data_PRDCC_002385 # _chem_comp.id PRD_002385 _chem_comp.name "Papain-like protease peptide inhibitor VIR250" _chem_comp.formula "C23 H32 N6 O6 S" _chem_comp.formula_weight 520.602 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_002385 C1 C1 C 0 1 N N N 21.655 68.440 -1.912 -4.779 3.249 -0.922 ACE 1 C polymer 1 1 1 ? ? ? PRD_002385 O1 O1 O 0 1 N N N 21.951 68.455 -3.053 -4.175 2.586 -1.739 ACE 1 O polymer 1 1 2 ? ? ? PRD_002385 C2 C2 C 0 1 N N N 20.264 67.993 -1.473 -5.804 4.255 -1.377 ACE 1 CH3 polymer 1 1 3 ? ? ? PRD_002385 C3 C3 C 0 1 N N N 21.770 70.182 0.929 -2.197 2.450 0.259 UB4 2 C polymer 1 1 4 ? ? ? PRD_002385 C4 C4 C 0 1 N N S 22.257 68.821 0.470 -3.544 2.099 0.836 UB4 2 CA polymer 1 1 5 ? ? ? PRD_002385 C5 C5 C 0 1 N N N 23.468 68.462 1.322 -3.957 0.706 0.356 UB4 2 CB polymer 1 1 6 ? ? ? PRD_002385 C6 C6 C 0 1 N N N 23.514 66.975 1.657 -5.264 0.297 1.039 UB4 2 CG polymer 1 1 7 ? ? ? PRD_002385 C7 C7 C 0 1 Y N N 23.806 66.190 0.391 -5.671 -1.075 0.566 UB4 2 CD polymer 1 1 8 ? ? ? PRD_002385 C8 C8 C 0 1 Y N N 25.950 65.098 -2.336 -5.519 -4.649 1.013 UB4 2 CT1 polymer 1 1 9 ? ? ? PRD_002385 C9 C9 C 0 1 Y N N 23.447 63.901 -2.761 -7.107 -4.183 -1.214 UB4 2 CT2 polymer 1 1 10 ? ? ? PRD_002385 C10 C10 C 0 1 Y N N 23.654 64.737 -1.657 -6.558 -3.105 -0.525 UB4 2 CZ2 polymer 1 1 11 ? ? ? PRD_002385 C11 C11 C 0 1 Y N N 24.889 65.333 -1.438 -5.754 -3.322 0.600 UB4 2 CZ1 polymer 1 1 12 ? ? ? PRD_002385 C12 C12 C 0 1 Y N N 25.738 64.274 -3.424 -6.064 -5.692 0.326 UB4 2 CI1 polymer 1 1 13 ? ? ? PRD_002385 C13 C13 C 0 1 Y N N 24.497 63.671 -3.647 -6.859 -5.470 -0.789 UB4 2 CI2 polymer 1 1 14 ? ? ? PRD_002385 N1 N1 N 0 1 Y N N 25.011 66.178 -0.274 -5.315 -2.165 1.132 UB4 2 NE1 polymer 1 1 15 ? ? ? PRD_002385 N2 N2 N 0 1 N N N 22.624 68.854 -0.926 -4.536 3.081 0.393 UB4 2 N polymer 1 1 16 ? ? ? PRD_002385 O2 O2 O 0 1 N N N 22.301 71.184 0.582 -2.123 3.173 -0.711 UB4 2 O polymer 1 1 17 ? ? ? PRD_002385 S1 S1 S 0 1 Y N N 22.681 65.240 -0.416 -6.669 -1.367 -0.787 UB4 2 SE1 polymer 1 1 18 ? ? ? PRD_002385 N3 N3 N 0 1 N N N 20.632 70.207 1.822 -1.075 1.960 0.822 DPP 3 N polymer 1 1 19 ? ? ? PRD_002385 C14 C14 C 0 1 N N S 20.126 71.463 2.311 0.235 2.302 0.262 DPP 3 CA polymer 1 1 20 ? ? ? PRD_002385 C15 C15 C 0 1 N N N 20.211 71.271 3.811 1.229 1.225 0.615 DPP 3 C polymer 1 1 21 ? ? ? PRD_002385 O3 O3 O 0 1 N N N 19.259 70.955 4.443 0.878 0.267 1.271 DPP 3 O polymer 1 1 22 ? ? ? PRD_002385 C16 C16 C 0 1 N N N 18.683 71.660 1.863 0.704 3.638 0.840 DPP 3 CB polymer 1 1 23 ? ? ? PRD_002385 N4 N4 N 0 1 N N N 18.499 71.061 0.552 -0.321 4.662 0.599 DPP 3 NG polymer 1 1 24 ? ? ? PRD_002385 N5 N5 N 0 1 N N N 21.470 71.462 4.492 2.508 1.327 0.203 GLY 4 N polymer 1 1 25 ? ? ? PRD_002385 C17 C17 C 0 1 N N N 21.403 71.218 5.926 3.474 0.281 0.547 GLY 4 CA polymer 1 1 26 ? ? ? PRD_002385 C18 C18 C 0 1 N N N 21.809 72.442 6.755 4.821 0.632 -0.030 GLY 4 C polymer 1 1 27 ? ? ? PRD_002385 O4 O4 O 0 1 N N N 22.196 73.425 6.248 4.961 1.656 -0.665 GLY 4 O polymer 1 1 28 ? ? ? PRD_002385 N6 N6 N 0 1 N N N 21.780 72.498 8.199 5.871 -0.191 0.161 GVE 5 N polymer 1 1 29 ? ? ? PRD_002385 C19 C19 C 0 1 N N N 22.148 73.735 8.831 7.181 0.150 -0.400 GVE 5 C1 polymer 1 1 30 ? ? ? PRD_002385 C20 C20 C 0 1 N N N 22.805 73.505 10.204 8.190 -0.942 -0.041 GVE 5 CB polymer 1 1 31 ? ? ? PRD_002385 C21 C21 C 0 1 N N N 22.238 73.181 11.570 9.558 -0.586 -0.626 GVE 5 CG polymer 1 1 32 ? ? ? PRD_002385 C22 C22 C 0 1 N N N 20.749 73.041 11.984 10.552 -1.662 -0.273 GVE 5 C polymer 1 1 33 ? ? ? PRD_002385 O5 O5 O 0 1 N N N 19.780 72.834 11.048 11.825 -1.561 -0.684 GVE 5 OXT polymer 1 1 34 ? ? ? PRD_002385 O6 O6 O 0 1 N N N 20.289 73.085 13.054 10.202 -2.616 0.380 GVE 5 O polymer 1 1 35 ? ? ? PRD_002385 C23 C23 C 0 1 N N N 18.694 72.049 11.453 12.727 -2.634 -0.306 GVE 5 CH3 polymer 1 1 36 ? ? ? PRD_002385 H1 H1 H 0 1 N N N 19.670 67.720 -2.358 -5.864 4.246 -2.465 ACE 1 H1 polymer 1 1 37 ? ? ? PRD_002385 H2 H2 H 0 1 N N N 20.352 67.122 -0.807 -6.776 3.999 -0.957 ACE 1 H2 polymer 1 1 38 ? ? ? PRD_002385 H3 H3 H 0 1 N N N 19.767 68.815 -0.937 -5.512 5.249 -1.038 ACE 1 H3 polymer 1 1 39 ? ? ? PRD_002385 H4 H4 H 0 1 N N N 21.464 68.077 0.638 -3.487 2.105 1.925 UB4 2 HA polymer 1 1 40 ? ? ? PRD_002385 H5 H5 H 0 1 N N N 24.381 68.730 0.771 -4.101 0.721 -0.724 UB4 2 HB1 polymer 1 1 41 ? ? ? PRD_002385 H6 H6 H 0 1 N N N 23.424 69.036 2.260 -3.176 -0.012 0.608 UB4 2 HB2 polymer 1 1 42 ? ? ? PRD_002385 H7 H7 H 0 1 N N N 22.544 66.660 2.070 -5.120 0.282 2.119 UB4 2 HG1 polymer 1 1 43 ? ? ? PRD_002385 H8 H8 H 0 1 N N N 24.306 66.788 2.397 -6.045 1.015 0.787 UB4 2 HG2 polymer 1 1 44 ? ? ? PRD_002385 H9 H9 H 0 1 N N N 26.915 65.556 -2.175 -4.902 -4.840 1.878 UB4 2 HT1 polymer 1 1 45 ? ? ? PRD_002385 H10 H10 H 0 1 N N N 22.484 63.440 -2.924 -7.726 -4.011 -2.082 UB4 2 HT2 polymer 1 1 46 ? ? ? PRD_002385 H11 H11 H 0 1 N N N 26.547 64.092 -4.116 -5.875 -6.703 0.654 UB4 2 HI1 polymer 1 1 47 ? ? ? PRD_002385 H12 H12 H 0 1 N N N 24.353 63.029 -4.503 -7.285 -6.306 -1.323 UB4 2 HI2 polymer 1 1 48 ? ? ? PRD_002385 H13 H13 H 0 1 N N N 23.535 69.159 -1.205 -5.019 3.612 1.047 UB4 2 H2 polymer 1 1 49 ? ? ? PRD_002385 H14 H14 H 0 1 N N N 20.196 69.351 2.100 -1.134 1.382 1.599 DPP 3 H polymer 1 1 50 ? ? ? PRD_002385 H15 H15 H 0 1 N N N 20.751 72.310 1.990 0.156 2.382 -0.822 DPP 3 HA polymer 1 1 51 ? ? ? PRD_002385 H16 H16 H 0 1 N N N 18.006 71.179 2.584 0.868 3.533 1.912 DPP 3 HB2 polymer 1 1 52 ? ? ? PRD_002385 H17 H17 H 0 1 N N N 18.459 72.736 1.810 1.635 3.936 0.357 DPP 3 HB3 polymer 1 1 53 ? ? ? PRD_002385 H18 H18 H 0 1 N N N 17.552 71.189 0.256 -1.211 4.380 0.981 DPP 3 HG1 polymer 1 1 54 ? ? ? PRD_002385 H19 H19 H 0 1 N N N 19.115 71.498 -0.103 -0.035 5.556 0.971 DPP 3 HG2 polymer 1 1 55 ? ? ? PRD_002385 H20 H20 H 0 1 N N N 22.309 71.736 4.023 2.789 2.093 -0.321 GLY 4 H polymer 1 1 56 ? ? ? PRD_002385 H21 H21 H 0 1 N N N 20.371 70.942 6.188 3.553 0.201 1.631 GLY 4 HA2 polymer 1 1 57 ? ? ? PRD_002385 H22 H22 H 0 1 N N N 22.079 70.386 6.173 3.140 -0.672 0.135 GLY 4 HA3 polymer 1 1 58 ? ? ? PRD_002385 H23 H23 H 0 1 N N N 21.512 71.701 8.741 5.760 -1.010 0.669 GVE 5 H2 polymer 1 1 59 ? ? ? PRD_002385 H24 H24 H 0 1 N N N 22.858 74.269 8.182 7.102 0.230 -1.484 GVE 5 HA1 polymer 1 1 60 ? ? ? PRD_002385 H25 H25 H 0 1 N N N 21.244 74.347 8.967 7.515 1.103 0.012 GVE 5 HA2 polymer 1 1 61 ? ? ? PRD_002385 H26 H26 H 0 1 N N N 23.506 72.679 10.016 8.268 -1.023 1.043 GVE 5 HB1 polymer 1 1 62 ? ? ? PRD_002385 H27 H27 H 0 1 N N N 23.370 74.433 10.376 7.856 -1.895 -0.452 GVE 5 HB2 polymer 1 1 63 ? ? ? PRD_002385 H28 H28 H 0 1 N N N 22.692 72.215 11.836 9.479 -0.506 -1.711 GVE 5 HG1 polymer 1 1 64 ? ? ? PRD_002385 H29 H29 H 0 1 N N N 22.636 73.967 12.229 9.892 0.367 -0.215 GVE 5 HG2 polymer 1 1 65 ? ? ? PRD_002385 H30 H30 H 0 0 N N N 17.981 71.951 10.621 12.775 -2.704 0.780 GVE 5 HH31 polymer 1 1 66 ? ? ? PRD_002385 H31 H31 H 0 0 N N N 19.052 71.052 11.748 12.362 -3.576 -0.715 GVE 5 HH32 polymer 1 1 67 ? ? ? PRD_002385 H32 H32 H 0 0 N N N 18.195 72.527 12.309 13.722 -2.428 -0.701 GVE 5 HH33 polymer 1 1 68 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_002385 C1 O1 DOUB N N 1 PRD_002385 C1 C2 SING N N 2 PRD_002385 C2 H1 SING N N 3 PRD_002385 C2 H2 SING N N 4 PRD_002385 C2 H3 SING N N 5 PRD_002385 C13 C12 DOUB Y N 6 PRD_002385 C13 C9 SING Y N 7 PRD_002385 C12 C8 SING Y N 8 PRD_002385 C9 C10 DOUB Y N 9 PRD_002385 C8 C11 DOUB Y N 10 PRD_002385 C10 C11 SING Y N 11 PRD_002385 C10 S1 SING Y N 12 PRD_002385 C11 N1 SING Y N 13 PRD_002385 N2 C4 SING N N 14 PRD_002385 S1 C7 SING Y N 15 PRD_002385 N1 C7 DOUB Y N 16 PRD_002385 C7 C6 SING N N 17 PRD_002385 C4 C3 SING N N 18 PRD_002385 C4 C5 SING N N 19 PRD_002385 O2 C3 DOUB N N 20 PRD_002385 C5 C6 SING N N 21 PRD_002385 C4 H4 SING N N 22 PRD_002385 C5 H5 SING N N 23 PRD_002385 C5 H6 SING N N 24 PRD_002385 C6 H7 SING N N 25 PRD_002385 C6 H8 SING N N 26 PRD_002385 C8 H9 SING N N 27 PRD_002385 C9 H10 SING N N 28 PRD_002385 C12 H11 SING N N 29 PRD_002385 C13 H12 SING N N 30 PRD_002385 N2 H13 SING N N 31 PRD_002385 N3 C14 SING N N 32 PRD_002385 N3 H14 SING N N 33 PRD_002385 C14 C15 SING N N 34 PRD_002385 C14 C16 SING N N 35 PRD_002385 C14 H15 SING N N 36 PRD_002385 C15 O3 DOUB N N 37 PRD_002385 C16 N4 SING N N 38 PRD_002385 C16 H16 SING N N 39 PRD_002385 C16 H17 SING N N 40 PRD_002385 N4 H18 SING N N 41 PRD_002385 N4 H19 SING N N 42 PRD_002385 N5 C17 SING N N 43 PRD_002385 N5 H20 SING N N 44 PRD_002385 C17 C18 SING N N 45 PRD_002385 C17 H21 SING N N 46 PRD_002385 C17 H22 SING N N 47 PRD_002385 C18 O4 DOUB N N 48 PRD_002385 N6 C19 SING N N 49 PRD_002385 N6 H23 SING N N 50 PRD_002385 C19 C20 SING N N 51 PRD_002385 C19 H24 SING N N 52 PRD_002385 C19 H25 SING N N 53 PRD_002385 C20 C21 SING N N 54 PRD_002385 C20 H26 SING N N 55 PRD_002385 C20 H27 SING N N 56 PRD_002385 C21 C22 SING N N 57 PRD_002385 C21 H28 SING N N 58 PRD_002385 C21 H29 SING N N 59 PRD_002385 C22 O5 SING N N 60 PRD_002385 C22 O6 DOUB N N 61 PRD_002385 O5 C23 SING N N 62 PRD_002385 C23 H30 SING N N 63 PRD_002385 C23 H31 SING N N 64 PRD_002385 C23 H32 SING N N 65 PRD_002385 C1 N2 SING N N 66 PRD_002385 C3 N3 SING N N 67 PRD_002385 C15 N5 SING N N 68 PRD_002385 C18 N6 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_002385 InChI InChI 1.06 "InChI=1S/C23H32N6O6S/c1-14(30)27-16(9-10-20-28-15-6-3-4-7-18(15)36-20)23(34)29-17(12-24)22(33)26-13-19(31)25-11-5-8-21(32)35-2/h3-4,6-7,16-17H,5,8-13,24H2,1-2H3,(H,25,31)(H,26,33)(H,27,30)(H,29,34)/t16-,17-/m0/s1" PRD_002385 InChIKey InChI 1.06 QVVUIVUVZUMKFL-IRXDYDNUSA-N PRD_002385 SMILES_CANONICAL CACTVS 3.385 "COC(=O)CCCNC(=O)CNC(=O)[C@H](CN)NC(=O)[C@H](CCc1sc2ccccc2n1)NC(C)=O" PRD_002385 SMILES CACTVS 3.385 "COC(=O)CCCNC(=O)CNC(=O)[CH](CN)NC(=O)[CH](CCc1sc2ccccc2n1)NC(C)=O" PRD_002385 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@@H](CCc1nc2ccccc2s1)C(=O)N[C@@H](CN)C(=O)NCC(=O)NCCCC(=O)OC" PRD_002385 SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NC(CCc1nc2ccccc2s1)C(=O)NC(CN)C(=O)NCC(=O)NCCCC(=O)OC" # _pdbx_chem_comp_identifier.comp_id PRD_002385 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "methyl 4-[2-[[(2~{S})-2-[[(2~{S})-2-acetamido-4-(1,3-benzothiazol-2-yl)butanoyl]amino]-3-azanyl-propanoyl]amino]ethanoylamino]butanoate" #