data_PRDCC_001148 # _chem_comp.id PRD_001148 _chem_comp.name BIVALIRUDIN _chem_comp.formula "C20 H31 N6 O4" _chem_comp.formula_weight 419.498 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_pcm ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_001148 N1 N1 N 0 1 N N N 5.310 -42.937 2.069 3.569 -1.089 -1.844 DPN 1 N polymer 1 1 1 ? ? ? PRD_001148 C1 C1 C 0 1 N N R 6.155 -41.858 1.507 3.445 -0.437 -0.534 DPN 1 CA polymer 1 1 2 ? ? ? PRD_001148 C2 C2 C 0 1 N N N 5.808 -40.585 2.268 1.993 -0.383 -0.134 DPN 1 C polymer 1 1 3 ? ? ? PRD_001148 O1 O1 O 0 1 N N N 5.684 -40.660 3.525 1.194 -1.133 -0.654 DPN 1 O polymer 1 1 4 ? ? ? PRD_001148 C3 C3 C 0 1 N N N 7.626 -42.225 1.657 4.232 -1.234 0.509 DPN 1 CB polymer 1 1 5 ? ? ? PRD_001148 C4 C4 C 0 1 Y N N 8.591 -41.217 1.065 5.701 -1.184 0.176 DPN 1 CG polymer 1 1 6 ? ? ? PRD_001148 C5 C5 C 0 1 Y N N 8.604 -41.015 -0.354 6.492 -0.174 0.690 DPN 1 CD1 polymer 1 1 7 ? ? ? PRD_001148 C6 C6 C 0 1 Y N N 9.460 -40.513 1.888 6.258 -2.152 -0.639 DPN 1 CD2 polymer 1 1 8 ? ? ? PRD_001148 C7 C7 C 0 1 Y N N 9.501 -40.084 -0.839 7.839 -0.128 0.384 DPN 1 CE1 polymer 1 1 9 ? ? ? PRD_001148 C8 C8 C 0 1 Y N N 10.334 -39.569 1.375 7.605 -2.107 -0.944 DPN 1 CE2 polymer 1 1 10 ? ? ? PRD_001148 C9 C9 C 0 1 Y N N 10.334 -39.379 0.007 8.396 -1.093 -0.435 DPN 1 CZ polymer 1 1 11 ? ? ? PRD_001148 N2 N2 N 0 1 N N N 5.612 -39.462 1.613 1.583 0.498 0.800 PRO 2 N polymer 1 1 12 ? ? ? PRD_001148 C10 C10 C 0 1 N N S 5.264 -38.216 2.328 0.203 0.656 1.281 PRO 2 CA polymer 1 1 13 ? ? ? PRD_001148 C11 C11 C 0 1 N N N 3.907 -38.361 2.997 -0.702 1.018 0.132 PRO 2 C polymer 1 1 14 ? ? ? PRD_001148 O2 O2 O 0 1 N N N 2.974 -38.943 2.411 -0.246 1.134 -0.986 PRO 2 O polymer 1 1 15 ? ? ? PRD_001148 C12 C12 C 0 1 N N N 5.174 -37.151 1.183 0.209 1.795 2.323 PRO 2 CB polymer 1 1 16 ? ? ? PRD_001148 C13 C13 C 0 1 N N N 5.906 -37.777 0.045 1.487 2.594 1.957 PRO 2 CG polymer 1 1 17 ? ? ? PRD_001148 C14 C14 C 0 1 N N N 5.605 -39.284 0.162 2.445 1.458 1.513 PRO 2 CD polymer 1 1 18 ? ? ? PRD_001148 N3 N3 N 0 1 N N N 3.763 -37.859 4.206 -2.019 1.212 0.346 ARG 3 N polymer 1 1 19 ? ? ? PRD_001148 C15 C15 C 0 1 N N S 2.482 -38.030 4.914 -2.899 1.563 -0.771 ARG 3 CA polymer 1 1 20 ? ? ? PRD_001148 C16 C16 C 0 1 N N N 1.565 -36.884 4.689 -2.862 3.054 -0.990 ARG 3 C polymer 1 1 21 ? ? ? PRD_001148 O3 O3 O 0 1 N N N 0.622 -36.603 5.461 -2.171 3.751 -0.285 ARG 3 O polymer 1 1 22 ? ? ? PRD_001148 C17 C17 C 0 1 N N N 2.756 -38.399 6.413 -4.330 1.130 -0.449 ARG 3 CB polymer 1 1 23 ? ? ? PRD_001148 C18 C18 C 0 1 N N N 3.063 -39.911 6.472 -4.391 -0.396 -0.349 ARG 3 CG polymer 1 1 24 ? ? ? PRD_001148 C19 C19 C 0 1 N N N 3.610 -40.331 7.832 -5.823 -0.828 -0.027 ARG 3 CD polymer 1 1 25 ? ? ? PRD_001148 N4 N4 N 0 1 N N N 3.634 -41.788 7.876 -5.882 -2.289 0.068 ARG 3 NE polymer 1 1 26 ? ? ? PRD_001148 C20 C20 C 0 1 N N N 3.819 -42.465 9.003 -7.068 -2.909 0.350 ARG 3 CZ polymer 1 1 27 ? ? ? PRD_001148 N5 N5 N 0 1 N N N 4.089 -41.863 10.154 -8.170 -2.185 0.539 ARG 3 NH1 polymer 1 1 28 ? ? ? PRD_001148 N6 N6 N 1 1 N N N 3.750 -43.816 8.984 -7.121 -4.237 0.437 ARG 3 NH2 polymer 1 1 29 ? ? ? PRD_001148 O4 O4 O 0 1 N Y N 1.848 -36.024 3.793 -3.596 3.607 -1.968 ARG 3 OXT polymer 1 1 30 ? ? ? PRD_001148 H1 H1 H 0 1 N N N 5.506 -43.796 1.596 4.526 -1.079 -2.164 DPN 1 H polymer 1 1 31 ? ? ? PRD_001148 H2 H2 H 0 1 N Y N 5.507 -43.041 3.044 3.206 -2.030 -1.816 DPN 1 H2 polymer 1 1 32 ? ? ? PRD_001148 H3 H3 H 0 1 N N N 5.922 -41.719 0.441 3.844 0.576 -0.592 DPN 1 HA polymer 1 1 33 ? ? ? PRD_001148 H4 H4 H 0 1 N N N 7.848 -42.323 2.730 4.068 -0.802 1.496 DPN 1 HB2 polymer 1 1 34 ? ? ? PRD_001148 H5 H5 H 0 1 N N N 7.791 -43.192 1.159 3.893 -2.270 0.505 DPN 1 HB3 polymer 1 1 35 ? ? ? PRD_001148 H6 H6 H 0 1 N N N 7.945 -41.564 -1.011 6.058 0.580 1.330 DPN 1 HD1 polymer 1 1 36 ? ? ? PRD_001148 H7 H7 H 0 1 N N N 9.454 -40.706 2.951 5.641 -2.944 -1.036 DPN 1 HD2 polymer 1 1 37 ? ? ? PRD_001148 H8 H8 H 0 1 N N N 9.552 -39.903 -1.903 8.458 0.661 0.785 DPN 1 HE1 polymer 1 1 38 ? ? ? PRD_001148 H9 H9 H 0 1 N N N 10.990 -39.003 2.020 8.041 -2.863 -1.581 DPN 1 HE2 polymer 1 1 39 ? ? ? PRD_001148 H10 H10 H 0 1 N N N 11.011 -38.652 -0.417 9.448 -1.058 -0.674 DPN 1 HZ polymer 1 1 40 ? ? ? PRD_001148 H11 H11 H 0 1 N N N 6.038 -37.934 3.057 -0.137 -0.271 1.743 PRO 2 HA polymer 1 1 41 ? ? ? PRD_001148 H12 H12 H 0 1 N N N 4.126 -36.956 0.913 -0.679 2.418 2.218 PRO 2 HB2 polymer 1 1 42 ? ? ? PRD_001148 H13 H13 H 0 1 N N N 5.656 -36.210 1.487 0.282 1.392 3.333 PRO 2 HB3 polymer 1 1 43 ? ? ? PRD_001148 H14 H14 H 0 1 N N N 5.540 -37.382 -0.914 1.293 3.288 1.139 PRO 2 HG2 polymer 1 1 44 ? ? ? PRD_001148 H15 H15 H 0 1 N N N 6.987 -37.590 0.130 1.883 3.118 2.827 PRO 2 HG3 polymer 1 1 45 ? ? ? PRD_001148 H16 H16 H 0 1 N N N 6.385 -39.890 -0.322 2.904 0.984 2.381 PRO 2 HD2 polymer 1 1 46 ? ? ? PRD_001148 H17 H17 H 0 1 N N N 4.625 -39.534 -0.270 3.212 1.849 0.843 PRO 2 HD3 polymer 1 1 47 ? ? ? PRD_001148 H18 H18 H 0 1 N N N 4.517 -37.366 4.640 -2.383 1.118 1.240 ARG 3 H polymer 1 1 48 ? ? ? PRD_001148 H19 H19 H 0 1 N N N 1.994 -38.913 4.475 -2.560 1.055 -1.674 ARG 3 HA polymer 1 1 49 ? ? ? PRD_001148 H20 H20 H 0 1 N N N 3.617 -37.826 6.789 -4.637 1.569 0.501 ARG 3 HB2 polymer 1 1 50 ? ? ? PRD_001148 H21 H21 H 0 1 N N N 1.870 -38.172 7.023 -4.999 1.470 -1.239 ARG 3 HB3 polymer 1 1 51 ? ? ? PRD_001148 H22 H22 H 0 1 N N N 2.136 -40.469 6.274 -4.085 -0.834 -1.299 ARG 3 HG2 polymer 1 1 52 ? ? ? PRD_001148 H23 H23 H 0 1 N N N 3.808 -40.152 5.700 -3.722 -0.735 0.441 ARG 3 HG3 polymer 1 1 53 ? ? ? PRD_001148 H24 H24 H 0 1 N N N 4.628 -39.937 7.963 -6.130 -0.390 0.923 ARG 3 HD2 polymer 1 1 54 ? ? ? PRD_001148 H25 H25 H 0 1 N N N 2.961 -39.944 8.631 -6.492 -0.489 -0.817 ARG 3 HD3 polymer 1 1 55 ? ? ? PRD_001148 H26 H26 H 0 1 N N N 3.506 -42.297 7.025 -5.079 -2.817 -0.069 ARG 3 HE polymer 1 1 56 ? ? ? PRD_001148 H27 H27 H 0 0 N N N 4.236 -42.407 10.980 -8.131 -1.218 0.476 ARG 3 HH11 polymer 1 1 57 ? ? ? PRD_001148 H28 H28 H 0 0 N N N 4.146 -40.865 10.195 -9.011 -2.624 0.739 ARG 3 HH12 polymer 1 1 58 ? ? ? PRD_001148 H29 H29 H 0 0 N N N 3.901 -44.336 9.825 -6.319 -4.765 0.299 ARG 3 HH21 polymer 1 1 59 ? ? ? PRD_001148 H30 H30 H 0 0 N N N 3.548 -44.294 8.129 -7.963 -4.677 0.637 ARG 3 HH22 polymer 1 1 60 ? ? ? PRD_001148 H31 H31 H 0 1 N Y N 1.263 -35.280 3.871 -3.540 4.567 -2.070 ARG 3 HXT polymer 1 1 61 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_001148 N1 C1 SING N N 1 PRD_001148 N1 H1 SING N N 2 PRD_001148 N1 H2 SING N N 3 PRD_001148 C1 C2 SING N N 4 PRD_001148 C1 C3 SING N N 5 PRD_001148 C1 H3 SING N N 6 PRD_001148 C2 O1 DOUB N N 7 PRD_001148 C3 C4 SING N N 8 PRD_001148 C3 H4 SING N N 9 PRD_001148 C3 H5 SING N N 10 PRD_001148 C4 C5 DOUB Y N 11 PRD_001148 C4 C6 SING Y N 12 PRD_001148 C5 C7 SING Y N 13 PRD_001148 C5 H6 SING N N 14 PRD_001148 C6 C8 DOUB Y N 15 PRD_001148 C6 H7 SING N N 16 PRD_001148 C7 C9 DOUB Y N 17 PRD_001148 C7 H8 SING N N 18 PRD_001148 C8 C9 SING Y N 19 PRD_001148 C8 H9 SING N N 20 PRD_001148 C9 H10 SING N N 21 PRD_001148 N2 C10 SING N N 22 PRD_001148 N2 C14 SING N N 23 PRD_001148 C10 C11 SING N N 24 PRD_001148 C10 C12 SING N N 25 PRD_001148 C10 H11 SING N N 26 PRD_001148 C11 O2 DOUB N N 27 PRD_001148 C12 C13 SING N N 28 PRD_001148 C12 H12 SING N N 29 PRD_001148 C12 H13 SING N N 30 PRD_001148 C13 C14 SING N N 31 PRD_001148 C13 H14 SING N N 32 PRD_001148 C13 H15 SING N N 33 PRD_001148 C14 H16 SING N N 34 PRD_001148 C14 H17 SING N N 35 PRD_001148 N3 C15 SING N N 36 PRD_001148 N3 H18 SING N N 37 PRD_001148 C15 C16 SING N N 38 PRD_001148 C15 C17 SING N N 39 PRD_001148 C15 H19 SING N N 40 PRD_001148 C16 O3 DOUB N N 41 PRD_001148 C16 O4 SING N N 42 PRD_001148 C17 C18 SING N N 43 PRD_001148 C17 H20 SING N N 44 PRD_001148 C17 H21 SING N N 45 PRD_001148 C18 C19 SING N N 46 PRD_001148 C18 H22 SING N N 47 PRD_001148 C18 H23 SING N N 48 PRD_001148 C19 N4 SING N N 49 PRD_001148 C19 H24 SING N N 50 PRD_001148 C19 H25 SING N N 51 PRD_001148 N4 C20 SING N N 52 PRD_001148 N4 H26 SING N N 53 PRD_001148 C20 N5 SING N N 54 PRD_001148 C20 N6 DOUB N N 55 PRD_001148 N5 H27 SING N N 56 PRD_001148 N5 H28 SING N N 57 PRD_001148 N6 H29 SING N N 58 PRD_001148 N6 H30 SING N N 59 PRD_001148 O4 H31 SING N N 60 PRD_001148 C2 N2 SING N N 61 PRD_001148 C11 N3 SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_001148 SMILES ACDLabs 12.01 "O=C(NC(C(=O)O)CCCNC(=[NH2+])\N)C2N(C(=O)C(N)Cc1ccccc1)CCC2" PRD_001148 InChI InChI 1.03 "InChI=1S/C20H30N6O4/c21-14(12-13-6-2-1-3-7-13)18(28)26-11-5-9-16(26)17(27)25-15(19(29)30)8-4-10-24-20(22)23/h1-3,6-7,14-16H,4-5,8-12,21H2,(H,25,27)(H,29,30)(H4,22,23,24)/p+1/t14-,15+,16+/m1/s1" PRD_001148 InChIKey InChI 1.03 NTUPOKHATNSWCY-PMPSAXMXSA-O PRD_001148 SMILES_CANONICAL CACTVS 3.385 "N[C@H](Cc1ccccc1)C(=O)N2CCC[C@H]2C(=O)N[C@@H](CCCNC(N)=[NH2+])C(O)=O" PRD_001148 SMILES CACTVS 3.385 "N[CH](Cc1ccccc1)C(=O)N2CCC[CH]2C(=O)N[CH](CCCNC(N)=[NH2+])C(O)=O" PRD_001148 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)C[C@H](C(=O)N2CCC[C@H]2C(=O)N[C@@H](CCCNC(=[NH2+])N)C(=O)O)N" PRD_001148 SMILES "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)CC(C(=O)N2CCCC2C(=O)NC(CCCNC(=[NH2+])N)C(=O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD_001148 "SYSTEMATIC NAME" ACDLabs 12.01 "D-phenylalanyl-L-prolyl-N~5~-[amino(iminio)methyl]-L-ornithine" PRD_001148 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[azanyl-[[(4S)-4-[[(2S)-1-[(2R)-2-azanyl-3-phenyl-propanoyl]pyrrolidin-2-yl]carbonylamino]-5-oxidanyl-5-oxidanylidene-pentyl]amino]methylidene]azanium" #