data_PRDCC_001135 # _chem_comp.id PRD_001135 _chem_comp.name "(CBZ)NPQ(B27) peptide" _chem_comp.formula "C26 H38 N6 O8 S" _chem_comp.formula_weight 594.680 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_001135 C1 C1 C 0 1 N N N 37.080 -19.709 33.646 5.096 -1.047 -0.025 PHQ 1 C1 polymer 1 1 1 ? ? ? PRD_001135 O1 O1 O 0 1 N N N 37.402 -21.001 33.737 5.510 -2.190 -0.003 PHQ 1 O1 polymer 1 1 2 ? ? ? PRD_001135 O2 O2 O 0 1 N N N 36.859 -19.187 32.558 5.960 -0.021 -0.141 PHQ 1 O2 polymer 1 1 3 ? ? ? PRD_001135 C2 C2 C 0 1 N N N ? ? ? 7.370 -0.354 -0.236 PHQ 1 C2 polymer 1 1 4 ? ? ? PRD_001135 C3 C3 C 0 1 Y N N ? ? ? 8.178 0.912 -0.360 PHQ 1 C3 polymer 1 1 5 ? ? ? PRD_001135 C4 C4 C 0 1 Y N N ? ? ? 8.642 1.550 0.775 PHQ 1 C4 polymer 1 1 6 ? ? ? PRD_001135 C5 C5 C 0 1 Y N N ? ? ? 9.383 2.711 0.662 PHQ 1 C5 polymer 1 1 7 ? ? ? PRD_001135 C6 C6 C 0 1 Y N N ? ? ? 9.660 3.235 -0.587 PHQ 1 C6 polymer 1 1 8 ? ? ? PRD_001135 C7 C7 C 0 1 Y N N ? ? ? 9.197 2.597 -1.723 PHQ 1 C7 polymer 1 1 9 ? ? ? PRD_001135 C8 C8 C 0 1 Y N N ? ? ? 8.460 1.433 -1.609 PHQ 1 C8 polymer 1 1 10 ? ? ? PRD_001135 N1 N1 N 0 1 N N N 37.047 -19.141 34.845 3.773 -0.808 0.062 ASN 2 N polymer 1 1 11 ? ? ? PRD_001135 C9 C9 C 0 1 N N S 36.757 -17.710 35.022 2.825 -1.925 0.070 ASN 2 CA polymer 1 1 12 ? ? ? PRD_001135 C10 C10 C 0 1 N N N 38.020 -16.901 34.694 1.488 -1.452 -0.439 ASN 2 C polymer 1 1 13 ? ? ? PRD_001135 O3 O3 O 0 1 N N N 39.090 -17.239 35.217 1.244 -0.266 -0.494 ASN 2 O polymer 1 1 14 ? ? ? PRD_001135 C11 C11 C 0 1 N N N 36.299 -17.419 36.465 2.670 -2.452 1.498 ASN 2 CB polymer 1 1 15 ? ? ? PRD_001135 C12 C12 C 0 1 N N N 35.454 -16.176 36.638 2.256 -1.324 2.408 ASN 2 CG polymer 1 1 16 ? ? ? PRD_001135 O4 O4 O 0 1 N N N 35.871 -15.049 36.350 2.082 -0.213 1.955 ASN 2 OD1 polymer 1 1 17 ? ? ? PRD_001135 N2 N2 N 0 1 N N N 34.261 -16.348 37.180 2.080 -1.551 3.725 ASN 2 ND2 polymer 1 1 18 ? ? ? PRD_001135 N3 N3 N 0 1 N N N 37.947 -15.835 33.849 0.562 -2.349 -0.833 PRO 3 N polymer 1 1 19 ? ? ? PRD_001135 C13 C13 C 0 1 N N S 39.168 -15.049 33.571 -0.740 -2.028 -1.437 PRO 3 CA polymer 1 1 20 ? ? ? PRD_001135 C14 C14 C 0 1 N N N 39.609 -14.207 34.776 -1.549 -1.180 -0.489 PRO 3 C polymer 1 1 21 ? ? ? PRD_001135 O5 O5 O 0 1 N N N 38.887 -14.156 35.780 -1.090 -0.870 0.589 PRO 3 O polymer 1 1 22 ? ? ? PRD_001135 C15 C15 C 0 1 N N N 38.779 -14.187 32.359 -1.466 -3.364 -1.697 PRO 3 CB polymer 1 1 23 ? ? ? PRD_001135 C16 C16 C 0 1 N N N 37.311 -14.081 32.410 -0.772 -4.336 -0.707 PRO 3 CG polymer 1 1 24 ? ? ? PRD_001135 C17 C17 C 0 1 N N N 36.769 -15.282 33.142 0.689 -3.815 -0.736 PRO 3 CD polymer 1 1 25 ? ? ? PRD_001135 N4 N4 N 0 1 N N N 40.800 -13.563 34.694 -2.783 -0.767 -0.841 GLN 4 N polymer 1 1 26 ? ? ? PRD_001135 C18 C18 C 0 1 N N S 41.313 -12.717 35.774 -3.570 0.056 0.080 GLN 4 CA polymer 1 1 27 ? ? ? PRD_001135 C19 C19 C 0 1 N N N 40.392 -11.496 35.921 -5.037 -0.120 -0.216 GLN 4 C polymer 1 1 28 ? ? ? PRD_001135 O6 O6 O 0 1 N N N 40.125 -10.806 34.940 -5.390 -0.861 -1.109 GLN 4 O polymer 1 1 29 ? ? ? PRD_001135 C20 C20 C 0 1 N N N 42.782 -12.324 35.517 -3.187 1.527 -0.097 GLN 4 CB polymer 1 1 30 ? ? ? PRD_001135 C21 C21 C 0 1 N N N 43.489 -11.623 36.689 -1.730 1.729 0.324 GLN 4 CG polymer 1 1 31 ? ? ? PRD_001135 C22 C22 C 0 1 N N N 43.596 -12.471 37.937 -1.353 3.177 0.149 GLN 4 CD polymer 1 1 32 ? ? ? PRD_001135 O7 O7 O 0 1 N N N 43.834 -13.679 37.892 -2.169 3.970 -0.270 GLN 4 OE1 polymer 1 1 33 ? ? ? PRD_001135 N5 N5 N 0 1 N N N 43.421 -11.852 39.084 -0.108 3.592 0.459 GLN 4 NE2 polymer 1 1 34 ? ? ? PRD_001135 N6 N6 N 0 1 N N N 39.802 -11.281 37.114 -5.956 0.545 0.511 B27 5 N polymer 1 1 35 ? ? ? PRD_001135 C23 C23 C 0 1 N N S 38.878 -10.174 37.427 -7.382 0.374 0.222 B27 5 CA polymer 1 1 36 ? ? ? PRD_001135 C24 C24 C 0 1 N N R 37.522 -10.649 37.972 -8.198 0.684 1.479 B27 5 CB polymer 1 1 37 ? ? ? PRD_001135 C25 C25 C 0 1 N N N 36.664 -11.240 36.848 -7.700 -0.184 2.637 B27 5 CG2 polymer 1 1 38 ? ? ? PRD_001135 O8 O8 O 0 1 N N N 37.709 -11.616 39.008 -8.044 2.064 1.819 B27 5 OG1 polymer 1 1 39 ? ? ? PRD_001135 S1 S1 S 0 1 N N N 41.016 -9.857 39.241 -6.936 0.867 -2.431 B27 5 SG polymer 1 1 40 ? ? ? PRD_001135 C26 C26 C 0 1 N N N 39.514 -9.196 38.418 -7.794 1.328 -0.901 B27 5 C polymer 1 1 41 ? ? ? PRD_001135 H1 H1 H 0 1 N N N ? ? ? 7.677 -0.894 0.659 PHQ 1 H21 polymer 1 1 42 ? ? ? PRD_001135 H2 H2 H 0 1 N N N ? ? ? 7.538 -0.979 -1.113 PHQ 1 H22 polymer 1 1 43 ? ? ? PRD_001135 H3 H3 H 0 1 N N N ? ? ? 8.425 1.141 1.751 PHQ 1 H41 polymer 1 1 44 ? ? ? PRD_001135 H4 H4 H 0 1 N N N ? ? ? 9.745 3.210 1.549 PHQ 1 H51 polymer 1 1 45 ? ? ? PRD_001135 H5 H5 H 0 1 N N N ? ? ? 10.238 4.143 -0.676 PHQ 1 H61 polymer 1 1 46 ? ? ? PRD_001135 H6 H6 H 0 1 N N N ? ? ? 9.413 3.006 -2.698 PHQ 1 H71 polymer 1 1 47 ? ? ? PRD_001135 H7 H7 H 0 1 N N N ? ? ? 8.101 0.933 -2.496 PHQ 1 H81 polymer 1 1 48 ? ? ? PRD_001135 H8 H8 H 0 1 N N N 37.225 -19.703 35.653 3.448 0.104 0.119 ASN 2 H polymer 1 1 49 ? ? ? PRD_001135 H9 H9 H 0 1 N N N 35.956 -17.408 34.331 3.198 -2.722 -0.573 ASN 2 HA polymer 1 1 50 ? ? ? PRD_001135 H10 H10 H 0 1 N N N 35.711 -18.281 36.815 1.909 -3.232 1.517 ASN 2 HB2 polymer 1 1 51 ? ? ? PRD_001135 H11 H11 H 0 1 N N N 37.197 -17.309 37.091 3.620 -2.864 1.838 ASN 2 HB3 polymer 1 1 52 ? ? ? PRD_001135 H12 H12 H 0 0 N N N 33.677 -15.558 37.365 2.219 -2.440 4.087 ASN 2 HD21 polymer 1 1 53 ? ? ? PRD_001135 H13 H13 H 0 0 N N N 33.942 -17.269 37.406 1.814 -0.825 4.310 ASN 2 HD22 polymer 1 1 54 ? ? ? PRD_001135 H14 H14 H 0 1 N N N 39.988 -15.723 33.284 -0.591 -1.495 -2.376 PRO 3 HA polymer 1 1 55 ? ? ? PRD_001135 H15 H15 H 0 1 N N N 39.240 -13.191 32.431 -2.529 -3.276 -1.470 PRO 3 HB2 polymer 1 1 56 ? ? ? PRD_001135 H16 H16 H 0 1 N N N 39.098 -14.671 31.424 -1.317 -3.690 -2.727 PRO 3 HB3 polymer 1 1 57 ? ? ? PRD_001135 H17 H17 H 0 1 N N N 37.024 -13.162 32.942 -1.202 -4.250 0.291 PRO 3 HG2 polymer 1 1 58 ? ? ? PRD_001135 H18 H18 H 0 1 N N N 36.905 -14.055 31.388 -0.825 -5.364 -1.067 PRO 3 HG3 polymer 1 1 59 ? ? ? PRD_001135 H19 H19 H 0 1 N N N 36.357 -16.017 32.435 1.217 -4.208 -1.604 PRO 3 HD2 polymer 1 1 60 ? ? ? PRD_001135 H20 H20 H 0 1 N N N 35.988 -14.984 33.857 1.208 -4.090 0.182 PRO 3 HD3 polymer 1 1 61 ? ? ? PRD_001135 H21 H21 H 0 1 N N N 41.349 -13.670 33.865 -3.150 -1.016 -1.704 GLN 4 H polymer 1 1 62 ? ? ? PRD_001135 H22 H22 H 0 1 N N N 41.276 -13.284 36.716 -3.367 -0.251 1.106 GLN 4 HA polymer 1 1 63 ? ? ? PRD_001135 H23 H23 H 0 1 N N N 43.343 -13.240 35.281 -3.306 1.810 -1.143 GLN 4 HB2 polymer 1 1 64 ? ? ? PRD_001135 H24 H24 H 0 1 N N N 42.806 -11.646 34.651 -3.833 2.148 0.523 GLN 4 HB3 polymer 1 1 65 ? ? ? PRD_001135 H25 H25 H 0 1 N N N 44.505 -11.351 36.367 -1.611 1.446 1.370 GLN 4 HG2 polymer 1 1 66 ? ? ? PRD_001135 H26 H26 H 0 1 N N N 42.926 -10.711 36.937 -1.083 1.108 -0.296 GLN 4 HG3 polymer 1 1 67 ? ? ? PRD_001135 H27 H27 H 0 0 N N N 43.480 -12.363 39.942 0.545 2.958 0.795 GLN 4 HE21 polymer 1 1 68 ? ? ? PRD_001135 H28 H28 H 0 0 N N N 43.229 -10.871 39.098 0.134 4.524 0.347 GLN 4 HE22 polymer 1 1 69 ? ? ? PRD_001135 H29 H29 H 0 1 N N N 38.682 -9.620 36.497 -7.569 -0.654 -0.088 B27 5 HA polymer 1 1 70 ? ? ? PRD_001135 H30 H30 H 0 1 N N N 36.994 -9.774 38.380 -9.250 0.471 1.291 B27 5 HB polymer 1 1 71 ? ? ? PRD_001135 H31 H31 H 0 0 N N N 36.863 -11.899 39.334 -7.130 2.325 1.999 B27 5 HOG1 polymer 1 1 72 ? ? ? PRD_001135 H32 H32 H 0 1 N N N 37.187 -12.097 36.400 -8.281 0.037 3.532 B27 5 HG2 polymer 1 1 73 ? ? ? PRD_001135 H33 H33 H 0 0 N N N 35.700 -11.573 37.259 -7.818 -1.237 2.378 B27 5 HG2A polymer 1 1 74 ? ? ? PRD_001135 H34 H34 H 0 0 N N N 36.489 -10.474 36.078 -6.648 0.028 2.825 B27 5 HG2B polymer 1 1 75 ? ? ? PRD_001135 H35 H35 H 0 1 N N N 39.790 -8.280 37.875 -8.871 1.265 -1.055 B27 5 HX polymer 1 1 76 ? ? ? PRD_001135 H36 H36 H 0 1 N N N 38.771 -8.953 39.192 -7.525 2.349 -0.627 B27 5 HXA polymer 1 1 77 ? ? ? PRD_001135 H37 H37 H 0 1 N N N 40.008 -11.927 37.849 -5.674 1.138 1.224 B27 5 H2 polymer 1 1 78 ? ? ? PRD_001135 H38 H38 H 0 1 N N N 41.359 -8.868 40.012 -7.386 1.774 -3.316 B27 5 HSG polymer 1 1 79 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_001135 C1 O1 DOUB N N 1 PRD_001135 C1 O2 SING N N 2 PRD_001135 O2 C2 SING N N 3 PRD_001135 C2 C3 SING N N 4 PRD_001135 C2 H1 SING N N 5 PRD_001135 C2 H2 SING N N 6 PRD_001135 C3 C4 DOUB Y N 7 PRD_001135 C3 C8 SING Y N 8 PRD_001135 C4 C5 SING Y N 9 PRD_001135 C4 H3 SING N N 10 PRD_001135 C5 C6 DOUB Y N 11 PRD_001135 C5 H4 SING N N 12 PRD_001135 C6 C7 SING Y N 13 PRD_001135 C6 H5 SING N N 14 PRD_001135 C7 C8 DOUB Y N 15 PRD_001135 C7 H6 SING N N 16 PRD_001135 C8 H7 SING N N 17 PRD_001135 N1 C9 SING N N 18 PRD_001135 N1 H8 SING N N 19 PRD_001135 C9 C10 SING N N 20 PRD_001135 C9 C11 SING N N 21 PRD_001135 C9 H9 SING N N 22 PRD_001135 C10 O3 DOUB N N 23 PRD_001135 C11 C12 SING N N 24 PRD_001135 C11 H10 SING N N 25 PRD_001135 C11 H11 SING N N 26 PRD_001135 C12 O4 DOUB N N 27 PRD_001135 C12 N2 SING N N 28 PRD_001135 N2 H12 SING N N 29 PRD_001135 N2 H13 SING N N 30 PRD_001135 N3 C13 SING N N 31 PRD_001135 N3 C17 SING N N 32 PRD_001135 C13 C14 SING N N 33 PRD_001135 C13 C15 SING N N 34 PRD_001135 C13 H14 SING N N 35 PRD_001135 C14 O5 DOUB N N 36 PRD_001135 C15 C16 SING N N 37 PRD_001135 C15 H15 SING N N 38 PRD_001135 C15 H16 SING N N 39 PRD_001135 C16 C17 SING N N 40 PRD_001135 C16 H17 SING N N 41 PRD_001135 C16 H18 SING N N 42 PRD_001135 C17 H19 SING N N 43 PRD_001135 C17 H20 SING N N 44 PRD_001135 N4 C18 SING N N 45 PRD_001135 N4 H21 SING N N 46 PRD_001135 C18 C19 SING N N 47 PRD_001135 C18 C20 SING N N 48 PRD_001135 C18 H22 SING N N 49 PRD_001135 C19 O6 DOUB N N 50 PRD_001135 C20 C21 SING N N 51 PRD_001135 C20 H23 SING N N 52 PRD_001135 C20 H24 SING N N 53 PRD_001135 C21 C22 SING N N 54 PRD_001135 C21 H25 SING N N 55 PRD_001135 C21 H26 SING N N 56 PRD_001135 C22 O7 DOUB N N 57 PRD_001135 C22 N5 SING N N 58 PRD_001135 N5 H27 SING N N 59 PRD_001135 N5 H28 SING N N 60 PRD_001135 N6 C23 SING N N 61 PRD_001135 N6 H37 SING N N 62 PRD_001135 C26 C23 SING N N 63 PRD_001135 C23 C24 SING N N 64 PRD_001135 C23 H29 SING N N 65 PRD_001135 C25 C24 SING N N 66 PRD_001135 C24 O8 SING N N 67 PRD_001135 C24 H30 SING N N 68 PRD_001135 H33 C25 SING N N 69 PRD_001135 C25 H34 SING N N 70 PRD_001135 C25 H32 SING N N 71 PRD_001135 H31 O8 SING N N 72 PRD_001135 S1 C26 SING N N 73 PRD_001135 S1 H38 SING N N 74 PRD_001135 H35 C26 SING N N 75 PRD_001135 C26 H36 SING N N 76 PRD_001135 C1 N1 SING N N 77 PRD_001135 C10 N3 SING N N 78 PRD_001135 C14 N4 SING N N 79 PRD_001135 C19 N6 SING N N 80 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_001135 SMILES ACDLabs 12.01 "O=C(NC(C(=O)NC(C(O)C)CS)CCC(=O)N)C2N(C(=O)C(NC(=O)OCc1ccccc1)CC(=O)N)CCC2" PRD_001135 InChI InChI 1.03 "InChI=1S/C26H38N6O8S/c1-15(33)19(14-41)30-23(36)17(9-10-21(27)34)29-24(37)20-8-5-11-32(20)25(38)18(12-22(28)35)31-26(39)40-13-16-6-3-2-4-7-16/h2-4,6-7,15,17-20,33,41H,5,8-14H2,1H3,(H2,27,34)(H2,28,35)(H,29,37)(H,30,36)(H,31,39)/t15-,17+,18+,19-,20+/m1/s1" PRD_001135 InChIKey InChI 1.03 BORPOXYDGNODOR-ZKIDJSGLSA-N PRD_001135 SMILES_CANONICAL CACTVS 3.385 "C[C@@H](O)[C@@H](CS)NC(=O)[C@H](CCC(N)=O)NC(=O)[C@@H]1CCCN1C(=O)[C@H](CC(N)=O)NC(=O)OCc2ccccc2" PRD_001135 SMILES CACTVS 3.385 "C[CH](O)[CH](CS)NC(=O)[CH](CCC(N)=O)NC(=O)[CH]1CCCN1C(=O)[CH](CC(N)=O)NC(=O)OCc2ccccc2" PRD_001135 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@H]([C@@H](CS)NC(=O)[C@H](CCC(=O)N)NC(=O)[C@@H]1CCCN1C(=O)[C@H](CC(=O)N)NC(=O)OCc2ccccc2)O" PRD_001135 SMILES "OpenEye OEToolkits" 1.7.6 "CC(C(CS)NC(=O)C(CCC(=O)N)NC(=O)C1CCCN1C(=O)C(CC(=O)N)NC(=O)OCc2ccccc2)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD_001135 "SYSTEMATIC NAME" ACDLabs 12.01 "N~2~-[(benzyloxy)carbonyl]-L-asparaginyl-L-prolyl-N~1~-[(2S,3R)-3-hydroxy-1-sulfanylbutan-2-yl]-L-glutamamide" PRD_001135 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(phenylmethyl) N-[(2S)-4-azanyl-1-[(2S)-2-[[(2S)-5-azanyl-1,5-bis(oxidanylidene)-1-[[(2S,3R)-3-oxidanyl-1-sulfanyl-butan-2-yl]amino]pentan-2-yl]carbamoyl]pyrrolidin-1-yl]-1,4-bis(oxidanylidene)butan-2-yl]carbamate" #