data_PRDCC_002268 # _chem_comp.id PRD_002268 _chem_comp.name "Lipid II" _chem_comp.formula "C54 H91 N8 O26 P2" _chem_comp.formula_weight 1330.286 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_002268 N1 N1 N 0 1 N N N -14.737 -12.416 5.566 ? ? ? ALA 1 N polymer 1 1 1 ? ? ? PRD_002268 C1 C1 C 0 1 N N S -16.083 -12.408 6.218 ? ? ? ALA 1 CA polymer 1 1 2 ? ? ? PRD_002268 C2 C2 C 0 1 N N N -17.166 -11.716 5.321 ? ? ? ALA 1 C polymer 1 1 3 ? ? ? PRD_002268 O1 O1 O 0 1 N N N -17.694 -12.293 4.375 ? ? ? ALA 1 O polymer 1 1 4 ? ? ? PRD_002268 C3 C3 C 0 1 N N N -15.996 -11.671 7.510 ? ? ? ALA 1 CB polymer 1 1 5 ? ? ? PRD_002268 N2 N2 N 0 1 N N N -17.611 -10.486 5.816 ? ? ? DGL 2 N polymer 1 1 6 ? ? ? PRD_002268 C4 C4 C 0 1 N N R -18.601 -9.700 4.955 ? ? ? DGL 2 CA polymer 1 1 7 ? ? ? PRD_002268 C5 C5 C 0 1 N N N -18.396 -9.908 3.414 ? ? ? DGL 2 C polymer 1 1 8 ? ? ? PRD_002268 O2 O2 O 0 1 N N N -17.194 -9.708 3.027 ? ? ? DGL 2 O polymer 1 1 9 ? ? ? PRD_002268 C6 C6 C 0 1 N N N -19.952 -10.265 5.015 ? ? ? DGL 2 CB polymer 1 1 10 ? ? ? PRD_002268 C7 C7 C 0 1 N N N -20.088 -11.699 5.650 ? ? ? DGL 2 CG polymer 1 1 11 ? ? ? PRD_002268 C8 C8 C 0 1 N N N -20.835 -12.651 4.712 ? ? ? DGL 2 CD polymer 1 1 12 ? ? ? PRD_002268 O3 O3 O 0 1 N N N -21.541 -13.549 5.174 ? ? ? DGL 2 OE1 polymer 1 1 13 ? ? ? PRD_002268 O4 O4 O 0 1 N Y N ? ? ? ? ? ? DGL 2 OXT polymer 1 1 14 ? ? ? PRD_002268 N3 N3 N 0 1 N N N -20.675 -12.451 3.429 ? ? ? LYS 3 N polymer 1 1 15 ? ? ? PRD_002268 C9 C9 C 0 1 N N S -21.291 -13.262 2.412 ? ? ? LYS 3 CA polymer 1 1 16 ? ? ? PRD_002268 C10 C10 C 0 1 N N N -22.835 -13.156 2.379 ? ? ? LYS 3 C polymer 1 1 17 ? ? ? PRD_002268 O5 O5 O 0 1 N N N -23.562 -14.129 2.054 ? ? ? LYS 3 O polymer 1 1 18 ? ? ? PRD_002268 C11 C11 C 0 1 N N N -20.668 -14.662 2.409 ? ? ? LYS 3 CB polymer 1 1 19 ? ? ? PRD_002268 C12 C12 C 0 1 N N N -19.569 -14.718 1.318 ? ? ? LYS 3 CG polymer 1 1 20 ? ? ? PRD_002268 C13 C13 C 0 1 N N N -19.946 -14.119 -0.077 ? ? ? LYS 3 CD polymer 1 1 21 ? ? ? PRD_002268 C14 C14 C 0 1 N N N -19.448 -12.639 -0.420 ? ? ? LYS 3 CE polymer 1 1 22 ? ? ? PRD_002268 N4 N4 N 1 1 N N N -19.820 -11.290 0.204 ? ? ? LYS 3 NZ polymer 1 1 23 ? ? ? PRD_002268 N5 N5 N 0 1 N N N -23.219 -11.906 2.876 ? ? ? DAL 4 N polymer 1 1 24 ? ? ? PRD_002268 C15 C15 C 0 1 N N R -24.669 -11.234 2.988 ? ? ? DAL 4 CA polymer 1 1 25 ? ? ? PRD_002268 C16 C16 C 0 1 N N N -25.955 -12.108 3.615 ? ? ? DAL 4 CB polymer 1 1 26 ? ? ? PRD_002268 C17 C17 C 0 1 N N N -24.617 -10.286 1.608 ? ? ? DAL 4 C polymer 1 1 27 ? ? ? PRD_002268 O6 O6 O 0 1 N N N -25.383 -10.420 0.677 ? ? ? DAL 4 O polymer 1 1 28 ? ? ? PRD_002268 N6 N6 N 0 1 N N N -23.571 -9.381 1.603 ? ? ? DAL 5 N polymer 1 1 29 ? ? ? PRD_002268 C18 C18 C 0 1 N N R -23.253 -8.300 0.509 ? ? ? DAL 5 CA polymer 1 1 30 ? ? ? PRD_002268 C19 C19 C 0 1 N N N -24.666 -7.599 0.376 ? ? ? DAL 5 CB polymer 1 1 31 ? ? ? PRD_002268 C20 C20 C 0 1 N N N -22.749 -9.123 -0.799 ? ? ? DAL 5 C polymer 1 1 32 ? ? ? PRD_002268 O7 O7 O 0 1 N N N -21.942 -9.999 -0.526 ? ? ? DAL 5 O polymer 1 1 33 ? ? ? PRD_002268 O8 O8 O 0 1 N Y N -23.072 -8.810 -2.040 ? ? ? DAL 5 OXT polymer 1 1 34 ? ? ? PRD_002268 C21 C21 C 0 1 N N S -11.185 -8.960 5.129 ? ? ? MUB 1 C1 polymer 2 2 35 ? ? ? PRD_002268 C22 C22 C 0 1 N N R -10.944 -10.437 4.813 ? ? ? MUB 1 C2 polymer 2 2 36 ? ? ? PRD_002268 C23 C23 C 0 1 N N R -12.104 -10.962 3.959 ? ? ? MUB 1 C3 polymer 2 2 37 ? ? ? PRD_002268 C24 C24 C 0 1 N N S -13.419 -10.224 4.280 ? ? ? MUB 1 C4 polymer 2 2 38 ? ? ? PRD_002268 C25 C25 C 0 1 N N R -13.278 -8.750 3.913 ? ? ? MUB 1 C5 polymer 2 2 39 ? ? ? PRD_002268 C26 C26 C 0 1 N N N -14.151 -7.885 4.806 ? ? ? MUB 1 C6 polymer 2 2 40 ? ? ? PRD_002268 C27 C27 C 0 1 N N N -9.607 -10.559 2.819 ? ? ? MUB 1 C7 polymer 2 2 41 ? ? ? PRD_002268 C28 C28 C 0 1 N N N -8.305 -10.762 2.124 ? ? ? MUB 1 C8 polymer 2 2 42 ? ? ? PRD_002268 C29 C29 C 0 1 N N R -12.267 -12.796 5.483 ? ? ? MUB 1 C9 polymer 2 2 43 ? ? ? PRD_002268 C30 C30 C 0 1 N N N -13.624 -12.894 6.209 ? ? ? MUB 1 C10 polymer 2 2 44 ? ? ? PRD_002268 C31 C31 C 0 1 N N N -10.946 -13.305 6.161 ? ? ? MUB 1 C11 polymer 2 2 45 ? ? ? PRD_002268 O9 O9 O 0 1 N Y N -9.968 -8.314 5.289 ? ? ? MUB 1 O1 polymer 2 2 46 ? ? ? PRD_002268 O10 O10 O 0 1 N N N -12.236 -12.388 4.099 ? ? ? MUB 1 O3 polymer 2 2 47 ? ? ? PRD_002268 O11 O11 O 0 1 N N N -14.528 -10.858 3.572 ? ? ? MUB 1 O4 polymer 2 2 48 ? ? ? PRD_002268 O12 O12 O 0 1 N N N -11.897 -8.307 4.050 ? ? ? MUB 1 O5 polymer 2 2 49 ? ? ? PRD_002268 O13 O13 O 0 1 N N N -15.505 -8.293 4.750 ? ? ? MUB 1 O6 polymer 2 2 50 ? ? ? PRD_002268 O14 O14 O 0 1 N N N -10.611 -10.327 2.151 ? ? ? MUB 1 O7 polymer 2 2 51 ? ? ? PRD_002268 O15 O15 O 0 1 N N N -13.693 -13.490 7.263 ? ? ? MUB 1 O10 polymer 2 2 52 ? ? ? PRD_002268 N7 N7 N 0 1 N N N -9.665 -10.634 4.141 ? ? ? MUB 1 N2 polymer 2 2 53 ? ? ? PRD_002268 C32 C32 C 0 1 N N R -14.279 -11.170 2.193 ? ? ? NAG 2 C1 polymer 2 2 54 ? ? ? PRD_002268 C33 C33 C 0 1 N N R -15.552 -11.652 1.563 ? ? ? NAG 2 C2 polymer 2 2 55 ? ? ? PRD_002268 C34 C34 C 0 1 N N R -15.295 -12.025 0.123 ? ? ? NAG 2 C3 polymer 2 2 56 ? ? ? PRD_002268 C35 C35 C 0 1 N N S -14.611 -10.860 -0.610 ? ? ? NAG 2 C4 polymer 2 2 57 ? ? ? PRD_002268 C36 C36 C 0 1 N N R -13.389 -10.355 0.166 ? ? ? NAG 2 C5 polymer 2 2 58 ? ? ? PRD_002268 C37 C37 C 0 1 N N N -12.774 -9.117 -0.476 ? ? ? NAG 2 C6 polymer 2 2 59 ? ? ? PRD_002268 C38 C38 C 0 1 N N N -15.401 -13.932 2.425 ? ? ? NAG 2 C7 polymer 2 2 60 ? ? ? PRD_002268 C39 C39 C 0 1 N N N -16.026 -15.055 3.231 ? ? ? NAG 2 C8 polymer 2 2 61 ? ? ? PRD_002268 N8 N8 N 0 1 N N N -16.081 -12.786 2.305 ? ? ? NAG 2 N2 polymer 2 2 62 ? ? ? PRD_002268 O16 O16 O 0 1 N N N -16.533 -12.328 -0.497 ? ? ? NAG 2 O3 polymer 2 2 63 ? ? ? PRD_002268 O17 O17 O 0 1 N N N -14.201 -11.296 -1.899 ? ? ? NAG 2 O4 polymer 2 2 64 ? ? ? PRD_002268 O18 O18 O 0 1 N N N -13.770 -10.027 1.507 ? ? ? NAG 2 O5 polymer 2 2 65 ? ? ? PRD_002268 O19 O19 O 0 1 N N N -11.654 -8.652 0.262 ? ? ? NAG 2 O6 polymer 2 2 66 ? ? ? PRD_002268 O20 O20 O 0 1 N N N -14.359 -14.150 1.810 ? ? ? NAG 2 O7 polymer 2 2 67 ? ? ? PRD_002268 P1 P1 P 0 1 N N N -9.441 -7.703 6.712 ? ? ? 2PO 3 P non-polymer 3 3 68 ? ? ? PRD_002268 O21 O21 O -1 1 N N N -10.213 -8.238 7.857 ? ? ? 2PO 3 O1P non-polymer 3 3 69 ? ? ? PRD_002268 O22 O22 O -1 1 N N N -7.958 -7.815 6.776 ? ? ? 2PO 3 O2P non-polymer 3 3 70 ? ? ? PRD_002268 O23 O23 O 0 1 N N N -9.807 -6.157 6.565 ? ? ? 2PO 3 O3P non-polymer 3 3 71 ? ? ? PRD_002268 P2 P2 P 0 1 N N N -9.247 -5.349 5.302 ? ? ? 2PO 4 P non-polymer 3 4 72 ? ? ? PRD_002268 O24 O24 O -1 1 N N N -9.537 -3.912 5.504 ? ? ? 2PO 4 O1P non-polymer 3 4 73 ? ? ? PRD_002268 O25 O25 O -1 1 N N N -7.853 -5.785 5.055 ? ? ? 2PO 4 O2P non-polymer 3 4 74 ? ? ? PRD_002268 O26 O26 O 0 1 N N N -10.149 -5.884 4.101 ? ? ? 2PO 4 O3P non-polymer 3 4 75 ? ? ? PRD_002268 C40 C40 C 0 1 N N N -9.533 -6.337 2.899 ? ? ? P1W 5 C1 non-polymer 4 5 76 ? ? ? PRD_002268 C41 C41 C 0 1 N N N -10.012 -5.473 1.747 ? ? ? P1W 5 C2 non-polymer 4 5 77 ? ? ? PRD_002268 C42 C42 C 0 1 N N N -11.270 -5.344 1.359 ? ? ? P1W 5 C3 non-polymer 4 5 78 ? ? ? PRD_002268 C43 C43 C 0 1 N N N -11.626 -4.436 0.199 ? ? ? P1W 5 C4 non-polymer 4 5 79 ? ? ? PRD_002268 C44 C44 C 0 1 N N N -12.434 -6.055 2.039 ? ? ? P1W 5 C5 non-polymer 4 5 80 ? ? ? PRD_002268 C45 C45 C 0 1 N N N -11.428 -5.106 -1.158 ? ? ? P1W 6 C1 non-polymer 4 6 81 ? ? ? PRD_002268 C46 C46 C 0 1 N N N -12.745 -5.220 -1.865 ? ? ? P1W 6 C2 non-polymer 4 6 82 ? ? ? PRD_002268 C47 C47 C 0 1 N N N -12.896 -4.962 -3.163 ? ? ? P1W 6 C3 non-polymer 4 6 83 ? ? ? PRD_002268 C48 C48 C 0 1 N N N -14.224 -5.042 -3.881 ? ? ? P1W 6 C4 non-polymer 4 6 84 ? ? ? PRD_002268 C49 C49 C 0 1 N N N -11.729 -4.594 -4.085 ? ? ? P1W 6 C5 non-polymer 4 6 85 ? ? ? PRD_002268 C50 C50 C 0 1 N N N -14.846 -3.652 -4.062 ? ? ? P1W 7 C1 non-polymer 4 7 86 ? ? ? PRD_002268 C51 C51 C 0 1 N N N -15.765 -3.317 -2.923 ? ? ? P1W 7 C2 non-polymer 4 7 87 ? ? ? PRD_002268 C52 C52 C 0 1 N N N -17.039 -2.905 -3.045 ? ? ? P1W 7 C3 non-polymer 4 7 88 ? ? ? PRD_002268 C53 C53 C 0 1 N N N -17.931 -2.595 -1.832 ? ? ? P1W 7 C4 non-polymer 4 7 89 ? ? ? PRD_002268 C54 C54 C 0 1 N N N -17.733 -2.698 -4.390 ? ? ? P1W 7 C5 non-polymer 4 7 90 ? ? ? PRD_002268 H1 H1 H 0 1 N N N -14.646 -12.063 4.635 ? ? ? ALA 1 H polymer 1 1 91 ? ? ? PRD_002268 H2 H2 H 0 1 N N N -16.401 -13.444 6.409 ? ? ? ALA 1 HA polymer 1 1 92 ? ? ? PRD_002268 H3 H3 H 0 1 N N N -16.983 -11.662 7.995 ? ? ? ALA 1 HB1 polymer 1 1 93 ? ? ? PRD_002268 H4 H4 H 0 1 N N N -15.269 -12.170 8.168 ? ? ? ALA 1 HB2 polymer 1 1 94 ? ? ? PRD_002268 H5 H5 H 0 1 N N N -15.671 -10.637 7.321 ? ? ? ALA 1 HB3 polymer 1 1 95 ? ? ? PRD_002268 H6 H6 H 0 1 N N N -17.295 -10.135 6.697 ? ? ? DGL 2 H polymer 1 1 96 ? ? ? PRD_002268 H7 H7 H 0 1 N N N -18.586 -8.630 5.208 ? ? ? DGL 2 HA polymer 1 1 97 ? ? ? PRD_002268 H8 H8 H 0 1 N N N -20.575 -9.578 5.606 ? ? ? DGL 2 HB2 polymer 1 1 98 ? ? ? PRD_002268 H9 H9 H 0 1 N N N -20.338 -10.317 3.986 ? ? ? DGL 2 HB3 polymer 1 1 99 ? ? ? PRD_002268 H10 H10 H 0 1 N N N -19.083 -12.102 5.845 ? ? ? DGL 2 HG2 polymer 1 1 100 ? ? ? PRD_002268 H11 H11 H 0 1 N N N -20.642 -11.621 6.597 ? ? ? DGL 2 HG3 polymer 1 1 101 ? ? ? PRD_002268 H12 H12 H 0 1 N Y N ? ? ? ? ? ? DGL 2 HXT polymer 1 1 102 ? ? ? PRD_002268 H13 H13 H 0 1 N N N -20.092 -11.692 3.139 ? ? ? LYS 3 H polymer 1 1 103 ? ? ? PRD_002268 H14 H14 H 0 1 N N N -20.971 -12.820 1.457 ? ? ? LYS 3 HA polymer 1 1 104 ? ? ? PRD_002268 H15 H15 H 0 1 N N N -20.223 -14.871 3.393 ? ? ? LYS 3 HB2 polymer 1 1 105 ? ? ? PRD_002268 H16 H16 H 0 1 N N N -21.443 -15.411 2.191 ? ? ? LYS 3 HB3 polymer 1 1 106 ? ? ? PRD_002268 H17 H17 H 0 1 N N N -18.695 -14.167 1.694 ? ? ? LYS 3 HG2 polymer 1 1 107 ? ? ? PRD_002268 H18 H18 H 0 1 N N N -19.300 -15.774 1.168 ? ? ? LYS 3 HG3 polymer 1 1 108 ? ? ? PRD_002268 H19 H19 H 0 1 N N N -19.530 -14.789 -0.844 ? ? ? LYS 3 HD2 polymer 1 1 109 ? ? ? PRD_002268 H20 H20 H 0 1 N N N -21.044 -14.119 -0.147 ? ? ? LYS 3 HD3 polymer 1 1 110 ? ? ? PRD_002268 H21 H21 H 0 1 N N N -18.356 -12.693 -0.302 ? ? ? LYS 3 HE2 polymer 1 1 111 ? ? ? PRD_002268 H22 H22 H 0 1 N N N -19.696 -12.516 -1.485 ? ? ? LYS 3 HE3 polymer 1 1 112 ? ? ? PRD_002268 H23 H23 H 0 1 N N N -19.317 -10.559 -0.257 ? ? ? LYS 3 HZ1 polymer 1 1 113 ? ? ? PRD_002268 H24 H24 H 0 1 N N N -20.802 -11.135 0.101 ? ? ? LYS 3 HZ2 polymer 1 1 114 ? ? ? PRD_002268 H25 H25 H 0 1 N N N -19.584 -11.296 1.176 ? ? ? LYS 3 HZ3 polymer 1 1 115 ? ? ? PRD_002268 H26 H26 H 0 1 N N N -22.467 -11.341 3.216 ? ? ? DAL 4 H polymer 1 1 116 ? ? ? PRD_002268 H27 H27 H 0 1 N N N -24.512 -10.482 3.775 ? ? ? DAL 4 HA polymer 1 1 117 ? ? ? PRD_002268 H28 H28 H 0 1 N N N -26.860 -11.483 3.611 ? ? ? DAL 4 HB1 polymer 1 1 118 ? ? ? PRD_002268 H29 H29 H 0 1 N N N -26.125 -13.003 2.999 ? ? ? DAL 4 HB2 polymer 1 1 119 ? ? ? PRD_002268 H30 H30 H 0 1 N N N -25.724 -12.412 4.647 ? ? ? DAL 4 HB3 polymer 1 1 120 ? ? ? PRD_002268 H31 H31 H 0 1 N N N -22.947 -9.419 2.384 ? ? ? DAL 5 H polymer 1 1 121 ? ? ? PRD_002268 H32 H32 H 0 1 N N N -22.482 -7.592 0.849 ? ? ? DAL 5 HA polymer 1 1 122 ? ? ? PRD_002268 H33 H33 H 0 1 N N N -24.608 -6.796 -0.373 ? ? ? DAL 5 HB1 polymer 1 1 123 ? ? ? PRD_002268 H34 H34 H 0 1 N N N -25.415 -8.341 0.061 ? ? ? DAL 5 HB2 polymer 1 1 124 ? ? ? PRD_002268 H35 H35 H 0 1 N N N -24.957 -7.174 1.348 ? ? ? DAL 5 HB3 polymer 1 1 125 ? ? ? PRD_002268 H36 H36 H 0 1 N Y N -22.587 -9.362 -2.643 ? ? ? DAL 5 HXT polymer 1 1 126 ? ? ? PRD_002268 H37 H37 H 0 1 N N N -11.778 -8.894 6.053 ? ? ? MUB 1 H1 polymer 2 2 127 ? ? ? PRD_002268 H38 H38 H 0 1 N N N -10.940 -10.993 5.762 ? ? ? MUB 1 H2 polymer 2 2 128 ? ? ? PRD_002268 H39 H39 H 0 1 N N N -8.840 -10.824 4.673 ? ? ? MUB 1 HN2 polymer 2 2 129 ? ? ? PRD_002268 H40 H40 H 0 1 N N N -8.450 -10.666 1.038 ? ? ? MUB 1 H81 polymer 2 2 130 ? ? ? PRD_002268 H41 H41 H 0 1 N N N -7.585 -10.004 2.466 ? ? ? MUB 1 H82 polymer 2 2 131 ? ? ? PRD_002268 H42 H42 H 0 1 N N N -7.919 -11.766 2.355 ? ? ? MUB 1 H83 polymer 2 2 132 ? ? ? PRD_002268 H43 H43 H 0 1 N N N -11.859 -10.740 2.910 ? ? ? MUB 1 H3 polymer 2 2 133 ? ? ? PRD_002268 H44 H44 H 0 1 N N N -12.103 -11.768 5.838 ? ? ? MUB 1 H9 polymer 2 2 134 ? ? ? PRD_002268 H45 H45 H 0 0 N N N -10.098 -13.144 5.479 ? ? ? MUB 1 H111 polymer 2 2 135 ? ? ? PRD_002268 H46 H46 H 0 0 N N N -10.776 -12.750 7.095 ? ? ? MUB 1 H112 polymer 2 2 136 ? ? ? PRD_002268 H47 H47 H 0 0 N N N -11.039 -14.378 6.384 ? ? ? MUB 1 H113 polymer 2 2 137 ? ? ? PRD_002268 H48 H48 H 0 1 N N N -13.595 -10.295 5.364 ? ? ? MUB 1 H4 polymer 2 2 138 ? ? ? PRD_002268 H49 H49 H 0 1 N N N -13.603 -8.617 2.870 ? ? ? MUB 1 H5 polymer 2 2 139 ? ? ? PRD_002268 H50 H50 H 0 1 N N N -13.795 -7.967 5.843 ? ? ? MUB 1 H61 polymer 2 2 140 ? ? ? PRD_002268 H51 H51 H 0 1 N N N -14.078 -6.839 4.474 ? ? ? MUB 1 H62 polymer 2 2 141 ? ? ? PRD_002268 H52 H52 H 0 1 N Y N -15.658 -8.776 3.946 ? ? ? MUB 1 HO6 polymer 2 2 142 ? ? ? PRD_002268 H53 H53 H 0 1 N N N -13.540 -11.983 2.137 ? ? ? NAG 2 H1 polymer 2 2 143 ? ? ? PRD_002268 H54 H54 H 0 1 N N N -16.286 -10.833 1.585 ? ? ? NAG 2 H2 polymer 2 2 144 ? ? ? PRD_002268 H55 H55 H 0 1 N N N -14.629 -12.900 0.093 ? ? ? NAG 2 H3 polymer 2 2 145 ? ? ? PRD_002268 H56 H56 H 0 1 N N N -15.332 -10.035 -0.703 ? ? ? NAG 2 H4 polymer 2 2 146 ? ? ? PRD_002268 H57 H57 H 0 1 N N N -12.632 -11.153 0.180 ? ? ? NAG 2 H5 polymer 2 2 147 ? ? ? PRD_002268 H58 H58 H 0 1 N N N -12.451 -9.367 -1.497 ? ? ? NAG 2 H61 polymer 2 2 148 ? ? ? PRD_002268 H59 H59 H 0 1 N N N -13.532 -8.321 -0.516 ? ? ? NAG 2 H62 polymer 2 2 149 ? ? ? PRD_002268 H60 H60 H 0 1 N N N -15.409 -15.961 3.138 ? ? ? NAG 2 H81 polymer 2 2 150 ? ? ? PRD_002268 H61 H61 H 0 1 N N N -16.084 -14.758 4.289 ? ? ? NAG 2 H82 polymer 2 2 151 ? ? ? PRD_002268 H62 H62 H 0 1 N N N -17.038 -15.260 2.851 ? ? ? NAG 2 H83 polymer 2 2 152 ? ? ? PRD_002268 H63 H63 H 0 1 N N N -16.979 -12.707 2.738 ? ? ? NAG 2 HN2 polymer 2 2 153 ? ? ? PRD_002268 H64 H64 H 0 1 N Y N -16.384 -12.564 -1.405 ? ? ? NAG 2 HO3 polymer 2 2 154 ? ? ? PRD_002268 H65 H65 H 0 1 N Y N -13.777 -10.579 -2.356 ? ? ? NAG 2 HO4 polymer 2 2 155 ? ? ? PRD_002268 H66 H66 H 0 1 N Y N -11.385 -9.318 0.883 ? ? ? NAG 2 HO6 polymer 2 2 156 ? ? ? PRD_002268 H67 H67 H 0 1 N N N -9.810 -7.386 2.714 ? ? ? P1W 5 H12 non-polymer 4 5 157 ? ? ? PRD_002268 H68 H68 H 0 1 N N N -8.440 -6.257 2.991 ? ? ? P1W 5 H11 non-polymer 4 5 158 ? ? ? PRD_002268 H69 H69 H 0 1 N N N -9.265 -4.918 1.199 ? ? ? P1W 5 H2 non-polymer 4 5 159 ? ? ? PRD_002268 H70 H70 H 0 1 N N N -12.681 -4.141 0.295 ? ? ? P1W 5 H43 non-polymer 4 5 160 ? ? ? PRD_002268 H71 H71 H 0 1 N N N -10.989 -3.540 0.245 ? ? ? P1W 5 H42 non-polymer 4 5 161 ? ? ? PRD_002268 H72 H72 H 0 1 N N N -12.053 -6.681 2.860 ? ? ? P1W 5 H51 non-polymer 4 5 162 ? ? ? PRD_002268 H73 H73 H 0 1 N N N -13.135 -5.309 2.442 ? ? ? P1W 5 H52 non-polymer 4 5 163 ? ? ? PRD_002268 H74 H74 H 0 1 N N N -12.955 -6.689 1.306 ? ? ? P1W 5 H53 non-polymer 4 5 164 ? ? ? PRD_002268 H75 H75 H 0 1 N N N -11.004 -6.110 -1.011 ? ? ? P1W 6 H12 non-polymer 4 6 165 ? ? ? PRD_002268 H76 H76 H 0 1 N N N -10.738 -4.502 -1.766 ? ? ? P1W 6 H11 non-polymer 4 6 166 ? ? ? PRD_002268 H77 H77 H 0 1 N N N -13.611 -5.525 -1.296 ? ? ? P1W 6 H2 non-polymer 4 6 167 ? ? ? PRD_002268 H78 H78 H 0 1 N N N -14.069 -5.497 -4.871 ? ? ? P1W 6 H43 non-polymer 4 6 168 ? ? ? PRD_002268 H79 H79 H 0 1 N N N -14.912 -5.668 -3.293 ? ? ? P1W 6 H42 non-polymer 4 6 169 ? ? ? PRD_002268 H80 H80 H 0 1 N N N -10.798 -4.553 -3.501 ? ? ? P1W 6 H51 non-polymer 4 6 170 ? ? ? PRD_002268 H81 H81 H 0 1 N N N -11.633 -5.353 -4.875 ? ? ? P1W 6 H52 non-polymer 4 6 171 ? ? ? PRD_002268 H82 H82 H 0 1 N N N -11.918 -3.611 -4.541 ? ? ? P1W 6 H53 non-polymer 4 6 172 ? ? ? PRD_002268 H83 H83 H 0 1 N N N -15.418 -3.634 -5.002 ? ? ? P1W 7 H12 non-polymer 4 7 173 ? ? ? PRD_002268 H84 H84 H 0 1 N N N -14.042 -2.902 -4.107 ? ? ? P1W 7 H11 non-polymer 4 7 174 ? ? ? PRD_002268 H85 H85 H 0 1 N N N -15.370 -3.415 -1.923 ? ? ? P1W 7 H2 non-polymer 4 7 175 ? ? ? PRD_002268 H86 H86 H 0 1 N N N -17.364 -2.767 -0.905 ? ? ? P1W 7 H43 non-polymer 4 7 176 ? ? ? PRD_002268 H87 H87 H 0 1 N N N -18.255 -1.545 -1.874 ? ? ? P1W 7 H41 non-polymer 4 7 177 ? ? ? PRD_002268 H88 H88 H 0 1 N N N -18.813 -3.252 -1.849 ? ? ? P1W 7 H42 non-polymer 4 7 178 ? ? ? PRD_002268 H89 H89 H 0 1 N N N -17.034 -2.939 -5.205 ? ? ? P1W 7 H51 non-polymer 4 7 179 ? ? ? PRD_002268 H90 H90 H 0 1 N N N -18.612 -3.357 -4.454 ? ? ? P1W 7 H52 non-polymer 4 7 180 ? ? ? PRD_002268 H91 H91 H 0 1 N N N -18.053 -1.649 -4.480 ? ? ? P1W 7 H53 non-polymer 4 7 181 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_002268 N1 C1 SING N N 1 PRD_002268 N1 H1 SING N N 2 PRD_002268 C1 C2 SING N N 3 PRD_002268 C1 C3 SING N N 4 PRD_002268 C1 H2 SING N N 5 PRD_002268 C2 O1 DOUB N N 6 PRD_002268 C3 H3 SING N N 7 PRD_002268 C3 H4 SING N N 8 PRD_002268 C3 H5 SING N N 9 PRD_002268 N2 C4 SING N N 10 PRD_002268 N2 H6 SING N N 11 PRD_002268 C4 C5 SING N N 12 PRD_002268 C4 C6 SING N N 13 PRD_002268 C4 H7 SING N N 14 PRD_002268 C5 O2 DOUB N N 15 PRD_002268 C5 O4 SING N N 16 PRD_002268 C6 C7 SING N N 17 PRD_002268 C6 H8 SING N N 18 PRD_002268 C6 H9 SING N N 19 PRD_002268 C7 C8 SING N N 20 PRD_002268 C7 H10 SING N N 21 PRD_002268 C7 H11 SING N N 22 PRD_002268 C8 O3 DOUB N N 23 PRD_002268 O4 H12 SING N N 24 PRD_002268 N3 C9 SING N N 25 PRD_002268 N3 H13 SING N N 26 PRD_002268 C9 C10 SING N N 27 PRD_002268 C9 C11 SING N N 28 PRD_002268 C9 H14 SING N N 29 PRD_002268 C10 O5 DOUB N N 30 PRD_002268 C11 C12 SING N N 31 PRD_002268 C11 H15 SING N N 32 PRD_002268 C11 H16 SING N N 33 PRD_002268 C12 C13 SING N N 34 PRD_002268 C12 H17 SING N N 35 PRD_002268 C12 H18 SING N N 36 PRD_002268 C13 C14 SING N N 37 PRD_002268 C13 H19 SING N N 38 PRD_002268 C13 H20 SING N N 39 PRD_002268 C14 N4 SING N N 40 PRD_002268 C14 H21 SING N N 41 PRD_002268 C14 H22 SING N N 42 PRD_002268 N4 H23 SING N N 43 PRD_002268 N4 H24 SING N N 44 PRD_002268 N4 H25 SING N N 45 PRD_002268 N5 C15 SING N N 46 PRD_002268 N5 H26 SING N N 47 PRD_002268 C15 C16 SING N N 48 PRD_002268 C15 C17 SING N N 49 PRD_002268 C15 H27 SING N N 50 PRD_002268 C16 H28 SING N N 51 PRD_002268 C16 H29 SING N N 52 PRD_002268 C16 H30 SING N N 53 PRD_002268 C17 O6 DOUB N N 54 PRD_002268 N6 C18 SING N N 55 PRD_002268 N6 H31 SING N N 56 PRD_002268 C18 C19 SING N N 57 PRD_002268 C18 C20 SING N N 58 PRD_002268 C18 H32 SING N N 59 PRD_002268 C19 H33 SING N N 60 PRD_002268 C19 H34 SING N N 61 PRD_002268 C19 H35 SING N N 62 PRD_002268 C20 O7 DOUB N N 63 PRD_002268 C20 O8 SING N N 64 PRD_002268 O8 H36 SING N N 65 PRD_002268 C21 C22 SING N N 66 PRD_002268 C22 C23 SING N N 67 PRD_002268 C23 C24 SING N N 68 PRD_002268 C24 C25 SING N N 69 PRD_002268 C25 C26 SING N N 70 PRD_002268 C27 C28 SING N N 71 PRD_002268 C29 C30 SING N N 72 PRD_002268 C29 C31 SING N N 73 PRD_002268 C21 O9 SING N N 74 PRD_002268 C23 O10 SING N N 75 PRD_002268 C29 O10 SING N N 76 PRD_002268 C24 O11 SING N N 77 PRD_002268 C21 O12 SING N N 78 PRD_002268 C25 O12 SING N N 79 PRD_002268 C26 O13 SING N N 80 PRD_002268 C27 O14 DOUB N N 81 PRD_002268 C30 O15 DOUB N N 82 PRD_002268 C22 N7 SING N N 83 PRD_002268 C27 N7 SING N N 84 PRD_002268 C21 H37 SING N N 85 PRD_002268 C22 H38 SING N N 86 PRD_002268 N7 H39 SING N N 87 PRD_002268 C28 H40 SING N N 88 PRD_002268 C28 H41 SING N N 89 PRD_002268 C28 H42 SING N N 90 PRD_002268 C23 H43 SING N N 91 PRD_002268 C29 H44 SING N N 92 PRD_002268 C31 H45 SING N N 93 PRD_002268 C31 H46 SING N N 94 PRD_002268 C31 H47 SING N N 95 PRD_002268 C24 H48 SING N N 96 PRD_002268 C25 H49 SING N N 97 PRD_002268 C26 H50 SING N N 98 PRD_002268 C26 H51 SING N N 99 PRD_002268 O13 H52 SING N N 100 PRD_002268 C32 C33 SING N N 101 PRD_002268 C32 O18 SING N N 102 PRD_002268 C32 H53 SING N N 103 PRD_002268 C33 C34 SING N N 104 PRD_002268 C33 N8 SING N N 105 PRD_002268 C33 H54 SING N N 106 PRD_002268 C34 C35 SING N N 107 PRD_002268 C34 O16 SING N N 108 PRD_002268 C34 H55 SING N N 109 PRD_002268 C35 C36 SING N N 110 PRD_002268 C35 O17 SING N N 111 PRD_002268 C35 H56 SING N N 112 PRD_002268 C36 C37 SING N N 113 PRD_002268 C36 O18 SING N N 114 PRD_002268 C36 H57 SING N N 115 PRD_002268 C37 O19 SING N N 116 PRD_002268 C37 H58 SING N N 117 PRD_002268 C37 H59 SING N N 118 PRD_002268 C38 C39 SING N N 119 PRD_002268 C38 N8 SING N N 120 PRD_002268 C38 O20 DOUB N N 121 PRD_002268 C39 H60 SING N N 122 PRD_002268 C39 H61 SING N N 123 PRD_002268 C39 H62 SING N N 124 PRD_002268 N8 H63 SING N N 125 PRD_002268 O16 H64 SING N N 126 PRD_002268 O17 H65 SING N N 127 PRD_002268 O19 H66 SING N N 128 PRD_002268 P1 O21 SING N N 129 PRD_002268 P1 O22 SING N N 130 PRD_002268 P1 O23 DOUB N N 131 PRD_002268 P2 O24 SING N N 132 PRD_002268 P2 O25 SING N N 133 PRD_002268 P2 O26 DOUB N N 134 PRD_002268 C44 C42 SING N N 135 PRD_002268 C42 C43 SING N N 136 PRD_002268 C42 C41 DOUB N N 137 PRD_002268 C40 C41 SING N N 138 PRD_002268 C40 H67 SING N N 139 PRD_002268 C40 H68 SING N N 140 PRD_002268 C41 H69 SING N N 141 PRD_002268 C43 H70 SING N N 142 PRD_002268 C43 H71 SING N N 143 PRD_002268 C44 H72 SING N N 144 PRD_002268 C44 H73 SING N N 145 PRD_002268 C44 H74 SING N N 146 PRD_002268 C49 C47 SING N N 147 PRD_002268 C47 C48 SING N N 148 PRD_002268 C47 C46 DOUB N N 149 PRD_002268 C45 C46 SING N N 150 PRD_002268 C45 H75 SING N N 151 PRD_002268 C45 H76 SING N N 152 PRD_002268 C46 H77 SING N N 153 PRD_002268 C48 H78 SING N N 154 PRD_002268 C48 H79 SING N N 155 PRD_002268 C49 H80 SING N N 156 PRD_002268 C49 H81 SING N N 157 PRD_002268 C49 H82 SING N N 158 PRD_002268 C54 C52 SING N N 159 PRD_002268 C52 C53 SING N N 160 PRD_002268 C52 C51 DOUB N N 161 PRD_002268 C50 C51 SING N N 162 PRD_002268 C50 H83 SING N N 163 PRD_002268 C50 H84 SING N N 164 PRD_002268 C51 H85 SING N N 165 PRD_002268 C53 H86 SING N N 166 PRD_002268 C53 H87 SING N N 167 PRD_002268 C53 H88 SING N N 168 PRD_002268 C54 H89 SING N N 169 PRD_002268 C54 H90 SING N N 170 PRD_002268 C54 H91 SING N N 171 PRD_002268 C2 N2 SING N N 172 PRD_002268 C8 N3 SING N N 173 PRD_002268 C10 N5 SING N N 174 PRD_002268 C17 N6 SING N N 175 PRD_002268 O11 C32 SING N N 176 PRD_002268 N1 C30 SING N N 177 PRD_002268 O9 P1 SING N N 178 PRD_002268 O23 P2 SING N N 179 PRD_002268 O26 C40 SING N N 180 PRD_002268 C43 C45 SING N N 181 PRD_002268 C48 C50 SING N N 182 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_002268 InChI InChI 1.06 "InChI=1S/C54H90N8O26P2/c1-27(2)15-13-16-28(3)17-14-18-29(4)22-24-82-89(78,79)88-90(80,81)87-54-42(60-35(10)66)46(45(39(26-64)85-54)86-53-41(59-34(9)65)44(69)43(68)38(25-63)84-53)83-33(8)49(72)56-31(6)48(71)62-37(52(76)77)20-21-40(67)61-36(19-11-12-23-55)50(73)57-30(5)47(70)58-32(7)51(74)75/h15,17,22,30-33,36-39,41-46,53-54,63-64,68-69H,11-14,16,18-21,23-26,55H2,1-10H3,(H9-4,56,57,58,59,60,61,62,65,66,67,70,71,72,73,74,75,76,77,78,79,80,81)/q-4/p+1/b28-17+,29-22+/t30-,31+,32-,33-,36+,37-,38-,39-,41-,42-,43-,44-,45-,46-,53+,54-/m1/s1" PRD_002268 InChIKey InChI 1.06 FXVQKVNQHLOTIP-UTOAJUMUSA-O PRD_002268 SMILES_CANONICAL CACTVS 3.385 "C[C@@H](NC(=O)[C@@H](C)NC(=O)[C@H](CCCC[NH3+])NC(=O)CC[C@@H](NC(=O)[C@H](C)NC(=O)[C@@H](C)O[C@@H]1[C@@H](NC(C)=O)[C@H](O[C@H](CO)[C@H]1O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2NC(C)=O)O[P]([O-])([O-])=[O][P]([O-])([O-])=[O]C/C=C(C)/CC/C=C(C)/CCC=C(C)C)C(O)=O)C(O)=O" PRD_002268 SMILES CACTVS 3.385 "C[CH](NC(=O)[CH](C)NC(=O)[CH](CCCC[NH3+])NC(=O)CC[CH](NC(=O)[CH](C)NC(=O)[CH](C)O[CH]1[CH](NC(C)=O)[CH](O[CH](CO)[CH]1O[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2NC(C)=O)O[P]([O-])([O-])=[O][P]([O-])([O-])=[O]CC=C(C)CCC=C(C)CCC=C(C)C)C(O)=O)C(O)=O" PRD_002268 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](C(=O)N[C@H](C)C(=O)O)NC(=O)[C@H](CCCC[NH3+])NC(=O)CC[C@H](C(=O)O)NC(=O)[C@H](C)NC(=O)C(C)O[C@@H]1[C@H]([C@H](O[C@@H]([C@H]1O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)NC(=O)C)CO)OP(=OP(=OC/C=C(\C)/CC/C=C(\C)/CCC=C(C)C)([O-])[O-])([O-])[O-])NC(=O)C" PRD_002268 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(=O)NC(CCC(=O)NC(CCCC[NH3+])C(=O)NC(C)C(=O)NC(C)C(=O)O)C(=O)O)NC(=O)C(C)OC1C(C(OC(C1OC2C(C(C(C(O2)CO)O)O)NC(=O)C)CO)OP(=OP(=OCC=C(C)CCC=C(C)CCC=C(C)C)([O-])[O-])([O-])[O-])NC(=O)C" # _pdbx_chem_comp_identifier.comp_id PRD_002268 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(5~{S})-5-[[(4~{R})-4-[[(2~{S})-2-[2-[(2~{R},3~{R},4~{R},5~{S},6~{R})-3-acetamido-5-[(2~{S},3~{R},4~{R},5~{S},6~{R})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-2-[[[bis(oxidanidyl)-[[(2~{E},6~{E})-3,7,11-trimethyldodeca-2,6,10-trienyl]-$l^{3}-oxidanylidene]-$l^{5}-phosphanyl]-$l^{3}-oxidanylidene]-bis(oxidanidyl)-$l^{5}-phosphanyl]oxy-6-(hydroxymethyl)oxan-4-yl]oxypropanoylamino]propanoyl]amino]-5-oxidanyl-5-oxidanylidene-pentanoyl]amino]-6-oxidanylidene-6-[[(2~{R})-1-oxidanylidene-1-[[(2~{R})-1-oxidanyl-1-oxidanylidene-propan-2-yl]amino]propan-2-yl]amino]hexyl]azanium" #