data_PRDCC_002470 # _chem_comp.id PRD_002470 _chem_comp.name "Agrocinopine A (alpha-L-arabinopyranose form)" _chem_comp.formula "C17 H31 O18 P" _chem_comp.formula_weight 554.391 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type saccharide _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_002470 C1 C1 C 0 1 N N S 32.145 26.659 35.749 -4.537 -0.765 0.821 GLC 1 C1 polymer 1 1 1 ? ? ? PRD_002470 C2 C2 C 0 1 N N R 32.583 27.764 36.700 -5.534 -1.732 0.176 GLC 1 C2 polymer 1 1 2 ? ? ? PRD_002470 C3 C3 C 0 1 N N S 33.457 27.307 37.850 -5.422 -1.628 -1.348 GLC 1 C3 polymer 1 1 3 ? ? ? PRD_002470 C4 C4 C 0 1 N N S 33.900 25.926 37.867 -5.665 -0.175 -1.769 GLC 1 C4 polymer 1 1 4 ? ? ? PRD_002470 C5 C5 C 0 1 N N R 32.985 24.870 37.274 -4.663 0.731 -1.049 GLC 1 C5 polymer 1 1 5 ? ? ? PRD_002470 C6 C6 C 0 1 N N N 32.454 23.838 38.159 -4.938 2.191 -1.418 GLC 1 C6 polymer 1 1 6 ? ? ? PRD_002470 O1 O1 O 0 1 N N N 33.076 28.900 36.011 -5.238 -3.068 0.587 GLC 1 O2 polymer 1 1 7 ? ? ? PRD_002470 O2 O2 O 0 1 N N N 34.570 28.210 38.073 -4.115 -2.032 -1.760 GLC 1 O3 polymer 1 1 8 ? ? ? PRD_002470 O3 O3 O 0 1 N N N 34.643 25.579 39.062 -6.996 0.208 -1.415 GLC 1 O4 polymer 1 1 9 ? ? ? PRD_002470 O4 O4 O 0 1 N N N 31.856 25.472 36.459 -4.799 0.563 0.363 GLC 1 O5 polymer 1 1 10 ? ? ? PRD_002470 O5 O5 O 0 1 N N N 31.274 24.089 38.856 -3.933 3.026 -0.840 GLC 1 O6 polymer 1 1 11 ? ? ? PRD_002470 C7 C7 C 0 1 N N N 32.515 27.546 32.683 -2.415 -0.608 2.684 FRU 2 C1 polymer 1 1 12 ? ? ? PRD_002470 C8 C8 C 0 1 N N R 32.733 26.198 33.351 -2.189 -0.445 1.180 FRU 2 C2 polymer 1 1 13 ? ? ? PRD_002470 C9 C9 C 0 1 N N S 33.889 25.481 32.685 -0.803 -0.997 0.795 FRU 2 C3 polymer 1 1 14 ? ? ? PRD_002470 C10 C10 C 0 1 N N S 33.659 24.139 32.996 -0.040 0.236 0.252 FRU 2 C4 polymer 1 1 15 ? ? ? PRD_002470 C11 C11 C 0 1 N N R 32.184 24.023 32.915 -0.837 1.411 0.874 FRU 2 C5 polymer 1 1 16 ? ? ? PRD_002470 C12 C12 C 0 1 N N N 31.678 23.048 33.919 -0.669 2.679 0.036 FRU 2 C6 polymer 1 1 17 ? ? ? PRD_002470 O6 O6 O 0 1 N N N 33.262 28.625 33.168 -3.618 0.066 3.061 FRU 2 O1 polymer 1 1 18 ? ? ? PRD_002470 O7 O7 O 0 1 N Y N 33.124 26.391 34.752 -3.207 -1.140 0.457 FRU 2 O2 polymer 1 1 19 ? ? ? PRD_002470 O8 O8 O 0 1 N N N 35.163 25.926 33.094 -0.927 -1.996 -0.219 FRU 2 O3 polymer 1 1 20 ? ? ? PRD_002470 O9 O9 O 0 1 N N N 34.220 23.309 31.976 1.314 0.239 0.708 FRU 2 O4 polymer 1 1 21 ? ? ? PRD_002470 O10 O10 O 0 1 N N N 31.665 25.303 33.169 -2.205 0.950 0.832 FRU 2 O5 polymer 1 1 22 ? ? ? PRD_002470 O11 O11 O 0 1 N N N 30.291 22.866 33.890 -1.316 3.772 0.691 FRU 2 O6 polymer 1 1 23 ? ? ? PRD_002470 O12 O12 O 0 1 N N N 36.150 22.436 33.443 2.607 1.555 -1.165 LAO 3 OP2 non-polymer 2 2 24 ? ? ? PRD_002470 P1 P1 P 0 1 N N N 35.369 22.188 32.194 2.576 0.203 -0.291 LAO 3 P non-polymer 2 2 25 ? ? ? PRD_002470 O13 O13 O 0 1 N N N 36.278 22.217 30.997 2.458 -0.965 -1.192 LAO 3 OP1 non-polymer 2 2 26 ? ? ? PRD_002470 O14 O14 O 0 1 N N N 34.634 20.785 32.354 3.934 0.086 0.565 LAO 3 O2 non-polymer 2 2 27 ? ? ? PRD_002470 C13 C13 C 0 1 N N R 34.258 19.884 31.277 5.221 -0.073 -0.036 LAO 3 C2 non-polymer 2 2 28 ? ? ? PRD_002470 C14 C14 C 0 1 N N S 32.833 19.639 31.325 5.854 -1.381 0.448 LAO 3 C3 non-polymer 2 2 29 ? ? ? PRD_002470 O15 O15 O 0 1 N N N 32.052 20.862 31.090 5.058 -2.486 0.014 LAO 3 O3 non-polymer 2 2 30 ? ? ? PRD_002470 C15 C15 C 0 1 N N S 32.344 18.584 30.494 7.263 -1.502 -0.141 LAO 3 C4 non-polymer 2 2 31 ? ? ? PRD_002470 O16 O16 O 0 1 N N N 32.519 18.882 29.088 7.181 -1.572 -1.566 LAO 3 O4 non-polymer 2 2 32 ? ? ? PRD_002470 C16 C16 C 0 1 N N N 33.131 17.310 30.740 8.084 -0.275 0.265 LAO 3 C5 non-polymer 2 2 33 ? ? ? PRD_002470 O17 O17 O 0 1 N N N 34.530 17.537 30.605 7.424 0.909 -0.189 LAO 3 O5 non-polymer 2 2 34 ? ? ? PRD_002470 C17 C17 C 0 1 N N R 35.036 18.585 31.424 6.121 1.100 0.364 LAO 3 C1 non-polymer 2 2 35 ? ? ? PRD_002470 O18 O18 O 0 1 N Y N 36.377 18.744 31.166 5.566 2.319 -0.133 LAO 3 O1 non-polymer 2 2 36 ? ? ? PRD_002470 H1 H1 H 0 1 N N N 31.226 27.003 35.252 -4.643 -0.804 1.905 GLC 1 H1 polymer 1 1 37 ? ? ? PRD_002470 H2 H2 H 0 1 N N N 31.650 28.095 37.180 -6.547 -1.470 0.485 GLC 1 H2 polymer 1 1 38 ? ? ? PRD_002470 H3 H3 H 0 1 N N N 32.818 27.414 38.739 -6.168 -2.272 -1.814 GLC 1 H3 polymer 1 1 39 ? ? ? PRD_002470 H4 H4 H 0 1 N N N 34.702 25.949 37.114 -5.532 -0.081 -2.847 GLC 1 H4 polymer 1 1 40 ? ? ? PRD_002470 H5 H5 H 0 1 N N N 33.608 24.336 36.542 -3.650 0.465 -1.351 GLC 1 H5 polymer 1 1 41 ? ? ? PRD_002470 H6 H6 H 0 1 N N N 32.281 22.943 37.543 -4.922 2.300 -2.503 GLC 1 H61 polymer 1 1 42 ? ? ? PRD_002470 H7 H7 H 0 1 N N N 33.231 23.624 38.907 -5.917 2.483 -1.038 GLC 1 H62 polymer 1 1 43 ? ? ? PRD_002470 H8 H8 H 0 1 N Y N 33.337 29.563 36.639 -5.285 -3.205 1.543 GLC 1 HO2 polymer 1 1 44 ? ? ? PRD_002470 H9 H9 H 0 1 N Y N 35.095 27.893 38.799 -3.890 -2.941 -1.519 GLC 1 HO3 polymer 1 1 45 ? ? ? PRD_002470 H10 H10 H 0 1 N Y N 34.906 24.667 39.018 -7.683 -0.328 -1.832 GLC 1 HO4 polymer 1 1 46 ? ? ? PRD_002470 H11 H11 H 0 1 N Y N 31.053 23.333 39.387 -4.044 3.967 -1.034 GLC 1 HO6 polymer 1 1 47 ? ? ? PRD_002470 H12 H12 H 0 1 N N N 32.755 27.430 31.616 -2.501 -1.667 2.926 FRU 2 H11 polymer 1 1 48 ? ? ? PRD_002470 H13 H13 H 0 1 N N N 31.451 27.803 32.794 -1.573 -0.178 3.227 FRU 2 H12 polymer 1 1 49 ? ? ? PRD_002470 H14 H14 H 0 1 N N N 33.790 25.624 31.599 -0.298 -1.403 1.672 FRU 2 H3 polymer 1 1 50 ? ? ? PRD_002470 H15 H15 H 0 1 N N N 34.026 23.868 33.997 -0.083 0.270 -0.837 FRU 2 H4 polymer 1 1 51 ? ? ? PRD_002470 H16 H16 H 0 1 N N N 31.900 23.686 31.907 -0.521 1.587 1.902 FRU 2 H5 polymer 1 1 52 ? ? ? PRD_002470 H17 H17 H 0 1 N N N 32.158 22.077 33.729 0.392 2.901 -0.080 FRU 2 H61 polymer 1 1 53 ? ? ? PRD_002470 H18 H18 H 0 1 N N N 31.959 23.406 34.920 -1.118 2.528 -0.946 FRU 2 H62 polymer 1 1 54 ? ? ? PRD_002470 H19 H19 H 0 1 N Y N 33.043 29.408 32.677 -3.825 0.004 4.003 FRU 2 HO1 polymer 1 1 55 ? ? ? PRD_002470 H20 H20 H 0 1 N Y N 35.833 25.433 32.636 -0.084 -2.378 -0.499 FRU 2 HO3 polymer 1 1 56 ? ? ? PRD_002470 H21 H21 H 0 1 N Y N 30.040 22.234 34.554 -1.249 4.611 0.215 FRU 2 HO6 polymer 1 1 57 ? ? ? PRD_002470 H22 H22 H 0 1 N N N 37.066 22.562 33.225 2.683 2.362 -0.638 LAO 3 H1A non-polymer 2 2 58 ? ? ? PRD_002470 H23 H23 H 0 1 N N N 34.520 20.340 30.311 5.116 -0.098 -1.120 LAO 3 H2 non-polymer 2 2 59 ? ? ? PRD_002470 H24 H24 H 0 1 N N N 32.613 19.340 32.360 5.911 -1.378 1.536 LAO 3 H3 non-polymer 2 2 60 ? ? ? PRD_002470 H25 H25 H 0 1 N Y N 32.381 21.560 31.644 5.401 -3.349 0.285 LAO 3 HO3 non-polymer 2 2 61 ? ? ? PRD_002470 H26 H26 H 0 1 N N N 31.282 18.395 30.707 7.741 -2.404 0.241 LAO 3 H4 non-polymer 2 2 62 ? ? ? PRD_002470 H27 H27 H 0 1 N Y N 32.045 19.676 28.871 8.039 -1.650 -2.006 LAO 3 HO4 non-polymer 2 2 63 ? ? ? PRD_002470 H28 H28 H 0 1 N N N 32.819 16.548 30.010 8.180 -0.245 1.350 LAO 3 H51 non-polymer 2 2 64 ? ? ? PRD_002470 H29 H29 H 0 1 N N N 32.922 16.950 31.758 9.075 -0.335 -0.186 LAO 3 H52 non-polymer 2 2 65 ? ? ? PRD_002470 H30 H30 H 0 1 N N N 34.922 18.272 32.472 6.190 1.148 1.451 LAO 3 H1 non-polymer 2 2 66 ? ? ? PRD_002470 H31 H31 H 0 1 N Y N 36.724 19.442 31.709 6.086 3.105 0.085 LAO 3 HO1 non-polymer 2 2 67 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_002470 C1 C2 SING N N 1 PRD_002470 C1 O4 SING N N 2 PRD_002470 C1 H1 SING N N 3 PRD_002470 C2 C3 SING N N 4 PRD_002470 C2 O1 SING N N 5 PRD_002470 C2 H2 SING N N 6 PRD_002470 C3 C4 SING N N 7 PRD_002470 C3 O2 SING N N 8 PRD_002470 C3 H3 SING N N 9 PRD_002470 C4 C5 SING N N 10 PRD_002470 C4 O3 SING N N 11 PRD_002470 C4 H4 SING N N 12 PRD_002470 C5 C6 SING N N 13 PRD_002470 C5 O4 SING N N 14 PRD_002470 C5 H5 SING N N 15 PRD_002470 C6 O5 SING N N 16 PRD_002470 C6 H6 SING N N 17 PRD_002470 C6 H7 SING N N 18 PRD_002470 O1 H8 SING N N 19 PRD_002470 O2 H9 SING N N 20 PRD_002470 O3 H10 SING N N 21 PRD_002470 O5 H11 SING N N 22 PRD_002470 C7 C8 SING N N 23 PRD_002470 C7 O6 SING N N 24 PRD_002470 C7 H12 SING N N 25 PRD_002470 C7 H13 SING N N 26 PRD_002470 C8 C9 SING N N 27 PRD_002470 C8 O7 SING N N 28 PRD_002470 C8 O10 SING N N 29 PRD_002470 C9 C10 SING N N 30 PRD_002470 C9 O8 SING N N 31 PRD_002470 C9 H14 SING N N 32 PRD_002470 C10 C11 SING N N 33 PRD_002470 C10 O9 SING N N 34 PRD_002470 C10 H15 SING N N 35 PRD_002470 C11 C12 SING N N 36 PRD_002470 C11 O10 SING N N 37 PRD_002470 C11 H16 SING N N 38 PRD_002470 C12 O11 SING N N 39 PRD_002470 C12 H17 SING N N 40 PRD_002470 C12 H18 SING N N 41 PRD_002470 O6 H19 SING N N 42 PRD_002470 O8 H20 SING N N 43 PRD_002470 O11 H21 SING N N 44 PRD_002470 C16 O17 SING N N 45 PRD_002470 C16 C15 SING N N 46 PRD_002470 O17 C17 SING N N 47 PRD_002470 O18 C17 SING N N 48 PRD_002470 C17 C13 SING N N 49 PRD_002470 C15 O16 SING N N 50 PRD_002470 C15 C14 SING N N 51 PRD_002470 C14 C13 SING N N 52 PRD_002470 C14 O15 SING N N 53 PRD_002470 C13 O14 SING N N 54 PRD_002470 O14 P1 SING N N 55 PRD_002470 P1 O13 DOUB N N 56 PRD_002470 P1 O12 SING N N 57 PRD_002470 O12 H22 SING N N 58 PRD_002470 C13 H23 SING N N 59 PRD_002470 C14 H24 SING N N 60 PRD_002470 O15 H25 SING N N 61 PRD_002470 C15 H26 SING N N 62 PRD_002470 O16 H27 SING N N 63 PRD_002470 C16 H28 SING N N 64 PRD_002470 C16 H29 SING N N 65 PRD_002470 C17 H30 SING N N 66 PRD_002470 O18 H31 SING N N 67 PRD_002470 C1 O7 SING N N 68 PRD_002470 O9 P1 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_002470 InChI InChI 1.06 "InChI=1S/C17H31O18P/c18-1-6-9(23)10(24)11(25)16(31-6)33-17(4-20)14(26)12(7(2-19)32-17)34-36(28,29)35-13-8(22)5(21)3-30-15(13)27/h5-16,18-27H,1-4H2,(H,28,29)/t5-,6+,7+,8-,9-,10+,11+,12+,13+,14-,15+,16+,17-/m0/s1" PRD_002470 InChIKey InChI 1.06 BUKOQCAFSQWRGX-FSCBZTLPSA-N PRD_002470 SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@H](O[C@]2(CO)O[C@H](CO)[C@@H](O[P](O)(=O)O[C@H]3[C@H](O)OC[C@H](O)[C@@H]3O)[C@@H]2O)[C@H](O)[C@H](O)[C@H]1O" PRD_002470 SMILES CACTVS 3.385 "OC[CH]1O[CH](O[C]2(CO)O[CH](CO)[CH](O[P](O)(=O)O[CH]3[CH](O)OC[CH](O)[CH]3O)[CH]2O)[CH](O)[CH](O)[CH]1O" PRD_002470 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@@H]([C@@H]([C@H]([C@@H](O1)O)OP(=O)(O)O[C@@H]2[C@H](O[C@@]([C@H]2O)(CO)O[C@@H]3[C@@H]([C@@H]([C@H]([C@H](O3)CO)O)O)O)CO)O)O" PRD_002470 SMILES "OpenEye OEToolkits" 2.0.7 "C1C(C(C(C(O1)O)OP(=O)(O)OC2C(OC(C2O)(CO)OC3C(C(C(C(O3)CO)O)O)O)CO)O)O" # _pdbx_chem_comp_identifier.comp_id PRD_002470 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{S},5~{S})-2,5-bis(hydroxymethyl)-5-[(2~{R},3~{R},4~{R},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-4-oxidanyl-oxolan-3-yl] [(2~{R},3~{R},4~{S},5~{S})-2,4,5-tris(oxidanyl)oxan-3-yl] hydrogen phosphate" #