001117 SMILES "OpenEye OEToolkits" 1.7.6 "CC(=O)NC(CC(=O)N)C(=O)NC(CO)C(=O)NC(Cc1ccccc1)C(=O)NC(CO)C(=O)NC(CCC(=O)N)CO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD_001117 "SYSTEMATIC NAME" ACDLabs 12.01 "N~2~-acetyl-L-asparaginyl-L-seryl-L-phenylalanyl-N-[(2R)-5-amino-1-hydroxy-5-oxopentan-2-yl]-L-serinamide" PRD_001117 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-acetamido-N-[(2S)-1-[[(2S)-1-[[(2S)-1-[[(2S)-5-azanyl-1-oxidanyl-5-oxidanylidene-pentan-2-yl]amino]-3-oxidanyl-1-oxidanylidene-propan-2-yl]amino]-1-oxidanylidene-3-phenyl-propan-2-yl]amino]-3-oxidanyl-1-oxidanylidene-propan-2-yl]butanediamide" #