data_PRDCC_002423 # _chem_comp.id PRD_002423 _chem_comp.name "Phytochelatin 2" _chem_comp.formula "C18 H29 N5 O10 S2" _chem_comp.formula_weight 539.580 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.pdbx_ordinal PRD_002423 N1 N1 N 0 1 N N N 116.688 122.461 104.829 4.113 0.794 -0.135 CYS 1 N polymer 1 1 Y Y N 1 PRD_002423 C1 C1 C 0 1 N N R 115.615 121.585 105.258 2.853 0.958 0.596 CYS 1 CA polymer 1 1 Y N N 2 PRD_002423 C2 C2 C 0 1 N N N 114.721 122.491 106.068 1.962 1.918 -0.149 CYS 1 C polymer 1 1 Y N Y 3 PRD_002423 O1 O1 O 0 1 N N N 113.745 123.050 105.578 2.341 2.415 -1.189 CYS 1 O polymer 1 1 Y N Y 4 PRD_002423 C3 C3 C 0 1 N N N 116.231 120.498 106.135 3.143 1.511 1.993 CYS 1 CB polymer 1 1 N N N 5 PRD_002423 S1 S1 S 0 1 N N N 115.224 118.986 106.389 4.216 0.356 2.890 CYS 1 SG polymer 1 1 N N N 6 PRD_002423 N2 N2 N 0 1 N N N 115.103 122.632 107.335 0.743 2.222 0.339 GLU 2 N polymer 1 1 Y Y N 7 PRD_002423 C4 C4 C 0 1 N N S 114.414 123.529 108.251 -0.124 3.155 -0.386 GLU 2 CA polymer 1 1 Y N N 8 PRD_002423 C5 C5 C 0 1 N N N 114.730 124.930 107.781 0.226 4.569 0.001 GLU 2 C polymer 1 1 Y N Y 9 PRD_002423 O2 O2 O 0 1 N N N 113.911 125.822 108.059 1.108 4.777 0.799 GLU 2 O polymer 1 1 Y N Y 10 PRD_002423 C6 C6 C 0 1 N N N 114.972 123.348 109.650 -1.585 2.875 -0.029 GLU 2 CB polymer 1 1 N N N 11 PRD_002423 C7 C7 C 0 1 N N N 114.700 121.916 110.103 -1.976 1.484 -0.533 GLU 2 CG polymer 1 1 N N N 12 PRD_002423 C8 C8 C 0 1 N N N 115.940 121.409 110.823 -3.415 1.209 -0.182 GLU 2 CD polymer 1 1 N N N 13 PRD_002423 O3 O3 O 0 1 N N N 116.065 121.511 112.040 -4.064 2.042 0.413 GLU 2 OE1 polymer 1 1 N N N 14 PRD_002423 O4 O4 O 0 1 N Y N ? ? ? -0.444 5.598 -0.543 GLU 2 OXT polymer 1 1 Y N Y 15 PRD_002423 N3 N3 N 0 1 N N N 116.843 120.844 110.027 -3.981 0.036 -0.529 CYS 1 N polymer 2 2 Y Y N 16 PRD_002423 C9 C9 C 0 1 N N R 118.106 120.340 110.548 -5.380 -0.233 -0.187 CYS 1 CA polymer 2 2 Y N N 17 PRD_002423 C10 C10 C 0 1 N N N 118.863 121.535 111.135 -5.600 -1.721 -0.103 CYS 1 C polymer 2 2 Y N Y 18 PRD_002423 O5 O5 O 0 1 N N N 119.568 122.242 110.422 -4.679 -2.483 -0.308 CYS 1 O polymer 2 2 Y N Y 19 PRD_002423 C11 C11 C 0 1 N N N 118.874 119.706 109.395 -6.290 0.358 -1.266 CYS 1 CB polymer 2 2 N N N 20 PRD_002423 S2 S2 S 0 1 N N N 117.904 118.439 108.496 -6.025 2.149 -1.367 CYS 1 SG polymer 2 2 N N N 21 PRD_002423 N4 N4 N 0 1 N N N 118.656 121.763 112.441 -6.821 -2.205 0.200 GLY 2 N polymer 2 2 Y Y N 22 PRD_002423 C12 C12 C 0 1 N N N 119.283 122.886 113.165 -7.035 -3.652 0.282 GLY 2 CA polymer 2 2 Y N N 23 PRD_002423 C13 C13 C 0 1 N N N 118.905 122.828 114.643 -8.474 -3.928 0.633 GLY 2 C polymer 2 2 Y N Y 24 PRD_002423 O6 O6 O 0 1 N N N 119.728 123.299 115.456 -9.242 -3.010 0.799 GLY 2 O polymer 2 2 Y N Y 25 PRD_002423 O7 O7 O 0 1 N Y N 117.802 122.317 114.928 -8.903 -5.194 0.763 GLY 2 OXT polymer 2 2 Y N Y 26 PRD_002423 N5 N5 N 0 1 N N N 115.958 123.177 100.068 9.035 -1.031 -0.687 DGL 3 N non-polymer 3 3 Y Y N 27 PRD_002423 C14 C14 C 0 1 N N R 116.553 123.928 101.170 8.064 -2.030 -1.154 DGL 3 CA non-polymer 3 3 Y N N 28 PRD_002423 C15 C15 C 0 1 N N N 117.413 125.059 100.620 8.610 -3.413 -0.909 DGL 3 C non-polymer 3 3 Y N Y 29 PRD_002423 O8 O8 O 0 1 N N N 117.162 125.466 99.476 9.491 -3.581 -0.100 DGL 3 O non-polymer 3 3 Y N Y 30 PRD_002423 C16 C16 C 0 1 N N N 115.456 124.519 102.033 6.749 -1.858 -0.391 DGL 3 CB non-polymer 3 3 N N N 31 PRD_002423 C17 C17 C 0 1 N N N 115.237 123.634 103.251 6.132 -0.502 -0.736 DGL 3 CG non-polymer 3 3 N N N 32 PRD_002423 C18 C18 C 0 1 N N N 116.565 123.486 103.985 4.837 -0.333 0.015 DGL 3 CD non-polymer 3 3 N N N 33 PRD_002423 O9 O9 O 0 1 N N N 117.507 124.223 103.719 4.446 -1.211 0.754 DGL 3 OE1 non-polymer 3 3 N N N 34 PRD_002423 O10 O10 O 0 1 N Y N ? ? ? 8.117 -4.459 -1.591 DGL 3 OXT non-polymer 3 3 Y N Y 35 PRD_002423 H1 H1 H 0 1 N N N 117.600 122.281 105.198 4.424 1.495 -0.729 CYS 1 H polymer 1 1 Y Y N 36 PRD_002423 H2 H2 H 0 1 N N N 115.073 121.146 104.408 2.356 -0.008 0.683 CYS 1 HA polymer 1 1 Y N N 37 PRD_002423 H3 H3 H 0 1 N N N 117.181 120.193 105.672 3.641 2.477 1.906 CYS 1 HB2 polymer 1 1 N N N 38 PRD_002423 H4 H4 H 0 1 N N N 116.429 120.938 107.124 2.206 1.633 2.536 CYS 1 HB3 polymer 1 1 N N N 39 PRD_002423 H5 H5 H 0 1 N N N 115.995 118.273 107.155 4.384 0.961 4.080 CYS 1 HG polymer 1 1 N N N 40 PRD_002423 H6 H6 H 0 1 N N N 115.886 122.106 107.667 0.440 1.824 1.170 GLU 2 H polymer 1 1 Y Y N 41 PRD_002423 H7 H7 H 0 1 N N N 113.328 123.354 108.244 0.019 3.026 -1.459 GLU 2 HA polymer 1 1 Y N N 42 PRD_002423 H8 H8 H 0 1 N N N 116.056 123.535 109.643 -1.709 2.917 1.053 GLU 2 HB2 polymer 1 1 N N N 43 PRD_002423 H9 H9 H 0 1 N N N 114.483 124.053 110.338 -2.223 3.624 -0.498 GLU 2 HB3 polymer 1 1 N N N 44 PRD_002423 H10 H10 H 0 1 N N N 113.838 121.898 110.786 -1.851 1.442 -1.615 GLU 2 HG2 polymer 1 1 N N N 45 PRD_002423 H11 H11 H 0 1 N N N 114.490 121.281 109.229 -1.337 0.735 -0.065 GLU 2 HG3 polymer 1 1 N N N 46 PRD_002423 H12 H12 H 0 1 N Y N ? ? ? -0.184 6.487 -0.264 GLU 2 HXT polymer 1 1 Y N Y 47 PRD_002423 H13 H13 H 0 1 N N N 116.651 120.763 109.049 -3.461 -0.631 -1.005 CYS 1 H polymer 2 2 Y Y N 48 PRD_002423 H14 H14 H 0 1 N N N 117.931 119.591 111.334 -5.613 0.224 0.775 CYS 1 HA polymer 2 2 Y N N 49 PRD_002423 H15 H15 H 0 1 N N N 119.158 120.498 108.686 -6.057 -0.099 -2.228 CYS 1 HB2 polymer 2 2 N N N 50 PRD_002423 H16 H16 H 0 1 N N N 119.781 119.232 109.798 -7.331 0.158 -1.012 CYS 1 HB3 polymer 2 2 N N N 51 PRD_002423 H17 H17 H 0 1 N N N 118.745 118.052 107.583 -6.876 2.527 -2.338 CYS 1 HG polymer 2 2 N N N 52 PRD_002423 H18 H18 H 0 1 N N N 118.051 121.146 112.945 -7.557 -1.596 0.364 GLY 2 H polymer 2 2 Y Y N 53 PRD_002423 H19 H19 H 0 1 N N N 120.376 122.819 113.065 -6.802 -4.109 -0.680 GLY 2 HA2 polymer 2 2 Y N N 54 PRD_002423 H20 H20 H 0 1 N N N 118.933 123.837 112.736 -6.386 -4.073 1.050 GLY 2 HA3 polymer 2 2 Y N N 55 PRD_002423 H21 H21 H 0 1 N Y N 117.676 122.338 115.869 -9.834 -5.320 0.989 GLY 2 HXT polymer 2 2 Y N Y 56 PRD_002423 H22 H22 H 0 1 N N N 115.395 122.436 100.434 9.217 -1.137 0.300 DGL 3 H non-polymer 3 3 Y Y N 57 PRD_002423 H23 H23 H 0 1 N Y N 115.388 123.788 99.518 9.890 -1.081 -1.220 DGL 3 H2 non-polymer 3 3 Y Y N 58 PRD_002423 H24 H24 H 0 1 N N N 117.179 123.264 101.784 7.886 -1.892 -2.220 DGL 3 HA non-polymer 3 3 Y N N 59 PRD_002423 H25 H25 H 0 1 N N N 115.750 125.527 102.360 6.059 -2.654 -0.673 DGL 3 HB2 non-polymer 3 3 N N N 60 PRD_002423 H26 H26 H 0 1 N N N 114.524 124.579 101.451 6.942 -1.907 0.681 DGL 3 HB3 non-polymer 3 3 N N N 61 PRD_002423 H27 H27 H 0 1 N N N 114.494 124.097 103.917 6.822 0.294 -0.454 DGL 3 HG2 non-polymer 3 3 N N N 62 PRD_002423 H28 H28 H 0 1 N N N 114.877 122.645 102.931 5.939 -0.453 -1.808 DGL 3 HG3 non-polymer 3 3 N N N 63 PRD_002423 H29 H29 H 0 1 N Y N ? ? ? 8.499 -5.327 -1.400 DGL 3 HXT non-polymer 3 3 Y N Y 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_002423 N1 C1 SING N N 1 PRD_002423 N1 H1 SING N N 2 PRD_002423 C1 C2 SING N N 3 PRD_002423 C1 C3 SING N N 4 PRD_002423 C1 H2 SING N N 5 PRD_002423 C2 O1 DOUB N N 6 PRD_002423 C3 S1 SING N N 7 PRD_002423 C3 H3 SING N N 8 PRD_002423 C3 H4 SING N N 9 PRD_002423 S1 H5 SING N N 10 PRD_002423 N2 C4 SING N N 11 PRD_002423 N2 H6 SING N N 12 PRD_002423 C4 C5 SING N N 13 PRD_002423 C4 C6 SING N N 14 PRD_002423 C4 H7 SING N N 15 PRD_002423 C5 O2 DOUB N N 16 PRD_002423 C5 O4 SING N N 17 PRD_002423 C6 C7 SING N N 18 PRD_002423 C6 H8 SING N N 19 PRD_002423 C6 H9 SING N N 20 PRD_002423 C7 C8 SING N N 21 PRD_002423 C7 H10 SING N N 22 PRD_002423 C7 H11 SING N N 23 PRD_002423 C8 O3 DOUB N N 24 PRD_002423 O4 H12 SING N N 25 PRD_002423 N3 C9 SING N N 26 PRD_002423 N3 H13 SING N N 27 PRD_002423 C9 C10 SING N N 28 PRD_002423 C9 C11 SING N N 29 PRD_002423 C9 H14 SING N N 30 PRD_002423 C10 O5 DOUB N N 31 PRD_002423 C11 S2 SING N N 32 PRD_002423 C11 H15 SING N N 33 PRD_002423 C11 H16 SING N N 34 PRD_002423 S2 H17 SING N N 35 PRD_002423 N4 C12 SING N N 36 PRD_002423 N4 H18 SING N N 37 PRD_002423 C12 C13 SING N N 38 PRD_002423 C12 H19 SING N N 39 PRD_002423 C12 H20 SING N N 40 PRD_002423 C13 O6 DOUB N N 41 PRD_002423 C13 O7 SING N N 42 PRD_002423 O7 H21 SING N N 43 PRD_002423 N5 C14 SING N N 44 PRD_002423 N5 H22 SING N N 45 PRD_002423 N5 H23 SING N N 46 PRD_002423 C14 C15 SING N N 47 PRD_002423 C14 C16 SING N N 48 PRD_002423 C14 H24 SING N N 49 PRD_002423 C15 O8 DOUB N N 50 PRD_002423 C15 O10 SING N N 51 PRD_002423 C16 C17 SING N N 52 PRD_002423 C16 H25 SING N N 53 PRD_002423 C16 H26 SING N N 54 PRD_002423 C17 C18 SING N N 55 PRD_002423 C17 H27 SING N N 56 PRD_002423 C17 H28 SING N N 57 PRD_002423 C18 O9 DOUB N N 58 PRD_002423 O10 H29 SING N N 59 PRD_002423 C2 N2 SING N N 60 PRD_002423 C10 N4 SING N N 61 PRD_002423 N1 C18 SING N N 62 PRD_002423 C8 N3 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_002423 SMILES_CANONICAL CACTVS 3.385 "N[C@H](CCC(=O)N[C@@H](CS)C(=O)N[C@@H](CCC(=O)N[C@@H](CS)C(=O)NCC(O)=O)C(O)=O)C(O)=O" PRD_002423 SMILES CACTVS 3.385 "N[CH](CCC(=O)N[CH](CS)C(=O)N[CH](CCC(=O)N[CH](CS)C(=O)NCC(O)=O)C(O)=O)C(O)=O" PRD_002423 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(CC(=O)N[C@@H](CS)C(=O)N[C@@H](CCC(=O)N[C@@H](CS)C(=O)NCC(=O)O)C(=O)O)[C@H](C(=O)O)N" PRD_002423 SMILES "OpenEye OEToolkits" 2.0.7 "C(CC(=O)NC(CS)C(=O)NC(CCC(=O)NC(CS)C(=O)NCC(=O)O)C(=O)O)C(C(=O)O)N" # _pdbx_chem_comp_identifier.comp_id PRD_002423 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-2-azanyl-5-[[(2~{R})-1-[[(2~{S})-5-[[(2~{R})-1-(2-hydroxy-2-oxoethylamino)-1-oxidanylidene-3-sulfanyl-propan-2-yl]amino]-1-oxidanyl-1,5-bis(oxidanylidene)pentan-2-yl]amino]-1-oxidanylidene-3-sulfanyl-propan-2-yl]amino]-5-oxidanylidene-pentanoic acid" #