data_PRDCC_002315 # _chem_comp.id PRD_002315 _chem_comp.name "4HP-PRO-LYS-ARG-NH2, BM-30" _chem_comp.formula "C25 H42 N8 O5" _chem_comp.formula_weight 534.652 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_002315 C1 C1 C 0 1 N N N 5.299 -33.481 14.404 4.015 0.960 -1.240 4HP 1 C8 polymer 1 1 1 ? ? ? PRD_002315 O1 O1 O 0 1 N N N 4.888 -32.995 15.466 3.860 0.646 -0.079 4HP 1 O1 polymer 1 1 2 ? ? ? PRD_002315 C2 C2 C 0 1 N N N 6.580 -34.399 14.387 5.141 0.358 -2.039 4HP 1 C7 polymer 1 1 3 ? ? ? PRD_002315 C3 C3 C 0 1 Y N N 6.237 -35.545 15.401 5.920 -0.596 -1.171 4HP 1 C1 polymer 1 1 4 ? ? ? PRD_002315 C4 C4 C 0 1 Y N N 6.500 -35.359 16.751 5.557 -1.929 -1.112 4HP 1 C2 polymer 1 1 5 ? ? ? PRD_002315 C5 C5 C 0 1 Y N N 6.187 -36.353 17.661 6.269 -2.805 -0.317 4HP 1 C3 polymer 1 1 6 ? ? ? PRD_002315 C6 C6 C 0 1 Y N N 5.595 -37.539 17.218 7.350 -2.347 0.423 4HP 1 C4 polymer 1 1 7 ? ? ? PRD_002315 C7 C7 C 0 1 Y N N 5.316 -37.724 15.866 7.712 -1.009 0.362 4HP 1 C5 polymer 1 1 8 ? ? ? PRD_002315 C8 C8 C 0 1 Y N N 5.635 -36.737 14.959 7.000 -0.138 -0.439 4HP 1 C6 polymer 1 1 9 ? ? ? PRD_002315 O2 O2 O 0 1 N N N 5.269 -38.529 18.142 8.052 -3.207 1.207 4HP 1 O4 polymer 1 1 10 ? ? ? PRD_002315 N1 N1 N 0 1 N N N 4.562 -33.248 13.174 3.176 1.844 -1.816 PRO 2 N polymer 1 1 11 ? ? ? PRD_002315 C9 C9 C 0 1 N N S 3.459 -32.513 13.107 2.038 2.500 -1.157 PRO 2 CA polymer 1 1 12 ? ? ? PRD_002315 C10 C10 C 0 1 N N N 2.409 -33.153 14.087 1.062 1.462 -0.664 PRO 2 C polymer 1 1 13 ? ? ? PRD_002315 O3 O3 O 0 1 N N N 2.173 -34.346 14.060 1.289 0.285 -0.842 PRO 2 O polymer 1 1 14 ? ? ? PRD_002315 C11 C11 C 0 1 N N N 2.908 -32.658 11.655 1.357 3.403 -2.208 PRO 2 CB polymer 1 1 15 ? ? ? PRD_002315 C12 C12 C 0 1 N N N 4.160 -33.124 10.812 1.809 2.772 -3.552 PRO 2 CG polymer 1 1 16 ? ? ? PRD_002315 C13 C13 C 0 1 N N N 4.922 -33.800 11.688 3.252 2.318 -3.210 PRO 2 CD polymer 1 1 17 ? ? ? PRD_002315 N2 N2 N 0 1 N N N 1.659 -32.320 15.075 -0.062 1.843 -0.025 LYS 3 N polymer 1 1 18 ? ? ? PRD_002315 C14 C14 C 0 1 N N S 0.697 -33.023 15.858 -1.010 0.834 0.454 LYS 3 CA polymer 1 1 19 ? ? ? PRD_002315 C15 C15 C 0 1 N N N -0.257 -32.032 16.556 -2.384 1.444 0.555 LYS 3 C polymer 1 1 20 ? ? ? PRD_002315 O4 O4 O 0 1 N N N 0.049 -30.885 16.667 -2.555 2.607 0.256 LYS 3 O polymer 1 1 21 ? ? ? PRD_002315 C16 C16 C 0 1 N N N 1.364 -33.907 16.902 -0.570 0.335 1.832 LYS 3 CB polymer 1 1 22 ? ? ? PRD_002315 C17 C17 C 0 1 N N N 2.205 -33.152 17.945 0.769 -0.394 1.707 LYS 3 CG polymer 1 1 23 ? ? ? PRD_002315 C18 C18 C 0 1 N N N 2.962 -34.192 18.746 1.208 -0.893 3.086 LYS 3 CD polymer 1 1 24 ? ? ? PRD_002315 C19 C19 C 0 1 N N N 3.755 -33.616 19.932 2.547 -1.622 2.961 LYS 3 CE polymer 1 1 25 ? ? ? PRD_002315 N3 N3 N 1 1 N N N 4.409 -34.768 20.682 2.969 -2.101 4.284 LYS 3 NZ polymer 1 1 26 ? ? ? PRD_002315 N4 N4 N 0 1 N N N -1.510 -32.565 17.025 -3.423 0.697 0.977 ARG 4 N polymer 1 1 27 ? ? ? PRD_002315 C20 C20 C 0 1 N N S -2.471 -31.755 17.735 -4.759 1.290 1.075 ARG 4 CA polymer 1 1 28 ? ? ? PRD_002315 C21 C21 C 0 1 N N N -1.848 -31.550 19.174 -4.905 1.984 2.405 ARG 4 C polymer 1 1 29 ? ? ? PRD_002315 O5 O5 O 0 1 N N N -1.736 -30.436 19.647 -3.983 1.983 3.193 ARG 4 O polymer 1 1 30 ? ? ? PRD_002315 C22 C22 C 0 1 N N N -3.762 -32.505 17.851 -5.815 0.189 0.956 ARG 4 CB polymer 1 1 31 ? ? ? PRD_002315 C23 C23 C 0 1 N N N -4.295 -32.966 16.512 -5.750 -0.432 -0.440 ARG 4 CG polymer 1 1 32 ? ? ? PRD_002315 C24 C24 C 0 1 N N N -5.542 -33.835 16.677 -6.806 -1.533 -0.559 ARG 4 CD polymer 1 1 33 ? ? ? PRD_002315 N5 N5 N 0 1 N N N -6.695 -33.228 16.009 -6.743 -2.127 -1.897 ARG 4 NE polymer 1 1 34 ? ? ? PRD_002315 C25 C25 C 0 1 N N N -7.519 -32.348 16.606 -7.599 -3.139 -2.237 ARG 4 CZ polymer 1 1 35 ? ? ? PRD_002315 N6 N6 N 0 1 N N N -8.487 -31.868 15.967 -8.490 -3.583 -1.351 ARG 4 NH1 polymer 1 1 36 ? ? ? PRD_002315 N7 N7 N 1 1 N N N -7.340 -31.976 17.808 -7.542 -3.679 -3.453 ARG 4 NH2 polymer 1 1 37 ? ? ? PRD_002315 N8 N8 N 0 1 N N N -1.397 -32.752 19.928 -6.059 2.605 2.718 NH2 5 N polymer 1 1 38 ? ? ? PRD_002315 H1 H1 H 0 1 N N N 6.756 -34.807 13.381 4.732 -0.180 -2.895 4HP 1 H71 polymer 1 1 39 ? ? ? PRD_002315 H2 H2 H 0 1 N N N 7.467 -33.838 14.716 5.801 1.151 -2.391 4HP 1 H72 polymer 1 1 40 ? ? ? PRD_002315 H3 H3 H 0 1 N N N 6.949 -34.438 17.091 4.716 -2.285 -1.688 4HP 1 H2 polymer 1 1 41 ? ? ? PRD_002315 H4 H4 H 0 1 N N N 6.400 -36.213 18.711 5.985 -3.846 -0.271 4HP 1 H3 polymer 1 1 42 ? ? ? PRD_002315 H5 H5 H 0 1 N N N 4.851 -38.639 15.529 8.552 -0.650 0.938 4HP 1 H5 polymer 1 1 43 ? ? ? PRD_002315 H6 H6 H 0 1 N N N 5.423 -36.878 13.910 7.284 0.903 -0.490 4HP 1 H6 polymer 1 1 44 ? ? ? PRD_002315 H7 H7 H 0 1 N N N 4.878 -39.268 17.691 8.794 -3.633 0.756 4HP 1 HO4 polymer 1 1 45 ? ? ? PRD_002315 H8 H8 H 0 1 N N N 3.611 -31.452 13.354 2.391 3.103 -0.320 PRO 2 HA polymer 1 1 46 ? ? ? PRD_002315 H9 H9 H 0 1 N N N 2.108 -33.412 11.615 0.273 3.361 -2.108 PRO 2 HB2 polymer 1 1 47 ? ? ? PRD_002315 H10 H10 H 0 1 N N N 2.525 -31.696 11.285 1.715 4.429 -2.124 PRO 2 HB3 polymer 1 1 48 ? ? ? PRD_002315 H11 H11 H 0 1 N N N 3.849 -33.776 9.982 1.180 1.921 -3.815 PRO 2 HG2 polymer 1 1 49 ? ? ? PRD_002315 H12 H12 H 0 1 N N N 4.704 -32.256 10.412 1.813 3.514 -4.350 PRO 2 HG3 polymer 1 1 50 ? ? ? PRD_002315 H13 H13 H 0 1 N N N 5.987 -33.628 11.471 3.945 3.156 -3.289 PRO 2 HD2 polymer 1 1 51 ? ? ? PRD_002315 H14 H14 H 0 1 N N N 4.704 -34.876 11.624 3.560 1.507 -3.870 PRO 2 HD3 polymer 1 1 52 ? ? ? PRD_002315 H15 H15 H 0 1 N N N 1.820 -31.339 15.180 -0.243 2.785 0.117 LYS 3 H polymer 1 1 53 ? ? ? PRD_002315 H16 H16 H 0 1 N N N 0.093 -33.666 15.202 -1.033 -0.002 -0.245 LYS 3 HA polymer 1 1 54 ? ? ? PRD_002315 H17 H17 H 0 1 N N N 0.577 -34.462 17.434 -0.461 1.184 2.507 LYS 3 HB2 polymer 1 1 55 ? ? ? PRD_002315 H18 H18 H 0 1 N N N 2.023 -34.616 16.379 -1.321 -0.349 2.227 LYS 3 HB3 polymer 1 1 56 ? ? ? PRD_002315 H19 H19 H 0 1 N N N 2.912 -32.476 17.442 0.659 -1.242 1.032 LYS 3 HG2 polymer 1 1 57 ? ? ? PRD_002315 H20 H20 H 0 1 N N N 1.549 -32.569 18.608 1.520 0.290 1.312 LYS 3 HG3 polymer 1 1 58 ? ? ? PRD_002315 H21 H21 H 0 1 N N N 2.238 -34.922 19.137 1.318 -0.044 3.761 LYS 3 HD2 polymer 1 1 59 ? ? ? PRD_002315 H22 H22 H 0 1 N N N 3.668 -34.700 18.073 0.457 -1.577 3.481 LYS 3 HD3 polymer 1 1 60 ? ? ? PRD_002315 H23 H23 H 0 1 N N N 4.529 -32.928 19.561 2.437 -2.471 2.286 LYS 3 HE2 polymer 1 1 61 ? ? ? PRD_002315 H24 H24 H 0 1 N N N 3.074 -33.074 20.605 3.298 -0.938 2.566 LYS 3 HE3 polymer 1 1 62 ? ? ? PRD_002315 H25 H25 H 0 1 N N N 4.929 -34.409 21.457 3.070 -1.316 4.910 LYS 3 HZ1 polymer 1 1 63 ? ? ? PRD_002315 H26 H26 H 0 1 N N N 3.703 -35.392 21.015 2.273 -2.734 4.650 LYS 3 HZ2 polymer 1 1 64 ? ? ? PRD_002315 H27 H27 H 0 1 N N N 5.025 -35.259 20.066 3.852 -2.582 4.202 LYS 3 HZ3 polymer 1 1 65 ? ? ? PRD_002315 H28 H28 H 0 1 N N N -1.721 -33.527 16.853 -3.286 -0.233 1.216 ARG 4 H polymer 1 1 66 ? ? ? PRD_002315 H29 H29 H 0 1 N N N -2.623 -30.779 17.250 -4.896 2.013 0.271 ARG 4 HA polymer 1 1 67 ? ? ? PRD_002315 H30 H30 H 0 1 N N N -3.600 -33.387 18.487 -5.625 -0.580 1.705 ARG 4 HB2 polymer 1 1 68 ? ? ? PRD_002315 H31 H31 H 0 1 N N N -4.509 -31.848 18.319 -6.805 0.616 1.118 ARG 4 HB3 polymer 1 1 69 ? ? ? PRD_002315 H32 H32 H 0 1 N N N -4.551 -32.084 15.906 -5.940 0.337 -1.189 ARG 4 HG2 polymer 1 1 70 ? ? ? PRD_002315 H33 H33 H 0 1 N N N -3.517 -33.550 15.999 -4.760 -0.859 -0.602 ARG 4 HG3 polymer 1 1 71 ? ? ? PRD_002315 H34 H34 H 0 1 N N N -5.351 -34.825 16.237 -6.616 -2.301 0.189 ARG 4 HD2 polymer 1 1 72 ? ? ? PRD_002315 H35 H35 H 0 1 N N N -5.764 -33.946 17.749 -7.796 -1.105 -0.398 ARG 4 HD3 polymer 1 1 73 ? ? ? PRD_002315 H36 H36 H 0 1 N N N -6.880 -33.481 15.059 -6.095 -1.804 -2.542 ARG 4 HE polymer 1 1 74 ? ? ? PRD_002315 H37 H37 H 0 0 N N N -9.097 -31.208 16.405 -8.531 -3.189 -0.466 ARG 4 HH11 polymer 1 1 75 ? ? ? PRD_002315 H38 H38 H 0 0 N N N -8.648 -32.146 15.020 -9.097 -4.300 -1.592 ARG 4 HH12 polymer 1 1 76 ? ? ? PRD_002315 H39 H39 H 0 0 N N N -7.964 -31.315 18.225 -8.149 -4.397 -3.693 ARG 4 HH21 polymer 1 1 77 ? ? ? PRD_002315 H40 H40 H 0 0 N N N -6.576 -32.345 18.337 -6.893 -3.356 -4.097 ARG 4 HH22 polymer 1 1 78 ? ? ? PRD_002315 H41 H41 H 0 1 N N N -0.995 -32.650 20.838 -6.796 2.605 2.088 NH2 5 HN1 polymer 1 1 79 ? ? ? PRD_002315 H42 H42 H 0 1 N N N -1.496 -33.662 19.525 -6.152 3.052 3.574 NH2 5 HN2 polymer 1 1 80 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_002315 C1 O1 DOUB N N 1 PRD_002315 C1 C2 SING N N 2 PRD_002315 C2 C3 SING N N 3 PRD_002315 C2 H1 SING N N 4 PRD_002315 C2 H2 SING N N 5 PRD_002315 C3 C4 SING Y N 6 PRD_002315 C3 C8 DOUB Y N 7 PRD_002315 C4 C5 DOUB Y N 8 PRD_002315 C4 H3 SING N N 9 PRD_002315 C5 C6 SING Y N 10 PRD_002315 C5 H4 SING N N 11 PRD_002315 C6 C7 DOUB Y N 12 PRD_002315 C6 O2 SING N N 13 PRD_002315 C7 C8 SING Y N 14 PRD_002315 C7 H5 SING N N 15 PRD_002315 C8 H6 SING N N 16 PRD_002315 O2 H7 SING N N 17 PRD_002315 N1 C9 SING N N 18 PRD_002315 N1 C13 SING N N 19 PRD_002315 C9 C10 SING N N 20 PRD_002315 C9 C11 SING N N 21 PRD_002315 C9 H8 SING N N 22 PRD_002315 C10 O3 DOUB N N 23 PRD_002315 C11 C12 SING N N 24 PRD_002315 C11 H9 SING N N 25 PRD_002315 C11 H10 SING N N 26 PRD_002315 C12 C13 SING N N 27 PRD_002315 C12 H11 SING N N 28 PRD_002315 C12 H12 SING N N 29 PRD_002315 C13 H13 SING N N 30 PRD_002315 C13 H14 SING N N 31 PRD_002315 N2 C14 SING N N 32 PRD_002315 N2 H15 SING N N 33 PRD_002315 C14 C15 SING N N 34 PRD_002315 C14 C16 SING N N 35 PRD_002315 C14 H16 SING N N 36 PRD_002315 C15 O4 DOUB N N 37 PRD_002315 C16 C17 SING N N 38 PRD_002315 C16 H17 SING N N 39 PRD_002315 C16 H18 SING N N 40 PRD_002315 C17 C18 SING N N 41 PRD_002315 C17 H19 SING N N 42 PRD_002315 C17 H20 SING N N 43 PRD_002315 C18 C19 SING N N 44 PRD_002315 C18 H21 SING N N 45 PRD_002315 C18 H22 SING N N 46 PRD_002315 C19 N3 SING N N 47 PRD_002315 C19 H23 SING N N 48 PRD_002315 C19 H24 SING N N 49 PRD_002315 N3 H25 SING N N 50 PRD_002315 N3 H26 SING N N 51 PRD_002315 N3 H27 SING N N 52 PRD_002315 N4 C20 SING N N 53 PRD_002315 N4 H28 SING N N 54 PRD_002315 C20 C21 SING N N 55 PRD_002315 C20 C22 SING N N 56 PRD_002315 C20 H29 SING N N 57 PRD_002315 C21 O5 DOUB N N 58 PRD_002315 C22 C23 SING N N 59 PRD_002315 C22 H30 SING N N 60 PRD_002315 C22 H31 SING N N 61 PRD_002315 C23 C24 SING N N 62 PRD_002315 C23 H32 SING N N 63 PRD_002315 C23 H33 SING N N 64 PRD_002315 C24 N5 SING N N 65 PRD_002315 C24 H34 SING N N 66 PRD_002315 C24 H35 SING N N 67 PRD_002315 N5 C25 SING N N 68 PRD_002315 N5 H36 SING N N 69 PRD_002315 C25 N6 SING N N 70 PRD_002315 C25 N7 DOUB N N 71 PRD_002315 N6 H37 SING N N 72 PRD_002315 N6 H38 SING N N 73 PRD_002315 N7 H39 SING N N 74 PRD_002315 N7 H40 SING N N 75 PRD_002315 N8 H41 SING N N 76 PRD_002315 N8 H42 SING N N 77 PRD_002315 C1 N1 SING N N 78 PRD_002315 C10 N2 SING N N 79 PRD_002315 C15 N4 SING N N 80 PRD_002315 C21 N8 SING N N 81 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_002315 InChI InChI 1.06 "InChI=1S/C25H40N8O5/c26-12-2-1-5-19(23(37)31-18(22(27)36)6-3-13-30-25(28)29)32-24(38)20-7-4-14-33(20)21(35)15-16-8-10-17(34)11-9-16/h8-11,18-20,34H,1-7,12-15,26H2,(H2,27,36)(H,31,37)(H,32,38)(H4,28,29,30)/p+2/t18-,19-,20-/m0/s1" PRD_002315 InChIKey InChI 1.06 OTJOBCMTWIFWOC-UFYCRDLUSA-P PRD_002315 SMILES_CANONICAL CACTVS 3.385 "NC(=[NH2+])NCCC[C@H](NC(=O)[C@H](CCCC[NH3+])NC(=O)[C@@H]1CCCN1C(=O)Cc2ccc(O)cc2)C(N)=O" PRD_002315 SMILES CACTVS 3.385 "NC(=[NH2+])NCCC[CH](NC(=O)[CH](CCCC[NH3+])NC(=O)[CH]1CCCN1C(=O)Cc2ccc(O)cc2)C(N)=O" PRD_002315 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CC(=O)N2CCC[C@H]2C(=O)N[C@@H](CCCC[NH3+])C(=O)N[C@@H](CCCNC(=[NH2+])N)C(=O)N)O" PRD_002315 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CC(=O)N2CCCC2C(=O)NC(CCCC[NH3+])C(=O)NC(CCCNC(=[NH2+])N)C(=O)N)O" # _pdbx_chem_comp_identifier.comp_id PRD_002315 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[[(4~{S})-4-[[(2~{S})-6-azaniumyl-2-[[(2~{S})-1-[2-(4-hydroxyphenyl)ethanoyl]pyrrolidin-2-yl]carbonylamino]hexanoyl]amino]-5-azanyl-5-oxidanylidene-pentyl]amino]-azanyl-methylidene]azanium" #