data_PRDCC_001233 # _chem_comp.id PRD_001233 _chem_comp.name cyclic-tris-phenylselenazole _chem_comp.formula "C36 H30 N6 O3 Se3" _chem_comp.formula_weight 831.542 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_001233 C1 C1 C 0 1 N N N 70.048 1.157 -5.539 -3.506 1.024 1.132 30F 1 C polymer 1 1 1 ? ? ? PRD_001233 C2 C2 C 0 1 N N N 70.293 1.460 -6.855 -2.856 2.345 1.032 30F 1 CA polymer 1 1 2 ? ? ? PRD_001233 C3 C3 C 0 1 N N N 69.401 2.178 -7.567 -3.643 3.430 0.802 30F 1 C09 polymer 1 1 3 ? ? ? PRD_001233 O1 O1 O 0 1 N N N 69.180 1.641 -4.845 -4.714 0.932 1.026 30F 1 O polymer 1 1 4 ? ? ? PRD_001233 SE1 SE1 SE 0 0 N N N 70.064 2.429 -9.376 -2.265 4.859 0.772 30F 1 SE2 polymer 1 1 5 ? ? ? PRD_001233 N1 N1 N 0 1 N N N 71.376 1.100 -7.453 -1.528 2.430 1.176 30F 1 N polymer 1 1 6 ? ? ? PRD_001233 N2 N2 N 0 1 N N N 70.905 0.221 -5.036 -2.756 -0.093 1.336 PHE 2 N polymer 1 1 7 ? ? ? PRD_001233 C4 C4 C 0 1 N N S 70.835 -0.236 -3.645 -3.507 -1.356 1.477 PHE 2 CA polymer 1 1 8 ? ? ? PRD_001233 C5 C5 C 0 1 N N N 71.685 0.677 -2.809 -2.593 -2.518 1.191 PHE 2 C polymer 1 1 9 ? ? ? PRD_001233 C6 C6 C 0 1 N N N 71.342 -1.687 -3.466 -4.674 -1.369 0.488 PHE 2 CB polymer 1 1 10 ? ? ? PRD_001233 C7 C7 C 0 1 Y N N 72.216 -1.849 -2.219 -4.155 -1.112 -0.904 PHE 2 CG polymer 1 1 11 ? ? ? PRD_001233 C8 C8 C 0 1 Y N N 73.544 -2.076 -2.329 -3.598 -2.145 -1.635 PHE 2 CD1 polymer 1 1 12 ? ? ? PRD_001233 C9 C9 C 0 1 Y N N 71.705 -1.750 -0.968 -4.241 0.154 -1.451 PHE 2 CD2 polymer 1 1 13 ? ? ? PRD_001233 C10 C10 C 0 1 Y N N 74.327 -2.202 -1.242 -3.122 -1.909 -2.911 PHE 2 CE1 polymer 1 1 14 ? ? ? PRD_001233 C11 C11 C 0 1 Y N N 72.485 -1.872 0.122 -3.765 0.390 -2.727 PHE 2 CE2 polymer 1 1 15 ? ? ? PRD_001233 C12 C12 C 0 1 Y N N 73.799 -2.102 -0.014 -3.203 -0.641 -3.456 PHE 2 CZ polymer 1 1 16 ? ? ? PRD_001233 C13 C13 C 0 1 N N N 74.948 1.785 -2.421 0.906 -3.579 0.956 30F 3 C polymer 1 1 17 ? ? ? PRD_001233 C14 C14 C 0 1 N N N 73.608 1.547 -2.235 -0.566 -3.670 0.921 30F 3 CA polymer 1 1 18 ? ? ? PRD_001233 C15 C15 C 0 1 N N N 72.921 2.202 -1.275 -1.128 -4.875 0.633 30F 3 C09 polymer 1 1 19 ? ? ? PRD_001233 O2 O2 O 0 1 N N N 75.723 2.130 -1.559 1.578 -4.568 0.738 30F 3 O polymer 1 1 20 ? ? ? PRD_001233 SE2 SE2 SE 0 0 N N N 71.039 1.720 -1.317 -3.051 -4.395 0.729 30F 3 SE2 polymer 1 1 21 ? ? ? PRD_001233 N3 N3 N 0 1 N N N 72.933 0.802 -3.021 -1.292 -2.576 1.177 30F 3 N polymer 1 1 22 ? ? ? PRD_001233 N4 N4 N 0 1 N N N 75.322 1.622 -3.736 1.516 -2.394 1.230 PHE 4 N polymer 1 1 23 ? ? ? PRD_001233 C16 C16 C 0 1 N N S 76.661 1.826 -4.316 2.990 -2.431 1.293 PHE 4 CA polymer 1 1 24 ? ? ? PRD_001233 C17 C17 C 0 1 N N N 76.353 2.667 -5.512 3.542 -1.040 1.126 PHE 4 C polymer 1 1 25 ? ? ? PRD_001233 C18 C18 C 0 1 N N N 77.364 0.524 -4.745 3.524 -3.328 0.175 PHE 4 CB polymer 1 1 26 ? ? ? PRD_001233 C19 C19 C 0 1 Y N N 76.499 -0.367 -5.623 2.996 -2.847 -1.151 PHE 4 CG polymer 1 1 27 ? ? ? PRD_001233 C20 C20 C 0 1 Y N N 75.474 -1.058 -5.086 3.581 -1.760 -1.775 PHE 4 CD1 polymer 1 1 28 ? ? ? PRD_001233 C21 C21 C 0 1 Y N N 76.725 -0.498 -6.948 1.930 -3.495 -1.747 PHE 4 CD2 polymer 1 1 29 ? ? ? PRD_001233 C22 C22 C 0 1 Y N N 74.688 -1.839 -5.841 3.096 -1.319 -2.992 PHE 4 CE1 polymer 1 1 30 ? ? ? PRD_001233 C23 C23 C 0 1 Y N N 75.950 -1.291 -7.709 1.446 -3.053 -2.964 PHE 4 CE2 polymer 1 1 31 ? ? ? PRD_001233 C24 C24 C 0 1 Y N N 74.936 -1.965 -7.152 2.027 -1.964 -3.586 PHE 4 CZ polymer 1 1 32 ? ? ? PRD_001233 C25 C25 C 0 1 N N N 74.369 2.667 -8.345 2.706 2.524 1.024 30F 5 C polymer 1 1 33 ? ? ? PRD_001233 C26 C26 C 0 1 N N N 75.300 2.995 -7.387 3.526 1.303 0.985 30F 5 CA polymer 1 1 34 ? ? ? PRD_001233 C27 C27 C 0 1 N N N 75.922 4.199 -7.415 4.868 1.440 0.800 30F 5 C09 polymer 1 1 35 ? ? ? PRD_001233 O3 O3 O 0 1 N N N 73.863 3.508 -9.044 3.241 3.610 0.918 30F 5 O polymer 1 1 36 ? ? ? PRD_001233 SE3 SE3 SE 0 0 N N N 77.084 4.411 -5.886 5.421 -0.466 0.829 30F 5 SE2 polymer 1 1 37 ? ? ? PRD_001233 N5 N5 N 0 1 N N N 75.521 2.261 -6.376 2.935 0.112 1.134 30F 5 N polymer 1 1 38 ? ? ? PRD_001233 N6 N6 N 0 1 N N N 73.914 1.371 -8.437 1.357 2.450 1.176 PHE 6 N polymer 1 1 39 ? ? ? PRD_001233 C28 C28 C 0 1 N N S 72.849 0.980 -9.380 0.651 3.744 1.265 PHE 6 CA polymer 1 1 40 ? ? ? PRD_001233 C29 C29 C 0 1 N N N 71.562 1.404 -8.680 -0.831 3.528 1.115 PHE 6 C polymer 1 1 41 ? ? ? PRD_001233 C30 C30 C 0 1 N N N 73.000 -0.523 -9.718 1.145 4.670 0.152 PHE 6 CB polymer 1 1 42 ? ? ? PRD_001233 C31 C31 C 0 1 Y N N 71.701 -1.177 -10.119 1.021 3.970 -1.176 PHE 6 CG polymer 1 1 43 ? ? ? PRD_001233 C32 C32 C 0 1 Y N N 71.403 -1.468 -11.403 -0.179 3.998 -1.863 PHE 6 CD1 polymer 1 1 44 ? ? ? PRD_001233 C33 C33 C 0 1 Y N N 70.820 -1.491 -9.163 2.108 3.305 -1.712 PHE 6 CD2 polymer 1 1 45 ? ? ? PRD_001233 C34 C34 C 0 1 Y N N 70.226 -2.052 -11.708 -0.293 3.355 -3.081 PHE 6 CE1 polymer 1 1 46 ? ? ? PRD_001233 C35 C35 C 0 1 Y N N 69.655 -2.058 -9.470 1.993 2.662 -2.930 PHE 6 CE2 polymer 1 1 47 ? ? ? PRD_001233 C36 C36 C 0 1 Y N N 69.350 -2.347 -10.737 0.792 2.686 -3.614 PHE 6 CZ polymer 1 1 48 ? ? ? PRD_001233 H1 H1 H 0 1 N N N 68.462 2.556 -7.190 -4.713 3.496 0.671 30F 1 H13 polymer 1 1 49 ? ? ? PRD_001233 H2 H2 H 0 1 N N N 71.604 -0.166 -5.637 -1.788 -0.061 1.386 PHE 2 H polymer 1 1 50 ? ? ? PRD_001233 H3 H3 H 0 1 N N N 69.795 -0.183 -3.291 -3.892 -1.439 2.494 PHE 2 HA polymer 1 1 51 ? ? ? PRD_001233 H4 H4 H 0 1 N N N 70.474 -2.357 -3.378 -5.165 -2.342 0.518 PHE 2 HB2 polymer 1 1 52 ? ? ? PRD_001233 H5 H5 H 0 1 N N N 71.933 -1.967 -4.351 -5.388 -0.592 0.758 PHE 2 HB3 polymer 1 1 53 ? ? ? PRD_001233 H6 H6 H 0 1 N N N 73.986 -2.158 -3.311 -3.534 -3.135 -1.209 PHE 2 HD1 polymer 1 1 54 ? ? ? PRD_001233 H7 H7 H 0 1 N N N 70.648 -1.569 -0.843 -4.680 0.960 -0.881 PHE 2 HD2 polymer 1 1 55 ? ? ? PRD_001233 H8 H8 H 0 1 N N N 75.385 -2.384 -1.359 -2.686 -2.715 -3.483 PHE 2 HE1 polymer 1 1 56 ? ? ? PRD_001233 H9 H9 H 0 1 N N N 72.052 -1.785 1.108 -3.833 1.379 -3.154 PHE 2 HE2 polymer 1 1 57 ? ? ? PRD_001233 H10 H10 H 0 1 N N N 74.427 -2.206 0.859 -2.831 -0.457 -4.453 PHE 2 HZ polymer 1 1 58 ? ? ? PRD_001233 H11 H11 H 0 1 N N N 73.359 2.900 -0.577 -0.660 -5.823 0.414 30F 3 H13 polymer 1 1 59 ? ? ? PRD_001233 H12 H12 H 0 1 N N N 74.604 1.333 -4.369 1.013 -1.577 1.375 PHE 4 H polymer 1 1 60 ? ? ? PRD_001233 H13 H13 H 0 1 N N N 77.304 2.380 -3.617 3.302 -2.831 2.258 PHE 4 HA polymer 1 1 61 ? ? ? PRD_001233 H14 H14 H 0 1 N N N 78.274 0.787 -5.304 4.614 -3.290 0.168 PHE 4 HB2 polymer 1 1 62 ? ? ? PRD_001233 H15 H15 H 0 1 N N N 77.639 -0.039 -3.841 3.198 -4.354 0.346 PHE 4 HB3 polymer 1 1 63 ? ? ? PRD_001233 H16 H16 H 0 1 N N N 75.282 -0.981 -4.026 4.416 -1.257 -1.312 PHE 4 HD1 polymer 1 1 64 ? ? ? PRD_001233 H17 H17 H 0 1 N N N 77.541 0.043 -7.404 1.477 -4.346 -1.262 PHE 4 HD2 polymer 1 1 65 ? ? ? PRD_001233 H18 H18 H 0 1 N N N 73.857 -2.365 -5.394 3.553 -0.470 -3.479 PHE 4 HE1 polymer 1 1 66 ? ? ? PRD_001233 H19 H19 H 0 1 N N N 76.145 -1.384 -8.767 0.613 -3.560 -3.430 PHE 4 HE2 polymer 1 1 67 ? ? ? PRD_001233 H20 H20 H 0 1 N N N 74.318 -2.610 -7.759 1.648 -1.618 -4.536 PHE 4 HZ polymer 1 1 68 ? ? ? PRD_001233 H21 H21 H 0 1 N N N 75.786 4.941 -8.188 5.462 2.333 0.669 30F 5 H13 polymer 1 1 69 ? ? ? PRD_001233 H22 H22 H 0 1 N N N 74.318 0.673 -7.846 0.888 1.602 1.222 PHE 6 H polymer 1 1 70 ? ? ? PRD_001233 H23 H23 H 0 1 N N N 72.953 1.559 -10.310 0.854 4.202 2.233 PHE 6 HA polymer 1 1 71 ? ? ? PRD_001233 H24 H24 H 0 1 N N N 73.713 -0.624 -10.549 0.543 5.579 0.142 PHE 6 HB2 polymer 1 1 72 ? ? ? PRD_001233 H25 H25 H 0 1 N N N 73.394 -1.042 -8.832 2.189 4.928 0.330 PHE 6 HB3 polymer 1 1 73 ? ? ? PRD_001233 H26 H26 H 0 1 N N N 72.108 -1.233 -12.187 -1.027 4.521 -1.446 PHE 6 HD1 polymer 1 1 74 ? ? ? PRD_001233 H27 H27 H 0 1 N N N 71.056 -1.282 -8.130 3.046 3.287 -1.178 PHE 6 HD2 polymer 1 1 75 ? ? ? PRD_001233 H28 H28 H 0 1 N N N 69.989 -2.282 -12.736 -1.231 3.377 -3.617 PHE 6 HE1 polymer 1 1 76 ? ? ? PRD_001233 H29 H29 H 0 1 N N N 68.949 -2.287 -8.685 2.843 2.143 -3.349 PHE 6 HE2 polymer 1 1 77 ? ? ? PRD_001233 H30 H30 H 0 1 N N N 68.406 -2.814 -10.978 0.703 2.183 -4.566 PHE 6 HZ polymer 1 1 78 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_001233 SE1 C3 SING N N 1 PRD_001233 C3 C2 DOUB N Z 2 PRD_001233 N1 C2 SING N N 3 PRD_001233 C2 C1 SING N N 4 PRD_001233 C1 O1 DOUB N N 5 PRD_001233 C3 H1 SING N N 6 PRD_001233 N2 C4 SING N N 7 PRD_001233 N2 H2 SING N N 8 PRD_001233 C4 C5 SING N N 9 PRD_001233 C4 C6 SING N N 10 PRD_001233 C4 H3 SING N N 11 PRD_001233 C6 C7 SING N N 12 PRD_001233 C6 H4 SING N N 13 PRD_001233 C6 H5 SING N N 14 PRD_001233 C7 C8 DOUB Y N 15 PRD_001233 C7 C9 SING Y N 16 PRD_001233 C8 C10 SING Y N 17 PRD_001233 C8 H6 SING N N 18 PRD_001233 C9 C11 DOUB Y N 19 PRD_001233 C9 H7 SING N N 20 PRD_001233 C10 C12 DOUB Y N 21 PRD_001233 C10 H8 SING N N 22 PRD_001233 C11 C12 SING Y N 23 PRD_001233 C11 H9 SING N N 24 PRD_001233 C12 H10 SING N N 25 PRD_001233 SE2 C15 SING N N 26 PRD_001233 C15 C14 DOUB N Z 27 PRD_001233 N3 C14 SING N N 28 PRD_001233 C14 C13 SING N N 29 PRD_001233 C13 O2 DOUB N N 30 PRD_001233 C15 H11 SING N N 31 PRD_001233 N4 C16 SING N N 32 PRD_001233 N4 H12 SING N N 33 PRD_001233 C16 C17 SING N N 34 PRD_001233 C16 C18 SING N N 35 PRD_001233 C16 H13 SING N N 36 PRD_001233 C18 C19 SING N N 37 PRD_001233 C18 H14 SING N N 38 PRD_001233 C18 H15 SING N N 39 PRD_001233 C19 C20 DOUB Y N 40 PRD_001233 C19 C21 SING Y N 41 PRD_001233 C20 C22 SING Y N 42 PRD_001233 C20 H16 SING N N 43 PRD_001233 C21 C23 DOUB Y N 44 PRD_001233 C21 H17 SING N N 45 PRD_001233 C22 C24 DOUB Y N 46 PRD_001233 C22 H18 SING N N 47 PRD_001233 C23 C24 SING Y N 48 PRD_001233 C23 H19 SING N N 49 PRD_001233 C24 H20 SING N N 50 PRD_001233 SE3 C27 SING N N 51 PRD_001233 C27 C26 DOUB N Z 52 PRD_001233 N5 C26 SING N N 53 PRD_001233 C26 C25 SING N N 54 PRD_001233 C25 O3 DOUB N N 55 PRD_001233 C27 H21 SING N N 56 PRD_001233 N6 C28 SING N N 57 PRD_001233 N6 H22 SING N N 58 PRD_001233 C28 C29 SING N N 59 PRD_001233 C28 C30 SING N N 60 PRD_001233 C28 H23 SING N N 61 PRD_001233 C30 C31 SING N N 62 PRD_001233 C30 H24 SING N N 63 PRD_001233 C30 H25 SING N N 64 PRD_001233 C31 C32 DOUB Y N 65 PRD_001233 C31 C33 SING Y N 66 PRD_001233 C32 C34 SING Y N 67 PRD_001233 C32 H26 SING N N 68 PRD_001233 C33 C35 DOUB Y N 69 PRD_001233 C33 H27 SING N N 70 PRD_001233 C34 C36 DOUB Y N 71 PRD_001233 C34 H28 SING N N 72 PRD_001233 C35 C36 SING Y N 73 PRD_001233 C35 H29 SING N N 74 PRD_001233 C36 H30 SING N N 75 PRD_001233 C1 N2 SING N N 76 PRD_001233 SE1 C29 SING N N 77 PRD_001233 N1 C29 DOUB N N 78 PRD_001233 C5 SE2 SING N N 79 PRD_001233 C5 N3 DOUB N N 80 PRD_001233 C13 N4 SING N N 81 PRD_001233 C17 N5 DOUB N N 82 PRD_001233 C17 SE3 SING N N 83 PRD_001233 C25 N6 SING N N 84 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_001233 SMILES ACDLabs 12.01 "O=C3NC(c1[se]cc(n1)C(=O)NC(c5nc(C(=O)NC(c2[se]cc3n2)Cc4ccccc4)c[se]5)Cc6ccccc6)Cc7ccccc7" PRD_001233 InChI InChI 1.03 "InChI=1S/C36H30N6O3Se3/c43-31-28-20-47-35(41-28)26(17-23-12-6-2-7-13-23)39-33(45)30-21-48-36(42-30)27(18-24-14-8-3-9-15-24)38-32(44)29-19-46-34(40-29)25(37-31)16-22-10-4-1-5-11-22/h1-15,19-21,25-27H,16-18H2,(H,37,43)(H,38,44)(H,39,45)" PRD_001233 InChIKey InChI 1.03 XSSCGBVAFIDWJW-UHFFFAOYSA-N PRD_001233 SMILES_CANONICAL CACTVS 3.385 "O=C1N[C@@H](Cc2ccccc2)c3[se]cc(n3)C(=O)N[C@@H](Cc4ccccc4)c5[se]cc(n5)C(=O)N[C@@H](Cc6ccccc6)c7[se]cc1n7" PRD_001233 SMILES CACTVS 3.385 "O=C1N[CH](Cc2ccccc2)c3[se]cc(n3)C(=O)N[CH](Cc4ccccc4)c5[se]cc(n5)C(=O)N[CH](Cc6ccccc6)c7[se]cc1n7" PRD_001233 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)C[C@H]2c3nc(c[se]3)C(=O)N[C@H](c4nc(c[se]4)C(=O)N[C@H](c5nc(c[se]5)C(=O)N2)Cc6ccccc6)Cc7ccccc7" PRD_001233 SMILES "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)CC2c3nc(c[se]3)C(=O)NC(c4nc(c[se]4)C(=O)NC(c5nc(c[se]5)C(=O)N2)Cc6ccccc6)Cc7ccccc7" # _pdbx_chem_comp_identifier.comp_id PRD_001233 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 12.01 _pdbx_chem_comp_identifier.identifier "(4R,11R,18S)-4,11,18-tribenzyl-6,13,20-triselena-3,10,17,22,23,24-hexaazatetracyclo[17.2.1.1~5,8~.1~12,15~]tetracosa-1(21),5(24),7,12(23),14,19(22)-hexaene-2,9,16-trione" #