data_PRDCC_001235 # _chem_comp.id PRD_001235 _chem_comp.name cyclic-tris-valinylselenazole _chem_comp.formula "C24 H30 N6 O3 Se3" _chem_comp.formula_weight 687.413 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_001235 C1 C1 C 0 1 N N N 69.114 1.276 -3.134 -3.440 -1.286 -0.403 30F 1 C polymer 1 1 1 ? ? ? PRD_001235 C2 C2 C 0 1 N N N 70.037 1.896 -4.094 -2.699 -2.557 -0.299 30F 1 CA polymer 1 1 2 ? ? ? PRD_001235 C3 C3 C 0 1 N N N 71.118 2.664 -3.863 -3.414 -3.701 -0.126 30F 1 C09 polymer 1 1 3 ? ? ? PRD_001235 O1 O1 O 0 1 N N N 69.368 1.170 -1.930 -4.655 -1.289 -0.347 30F 1 O polymer 1 1 4 ? ? ? PRD_001235 SE1 SE1 SE 0 0 N N N 72.019 3.221 -5.431 -1.940 -5.028 -0.058 30F 1 SE2 polymer 1 1 5 ? ? ? PRD_001235 N1 N1 N 0 1 N N N 69.773 1.635 -5.416 -1.363 -2.544 -0.381 30F 1 N polymer 1 1 6 ? ? ? PRD_001235 N2 N2 N 0 1 N N N 67.915 0.809 -3.700 -2.774 -0.110 -0.556 VAL 2 N polymer 1 1 7 ? ? ? PRD_001235 C4 C4 C 0 1 N N S 66.815 0.129 -3.072 -3.619 1.091 -0.705 VAL 2 CA polymer 1 1 8 ? ? ? PRD_001235 C5 C5 C 0 1 N N N 67.439 -1.197 -3.484 -2.797 2.324 -0.440 VAL 2 C polymer 1 1 9 ? ? ? PRD_001235 C6 C6 C 0 1 N N N 65.397 0.563 -3.574 -4.777 1.026 0.294 VAL 2 CB polymer 1 1 10 ? ? ? PRD_001235 C7 C7 C 0 1 N N N 64.762 0.007 -4.870 -4.219 0.963 1.717 VAL 2 CG1 polymer 1 1 11 ? ? ? PRD_001235 C8 C8 C 0 1 N N N 64.367 0.558 -2.447 -5.651 2.273 0.143 VAL 2 CG2 polymer 1 1 12 ? ? ? PRD_001235 C9 C9 C 0 1 N N N 68.262 -3.709 -6.118 0.609 3.646 -0.160 30F 3 C polymer 1 1 13 ? ? ? PRD_001235 C10 C10 C 0 1 N N N 68.176 -2.996 -4.825 -0.866 3.628 -0.163 30F 3 CA polymer 1 1 14 ? ? ? PRD_001235 C11 C11 C 0 1 N N N 68.667 -3.438 -3.651 -1.520 4.797 0.075 30F 3 C09 polymer 1 1 15 ? ? ? PRD_001235 O2 O2 O 0 1 N N N 68.033 -4.927 -6.244 1.198 4.690 0.041 30F 3 O polymer 1 1 16 ? ? ? PRD_001235 SE2 SE2 SE 0 0 N N N 68.331 -2.259 -2.205 -3.401 4.176 -0.052 30F 3 SE2 polymer 1 1 17 ? ? ? PRD_001235 N3 N3 N 0 1 N N N 67.491 -1.765 -4.772 -1.505 2.477 -0.401 30F 3 N polymer 1 1 18 ? ? ? PRD_001235 N4 N4 N 0 1 N N N 68.561 -2.918 -7.261 1.315 2.504 -0.379 VAL 4 N polymer 1 1 19 ? ? ? PRD_001235 C12 C12 C 0 1 N N S 68.630 -3.333 -8.672 2.783 2.655 -0.395 VAL 4 CA polymer 1 1 20 ? ? ? PRD_001235 C13 C13 C 0 1 N N N 70.003 -2.864 -9.098 3.440 1.301 -0.365 VAL 4 C polymer 1 1 21 ? ? ? PRD_001235 C14 C14 C 0 1 N N N 67.365 -2.703 -9.368 3.224 3.461 0.828 VAL 4 CB polymer 1 1 22 ? ? ? PRD_001235 C15 C15 C 0 1 N N N 67.503 -1.228 -9.787 2.912 2.669 2.100 VAL 4 CG1 polymer 1 1 23 ? ? ? PRD_001235 C16 C16 C 0 1 N N N 66.147 -2.684 -8.409 4.728 3.727 0.748 VAL 4 CG2 polymer 1 1 24 ? ? ? PRD_001235 C17 C17 C 0 1 N N N 71.913 0.189 -8.999 2.870 -2.319 -0.346 30F 5 C polymer 1 1 25 ? ? ? PRD_001235 C18 C18 C 0 1 N N N 71.609 -1.199 -9.238 3.599 -1.040 -0.340 30F 5 CA polymer 1 1 26 ? ? ? PRD_001235 C19 C19 C 0 1 N N N 72.283 -2.160 -9.871 4.960 -1.087 -0.310 30F 5 C09 polymer 1 1 27 ? ? ? PRD_001235 O3 O3 O 0 1 N N N 72.890 0.777 -9.469 3.494 -3.362 -0.332 30F 5 O polymer 1 1 28 ? ? ? PRD_001235 SE3 SE3 SE 0 0 N N N 71.356 -3.821 -10.002 5.375 0.853 -0.312 30F 5 SE2 polymer 1 1 29 ? ? ? PRD_001235 N5 N5 N 0 1 N N N 70.340 -1.558 -8.842 2.916 0.109 -0.365 30F 5 N polymer 1 1 30 ? ? ? PRD_001235 N6 N6 N 0 1 N N N 70.833 0.718 -8.234 1.512 -2.352 -0.364 VAL 6 N polymer 1 1 31 ? ? ? PRD_001235 C20 C20 C 0 1 N N S 70.569 2.070 -7.790 0.908 -3.699 -0.390 VAL 6 CA polymer 1 1 32 ? ? ? PRD_001235 C21 C21 C 0 1 N N N 70.654 2.238 -6.288 -0.592 -3.590 -0.308 VAL 6 C polymer 1 1 33 ? ? ? PRD_001235 C22 C22 C 0 1 N N N 69.144 2.112 -8.540 1.424 -4.510 0.800 VAL 6 CB polymer 1 1 34 ? ? ? PRD_001235 C23 C23 C 0 1 N N N 67.798 2.245 -7.753 0.878 -3.915 2.099 VAL 6 CG1 polymer 1 1 35 ? ? ? PRD_001235 C24 C24 C 0 1 N N N 69.178 2.794 -9.963 0.957 -5.962 0.669 VAL 6 CG2 polymer 1 1 36 ? ? ? PRD_001235 H1 H1 H 0 1 N N N 71.443 2.938 -2.870 -4.482 -3.846 -0.048 30F 1 H13 polymer 1 1 37 ? ? ? PRD_001235 H2 H2 H 0 1 N N N 67.812 0.974 -4.681 -1.805 -0.064 -0.566 VAL 2 H polymer 1 1 38 ? ? ? PRD_001235 H3 H3 H 0 1 N N N 66.859 0.236 -1.978 -4.017 1.131 -1.719 VAL 2 HA polymer 1 1 39 ? ? ? PRD_001235 H4 H4 H 0 1 N N N 65.528 1.632 -3.796 -5.376 0.137 0.099 VAL 2 HB polymer 1 1 40 ? ? ? PRD_001235 H5 H5 H 0 0 N N N 63.768 0.456 -5.014 -3.701 1.894 1.946 VAL 2 HG11 polymer 1 1 41 ? ? ? PRD_001235 H6 H6 H 0 0 N N N 65.404 0.254 -5.728 -5.038 0.820 2.422 VAL 2 HG12 polymer 1 1 42 ? ? ? PRD_001235 H7 H7 H 0 0 N N N 64.662 -1.085 -4.790 -3.522 0.129 1.798 VAL 2 HG13 polymer 1 1 43 ? ? ? PRD_001235 H8 H8 H 0 0 N N N 63.388 0.868 -2.842 -5.716 2.546 -0.910 VAL 2 HG21 polymer 1 1 44 ? ? ? PRD_001235 H9 H9 H 0 0 N N N 64.288 -0.456 -2.027 -6.649 2.065 0.528 VAL 2 HG22 polymer 1 1 45 ? ? ? PRD_001235 H10 H10 H 0 0 N N N 64.682 1.258 -1.659 -5.209 3.096 0.705 VAL 2 HG23 polymer 1 1 46 ? ? ? PRD_001235 H11 H11 H 0 1 N N N 69.199 -4.372 -3.544 -1.127 5.783 0.276 30F 3 H13 polymer 1 1 47 ? ? ? PRD_001235 H12 H12 H 0 1 N N N 68.749 -1.952 -7.083 0.882 1.647 -0.516 VAL 4 H polymer 1 1 48 ? ? ? PRD_001235 H13 H13 H 0 1 N N N 68.571 -4.429 -8.750 3.082 3.182 -1.301 VAL 4 HA polymer 1 1 49 ? ? ? PRD_001235 H14 H14 H 0 1 N N N 67.114 -3.306 -10.253 2.687 4.410 0.850 VAL 4 HB polymer 1 1 50 ? ? ? PRD_001235 H15 H15 H 0 0 N N N 66.568 -0.892 -10.260 3.521 1.765 2.123 VAL 4 HG11 polymer 1 1 51 ? ? ? PRD_001235 H16 H16 H 0 0 N N N 67.707 -0.612 -8.899 3.138 3.281 2.973 VAL 4 HG12 polymer 1 1 52 ? ? ? PRD_001235 H17 H17 H 0 0 N N N 68.333 -1.126 -10.502 1.857 2.397 2.109 VAL 4 HG13 polymer 1 1 53 ? ? ? PRD_001235 H18 H18 H 0 0 N N N 65.282 -2.239 -8.923 4.990 4.029 -0.266 VAL 4 HG21 polymer 1 1 54 ? ? ? PRD_001235 H19 H19 H 0 0 N N N 65.904 -3.713 -8.105 4.994 4.523 1.444 VAL 4 HG22 polymer 1 1 55 ? ? ? PRD_001235 H20 H20 H 0 0 N N N 66.391 -2.086 -7.518 5.272 2.819 1.009 VAL 4 HG23 polymer 1 1 56 ? ? ? PRD_001235 H21 H21 H 0 1 N N N 73.273 -2.010 -10.276 5.624 -1.938 -0.288 30F 5 H13 polymer 1 1 57 ? ? ? PRD_001235 H22 H22 H 0 1 N N N 70.146 0.046 -7.959 0.974 -1.544 -0.357 VAL 6 H polymer 1 1 58 ? ? ? PRD_001235 H23 H23 H 0 1 N N N 71.246 2.782 -8.284 1.184 -4.202 -1.317 VAL 6 HA polymer 1 1 59 ? ? ? PRD_001235 H24 H24 H 0 1 N N N 69.073 1.058 -8.846 2.513 -4.479 0.816 VAL 6 HB polymer 1 1 60 ? ? ? PRD_001235 H25 H25 H 0 0 N N N 66.957 2.253 -8.462 1.325 -4.428 2.950 VAL 6 HG11 polymer 1 1 61 ? ? ? PRD_001235 H26 H26 H 0 0 N N N 67.690 1.393 -7.066 1.125 -2.854 2.144 VAL 6 HG12 polymer 1 1 62 ? ? ? PRD_001235 H27 H27 H 0 0 N N N 67.801 3.182 -7.177 -0.205 -4.037 2.128 VAL 6 HG13 polymer 1 1 63 ? ? ? PRD_001235 H28 H28 H 0 0 N N N 68.169 2.780 -10.401 1.183 -6.326 -0.333 VAL 6 HG21 polymer 1 1 64 ? ? ? PRD_001235 H29 H29 H 0 0 N N N 69.519 3.835 -9.863 1.474 -6.577 1.405 VAL 6 HG22 polymer 1 1 65 ? ? ? PRD_001235 H30 H30 H 0 0 N N N 69.870 2.243 -10.617 -0.118 -6.015 0.841 VAL 6 HG23 polymer 1 1 66 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_001235 SE1 C3 SING N N 1 PRD_001235 C3 C2 DOUB N Z 2 PRD_001235 N1 C2 SING N N 3 PRD_001235 C2 C1 SING N N 4 PRD_001235 C1 O1 DOUB N N 5 PRD_001235 C3 H1 SING N N 6 PRD_001235 N2 C4 SING N N 7 PRD_001235 N2 H2 SING N N 8 PRD_001235 C4 C5 SING N N 9 PRD_001235 C4 C6 SING N N 10 PRD_001235 C4 H3 SING N N 11 PRD_001235 C6 C7 SING N N 12 PRD_001235 C6 C8 SING N N 13 PRD_001235 C6 H4 SING N N 14 PRD_001235 C7 H5 SING N N 15 PRD_001235 C7 H6 SING N N 16 PRD_001235 C7 H7 SING N N 17 PRD_001235 C8 H8 SING N N 18 PRD_001235 C8 H9 SING N N 19 PRD_001235 C8 H10 SING N N 20 PRD_001235 SE2 C11 SING N N 21 PRD_001235 C11 C10 DOUB N Z 22 PRD_001235 N3 C10 SING N N 23 PRD_001235 C10 C9 SING N N 24 PRD_001235 C9 O2 DOUB N N 25 PRD_001235 C11 H11 SING N N 26 PRD_001235 N4 C12 SING N N 27 PRD_001235 N4 H12 SING N N 28 PRD_001235 C12 C13 SING N N 29 PRD_001235 C12 C14 SING N N 30 PRD_001235 C12 H13 SING N N 31 PRD_001235 C14 C15 SING N N 32 PRD_001235 C14 C16 SING N N 33 PRD_001235 C14 H14 SING N N 34 PRD_001235 C15 H15 SING N N 35 PRD_001235 C15 H16 SING N N 36 PRD_001235 C15 H17 SING N N 37 PRD_001235 C16 H18 SING N N 38 PRD_001235 C16 H19 SING N N 39 PRD_001235 C16 H20 SING N N 40 PRD_001235 SE3 C19 SING N N 41 PRD_001235 C19 C18 DOUB N Z 42 PRD_001235 N5 C18 SING N N 43 PRD_001235 C18 C17 SING N N 44 PRD_001235 C17 O3 DOUB N N 45 PRD_001235 C19 H21 SING N N 46 PRD_001235 N6 C20 SING N N 47 PRD_001235 N6 H22 SING N N 48 PRD_001235 C20 C21 SING N N 49 PRD_001235 C20 C22 SING N N 50 PRD_001235 C20 H23 SING N N 51 PRD_001235 C22 C23 SING N N 52 PRD_001235 C22 C24 SING N N 53 PRD_001235 C22 H24 SING N N 54 PRD_001235 C23 H25 SING N N 55 PRD_001235 C23 H26 SING N N 56 PRD_001235 C23 H27 SING N N 57 PRD_001235 C24 H28 SING N N 58 PRD_001235 C24 H29 SING N N 59 PRD_001235 C24 H30 SING N N 60 PRD_001235 C1 N2 SING N N 61 PRD_001235 SE1 C21 SING N N 62 PRD_001235 N1 C21 DOUB N N 63 PRD_001235 C5 N3 DOUB N N 64 PRD_001235 C5 SE2 SING N N 65 PRD_001235 C9 N4 SING N N 66 PRD_001235 C13 SE3 SING N N 67 PRD_001235 C13 N5 DOUB N N 68 PRD_001235 C17 N6 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_001235 SMILES ACDLabs 12.01 "O=C3NC(c1[se]cc(n1)C(=O)NC(c4nc(C(=O)NC(c2[se]cc3n2)C(C)C)c[se]4)C(C)C)C(C)C" PRD_001235 InChI InChI 1.03 "InChI=1S/C24H30N6O3Se3/c1-10(2)16-22-25-14(7-34-22)20(32)29-18(12(5)6)24-27-15(9-36-24)21(33)30-17(11(3)4)23-26-13(8-35-23)19(31)28-16/h7-12,16-18H,1-6H3,(H,28,31)(H,29,32)(H,30,33)" PRD_001235 InChIKey InChI 1.03 FWRNUSMIPQTUHH-UHFFFAOYSA-N PRD_001235 SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@@H]1NC(=O)c2c[se]c(n2)[C@@H](NC(=O)c3c[se]c(n3)[C@@H](NC(=O)c4c[se]c1n4)C(C)C)C(C)C" PRD_001235 SMILES CACTVS 3.385 "CC(C)[CH]1NC(=O)c2c[se]c(n2)[CH](NC(=O)c3c[se]c(n3)[CH](NC(=O)c4c[se]c1n4)C(C)C)C(C)C" PRD_001235 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)[C@H]1c2nc(c[se]2)C(=O)N[C@H](c3nc(c[se]3)C(=O)N[C@H](c4nc(c[se]4)C(=O)N1)C(C)C)C(C)C" PRD_001235 SMILES "OpenEye OEToolkits" 1.7.6 "CC(C)C1c2nc(c[se]2)C(=O)NC(c3nc(c[se]3)C(=O)NC(c4nc(c[se]4)C(=O)N1)C(C)C)C(C)C" # _pdbx_chem_comp_identifier.comp_id PRD_001235 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 12.01 _pdbx_chem_comp_identifier.identifier "(4R,11S,18S)-4,11,18-tri(propan-2-yl)-6,13,20-triselena-3,10,17,22,23,24-hexaazatetracyclo[17.2.1.1~5,8~.1~12,15~]tetracosa-1(21),5(24),7,12(23),14,19(22)-hexaene-2,9,16-trione" #