data_PRDCC_002368 # _chem_comp.id PRD_002368 _chem_comp.name "cyclo-Mle-Phe-Mle-D-Phe. D-Phe analogue of pseudoxylallemycin A" _chem_comp.formula "C32 H44 N4 O4" _chem_comp.formula_weight 548.716 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_pcm ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_002368 N1 N1 N 0 1 N N N 4.901 11.429 8.558 -0.018 -2.788 -0.159 MLE 1 N polymer 1 1 1 ? ? ? PRD_002368 C1 C1 C 0 1 N N N 5.724 12.032 7.498 -0.500 -4.177 -0.165 MLE 1 CN polymer 1 1 2 ? ? ? PRD_002368 C2 C2 C 0 1 N N S 3.451 11.301 8.346 1.214 -2.416 0.612 MLE 1 CA polymer 1 1 3 ? ? ? PRD_002368 C3 C3 C 0 1 N N N 2.781 12.546 7.721 2.448 -3.015 -0.061 MLE 1 CB polymer 1 1 4 ? ? ? PRD_002368 C4 C4 C 0 1 N N N 2.537 13.715 8.694 3.682 -2.748 0.804 MLE 1 CG polymer 1 1 5 ? ? ? PRD_002368 C5 C5 C 0 1 N N N 1.539 14.679 8.051 3.550 -3.507 2.127 MLE 1 CD1 polymer 1 1 6 ? ? ? PRD_002368 C6 C6 C 0 1 N N N 3.811 14.470 9.081 4.935 -3.224 0.067 MLE 1 CD2 polymer 1 1 7 ? ? ? PRD_002368 C7 C7 C 0 1 N N N 3.045 10.034 7.563 1.323 -0.921 0.714 MLE 1 C polymer 1 1 8 ? ? ? PRD_002368 O1 O1 O 0 1 N N N 1.854 9.755 7.445 0.911 -0.359 1.715 MLE 1 O polymer 1 1 9 ? ? ? PRD_002368 N2 N2 N 0 1 N N N 4.035 9.239 7.077 1.901 -0.185 -0.276 PHE 2 N polymer 1 1 10 ? ? ? PRD_002368 C8 C8 C 0 1 N N S 3.715 7.989 6.384 1.859 1.291 -0.063 PHE 2 CA polymer 1 1 11 ? ? ? PRD_002368 C9 C9 C 0 1 N N N 4.676 6.876 6.827 0.431 1.720 -0.290 PHE 2 C polymer 1 1 12 ? ? ? PRD_002368 O2 O2 O 0 1 N N N 5.459 6.375 6.009 -0.108 1.444 -1.349 PHE 2 O polymer 1 1 13 ? ? ? PRD_002368 C10 C10 C 0 1 N N N 3.734 8.158 4.848 2.774 1.974 -1.080 PHE 2 CB polymer 1 1 14 ? ? ? PRD_002368 C11 C11 C 0 1 Y N N 2.856 9.303 4.415 4.203 1.572 -0.819 PHE 2 CG polymer 1 1 15 ? ? ? PRD_002368 C12 C12 C 0 1 Y N N 1.492 9.098 4.137 4.731 0.456 -1.440 PHE 2 CD1 polymer 1 1 16 ? ? ? PRD_002368 C13 C13 C 0 1 Y N N 3.357 10.601 4.345 4.987 2.323 0.037 PHE 2 CD2 polymer 1 1 17 ? ? ? PRD_002368 C14 C14 C 0 1 Y N N 0.672 10.180 3.819 6.042 0.087 -1.200 PHE 2 CE1 polymer 1 1 18 ? ? ? PRD_002368 C15 C15 C 0 1 Y N N 2.539 11.677 4.044 6.298 1.954 0.276 PHE 2 CE2 polymer 1 1 19 ? ? ? PRD_002368 C16 C16 C 0 1 Y N N 1.189 11.470 3.778 6.824 0.835 -0.341 PHE 2 CZ polymer 1 1 20 ? ? ? PRD_002368 N3 N3 N 0 1 N N N 4.623 6.440 8.118 -0.238 2.436 0.667 MLE 3 N polymer 1 1 21 ? ? ? PRD_002368 C17 C17 C 0 1 N N N 5.660 5.483 8.511 0.368 3.405 1.581 MLE 3 CN polymer 1 1 22 ? ? ? PRD_002368 C18 C18 C 0 1 N N S 3.873 7.144 9.170 -1.694 2.077 0.727 MLE 3 CA polymer 1 1 23 ? ? ? PRD_002368 C19 C19 C 0 1 N N N 3.393 6.219 10.301 -2.495 2.868 -0.298 MLE 3 CB polymer 1 1 24 ? ? ? PRD_002368 C20 C20 C 0 1 N N N 2.587 5.001 9.819 -2.449 4.356 0.056 MLE 3 CG polymer 1 1 25 ? ? ? PRD_002368 C21 C21 C 0 1 N N N 2.111 4.199 11.032 -3.147 5.164 -1.040 MLE 3 CD1 polymer 1 1 26 ? ? ? PRD_002368 C22 C22 C 0 1 N N N 1.401 5.417 8.938 -3.162 4.584 1.391 MLE 3 CD2 polymer 1 1 27 ? ? ? PRD_002368 C23 C23 C 0 1 N N N 4.744 8.295 9.723 -1.771 0.586 0.515 MLE 3 C polymer 1 1 28 ? ? ? PRD_002368 O3 O3 O 0 1 N N N 5.958 8.348 9.523 -1.445 -0.129 1.450 MLE 3 O polymer 1 1 29 ? ? ? PRD_002368 N4 N4 N 0 1 N N N 4.082 9.254 10.411 -2.191 0.054 -0.661 DPN 4 N polymer 1 1 30 ? ? ? PRD_002368 C24 C24 C 0 1 N N R 4.829 10.414 10.890 -2.053 -1.421 -0.826 DPN 4 CA polymer 1 1 31 ? ? ? PRD_002368 C25 C25 C 0 1 N N N 5.524 11.198 9.751 -0.588 -1.739 -0.813 DPN 4 C polymer 1 1 32 ? ? ? PRD_002368 O4 O4 O 0 1 N N N 6.682 11.591 9.936 0.147 -1.025 -1.497 DPN 4 O polymer 1 1 33 ? ? ? PRD_002368 C26 C26 C 0 1 N N N 3.972 11.322 11.785 -2.872 -2.150 0.228 DPN 4 CB polymer 1 1 34 ? ? ? PRD_002368 C27 C27 C 0 1 Y N N 3.473 10.684 13.076 -4.336 -1.869 0.010 DPN 4 CG polymer 1 1 35 ? ? ? PRD_002368 C28 C28 C 0 1 Y N N 2.469 11.358 13.789 -5.084 -2.694 -0.809 DPN 4 CD1 polymer 1 1 36 ? ? ? PRD_002368 C29 C29 C 0 1 Y N N 3.986 9.499 13.607 -4.933 -0.789 0.633 DPN 4 CD2 polymer 1 1 37 ? ? ? PRD_002368 C30 C30 C 0 1 Y N N 2.013 10.867 15.008 -6.427 -2.437 -1.009 DPN 4 CE1 polymer 1 1 38 ? ? ? PRD_002368 C31 C31 C 0 1 Y N N 3.496 8.996 14.818 -6.276 -0.531 0.433 DPN 4 CE2 polymer 1 1 39 ? ? ? PRD_002368 C32 C32 C 0 1 Y N N 2.517 9.673 15.524 -7.023 -1.354 -0.390 DPN 4 CZ polymer 1 1 40 ? ? ? PRD_002368 H1 H1 H 0 1 N N N 6.777 12.051 7.816 -1.124 -4.349 0.712 MLE 1 HN1 polymer 1 1 41 ? ? ? PRD_002368 H2 H2 H 0 1 N N N 5.630 11.437 6.578 -1.085 -4.354 -1.067 MLE 1 HN2 polymer 1 1 42 ? ? ? PRD_002368 H3 H3 H 0 1 N N N 5.380 13.059 7.307 0.351 -4.858 -0.145 MLE 1 HN3 polymer 1 1 43 ? ? ? PRD_002368 H4 H4 H 0 1 N N N 2.999 11.191 9.343 1.124 -2.835 1.625 MLE 1 HA polymer 1 1 44 ? ? ? PRD_002368 H5 H5 H 0 1 N N N 3.427 12.909 6.908 2.312 -4.090 -0.179 MLE 1 HB2 polymer 1 1 45 ? ? ? PRD_002368 H6 H6 H 0 1 N N N 1.809 12.238 7.307 2.586 -2.556 -1.041 MLE 1 HB3 polymer 1 1 46 ? ? ? PRD_002368 H7 H7 H 0 1 N N N 2.084 13.309 9.611 3.761 -1.680 1.005 MLE 1 HG polymer 1 1 47 ? ? ? PRD_002368 H8 H8 H 0 0 N N N 1.352 15.522 8.732 4.467 -3.392 2.704 MLE 1 HD11 polymer 1 1 48 ? ? ? PRD_002368 H9 H9 H 0 0 N N N 1.953 15.057 7.105 2.711 -3.104 2.694 MLE 1 HD12 polymer 1 1 49 ? ? ? PRD_002368 H10 H10 H 0 0 N N N 0.595 14.151 7.853 3.378 -4.564 1.924 MLE 1 HD13 polymer 1 1 50 ? ? ? PRD_002368 H11 H11 H 0 0 N N N 3.558 15.286 9.774 5.029 -2.683 -0.875 MLE 1 HD21 polymer 1 1 51 ? ? ? PRD_002368 H12 H12 H 0 0 N N N 4.513 13.778 9.570 5.813 -3.034 0.683 MLE 1 HD22 polymer 1 1 52 ? ? ? PRD_002368 H13 H13 H 0 0 N N N 4.278 14.888 8.177 4.855 -4.292 -0.134 MLE 1 HD23 polymer 1 1 53 ? ? ? PRD_002368 H14 H14 H 0 1 N N N 4.990 9.510 7.194 2.314 -0.559 -1.065 PHE 2 H polymer 1 1 54 ? ? ? PRD_002368 H15 H15 H 0 1 N N N 2.698 7.683 6.670 2.181 1.519 0.948 PHE 2 HA polymer 1 1 55 ? ? ? PRD_002368 H16 H16 H 0 1 N N N 4.766 8.354 4.521 2.489 1.670 -2.087 PHE 2 HB2 polymer 1 1 56 ? ? ? PRD_002368 H17 H17 H 0 1 N N N 3.371 7.231 4.381 2.678 3.056 -0.986 PHE 2 HB3 polymer 1 1 57 ? ? ? PRD_002368 H18 H18 H 0 1 N N N 1.079 8.101 4.170 4.120 -0.129 -2.112 PHE 2 HD1 polymer 1 1 58 ? ? ? PRD_002368 H19 H19 H 0 1 N N N 4.407 10.772 4.530 4.576 3.198 0.518 PHE 2 HD2 polymer 1 1 59 ? ? ? PRD_002368 H20 H20 H 0 1 N N N -0.373 10.015 3.603 6.454 -0.786 -1.685 PHE 2 HE1 polymer 1 1 60 ? ? ? PRD_002368 H21 H21 H 0 1 N N N 2.948 12.676 4.016 6.910 2.541 0.944 PHE 2 HE2 polymer 1 1 61 ? ? ? PRD_002368 H22 H22 H 0 1 N N N 0.547 12.306 3.541 7.848 0.546 -0.153 PHE 2 HZ polymer 1 1 62 ? ? ? PRD_002368 H23 H23 H 0 1 N N N 6.120 5.049 7.611 1.438 3.470 1.384 MLE 3 HN1 polymer 1 1 63 ? ? ? PRD_002368 H24 H24 H 0 1 N N N 6.430 5.999 9.103 -0.090 4.383 1.430 MLE 3 HN2 polymer 1 1 64 ? ? ? PRD_002368 H25 H25 H 0 1 N N N 5.209 4.682 9.115 0.207 3.084 2.610 MLE 3 HN3 polymer 1 1 65 ? ? ? PRD_002368 H26 H26 H 0 1 N N N 2.981 7.597 8.713 -2.069 2.313 1.734 MLE 3 HA polymer 1 1 66 ? ? ? PRD_002368 H27 H27 H 0 1 N N N 4.276 5.855 10.847 -2.066 2.718 -1.289 MLE 3 HB2 polymer 1 1 67 ? ? ? PRD_002368 H28 H28 H 0 1 N N N 2.758 6.806 10.981 -3.529 2.526 -0.294 MLE 3 HB3 polymer 1 1 68 ? ? ? PRD_002368 H29 H29 H 0 1 N N N 3.253 4.362 9.221 -1.411 4.678 0.140 MLE 3 HG polymer 1 1 69 ? ? ? PRD_002368 H30 H30 H 0 0 N N N 1.534 3.327 10.692 -4.185 4.842 -1.123 MLE 3 HD11 polymer 1 1 70 ? ? ? PRD_002368 H31 H31 H 0 0 N N N 2.982 3.859 11.611 -3.114 6.223 -0.787 MLE 3 HD12 polymer 1 1 71 ? ? ? PRD_002368 H32 H32 H 0 0 N N N 1.475 4.835 11.665 -2.639 5.001 -1.990 MLE 3 HD13 polymer 1 1 72 ? ? ? PRD_002368 H33 H33 H 0 0 N N N 0.852 4.521 8.615 -2.665 4.009 2.172 MLE 3 HD21 polymer 1 1 73 ? ? ? PRD_002368 H34 H34 H 0 0 N N N 0.729 6.071 9.513 -3.129 5.644 1.643 MLE 3 HD22 polymer 1 1 74 ? ? ? PRD_002368 H35 H35 H 0 0 N N N 1.772 5.958 8.055 -4.200 4.263 1.307 MLE 3 HD23 polymer 1 1 75 ? ? ? PRD_002368 H36 H36 H 0 1 N N N 3.101 9.170 10.588 -2.567 0.582 -1.391 DPN 4 H polymer 1 1 76 ? ? ? PRD_002368 H37 H37 H 0 1 N N N 5.638 10.032 11.530 -2.458 -1.676 -1.823 DPN 4 HA polymer 1 1 77 ? ? ? PRD_002368 H38 H38 H 0 1 N N N 4.575 12.202 12.052 -2.692 -3.222 0.150 DPN 4 HB2 polymer 1 1 78 ? ? ? PRD_002368 H39 H39 H 0 1 N N N 3.095 11.642 11.203 -2.579 -1.803 1.219 DPN 4 HB3 polymer 1 1 79 ? ? ? PRD_002368 H40 H40 H 0 1 N N N 2.046 12.267 13.387 -4.619 -3.540 -1.292 DPN 4 HD1 polymer 1 1 80 ? ? ? PRD_002368 H41 H41 H 0 1 N N N 4.765 8.968 13.081 -4.350 -0.146 1.276 DPN 4 HD2 polymer 1 1 81 ? ? ? PRD_002368 H42 H42 H 0 1 N N N 1.263 11.415 15.559 -7.011 -3.081 -1.649 DPN 4 HE1 polymer 1 1 82 ? ? ? PRD_002368 H43 H43 H 0 1 N N N 3.887 8.067 15.206 -6.743 0.313 0.920 DPN 4 HE2 polymer 1 1 83 ? ? ? PRD_002368 H44 H44 H 0 1 N N N 2.148 9.282 16.461 -8.072 -1.152 -0.546 DPN 4 HZ polymer 1 1 84 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_002368 N1 C1 SING N N 1 PRD_002368 N1 C2 SING N N 2 PRD_002368 C1 H1 SING N N 3 PRD_002368 C1 H2 SING N N 4 PRD_002368 C1 H3 SING N N 5 PRD_002368 C2 C3 SING N N 6 PRD_002368 C2 C7 SING N N 7 PRD_002368 C2 H4 SING N N 8 PRD_002368 C3 C4 SING N N 9 PRD_002368 C3 H5 SING N N 10 PRD_002368 C3 H6 SING N N 11 PRD_002368 C4 C5 SING N N 12 PRD_002368 C4 C6 SING N N 13 PRD_002368 C4 H7 SING N N 14 PRD_002368 C5 H8 SING N N 15 PRD_002368 C5 H9 SING N N 16 PRD_002368 C5 H10 SING N N 17 PRD_002368 C6 H11 SING N N 18 PRD_002368 C6 H12 SING N N 19 PRD_002368 C6 H13 SING N N 20 PRD_002368 C7 O1 DOUB N N 21 PRD_002368 N2 C8 SING N N 22 PRD_002368 N2 H14 SING N N 23 PRD_002368 C8 C9 SING N N 24 PRD_002368 C8 C10 SING N N 25 PRD_002368 C8 H15 SING N N 26 PRD_002368 C9 O2 DOUB N N 27 PRD_002368 C10 C11 SING N N 28 PRD_002368 C10 H16 SING N N 29 PRD_002368 C10 H17 SING N N 30 PRD_002368 C11 C12 DOUB Y N 31 PRD_002368 C11 C13 SING Y N 32 PRD_002368 C12 C14 SING Y N 33 PRD_002368 C12 H18 SING N N 34 PRD_002368 C13 C15 DOUB Y N 35 PRD_002368 C13 H19 SING N N 36 PRD_002368 C14 C16 DOUB Y N 37 PRD_002368 C14 H20 SING N N 38 PRD_002368 C15 C16 SING Y N 39 PRD_002368 C15 H21 SING N N 40 PRD_002368 C16 H22 SING N N 41 PRD_002368 N3 C17 SING N N 42 PRD_002368 N3 C18 SING N N 43 PRD_002368 C17 H23 SING N N 44 PRD_002368 C17 H24 SING N N 45 PRD_002368 C17 H25 SING N N 46 PRD_002368 C18 C19 SING N N 47 PRD_002368 C18 C23 SING N N 48 PRD_002368 C18 H26 SING N N 49 PRD_002368 C19 C20 SING N N 50 PRD_002368 C19 H27 SING N N 51 PRD_002368 C19 H28 SING N N 52 PRD_002368 C20 C21 SING N N 53 PRD_002368 C20 C22 SING N N 54 PRD_002368 C20 H29 SING N N 55 PRD_002368 C21 H30 SING N N 56 PRD_002368 C21 H31 SING N N 57 PRD_002368 C21 H32 SING N N 58 PRD_002368 C22 H33 SING N N 59 PRD_002368 C22 H34 SING N N 60 PRD_002368 C22 H35 SING N N 61 PRD_002368 C23 O3 DOUB N N 62 PRD_002368 N4 C24 SING N N 63 PRD_002368 N4 H36 SING N N 64 PRD_002368 C24 C25 SING N N 65 PRD_002368 C24 C26 SING N N 66 PRD_002368 C24 H37 SING N N 67 PRD_002368 C25 O4 DOUB N N 68 PRD_002368 C26 C27 SING N N 69 PRD_002368 C26 H38 SING N N 70 PRD_002368 C26 H39 SING N N 71 PRD_002368 C27 C28 DOUB Y N 72 PRD_002368 C27 C29 SING Y N 73 PRD_002368 C28 C30 SING Y N 74 PRD_002368 C28 H40 SING N N 75 PRD_002368 C29 C31 DOUB Y N 76 PRD_002368 C29 H41 SING N N 77 PRD_002368 C30 C32 DOUB Y N 78 PRD_002368 C30 H42 SING N N 79 PRD_002368 C31 C32 SING Y N 80 PRD_002368 C31 H43 SING N N 81 PRD_002368 C32 H44 SING N N 82 PRD_002368 N1 C25 SING N N 83 PRD_002368 C7 N2 SING N N 84 PRD_002368 C9 N3 SING N N 85 PRD_002368 C23 N4 SING N N 86 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_002368 InChI InChI 1.06 "InChI=1S/C32H44N4O4/c1-21(2)17-27-29(37)33-26(20-24-15-11-8-12-16-24)32(40)36(6)28(18-22(3)4)30(38)34-25(31(39)35(27)5)19-23-13-9-7-10-14-23/h7-16,21-22,25-28H,17-20H2,1-6H3,(H,33,37)(H,34,38)/t25-,26+,27-,28-/m0/s1" PRD_002368 InChIKey InChI 1.06 LSLKDWVWAHUJKJ-PUHABZHSSA-N PRD_002368 SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@@H]1N(C)C(=O)[C@@H](Cc2ccccc2)NC(=O)[C@H](CC(C)C)N(C)C(=O)[C@H](Cc3ccccc3)NC1=O" PRD_002368 SMILES CACTVS 3.385 "CC(C)C[CH]1N(C)C(=O)[CH](Cc2ccccc2)NC(=O)[CH](CC(C)C)N(C)C(=O)[CH](Cc3ccccc3)NC1=O" PRD_002368 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@H]1C(=O)N[C@H](C(=O)N([C@H](C(=O)N[C@@H](C(=O)N1C)Cc2ccccc2)CC(C)C)C)Cc3ccccc3" PRD_002368 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC1C(=O)NC(C(=O)N(C(C(=O)NC(C(=O)N1C)Cc2ccccc2)CC(C)C)C)Cc3ccccc3" # _pdbx_chem_comp_identifier.comp_id PRD_002368 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{R},6~{S},9~{S},12~{S})-1,7-dimethyl-6,12-bis(2-methylpropyl)-3,9-bis(phenylmethyl)-1,4,7,10-tetrazacyclododecane-2,5,8,11-tetrone" #