data_PRDCC_002404 # _chem_comp.id PRD_002404 _chem_comp.name "Dynobactin A" _chem_comp.formula "C60 H78 N18 O16" _chem_comp.formula_weight 1307.372 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.pdbx_ordinal PRD_002404 N1 N1 N 0 1 N N N -3.733 16.832 32.289 12.135 1.812 2.424 TRP 1 N polymer 1 1 Y Y N 1 PRD_002404 C1 C1 C 0 1 N N S -4.547 15.779 32.902 12.215 0.825 1.339 TRP 1 CA polymer 1 1 Y N N 2 PRD_002404 C2 C2 C 0 1 N N N -3.634 14.631 33.318 11.119 1.090 0.339 TRP 1 C polymer 1 1 Y N Y 3 PRD_002404 O1 O1 O 0 1 N N N -2.662 14.337 32.618 10.482 0.176 -0.142 TRP 1 O polymer 1 1 Y N Y 4 PRD_002404 C3 C3 C 0 1 N N N -5.615 15.300 31.914 12.055 -0.581 1.918 TRP 1 CB polymer 1 1 N N N 5 PRD_002404 C4 C4 C 0 1 Y N N -6.538 14.238 32.443 11.003 -1.331 1.143 TRP 1 CG polymer 1 1 N N N 6 PRD_002404 C5 C5 C 0 1 Y N N -7.806 14.411 32.913 11.205 -2.115 0.072 TRP 1 CD1 polymer 1 1 N N N 7 PRD_002404 C6 C6 C 0 1 Y N N -6.302 12.819 32.439 9.564 -1.345 1.416 TRP 1 CD2 polymer 1 1 N N N 8 PRD_002404 N2 N2 N 0 1 Y N N -8.371 13.191 33.216 10.013 -2.622 -0.367 TRP 1 NE1 polymer 1 1 N N N 9 PRD_002404 C7 C7 C 0 1 Y N N -7.465 12.200 32.941 8.987 -2.157 0.424 TRP 1 CE2 polymer 1 1 N N N 10 PRD_002404 C8 C8 C 0 1 Y N N -5.241 12.013 32.009 8.756 -0.758 2.393 TRP 1 CE3 polymer 1 1 N N N 11 PRD_002404 C9 C9 C 0 1 Y N N -7.570 10.822 33.082 7.606 -2.332 0.405 TRP 1 CZ2 polymer 1 1 N N N 12 PRD_002404 C10 C10 C 0 1 Y N N -5.315 10.657 32.219 7.403 -0.946 2.357 TRP 1 CZ3 polymer 1 1 N N N 13 PRD_002404 C11 C11 C 0 1 Y N N -6.495 10.065 32.687 6.825 -1.718 1.359 TRP 1 CH2 polymer 1 1 N N N 14 PRD_002404 N3 N3 N 0 1 N N N -3.942 13.974 34.440 10.860 2.389 -0.014 ASN 2 N polymer 1 1 Y Y N 15 PRD_002404 C12 C12 C 0 1 N N S -3.111 12.881 34.927 9.783 2.552 -1.019 ASN 2 CA polymer 1 1 Y N N 16 PRD_002404 C13 C13 C 0 1 N N N -3.928 11.720 35.558 8.455 2.570 -0.307 ASN 2 C polymer 1 1 Y N Y 17 PRD_002404 O2 O2 O 0 1 N N N -5.135 11.844 35.767 8.402 2.466 0.900 ASN 2 O polymer 1 1 Y N Y 18 PRD_002404 C14 C14 C 0 1 N N N -2.092 13.442 35.912 9.820 1.383 -2.005 ASN 2 CB polymer 1 1 N N N 19 PRD_002404 C15 C15 C 0 1 N N N -2.746 14.008 37.139 11.216 1.232 -2.553 ASN 2 CG polymer 1 1 N N N 20 PRD_002404 O3 O3 O 0 1 N N N -2.905 13.318 38.161 12.095 1.985 -2.190 ASN 2 OD1 polymer 1 1 N N N 21 PRD_002404 N4 N4 N 0 1 N N N -3.167 15.268 37.057 11.488 0.260 -3.446 ASN 2 ND2 polymer 1 1 N N N 22 PRD_002404 N5 N5 N 0 1 N N N -3.228 10.589 35.809 7.314 2.706 -1.043 SER 3 N polymer 1 1 Y Y N 23 PRD_002404 C16 C16 C 0 1 N N S -3.678 9.338 36.434 6.049 2.718 -0.283 SER 3 CA polymer 1 1 Y N N 24 PRD_002404 C17 C17 C 0 1 N N N -5.110 8.926 36.095 5.366 1.383 -0.437 SER 3 C polymer 1 1 Y N Y 25 PRD_002404 O4 O4 O 0 1 N N N -5.967 8.767 36.977 4.705 1.135 -1.423 SER 3 O polymer 1 1 Y N Y 26 PRD_002404 C18 C18 C 0 1 N N N -3.464 9.369 37.946 5.139 3.822 -0.824 SER 3 CB polymer 1 1 N N N 27 PRD_002404 O5 O5 O 0 1 N N N -3.650 10.643 38.539 5.738 5.096 -0.579 SER 3 OG polymer 1 1 N N N 28 PRD_002404 N6 N6 N 0 1 N N N -5.317 8.652 34.805 5.510 0.455 0.560 ASN 4 N polymer 1 1 Y Y N 29 PRD_002404 C19 C19 C 0 1 N N S -6.604 8.251 34.268 4.760 -0.807 0.349 ASN 4 CA polymer 1 1 Y N N 30 PRD_002404 C20 C20 C 0 1 N N N -6.967 6.797 34.554 3.299 -0.586 0.644 ASN 4 C polymer 1 1 Y N Y 31 PRD_002404 O6 O6 O 0 1 N N N -8.152 6.462 34.487 2.954 0.356 1.325 ASN 4 O polymer 1 1 Y N Y 32 PRD_002404 C21 C21 C 0 1 N N N -6.679 8.532 32.767 5.326 -1.865 1.302 ASN 4 CB polymer 1 1 N N N 33 PRD_002404 C22 C22 C 0 1 N N N -5.668 7.773 31.956 4.746 -1.665 2.679 ASN 4 CG polymer 1 1 N N N 34 PRD_002404 O7 O7 O 0 1 N N N -4.542 7.576 32.399 3.950 -0.773 2.878 ASN 4 OD1 polymer 1 1 N N N 35 PRD_002404 N7 N7 N 0 1 N N N -6.013 7.375 30.734 5.114 -2.478 3.689 ASN 4 ND2 polymer 1 1 N N N 36 PRD_002404 N8 N8 N 0 1 N N N -5.991 5.941 34.898 2.375 -1.436 0.152 VAL 5 N polymer 1 1 Y Y N 37 PRD_002404 C23 C23 C 0 1 N N S -6.288 4.555 35.222 0.955 -1.220 0.440 VAL 5 CA polymer 1 1 Y N N 38 PRD_002404 C24 C24 C 0 1 N N N -6.645 4.490 36.691 0.219 -2.532 0.343 VAL 5 C polymer 1 1 Y N Y 39 PRD_002404 O8 O8 O 0 1 N N N -7.682 3.916 37.035 0.644 -3.415 -0.371 VAL 5 O polymer 1 1 Y N Y 40 PRD_002404 C25 C25 C 0 1 N N N -5.139 3.609 34.861 0.373 -0.233 -0.574 VAL 5 CB polymer 1 1 N N N 41 PRD_002404 C26 C26 C 0 1 N N N -5.471 2.175 35.290 0.993 1.148 -0.354 VAL 5 CG1 polymer 1 1 N N N 42 PRD_002404 C27 C27 C 0 1 N N N -4.835 3.680 33.365 0.688 -0.713 -1.992 VAL 5 CG2 polymer 1 1 N N N 43 PRD_002404 N9 N9 N 0 1 N N N -5.824 5.090 37.561 -0.913 -2.723 1.050 HIS 6 N polymer 1 1 Y Y N 44 PRD_002404 C28 C28 C 0 1 N N S -6.149 5.146 38.985 -1.658 -3.973 0.912 HIS 6 CA polymer 1 1 Y N N 45 PRD_002404 C29 C29 C 0 1 N N N -5.432 6.286 39.731 -2.603 -3.904 -0.268 HIS 6 C polymer 1 1 Y N Y 46 PRD_002404 O9 O9 O 0 1 N N N -4.200 6.333 39.767 -3.459 -4.764 -0.357 HIS 6 O polymer 1 1 Y N Y 47 PRD_002404 C30 C30 C 0 1 N N N -5.893 3.802 39.696 -2.462 -4.224 2.195 HIS 6 CB polymer 1 1 N N N 48 PRD_002404 C31 C31 C 0 1 Y N N -6.028 3.882 41.190 -3.681 -3.339 2.179 HIS 6 CG polymer 1 1 N N N 49 PRD_002404 N10 N10 N 1 1 Y N N -7.250 3.694 41.818 -3.825 -2.164 2.808 HIS 6 ND1 polymer 1 1 N N N 50 PRD_002404 C32 C32 C 0 1 Y N N -5.095 4.174 42.132 -4.846 -3.624 1.568 HIS 6 CD2 polymer 1 1 N N N 51 PRD_002404 C33 C33 C 0 1 Y N N -7.027 3.879 43.114 -5.000 -1.668 2.527 HIS 6 CE1 polymer 1 1 N N N 52 PRD_002404 N11 N11 N 0 1 Y N N -5.743 4.171 43.353 -5.625 -2.505 1.671 HIS 6 NE2 polymer 1 1 N N N 53 PRD_002404 N12 N12 N 0 1 N N N -6.220 7.139 40.399 -2.463 -2.891 -1.171 SER 7 N polymer 1 1 Y Y N 54 PRD_002404 C34 C34 C 0 1 N N S -5.734 8.199 41.271 -3.306 -2.875 -2.385 SER 7 CA polymer 1 1 Y N N 55 PRD_002404 C35 C35 C 0 1 N N N -6.171 7.725 42.668 -4.659 -2.284 -2.091 SER 7 C polymer 1 1 Y N Y 56 PRD_002404 O10 O10 O 0 1 N N N -7.283 8.024 43.092 -5.160 -1.527 -2.904 SER 7 O polymer 1 1 Y N Y 57 PRD_002404 C36 C36 C 0 1 N N N -6.381 9.534 40.899 -3.434 -4.242 -3.045 SER 7 CB polymer 1 1 N N N 58 PRD_002404 O11 O11 O 0 1 N N N -6.135 10.535 41.878 -2.156 -4.659 -3.530 SER 7 OG polymer 1 1 N N N 59 PRD_002404 N13 N13 N 0 1 N N N -5.345 6.917 43.340 -5.316 -2.630 -0.950 TYR 8 N polymer 1 1 Y Y N 60 PRD_002404 C37 C37 C 0 1 N N S -5.726 6.297 44.615 -6.456 -1.804 -0.509 TYR 8 CA polymer 1 1 Y N N 61 PRD_002404 C38 C38 C 0 1 N N N -5.047 6.907 45.836 -6.069 -0.345 -0.471 TYR 8 C polymer 1 1 Y N Y 62 PRD_002404 O12 O12 O 0 1 N N N -3.847 6.754 45.999 -4.900 -0.030 -0.421 TYR 8 O polymer 1 1 Y N Y 63 PRD_002404 C39 C39 C 0 1 N N N -5.440 4.786 44.553 -6.849 -2.232 0.914 TYR 8 CB polymer 1 1 N N N 64 PRD_002404 C40 C40 C 0 1 Y N N -5.750 4.037 45.831 -7.712 -3.462 0.854 TYR 8 CG polymer 1 1 N N N 65 PRD_002404 C41 C41 C 0 1 Y N N -6.923 4.275 46.535 -8.851 -3.545 1.633 TYR 8 CD1 polymer 1 1 N N N 66 PRD_002404 C42 C42 C 0 1 Y N N -4.935 3.005 46.268 -7.368 -4.505 0.014 TYR 8 CD2 polymer 1 1 N N N 67 PRD_002404 C43 C43 C 0 1 Y N N -7.212 3.592 47.710 -9.645 -4.674 1.579 TYR 8 CE1 polymer 1 1 N N N 68 PRD_002404 C44 C44 C 0 1 Y N N -5.239 2.280 47.415 -8.159 -5.636 -0.043 TYR 8 CE2 polymer 1 1 N N N 69 PRD_002404 C45 C45 C 0 1 Y N N -6.384 2.573 48.133 -9.299 -5.725 0.742 TYR 8 CZ polymer 1 1 N N N 70 PRD_002404 O13 O13 O 0 1 N N N -6.699 1.885 49.284 -10.079 -6.836 0.688 TYR 8 OH polymer 1 1 N N N 71 PRD_002404 N14 N14 N 0 1 N N N -5.828 7.467 46.753 -7.024 0.606 -0.494 ARG 9 N polymer 1 1 Y Y N 72 PRD_002404 C46 C46 C 0 1 N N S -5.299 8.077 47.973 -6.648 2.021 -0.458 ARG 9 CA polymer 1 1 Y N N 73 PRD_002404 C47 C47 C 0 1 N N N -5.669 7.207 49.190 -7.787 2.829 0.111 ARG 9 C polymer 1 1 Y N Y 74 PRD_002404 O14 O14 O 0 1 N N N -6.777 6.681 49.254 -8.811 2.276 0.453 ARG 9 O polymer 1 1 Y N Y 75 PRD_002404 C48 C48 C 0 1 N N N -5.746 9.556 48.127 -6.340 2.504 -1.877 ARG 9 CB polymer 1 1 N N N 76 PRD_002404 C49 C49 C 0 1 N N N -7.244 9.845 47.945 -5.107 1.771 -2.408 ARG 9 CG polymer 1 1 N N N 77 PRD_002404 C50 C50 C 0 1 N N N -7.700 10.042 46.489 -4.798 2.253 -3.827 ARG 9 CD polymer 1 1 N N N 78 PRD_002404 N15 N15 N 0 1 N N N -8.949 10.807 46.393 -3.617 1.552 -4.335 ARG 9 NE polymer 1 1 N N N 79 PRD_002404 C51 C51 C 0 1 N N N -9.718 10.892 45.304 -3.150 1.821 -5.593 ARG 9 CZ polymer 1 1 N N N 80 PRD_002404 N16 N16 N 0 1 N N N -10.831 11.621 45.324 -3.770 2.721 -6.354 ARG 9 NH1 polymer 1 1 N N N 81 PRD_002404 N17 N17 N 1 1 N N N -9.384 10.244 44.188 -2.076 1.183 -6.055 ARG 9 NH2 polymer 1 1 N N N 82 PRD_002404 N18 N18 N 0 1 N N N -4.729 7.027 50.125 -7.667 4.165 0.240 PHE 10 N polymer 1 1 Y Y N 83 PRD_002404 C52 C52 C 0 1 N N S -4.939 6.170 51.298 -8.773 4.950 0.794 PHE 10 CA polymer 1 1 Y N N 84 PRD_002404 C53 C53 C 0 1 N N N -4.304 6.733 52.596 -9.747 5.289 -0.305 PHE 10 C polymer 1 1 Y N Y 85 PRD_002404 O15 O15 O 0 1 N N N -3.646 7.799 52.539 -9.538 4.913 -1.435 PHE 10 O polymer 1 1 Y N Y 86 PRD_002404 C54 C54 C 0 1 N N N -4.423 4.744 50.999 -8.226 6.240 1.407 PHE 10 CB polymer 1 1 N N N 87 PRD_002404 C55 C55 C 0 1 Y N N -3.082 4.675 50.310 -7.348 5.905 2.584 PHE 10 CG polymer 1 1 N N N 88 PRD_002404 C56 C56 C 0 1 Y N N -1.907 4.663 51.041 -5.995 5.692 2.399 PHE 10 CD1 polymer 1 1 N N N 89 PRD_002404 C57 C57 C 0 1 Y N N -2.996 4.630 48.929 -7.895 5.814 3.851 PHE 10 CD2 polymer 1 1 N N N 90 PRD_002404 C58 C58 C 0 1 Y N N -0.674 4.596 50.402 -5.189 5.384 3.479 PHE 10 CE1 polymer 1 1 N N N 91 PRD_002404 C59 C59 C 0 1 Y N N -1.763 4.526 48.298 -7.089 5.506 4.931 PHE 10 CE2 polymer 1 1 N N N 92 PRD_002404 C60 C60 C 0 1 Y N N -0.612 4.540 49.036 -5.737 5.289 4.745 PHE 10 CZ polymer 1 1 N N N 93 PRD_002404 O16 O16 O 0 1 N Y N -4.481 6.114 53.677 -10.846 6.008 -0.030 PHE 10 OXT polymer 1 1 Y N Y 94 PRD_002404 H1 H1 H 0 1 N N N -4.322 17.591 32.012 12.241 2.750 2.068 TRP 1 H polymer 1 1 Y Y N 95 PRD_002404 H2 H2 H 0 1 N Y N -3.058 17.159 32.950 11.271 1.716 2.937 TRP 1 H2 polymer 1 1 Y Y N 96 PRD_002404 H3 H3 H 0 1 N N N -5.048 16.175 33.798 13.183 0.906 0.845 TRP 1 HA polymer 1 1 Y N N 97 PRD_002404 H4 H4 H 0 1 N N N -6.225 16.168 31.623 13.005 -1.112 1.848 TRP 1 HB2 polymer 1 1 N N N 98 PRD_002404 H5 H5 H 0 1 N N N -5.104 14.897 31.027 11.755 -0.512 2.963 TRP 1 HB3 polymer 1 1 N N N 99 PRD_002404 H6 H6 H 0 1 N N N -8.297 15.366 33.031 12.167 -2.316 -0.377 TRP 1 HD1 polymer 1 1 N N N 100 PRD_002404 H7 H7 H 0 1 N N N -9.293 13.051 33.578 9.906 -3.220 -1.124 TRP 1 HE1 polymer 1 1 N N N 101 PRD_002404 H8 H8 H 0 1 N N N -4.381 12.449 31.522 9.199 -0.157 3.174 TRP 1 HE3 polymer 1 1 N N N 102 PRD_002404 H9 H9 H 0 1 N N N -8.461 10.365 33.486 7.149 -2.947 -0.356 TRP 1 HZ2 polymer 1 1 N N N 103 PRD_002404 H10 H10 H 0 1 N N N -4.452 10.039 32.021 6.779 -0.491 3.112 TRP 1 HZ3 polymer 1 1 N N N 104 PRD_002404 H11 H11 H 0 1 N N N -4.758 14.237 34.955 11.343 3.141 0.364 ASN 2 H polymer 1 1 Y Y N 105 PRD_002404 H12 H12 H 0 1 N N N -2.554 12.462 34.076 9.923 3.490 -1.556 ASN 2 HA polymer 1 1 Y N N 106 PRD_002404 H13 H13 H 0 1 N N N -1.409 12.634 36.214 9.530 0.466 -1.493 ASN 2 HB2 polymer 1 1 N N N 107 PRD_002404 H14 H14 H 0 1 N N N -1.520 14.239 35.415 9.128 1.577 -2.825 ASN 2 HB3 polymer 1 1 N N N 108 PRD_002404 H15 H15 H 0 0 N N N -3.630 15.692 37.835 10.786 -0.343 -3.736 ASN 2 HD21 polymer 1 1 N N N 109 PRD_002404 H16 H16 H 0 0 N N N -3.020 15.791 36.217 12.387 0.162 -3.798 ASN 2 HD22 polymer 1 1 N N N 110 PRD_002404 H17 H17 H 0 1 N N N -2.268 10.608 35.529 7.334 2.789 -2.009 SER 3 H polymer 1 1 Y Y N 111 PRD_002404 H18 H18 H 0 1 N N N -3.029 8.538 36.049 6.258 2.901 0.771 SER 3 HA polymer 1 1 Y N N 112 PRD_002404 H19 H19 H 0 1 N N N -4.174 8.668 38.408 5.000 3.687 -1.897 SER 3 HB2 polymer 1 1 N N N 113 PRD_002404 H20 H20 H 0 1 N N N -2.435 9.040 38.154 4.171 3.774 -0.324 SER 3 HB3 polymer 1 1 N N N 114 PRD_002404 H21 H21 H 0 1 N N N -3.181 11.298 38.036 5.214 5.845 -0.896 SER 3 HG polymer 1 1 N N N 115 PRD_002404 H22 H22 H 0 1 N N N -4.544 8.727 34.175 6.060 0.611 1.344 ASN 4 H polymer 1 1 Y Y N 116 PRD_002404 H23 H23 H 0 1 N N N -7.375 8.872 34.747 4.880 -1.139 -0.683 ASN 4 HA polymer 1 1 Y N N 117 PRD_002404 H24 H24 H 0 1 N N N -7.689 8.282 32.410 5.070 -2.860 0.937 ASN 4 HB2 polymer 1 1 N N N 118 PRD_002404 H25 H25 H 0 0 N N N -5.348 6.904 30.155 5.751 -3.192 3.530 ASN 4 HD21 polymer 1 1 N N N 119 PRD_002404 H26 H26 H 0 0 N N N -6.938 7.547 30.395 4.741 -2.350 4.575 ASN 4 HD22 polymer 1 1 N N N 120 PRD_002404 H27 H27 H 0 1 N N N -5.045 6.262 34.932 2.651 -2.189 -0.392 VAL 5 H polymer 1 1 Y Y N 121 PRD_002404 H28 H28 H 0 1 N N N -7.171 4.241 34.646 0.845 -0.815 1.446 VAL 5 HA polymer 1 1 Y N N 122 PRD_002404 H29 H29 H 0 1 N N N -4.242 3.932 35.410 -0.707 -0.171 -0.442 VAL 5 HB polymer 1 1 N N N 123 PRD_002404 H30 H30 H 0 0 N N N -4.637 1.510 35.024 2.059 1.109 -0.579 VAL 5 HG11 polymer 1 1 N N N 124 PRD_002404 H31 H31 H 0 0 N N N -5.631 2.146 36.378 0.510 1.872 -1.010 VAL 5 HG12 polymer 1 1 N N N 125 PRD_002404 H32 H32 H 0 0 N N N -6.385 1.841 34.776 0.853 1.448 0.685 VAL 5 HG13 polymer 1 1 N N N 126 PRD_002404 H33 H33 H 0 0 N N N -4.008 2.995 33.125 0.114 -1.614 -2.206 VAL 5 HG21 polymer 1 1 N N N 127 PRD_002404 H34 H34 H 0 0 N N N -5.730 3.389 32.795 0.422 0.066 -2.707 VAL 5 HG22 polymer 1 1 N N N 128 PRD_002404 H35 H35 H 0 0 N N N -4.548 4.708 33.098 1.753 -0.933 -2.073 VAL 5 HG23 polymer 1 1 N N N 129 PRD_002404 H36 H36 H 0 1 N N N -4.976 5.506 37.232 -1.233 -2.031 1.649 HIS 6 H polymer 1 1 Y Y N 130 PRD_002404 H37 H37 H 0 1 N N N -7.228 5.345 39.070 -0.961 -4.798 0.760 HIS 6 HA polymer 1 1 Y N N 131 PRD_002404 H38 H38 H 0 1 N N N -6.617 3.065 39.319 -2.764 -5.269 2.234 HIS 6 HB2 polymer 1 1 N N N 132 PRD_002404 H39 H39 H 0 1 N N N -4.873 3.469 39.455 -1.845 -3.985 3.059 HIS 6 HB3 polymer 1 1 N N N 133 PRD_002404 H40 H40 H 0 1 N N N -8.121 3.466 41.384 -3.164 -1.747 3.383 HIS 6 HD1 polymer 1 1 N N N 134 PRD_002404 H41 H41 H 0 1 N N N -4.047 4.371 41.960 -5.109 -4.562 1.101 HIS 6 HD2 polymer 1 1 N N N 135 PRD_002404 H42 H42 H 0 1 N N N -7.786 3.803 43.879 -5.403 -0.745 2.916 HIS 6 HE1 polymer 1 1 N N N 136 PRD_002404 H43 H43 H 0 1 N N N -7.209 7.041 40.291 -1.805 -2.165 -1.036 SER 7 H polymer 1 1 Y Y N 137 PRD_002404 H44 H44 H 0 1 N N N -4.638 8.282 41.226 -2.815 -2.202 -3.120 SER 7 HA polymer 1 1 Y N N 138 PRD_002404 H45 H45 H 0 1 N N N -5.971 9.871 39.935 -3.799 -4.965 -2.316 SER 7 HB2 polymer 1 1 N N N 139 PRD_002404 H46 H46 H 0 1 N N N -7.467 9.388 40.805 -4.135 -4.180 -3.877 SER 7 HB3 polymer 1 1 N N N 140 PRD_002404 H47 H47 H 0 1 N N N -6.551 11.347 41.613 -2.162 -5.523 -3.963 SER 7 HG polymer 1 1 N N N 141 PRD_002404 H48 H48 H 0 1 N N N -4.438 6.729 42.962 -5.050 -3.432 -0.464 TYR 8 H polymer 1 1 Y Y N 142 PRD_002404 H49 H49 H 0 1 N N N -6.811 6.419 44.745 -7.304 -1.942 -1.176 TYR 8 HA polymer 1 1 Y N N 143 PRD_002404 H50 H50 H 0 1 N N N -4.340 4.776 44.556 -7.399 -1.420 1.390 TYR 8 HB3 polymer 1 1 N N N 144 PRD_002404 H51 H51 H 0 1 N N N -7.625 5.006 46.162 -9.120 -2.727 2.285 TYR 8 HD1 polymer 1 1 N N N 145 PRD_002404 H52 H52 H 0 1 N N N -4.046 2.759 45.707 -6.480 -4.436 -0.597 TYR 8 HD2 polymer 1 1 N N N 146 PRD_002404 H53 H53 H 0 1 N N N -8.083 3.858 48.291 -10.535 -4.738 2.188 TYR 8 HE1 polymer 1 1 N N N 147 PRD_002404 H54 H54 H 0 1 N N N -4.582 1.489 47.745 -7.891 -6.451 -0.700 TYR 8 HE2 polymer 1 1 N N N 148 PRD_002404 H55 H55 H 0 1 N N N -6.041 1.219 49.445 -10.777 -6.795 0.020 TYR 8 HH polymer 1 1 N N N 149 PRD_002404 H56 H56 H 0 1 N N N -6.817 7.472 46.604 -7.960 0.353 -0.534 ARG 9 H polymer 1 1 Y Y N 150 PRD_002404 H57 H57 H 0 1 N N N -4.201 8.081 47.902 -5.765 2.147 0.169 ARG 9 HA polymer 1 1 Y N N 151 PRD_002404 H58 H58 H 0 1 N N N -5.463 9.887 49.137 -7.193 2.297 -2.524 ARG 9 HB2 polymer 1 1 N N N 152 PRD_002404 H59 H59 H 0 1 N N N -5.199 10.149 47.380 -6.148 3.576 -1.862 ARG 9 HB3 polymer 1 1 N N N 153 PRD_002404 H60 H60 H 0 1 N N N -7.808 9.000 48.367 -4.254 1.978 -1.760 ARG 9 HG2 polymer 1 1 N N N 154 PRD_002404 H61 H61 H 0 1 N N N -7.484 10.761 48.504 -5.299 0.698 -2.422 ARG 9 HG3 polymer 1 1 N N N 155 PRD_002404 H62 H62 H 0 1 N N N -6.913 10.581 45.942 -5.651 2.046 -4.474 ARG 9 HD2 polymer 1 1 N N N 156 PRD_002404 H63 H63 H 0 1 N N N -7.855 9.054 46.030 -4.606 3.326 -3.812 ARG 9 HD3 polymer 1 1 N N N 157 PRD_002404 H64 H64 H 0 1 N N N -9.248 11.304 47.208 -3.166 0.896 -3.780 ARG 9 HE polymer 1 1 N N N 158 PRD_002404 H65 H65 H 0 0 N N N -11.406 11.678 44.508 -4.552 3.185 -6.018 ARG 9 HH11 polymer 1 1 N N N 159 PRD_002404 H66 H66 H 0 0 N N N -11.092 12.112 46.155 -3.439 2.912 -7.246 ARG 9 HH12 polymer 1 1 N N N 160 PRD_002404 H67 H67 H 0 0 N N N -9.967 10.309 43.378 -1.745 1.374 -6.946 ARG 9 HH21 polymer 1 1 N N N 161 PRD_002404 H68 H68 H 0 0 N N N -8.550 9.693 44.160 -1.625 0.528 -5.500 ARG 9 HH22 polymer 1 1 N N N 162 PRD_002404 H69 H69 H 0 1 N N N -3.851 7.494 50.021 -6.847 4.607 -0.033 PHE 10 H polymer 1 1 Y Y N 163 PRD_002404 H70 H70 H 0 1 N N N -6.022 6.093 51.475 -9.281 4.369 1.563 PHE 10 HA polymer 1 1 Y N N 164 PRD_002404 H71 H71 H 0 1 N N N -4.343 4.204 51.954 -7.642 6.779 0.660 PHE 10 HB2 polymer 1 1 N N N 165 PRD_002404 H72 H72 H 0 1 N N N -5.162 4.243 50.356 -9.056 6.865 1.738 PHE 10 HB3 polymer 1 1 N N N 166 PRD_002404 H73 H73 H 0 1 N N N -1.948 4.706 52.119 -5.567 5.767 1.410 PHE 10 HD1 polymer 1 1 N N N 167 PRD_002404 H74 H74 H 0 1 N N N -3.897 4.676 48.336 -8.951 5.985 3.996 PHE 10 HD2 polymer 1 1 N N N 168 PRD_002404 H75 H75 H 0 1 N N N 0.236 4.588 50.984 -4.132 5.218 3.334 PHE 10 HE1 polymer 1 1 N N N 169 PRD_002404 H76 H76 H 0 1 N N N -1.713 4.434 47.223 -7.516 5.436 5.920 PHE 10 HE2 polymer 1 1 N N N 170 PRD_002404 H77 H77 H 0 1 N N N 0.347 4.507 48.540 -5.107 5.048 5.589 PHE 10 HZ polymer 1 1 N N N 171 PRD_002404 H78 H78 H 0 1 N Y N -4.050 6.580 54.384 -11.441 6.200 -0.767 PHE 10 HXT polymer 1 1 Y N Y 172 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_002404 N1 C1 SING N N 1 PRD_002404 N1 H1 SING N N 2 PRD_002404 N1 H2 SING N N 3 PRD_002404 C1 C2 SING N N 4 PRD_002404 C1 C3 SING N N 5 PRD_002404 C1 H3 SING N N 6 PRD_002404 C2 O1 DOUB N N 7 PRD_002404 C3 C4 SING N N 8 PRD_002404 C3 H4 SING N N 9 PRD_002404 C3 H5 SING N N 10 PRD_002404 C4 C5 DOUB Y N 11 PRD_002404 C4 C6 SING Y N 12 PRD_002404 C5 N2 SING Y N 13 PRD_002404 C5 H6 SING N N 14 PRD_002404 C6 C7 DOUB Y N 15 PRD_002404 C6 C8 SING Y N 16 PRD_002404 N2 C7 SING Y N 17 PRD_002404 N2 H7 SING N N 18 PRD_002404 C7 C9 SING Y N 19 PRD_002404 C8 C10 DOUB Y N 20 PRD_002404 C8 H8 SING N N 21 PRD_002404 C9 C11 DOUB Y N 22 PRD_002404 C9 H9 SING N N 23 PRD_002404 C10 C11 SING Y N 24 PRD_002404 C10 H10 SING N N 25 PRD_002404 N3 C12 SING N N 26 PRD_002404 N3 H11 SING N N 27 PRD_002404 C12 C13 SING N N 28 PRD_002404 C12 C14 SING N N 29 PRD_002404 C12 H12 SING N N 30 PRD_002404 C13 O2 DOUB N N 31 PRD_002404 C14 C15 SING N N 32 PRD_002404 C14 H13 SING N N 33 PRD_002404 C14 H14 SING N N 34 PRD_002404 C15 O3 DOUB N N 35 PRD_002404 C15 N4 SING N N 36 PRD_002404 N4 H15 SING N N 37 PRD_002404 N4 H16 SING N N 38 PRD_002404 N5 C16 SING N N 39 PRD_002404 N5 H17 SING N N 40 PRD_002404 C16 C17 SING N N 41 PRD_002404 C16 C18 SING N N 42 PRD_002404 C16 H18 SING N N 43 PRD_002404 C17 O4 DOUB N N 44 PRD_002404 C18 O5 SING N N 45 PRD_002404 C18 H19 SING N N 46 PRD_002404 C18 H20 SING N N 47 PRD_002404 O5 H21 SING N N 48 PRD_002404 N6 C19 SING N N 49 PRD_002404 N6 H22 SING N N 50 PRD_002404 C19 C20 SING N N 51 PRD_002404 C19 C21 SING N N 52 PRD_002404 C19 H23 SING N N 53 PRD_002404 C20 O6 DOUB N N 54 PRD_002404 C21 C22 SING N N 55 PRD_002404 C21 H24 SING N N 56 PRD_002404 C22 O7 DOUB N N 57 PRD_002404 C22 N7 SING N N 58 PRD_002404 N7 H25 SING N N 59 PRD_002404 N7 H26 SING N N 60 PRD_002404 N8 C23 SING N N 61 PRD_002404 N8 H27 SING N N 62 PRD_002404 C23 C24 SING N N 63 PRD_002404 C23 C25 SING N N 64 PRD_002404 C23 H28 SING N N 65 PRD_002404 C24 O8 DOUB N N 66 PRD_002404 C25 C26 SING N N 67 PRD_002404 C25 C27 SING N N 68 PRD_002404 C25 H29 SING N N 69 PRD_002404 C26 H30 SING N N 70 PRD_002404 C26 H31 SING N N 71 PRD_002404 C26 H32 SING N N 72 PRD_002404 C27 H33 SING N N 73 PRD_002404 C27 H34 SING N N 74 PRD_002404 C27 H35 SING N N 75 PRD_002404 N9 C28 SING N N 76 PRD_002404 N9 H36 SING N N 77 PRD_002404 C28 C29 SING N N 78 PRD_002404 C28 C30 SING N N 79 PRD_002404 C28 H37 SING N N 80 PRD_002404 C29 O9 DOUB N N 81 PRD_002404 C30 C31 SING N N 82 PRD_002404 C30 H38 SING N N 83 PRD_002404 C30 H39 SING N N 84 PRD_002404 C31 N10 SING Y N 85 PRD_002404 C31 C32 DOUB Y N 86 PRD_002404 N10 C33 DOUB Y N 87 PRD_002404 N10 H40 SING N N 88 PRD_002404 C32 N11 SING Y N 89 PRD_002404 C32 H41 SING N N 90 PRD_002404 C33 N11 SING Y N 91 PRD_002404 C33 H42 SING N N 92 PRD_002404 N12 C34 SING N N 93 PRD_002404 N12 H43 SING N N 94 PRD_002404 C34 C35 SING N N 95 PRD_002404 C34 C36 SING N N 96 PRD_002404 C34 H44 SING N N 97 PRD_002404 C35 O10 DOUB N N 98 PRD_002404 C36 O11 SING N N 99 PRD_002404 C36 H45 SING N N 100 PRD_002404 C36 H46 SING N N 101 PRD_002404 O11 H47 SING N N 102 PRD_002404 N13 C37 SING N N 103 PRD_002404 N13 H48 SING N N 104 PRD_002404 C37 C38 SING N N 105 PRD_002404 C37 C39 SING N N 106 PRD_002404 C37 H49 SING N N 107 PRD_002404 C38 O12 DOUB N N 108 PRD_002404 C39 C40 SING N N 109 PRD_002404 C39 H50 SING N N 110 PRD_002404 C40 C41 DOUB Y N 111 PRD_002404 C40 C42 SING Y N 112 PRD_002404 C41 C43 SING Y N 113 PRD_002404 C41 H51 SING N N 114 PRD_002404 C42 C44 DOUB Y N 115 PRD_002404 C42 H52 SING N N 116 PRD_002404 C43 C45 DOUB Y N 117 PRD_002404 C43 H53 SING N N 118 PRD_002404 C44 C45 SING Y N 119 PRD_002404 C44 H54 SING N N 120 PRD_002404 C45 O13 SING N N 121 PRD_002404 O13 H55 SING N N 122 PRD_002404 N14 C46 SING N N 123 PRD_002404 N14 H56 SING N N 124 PRD_002404 C46 C47 SING N N 125 PRD_002404 C46 C48 SING N N 126 PRD_002404 C46 H57 SING N N 127 PRD_002404 C47 O14 DOUB N N 128 PRD_002404 C48 C49 SING N N 129 PRD_002404 C48 H58 SING N N 130 PRD_002404 C48 H59 SING N N 131 PRD_002404 C49 C50 SING N N 132 PRD_002404 C49 H60 SING N N 133 PRD_002404 C49 H61 SING N N 134 PRD_002404 C50 N15 SING N N 135 PRD_002404 C50 H62 SING N N 136 PRD_002404 C50 H63 SING N N 137 PRD_002404 N15 C51 SING N N 138 PRD_002404 N15 H64 SING N N 139 PRD_002404 C51 N16 SING N N 140 PRD_002404 C51 N17 DOUB N N 141 PRD_002404 N16 H65 SING N N 142 PRD_002404 N16 H66 SING N N 143 PRD_002404 N17 H67 SING N N 144 PRD_002404 N17 H68 SING N N 145 PRD_002404 N18 C52 SING N N 146 PRD_002404 N18 H69 SING N N 147 PRD_002404 C52 C53 SING N N 148 PRD_002404 C52 C54 SING N N 149 PRD_002404 C52 H70 SING N N 150 PRD_002404 C53 O15 DOUB N N 151 PRD_002404 C53 O16 SING N N 152 PRD_002404 C54 C55 SING N N 153 PRD_002404 C54 H71 SING N N 154 PRD_002404 C54 H72 SING N N 155 PRD_002404 C55 C56 DOUB Y N 156 PRD_002404 C55 C57 SING Y N 157 PRD_002404 C56 C58 SING Y N 158 PRD_002404 C56 H73 SING N N 159 PRD_002404 C57 C59 DOUB Y N 160 PRD_002404 C57 H74 SING N N 161 PRD_002404 C58 C60 DOUB Y N 162 PRD_002404 C58 H75 SING N N 163 PRD_002404 C59 C60 SING Y N 164 PRD_002404 C59 H76 SING N N 165 PRD_002404 C60 H77 SING N N 166 PRD_002404 O16 H78 SING N N 167 PRD_002404 C2 N3 SING N N 168 PRD_002404 C11 C21 SING N N 169 PRD_002404 C13 N5 SING N N 170 PRD_002404 C17 N6 SING N N 171 PRD_002404 C20 N8 SING N N 172 PRD_002404 C24 N9 SING N N 173 PRD_002404 C29 N12 SING N N 174 PRD_002404 N11 C39 SING N N 175 PRD_002404 C35 N13 SING N N 176 PRD_002404 C38 N14 SING N N 177 PRD_002404 C47 N18 SING N N 178 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_002404 InChI InChI 1.06 "InChI=1S/C60H76N18O16/c1-27(2)45(75-57(91)46-44(49(63)83)30-12-15-34-31(22-67-37(34)19-30)18-35(61)50(84)70-39(21-43(62)82)53(87)74-41(24-79)54(88)76-46)56(90)71-38-20-32-23-78(26-68-32)48(29-10-13-33(81)14-11-29)47(77-55(89)42(25-80)73-52(38)86)58(92)69-36(9-6-16-66-60(64)65)51(85)72-40(59(93)94)17-28-7-4-3-5-8-28/h3-5,7-8,10-15,19,22-23,26-27,35-36,38-42,44-48,67,79-81H,6,9,16-18,20-21,24-25,61H2,1-2H3,(H2,62,82)(H2,63,83)(H,69,92)(H,70,84)(H,71,90)(H,72,85)(H,73,86)(H,74,87)(H,75,91)(H,76,88)(H,77,89)(H,93,94)(H4,64,65,66)/p+2/t35-,36-,38-,39-,40-,41-,42-,44+,45-,46-,47-,48+/m0/s1" PRD_002404 InChIKey InChI 1.06 HWDDFJOGMWPPAS-GANBONKGSA-P PRD_002404 SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@H](NC(=O)[C@H]1NC(=O)[C@H](CO)NC(=O)[C@H](CC(N)=O)NC(=O)[C@@H](N)Cc2c[nH]c3cc(ccc23)[C@H]1C(N)=O)C(=O)N[C@H]4Cc5cn(c[nH+]5)[C@@H]([C@H](NC(=O)[C@H](CO)NC4=O)C(=O)N[C@@H](CCCNC(N)=[NH2+])C(=O)N[C@@H](Cc6ccccc6)C(O)=O)c7ccc(O)cc7" PRD_002404 SMILES CACTVS 3.385 "CC(C)[CH](NC(=O)[CH]1NC(=O)[CH](CO)NC(=O)[CH](CC(N)=O)NC(=O)[CH](N)Cc2c[nH]c3cc(ccc23)[CH]1C(N)=O)C(=O)N[CH]4Cc5cn(c[nH+]5)[CH]([CH](NC(=O)[CH](CO)NC4=O)C(=O)N[CH](CCCNC(N)=[NH2+])C(=O)N[CH](Cc6ccccc6)C(O)=O)c7ccc(O)cc7" PRD_002404 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@@H](C(=O)N[C@H]1Cc2cn(c[nH+]2)C([C@H](NC(=O)[C@@H](NC1=O)CO)C(=O)N[C@@H](CCCNC(=[NH2+])N)C(=O)N[C@@H](Cc3ccccc3)C(=O)O)c4ccc(cc4)O)NC(=O)[C@@H]5C(c6ccc7c(c6)[nH]cc7C[C@@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N5)CO)CC(=O)N)N)C(=O)N" PRD_002404 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C(C(=O)NC1Cc2cn(c[nH+]2)C(C(NC(=O)C(NC1=O)CO)C(=O)NC(CCCNC(=[NH2+])N)C(=O)NC(Cc3ccccc3)C(=O)O)c4ccc(cc4)O)NC(=O)C5C(c6ccc7c(c6)[nH]cc7CC(C(=O)NC(C(=O)NC(C(=O)N5)CO)CC(=O)N)N)C(=O)N" # _pdbx_chem_comp_identifier.comp_id PRD_002404 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "[[[(4~{S})-4-[[(3~{S},6~{S},9~{S})-9-[[(2~{S})-2-[[(6~{S},9~{S},12~{S},15~{S})-16-aminocarbonyl-6-azanyl-9-(2-azanyl-2-oxidanylidene-ethyl)-12-(hydroxymethyl)-7,10,13-tris(oxidanylidene)-2,8,11,14-tetrazatricyclo[15.3.1.0^{4,20}]henicosa-1(20),3,17(21),18-tetraen-15-yl]carbonylamino]-3-methyl-butanoyl]amino]-6-(hydroxymethyl)-2-(4-hydroxyphenyl)-5,8-bis(oxidanylidene)-1,4,7-triaza-12-azoniabicyclo[9.2.1]tetradeca-11(14),12-dien-3-yl]carbonylamino]-5-oxidanylidene-5-[[(2~{S})-1-oxidanyl-1-oxidanylidene-3-phenyl-propan-2-yl]amino]pentyl]amino]-azanyl-methylidene]azanium" #