data_PRDCC_002390
#
_chem_comp.id PRD_002390
_chem_comp.name "Papain-like protease peptide inhibitor VIR251"
_chem_comp.formula "C22 H33 N5 O7"
_chem_comp.formula_weight 479.527
_chem_comp.pdbx_release_status REF_ONLY
_chem_comp.type peptide-like
_chem_comp.pdbx_type ?
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge ?
_chem_comp.pdbx_initial_date ?
_chem_comp.pdbx_modified_date ?
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ?
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag ?
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag ?
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_pcm ?
_chem_comp.pdbx_processing_site ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_residue_numbering
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_polymer_type
_chem_comp_atom.pdbx_ref_id
_chem_comp_atom.pdbx_component_id
_chem_comp_atom.pdbx_ordinal
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
PRD_002390 C1 C1 C 0 1 N N N 5.437 -30.167 -41.496 5.520 2.500 0.958 ACY 1 C polymer 1 1 1 ? ? ?
PRD_002390 O1 O1 O 0 1 N N N 6.139 -31.112 -41.351 4.865 1.886 1.774 ACY 1 O polymer 1 1 2 ? ? ?
PRD_002390 C2 C2 C 0 1 N N N 4.077 -30.285 -42.179 6.615 3.429 1.416 ACY 1 CH3 polymer 1 1 3 ? ? ?
PRD_002390 N1 N1 N 0 1 N N N 5.865 -28.869 -41.028 5.272 2.348 -0.358 73O 2 N polymer 1 1 4 ? ? ?
PRD_002390 C3 C3 C 0 1 N N S 7.152 -28.745 -40.389 4.211 1.440 -0.803 73O 2 CA polymer 1 1 5 ? ? ?
PRD_002390 C4 C4 C 0 1 N N N 6.913 -28.605 -38.893 2.891 1.892 -0.233 73O 2 C polymer 1 1 6 ? ? ?
PRD_002390 C5 C5 C 0 1 N N N 7.908 -27.523 -40.933 4.517 0.022 -0.318 73O 2 C52 polymer 1 1 7 ? ? ?
PRD_002390 C6 C6 C 0 1 N N N 8.026 -27.554 -42.463 5.793 -0.484 -0.993 73O 2 C54 polymer 1 1 8 ? ? ?
PRD_002390 C7 C7 C 0 1 Y N N 8.786 -28.770 -42.990 6.094 -1.882 -0.516 73O 2 C57 polymer 1 1 9 ? ? ?
PRD_002390 C8 C8 C 0 1 Y N N 10.089 -28.996 -42.577 5.579 -2.970 -1.196 73O 2 C60 polymer 1 1 10 ? ? ?
PRD_002390 C9 C9 C 0 1 Y N N 10.769 -30.108 -43.064 5.853 -4.251 -0.760 73O 2 C61 polymer 1 1 11 ? ? ?
PRD_002390 C10 C10 C 0 1 Y N N 10.162 -30.977 -43.959 6.647 -4.446 0.361 73O 2 C62 polymer 1 1 12 ? ? ?
PRD_002390 C11 C11 C 0 1 Y N N 8.864 -30.743 -44.387 7.163 -3.353 1.042 73O 2 C63 polymer 1 1 13 ? ? ?
PRD_002390 C12 C12 C 0 1 Y N N 8.185 -29.637 -43.895 6.890 -2.073 0.598 73O 2 C64 polymer 1 1 14 ? ? ?
PRD_002390 O2 O2 O 0 1 N N N 10.870 -32.084 -44.443 6.918 -5.706 0.793 73O 2 O69 polymer 1 1 15 ? ? ?
PRD_002390 O3 O3 O 0 1 N N N 5.841 -28.362 -38.437 2.866 2.622 0.735 73O 2 O polymer 1 1 16 ? ? ?
PRD_002390 N2 N2 N 0 1 N N N 8.028 -28.818 -38.013 1.738 1.486 -0.800 DPP 3 N polymer 1 1 17 ? ? ?
PRD_002390 C13 C13 C 0 1 N N S 7.885 -28.716 -36.572 0.455 1.925 -0.247 DPP 3 CA polymer 1 1 18 ? ? ?
PRD_002390 C14 C14 C 0 1 N N N 9.103 -27.935 -36.116 -0.615 0.925 -0.603 DPP 3 C polymer 1 1 19 ? ? ?
PRD_002390 O4 O4 O 0 1 N N N 10.098 -28.427 -35.684 -0.333 -0.058 -1.254 DPP 3 O polymer 1 1 20 ? ? ?
PRD_002390 C15 C15 C 0 1 N N N 7.914 -30.100 -35.923 0.089 3.292 -0.830 DPP 3 CB polymer 1 1 21 ? ? ?
PRD_002390 N3 N3 N 0 1 N N N 6.664 -30.771 -36.227 1.186 4.238 -0.586 DPP 3 NG polymer 1 1 22 ? ? ?
PRD_002390 N4 N4 N 0 1 N N N 9.004 -26.514 -36.216 -1.885 1.123 -0.196 GLY 4 N polymer 1 1 23 ? ? ?
PRD_002390 C16 C16 C 0 1 N N N 10.133 -25.706 -35.829 -2.924 0.150 -0.542 GLY 4 CA polymer 1 1 24 ? ? ?
PRD_002390 C17 C17 C 0 1 N N N 9.861 -24.992 -34.505 -4.244 0.602 0.027 GLY 4 C polymer 1 1 25 ? ? ?
PRD_002390 O5 O5 O 0 1 N N N 8.759 -24.695 -34.153 -4.310 1.635 0.660 GLY 4 O polymer 1 1 26 ? ? ?
PRD_002390 N5 N5 N 0 1 N N N 11.023 -24.716 -33.705 -5.352 -0.141 -0.166 GVE 5 N polymer 1 1 27 ? ? ?
PRD_002390 C18 C18 C 0 1 N N N 11.030 -24.037 -32.420 -6.635 0.298 0.387 GVE 5 C1 polymer 1 1 28 ? ? ?
PRD_002390 C19 C19 C 0 1 N N N 11.986 -22.931 -32.821 -7.721 -0.717 0.026 GVE 5 CB polymer 1 1 29 ? ? ?
PRD_002390 C20 C20 C 0 1 N N N 13.388 -22.825 -32.263 -9.061 -0.258 0.604 GVE 5 CG polymer 1 1 30 ? ? ?
PRD_002390 C21 C21 C 0 1 N N N 13.685 -23.782 -31.136 -10.130 -1.259 0.249 GVE 5 C polymer 1 1 31 ? ? ?
PRD_002390 O6 O6 O 0 1 N N N 14.265 -25.037 -31.325 -11.395 -1.062 0.653 GVE 5 OXT polymer 1 1 32 ? ? ?
PRD_002390 O7 O7 O 0 1 N N N 13.405 -23.387 -30.060 -9.849 -2.238 -0.401 GVE 5 O polymer 1 1 33 ? ? ?
PRD_002390 C22 C22 C 0 1 N N N 14.940 -25.501 -30.189 -12.372 -2.066 0.274 GVE 5 CH3 polymer 1 1 34 ? ? ?
PRD_002390 H1 H1 H 0 1 N N N 3.905 -31.330 -42.478 6.669 3.418 2.504 ACY 1 H1 polymer 1 1 35 ? ? ?
PRD_002390 H2 H2 H 0 1 N N N 3.288 -29.969 -41.481 7.567 3.100 1.001 ACY 1 H2 polymer 1 1 36 ? ? ?
PRD_002390 H3 H3 H 0 1 N N N 4.057 -29.641 -43.071 6.399 4.441 1.074 ACY 1 H3 polymer 1 1 37 ? ? ?
PRD_002390 H4 H4 H 0 1 N N N 5.278 -28.068 -41.145 5.795 2.839 -1.010 73O 2 H2 polymer 1 1 38 ? ? ?
PRD_002390 H5 H5 H 0 1 N N N 7.755 -29.647 -40.573 4.159 1.449 -1.892 73O 2 HA polymer 1 1 39 ? ? ?
PRD_002390 H6 H6 H 0 1 N N N 7.369 -26.611 -40.637 4.657 0.030 0.763 73O 2 H5 polymer 1 1 40 ? ? ?
PRD_002390 H7 H7 H 0 1 N N N 8.919 -27.509 -40.499 3.686 -0.636 -0.572 73O 2 H6 polymer 1 1 41 ? ? ?
PRD_002390 H8 H8 H 0 1 N N N 8.553 -26.645 -42.790 5.653 -0.492 -2.075 73O 2 H7 polymer 1 1 42 ? ? ?
PRD_002390 H9 H9 H 0 1 N N N 7.012 -27.565 -42.890 6.624 0.174 -0.739 73O 2 H8 polymer 1 1 43 ? ? ?
PRD_002390 H10 H10 H 0 1 N N N 10.570 -28.319 -41.887 4.960 -2.817 -2.068 73O 2 H9 polymer 1 1 44 ? ? ?
PRD_002390 H11 H11 H 0 1 N N N 11.782 -30.297 -42.741 5.450 -5.101 -1.291 73O 2 H10 polymer 1 1 45 ? ? ?
PRD_002390 H12 H12 H 0 1 N N N 8.389 -31.410 -45.091 7.782 -3.502 1.914 73O 2 H11 polymer 1 1 46 ? ? ?
PRD_002390 H13 H13 H 0 1 N N N 7.173 -29.447 -44.221 7.292 -1.222 1.128 73O 2 H12 polymer 1 1 47 ? ? ?
PRD_002390 H14 H14 H 0 1 N N N 11.737 -32.100 -44.055 7.716 -6.091 0.404 73O 2 H13 polymer 1 1 48 ? ? ?
PRD_002390 H15 H15 H 0 1 N N N 8.922 -29.041 -38.401 1.758 0.902 -1.575 DPP 3 H polymer 1 1 49 ? ? ?
PRD_002390 H16 H16 H 0 1 N N N 6.962 -28.185 -36.296 0.534 2.002 0.837 DPP 3 HA polymer 1 1 50 ? ? ?
PRD_002390 H17 H17 H 0 1 N N N 8.756 -30.682 -36.325 -0.077 3.197 -1.903 DPP 3 HB2 polymer 1 1 51 ? ? ?
PRD_002390 H18 H18 H 0 1 N N N 8.026 -29.998 -34.834 -0.820 3.659 -0.352 DPP 3 HB3 polymer 1 1 52 ? ? ?
PRD_002390 H19 H19 H 0 1 N N N 6.663 -31.680 -35.810 2.055 3.889 -0.964 DPP 3 HG1 polymer 1 1 53 ? ? ?
PRD_002390 H20 H20 H 0 1 N N N 5.902 -30.237 -35.862 0.969 5.148 -0.962 DPP 3 HG2 polymer 1 1 54 ? ? ?
PRD_002390 H21 H21 H 0 1 N N N 8.164 -26.086 -36.550 -2.110 1.909 0.325 GLY 4 H polymer 1 1 55 ? ? ?
PRD_002390 H22 H22 H 0 1 N N N 11.017 -26.351 -35.716 -3.004 0.073 -1.627 GLY 4 HA2 polymer 1 1 56 ? ? ?
PRD_002390 H23 H23 H 0 1 N N N 10.325 -24.956 -36.611 -2.664 -0.823 -0.127 GLY 4 HA3 polymer 1 1 57 ? ? ?
PRD_002390 H24 H24 H 0 1 N N N 11.906 -25.018 -34.065 -5.299 -0.967 -0.672 GVE 5 H2 polymer 1 1 58 ? ? ?
PRD_002390 H25 H25 H 0 1 N N N 10.038 -23.657 -32.136 -6.555 0.375 1.472 GVE 5 HA1 polymer 1 1 59 ? ? ?
PRD_002390 H26 H26 H 0 1 N N N 11.427 -24.667 -31.610 -6.895 1.272 -0.028 GVE 5 HA2 polymer 1 1 60 ? ? ?
PRD_002390 H27 H27 H 0 1 N N N 12.097 -23.004 -33.913 -7.800 -0.794 -1.058 GVE 5 HB1 polymer 1 1 61 ? ? ?
PRD_002390 H28 H28 H 0 1 N N N 11.484 -21.986 -32.566 -7.460 -1.691 0.442 GVE 5 HB2 polymer 1 1 62 ? ? ?
PRD_002390 H29 H29 H 0 1 N N N 14.099 -23.023 -33.079 -8.981 -0.182 1.689 GVE 5 HG1 polymer 1 1 63 ? ? ?
PRD_002390 H30 H30 H 0 1 N N N 13.533 -21.800 -31.891 -9.321 0.715 0.189 GVE 5 HG2 polymer 1 1 64 ? ? ?
PRD_002390 H31 H31 H 0 0 N N N 15.374 -26.490 -30.398 -13.351 -1.786 0.664 GVE 5 HH31 polymer 1 1 65 ? ? ?
PRD_002390 H32 H32 H 0 0 N N N 15.743 -24.796 -29.926 -12.420 -2.135 -0.812 GVE 5 HH32 polymer 1 1 66 ? ? ?
PRD_002390 H33 H33 H 0 0 N N N 14.233 -25.581 -29.350 -12.080 -3.032 0.687 GVE 5 HH33 polymer 1 1 67 ? ? ?
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PRD_002390 C1 O1 DOUB N N 1
PRD_002390 C1 C2 SING N N 2
PRD_002390 C2 H1 SING N N 3
PRD_002390 C2 H2 SING N N 4
PRD_002390 C2 H3 SING N N 5
PRD_002390 N1 C3 SING N N 6
PRD_002390 C12 C11 DOUB Y N 7
PRD_002390 C12 C7 SING Y N 8
PRD_002390 O3 C4 DOUB N N 9
PRD_002390 C11 C10 SING Y N 10
PRD_002390 C3 C4 SING N N 11
PRD_002390 C3 C5 SING N N 12
PRD_002390 C6 C7 SING N N 13
PRD_002390 C6 C5 SING N N 14
PRD_002390 C7 C8 DOUB Y N 15
PRD_002390 C10 O2 SING N N 16
PRD_002390 C10 C9 DOUB Y N 17
PRD_002390 C8 C9 SING Y N 18
PRD_002390 N1 H4 SING N N 19
PRD_002390 C3 H5 SING N N 20
PRD_002390 C5 H6 SING N N 21
PRD_002390 C5 H7 SING N N 22
PRD_002390 C6 H8 SING N N 23
PRD_002390 C6 H9 SING N N 24
PRD_002390 C8 H10 SING N N 25
PRD_002390 C9 H11 SING N N 26
PRD_002390 C11 H12 SING N N 27
PRD_002390 C12 H13 SING N N 28
PRD_002390 O2 H14 SING N N 29
PRD_002390 N2 C13 SING N N 30
PRD_002390 N2 H15 SING N N 31
PRD_002390 C13 C14 SING N N 32
PRD_002390 C13 C15 SING N N 33
PRD_002390 C13 H16 SING N N 34
PRD_002390 C14 O4 DOUB N N 35
PRD_002390 C15 N3 SING N N 36
PRD_002390 C15 H17 SING N N 37
PRD_002390 C15 H18 SING N N 38
PRD_002390 N3 H19 SING N N 39
PRD_002390 N3 H20 SING N N 40
PRD_002390 N4 C16 SING N N 41
PRD_002390 N4 H21 SING N N 42
PRD_002390 C16 C17 SING N N 43
PRD_002390 C16 H22 SING N N 44
PRD_002390 C16 H23 SING N N 45
PRD_002390 C17 O5 DOUB N N 46
PRD_002390 N5 C18 SING N N 47
PRD_002390 N5 H24 SING N N 48
PRD_002390 C18 C19 SING N N 49
PRD_002390 C18 H25 SING N N 50
PRD_002390 C18 H26 SING N N 51
PRD_002390 C19 C20 SING N N 52
PRD_002390 C19 H27 SING N N 53
PRD_002390 C19 H28 SING N N 54
PRD_002390 C20 C21 SING N N 55
PRD_002390 C20 H29 SING N N 56
PRD_002390 C20 H30 SING N N 57
PRD_002390 C21 O6 SING N N 58
PRD_002390 C21 O7 DOUB N N 59
PRD_002390 O6 C22 SING N N 60
PRD_002390 C22 H31 SING N N 61
PRD_002390 C22 H32 SING N N 62
PRD_002390 C22 H33 SING N N 63
PRD_002390 C1 N1 SING N N 64
PRD_002390 C4 N2 SING N N 65
PRD_002390 C14 N4 SING N N 66
PRD_002390 C17 N5 SING N N 67
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PRD_002390 InChI InChI 1.06 "InChI=1S/C22H33N5O7/c1-14(28)26-17(10-7-15-5-8-16(29)9-6-15)22(33)27-18(12-23)21(32)25-13-19(30)24-11-3-4-20(31)34-2/h5-6,8-9,17-18,29H,3-4,7,10-13,23H2,1-2H3,(H,24,30)(H,25,32)(H,26,28)(H,27,33)/t17-,18-/m0/s1"
PRD_002390 InChIKey InChI 1.06 RHEYQTLFHHFTMS-ROUUACIJSA-N
PRD_002390 SMILES_CANONICAL CACTVS 3.385 "COC(=O)CCCNC(=O)CNC(=O)[C@H](CN)NC(=O)[C@H](CCc1ccc(O)cc1)NC(C)=O"
PRD_002390 SMILES CACTVS 3.385 "COC(=O)CCCNC(=O)CNC(=O)[CH](CN)NC(=O)[CH](CCc1ccc(O)cc1)NC(C)=O"
PRD_002390 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@@H](CCc1ccc(cc1)O)C(=O)N[C@@H](CN)C(=O)NCC(=O)NCCCC(=O)OC"
PRD_002390 SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NC(CCc1ccc(cc1)O)C(=O)NC(CN)C(=O)NCC(=O)NCCCC(=O)OC"
#
_pdbx_chem_comp_identifier.comp_id PRD_002390
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "methyl 4-[2-[[(2~{S})-2-[[(2~{S})-2-acetamido-4-(4-hydroxyphenyl)butanoyl]amino]-3-azanyl-propanoyl]amino]ethanoylamino]butanoate"
#