data_PRDCC_002473 # _chem_comp.id PRD_002473 _chem_comp.name "Agrocinopine A (beta-L-arabinopyranose form)" _chem_comp.formula "C17 H31 O18 P" _chem_comp.formula_weight 554.391 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type saccharide _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_002473 C1 C1 C 0 1 N N S 25.801 2.553 146.415 -4.374 -0.912 0.973 GLC 1 C1 polymer 1 1 1 ? ? ? PRD_002473 C2 C2 C 0 1 N N R 25.495 1.523 147.499 -5.455 -1.739 0.271 GLC 1 C2 polymer 1 1 2 ? ? ? PRD_002473 C3 C3 C 0 1 N N S 24.552 2.141 148.526 -5.524 -1.328 -1.203 GLC 1 C3 polymer 1 1 3 ? ? ? PRD_002473 C4 C4 C 0 1 N N S 25.213 3.360 149.127 -5.795 0.177 -1.290 GLC 1 C4 polymer 1 1 4 ? ? ? PRD_002473 C5 C5 C 0 1 N N R 25.579 4.344 148.025 -4.701 0.929 -0.528 GLC 1 C5 polymer 1 1 5 ? ? ? PRD_002473 C6 C6 C 0 1 N N N 26.420 5.483 148.532 -4.997 2.430 -0.560 GLC 1 C6 polymer 1 1 6 ? ? ? PRD_002473 O1 O1 O 0 1 N N N 24.959 0.379 146.867 -5.131 -3.127 0.366 GLC 1 O2 polymer 1 1 7 ? ? ? PRD_002473 O2 O2 O 0 1 N N N 24.189 1.246 149.576 -6.580 -2.042 -1.849 GLC 1 O3 polymer 1 1 8 ? ? ? PRD_002473 O3 O3 O 0 1 N N N 24.362 4.035 150.044 -5.790 0.584 -2.660 GLC 1 O4 polymer 1 1 9 ? ? ? PRD_002473 O4 O4 O 0 1 N N N 26.373 3.689 147.021 -4.670 0.478 0.827 GLC 1 O5 polymer 1 1 10 ? ? ? PRD_002473 O5 O5 O 0 1 N N N 27.594 5.041 149.173 -3.918 3.141 0.049 GLC 1 O6 polymer 1 1 11 ? ? ? PRD_002473 C7 C7 C 0 1 N N N 24.722 1.588 143.607 -2.042 -1.111 2.561 FRU 2 C1 polymer 1 1 12 ? ? ? PRD_002473 C8 C8 C 0 1 N N R 24.589 2.975 144.222 -1.996 -0.646 1.104 FRU 2 C2 polymer 1 1 13 ? ? ? PRD_002473 C9 C9 C 0 1 N N S 23.354 3.765 143.746 -0.674 -1.096 0.452 FRU 2 C3 polymer 1 1 14 ? ? ? PRD_002473 C10 C10 C 0 1 N N S 23.778 5.189 144.044 0.036 0.229 0.080 FRU 2 C4 polymer 1 1 15 ? ? ? PRD_002473 C11 C11 C 0 1 N N R 25.238 5.151 143.579 -0.664 1.246 1.017 FRU 2 C5 polymer 1 1 16 ? ? ? PRD_002473 C12 C12 C 0 1 N N N 26.106 6.187 144.267 -0.580 2.659 0.437 FRU 2 C6 polymer 1 1 17 ? ? ? PRD_002473 O6 O6 O 0 1 N N N 23.901 0.621 144.287 -3.181 -0.540 3.207 FRU 2 O1 polymer 1 1 18 ? ? ? PRD_002473 O7 O7 O 0 1 N Y N 24.614 2.852 145.618 -3.103 -1.193 0.384 FRU 2 O2 polymer 1 1 19 ? ? ? PRD_002473 O8 O8 O 0 1 N N N 22.193 3.365 144.468 -0.932 -1.872 -0.720 FRU 2 O3 polymer 1 1 20 ? ? ? PRD_002473 O9 O9 O 0 1 N N N 25.696 3.798 143.837 -2.033 0.789 1.048 FRU 2 O5 polymer 1 1 21 ? ? ? PRD_002473 O10 O10 O 0 1 N N N 27.490 5.972 144.001 -1.128 3.591 1.372 FRU 2 O6 polymer 1 1 22 ? ? ? PRD_002473 O11 O11 O 0 1 N N N 21.781 7.015 145.294 2.513 1.834 -1.350 VDF 3 OP2 non-polymer 2 2 23 ? ? ? PRD_002473 P1 P1 P 0 1 N N N 22.042 7.179 143.828 2.567 0.333 -0.768 VDF 3 P non-polymer 2 2 24 ? ? ? PRD_002473 O12 O12 O 0 1 N N N 20.979 7.143 142.814 2.326 -0.630 -1.865 VDF 3 OP1 non-polymer 2 2 25 ? ? ? PRD_002473 O13 O13 O 0 1 N Y N 22.975 6.029 143.200 1.435 0.154 0.362 VDF 3 OP3 non-polymer 2 2 26 ? ? ? PRD_002473 O14 O14 O 0 1 N N N 22.839 8.544 143.706 4.017 0.060 -0.124 VDF 3 O2 non-polymer 2 2 27 ? ? ? PRD_002473 C13 C13 C 0 1 N N R 23.027 9.326 142.534 5.220 0.039 -0.894 VDF 3 C2 non-polymer 2 2 28 ? ? ? PRD_002473 C14 C14 C 0 1 N N S 24.561 9.471 142.273 5.888 -1.333 -0.763 VDF 3 C3 non-polymer 2 2 29 ? ? ? PRD_002473 O15 O15 O 0 1 N N N 25.056 8.219 141.833 7.056 -1.377 -1.585 VDF 3 O3 non-polymer 2 2 30 ? ? ? PRD_002473 C15 C15 C 0 1 N N S 24.831 10.542 141.228 6.281 -1.560 0.700 VDF 3 C4 non-polymer 2 2 31 ? ? ? PRD_002473 O16 O16 O 0 1 N N N 24.289 10.119 140.005 6.970 -2.806 0.821 VDF 3 O4 non-polymer 2 2 32 ? ? ? PRD_002473 C16 C16 C 0 1 N N N 24.200 11.823 141.628 7.198 -0.422 1.155 VDF 3 C5 non-polymer 2 2 33 ? ? ? PRD_002473 O17 O17 O 0 1 N N N 22.771 11.685 141.891 6.528 0.828 0.979 VDF 3 O5 non-polymer 2 2 34 ? ? ? PRD_002473 C17 C17 C 0 1 N N S 22.470 10.726 142.935 6.177 1.116 -0.378 VDF 3 C1 non-polymer 2 2 35 ? ? ? PRD_002473 O18 O18 O 0 1 N Y N 22.885 11.036 144.197 5.540 2.394 -0.444 VDF 3 O1 non-polymer 2 2 36 ? ? ? PRD_002473 H1 H1 H 0 1 N N N 26.549 2.102 145.746 -4.350 -1.170 2.032 GLC 1 H1 polymer 1 1 37 ? ? ? PRD_002473 H2 H2 H 0 1 N N N 26.436 1.264 148.005 -6.419 -1.556 0.746 GLC 1 H2 polymer 1 1 38 ? ? ? PRD_002473 H3 H3 H 0 1 N N N 23.644 2.469 147.999 -4.576 -1.557 -1.690 GLC 1 H3 polymer 1 1 39 ? ? ? PRD_002473 H4 H4 H 0 1 N N N 26.136 3.045 149.635 -6.766 0.399 -0.847 GLC 1 H4 polymer 1 1 40 ? ? ? PRD_002473 H5 H5 H 0 1 N N N 24.656 4.744 147.579 -3.736 0.739 -0.997 GLC 1 H5 polymer 1 1 41 ? ? ? PRD_002473 H6 H6 H 0 1 N N N 26.701 6.121 147.681 -5.110 2.756 -1.594 GLC 1 H61 polymer 1 1 42 ? ? ? PRD_002473 H7 H7 H 0 1 N N N 25.826 6.069 149.249 -5.919 2.630 -0.014 GLC 1 H62 polymer 1 1 43 ? ? ? PRD_002473 H8 H8 H 0 1 N Y N 24.759 -0.280 147.521 -5.066 -3.455 1.273 GLC 1 HO2 polymer 1 1 44 ? ? ? PRD_002473 H9 H9 H 0 1 N Y N 23.604 1.687 150.180 -6.477 -3.003 -1.826 GLC 1 HO3 polymer 1 1 45 ? ? ? PRD_002473 H10 H10 H 0 1 N Y N 24.814 4.792 150.398 -6.456 0.143 -3.204 GLC 1 HO4 polymer 1 1 46 ? ? ? PRD_002473 H11 H11 H 0 1 N Y N 28.092 5.791 149.476 -4.038 4.101 0.064 GLC 1 HO6 polymer 1 1 47 ? ? ? PRD_002473 H12 H12 H 0 1 N N N 24.416 1.636 142.552 -2.113 -2.199 2.593 FRU 2 H11 polymer 1 1 48 ? ? ? PRD_002473 H13 H13 H 0 1 N N N 25.773 1.270 143.670 -1.135 -0.791 3.074 FRU 2 H12 polymer 1 1 49 ? ? ? PRD_002473 H14 H14 H 0 1 N N N 23.221 3.629 142.663 -0.072 -1.664 1.162 FRU 2 H3 polymer 1 1 50 ? ? ? PRD_002473 H15 H15 H 0 1 N N N 23.693 5.433 145.113 -0.136 0.481 -0.966 FRU 2 H4 polymer 1 1 51 ? ? ? PRD_002473 H16 H16 H 0 1 N N N 25.260 5.342 142.496 -0.224 1.215 2.014 FRU 2 H5 polymer 1 1 52 ? ? ? PRD_002473 H17 H17 H 0 1 N N N 25.824 7.187 143.905 0.463 2.910 0.242 FRU 2 H61 polymer 1 1 53 ? ? ? PRD_002473 H18 H18 H 0 1 N N N 25.938 6.130 145.353 -1.145 2.704 -0.494 FRU 2 H62 polymer 1 1 54 ? ? ? PRD_002473 H19 H19 H 0 1 N Y N 24.009 -0.230 143.878 -3.274 -0.792 4.136 FRU 2 HO1 polymer 1 1 55 ? ? ? PRD_002473 H20 H20 H 0 1 N Y N 21.443 3.861 144.162 -0.134 -2.181 -1.170 FRU 2 HO3 polymer 1 1 56 ? ? ? PRD_002473 H21 H21 H 0 1 N Y N 28.005 6.636 144.445 -1.107 4.509 1.069 FRU 2 HO6 polymer 1 1 57 ? ? ? PRD_002473 H22 H22 H 0 1 N N N 20.850 6.890 145.438 2.663 2.519 -0.685 VDF 3 H1A non-polymer 2 2 58 ? ? ? PRD_002473 H23 H23 H 0 1 N N N 22.507 8.926 141.651 4.986 0.232 -1.941 VDF 3 H2 non-polymer 2 2 59 ? ? ? PRD_002473 H24 H24 H 0 1 N N N 25.046 9.764 143.216 5.191 -2.110 -1.079 VDF 3 H3 non-polymer 2 2 60 ? ? ? PRD_002473 H25 H25 H 0 1 N Y N 24.881 7.559 142.494 7.530 -2.219 -1.551 VDF 3 HO3 non-polymer 2 2 61 ? ? ? PRD_002473 H26 H26 H 0 1 N N N 25.918 10.684 141.138 5.385 -1.577 1.319 VDF 3 H4 non-polymer 2 2 62 ? ? ? PRD_002473 H27 H27 H 0 1 N Y N 24.692 9.298 139.747 7.250 -3.015 1.723 VDF 3 HO4 non-polymer 2 2 63 ? ? ? PRD_002473 H28 H28 H 0 1 N N N 24.340 12.553 140.818 7.447 -0.555 2.208 VDF 3 H51 non-polymer 2 2 64 ? ? ? PRD_002473 H29 H29 H 0 1 N N N 24.693 12.189 142.541 8.112 -0.432 0.562 VDF 3 H52 non-polymer 2 2 65 ? ? ? PRD_002473 H30 H30 H 0 1 N N N 21.376 10.613 142.957 7.078 1.127 -0.992 VDF 3 H1 non-polymer 2 2 66 ? ? ? PRD_002473 H31 H31 H 0 1 N Y N 22.634 10.340 144.793 6.090 3.124 -0.130 VDF 3 HO1 non-polymer 2 2 67 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_002473 C1 C2 SING N N 1 PRD_002473 C1 O4 SING N N 2 PRD_002473 C1 H1 SING N N 3 PRD_002473 C2 C3 SING N N 4 PRD_002473 C2 O1 SING N N 5 PRD_002473 C2 H2 SING N N 6 PRD_002473 C3 C4 SING N N 7 PRD_002473 C3 O2 SING N N 8 PRD_002473 C3 H3 SING N N 9 PRD_002473 C4 C5 SING N N 10 PRD_002473 C4 O3 SING N N 11 PRD_002473 C4 H4 SING N N 12 PRD_002473 C5 C6 SING N N 13 PRD_002473 C5 O4 SING N N 14 PRD_002473 C5 H5 SING N N 15 PRD_002473 C6 O5 SING N N 16 PRD_002473 C6 H6 SING N N 17 PRD_002473 C6 H7 SING N N 18 PRD_002473 O1 H8 SING N N 19 PRD_002473 O2 H9 SING N N 20 PRD_002473 O3 H10 SING N N 21 PRD_002473 O5 H11 SING N N 22 PRD_002473 C7 C8 SING N N 23 PRD_002473 C7 O6 SING N N 24 PRD_002473 C7 H12 SING N N 25 PRD_002473 C7 H13 SING N N 26 PRD_002473 C8 C9 SING N N 27 PRD_002473 C8 O7 SING N N 28 PRD_002473 C8 O9 SING N N 29 PRD_002473 C9 C10 SING N N 30 PRD_002473 C9 O8 SING N N 31 PRD_002473 C9 H14 SING N N 32 PRD_002473 C10 C11 SING N N 33 PRD_002473 C10 H15 SING N N 34 PRD_002473 C11 C12 SING N N 35 PRD_002473 C11 O9 SING N N 36 PRD_002473 C11 H16 SING N N 37 PRD_002473 C12 O10 SING N N 38 PRD_002473 C12 H17 SING N N 39 PRD_002473 C12 H18 SING N N 40 PRD_002473 O6 H19 SING N N 41 PRD_002473 O8 H20 SING N N 42 PRD_002473 O10 H21 SING N N 43 PRD_002473 O18 C17 SING N N 44 PRD_002473 C16 O17 SING N N 45 PRD_002473 C16 C15 SING N N 46 PRD_002473 O17 C17 SING N N 47 PRD_002473 C17 C13 SING N N 48 PRD_002473 C15 C14 SING N N 49 PRD_002473 C15 O16 SING N N 50 PRD_002473 C14 C13 SING N N 51 PRD_002473 C14 O15 SING N N 52 PRD_002473 C13 O14 SING N N 53 PRD_002473 O14 P1 SING N N 54 PRD_002473 O12 P1 DOUB N N 55 PRD_002473 P1 O13 SING N N 56 PRD_002473 P1 O11 SING N N 57 PRD_002473 O11 H22 SING N N 58 PRD_002473 C13 H23 SING N N 59 PRD_002473 C14 H24 SING N N 60 PRD_002473 O15 H25 SING N N 61 PRD_002473 C15 H26 SING N N 62 PRD_002473 O16 H27 SING N N 63 PRD_002473 C16 H28 SING N N 64 PRD_002473 C16 H29 SING N N 65 PRD_002473 C17 H30 SING N N 66 PRD_002473 O18 H31 SING N N 67 PRD_002473 C1 O7 SING N N 68 PRD_002473 C10 O13 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_002473 InChI InChI 1.06 "InChI=1S/C17H31O18P/c18-1-6-9(23)10(24)11(25)16(31-6)33-17(4-20)14(26)12(7(2-19)32-17)34-36(28,29)35-13-8(22)5(21)3-30-15(13)27/h5-16,18-27H,1-4H2,(H,28,29)/t5-,6+,7+,8-,9+,10-,11+,12+,13+,14-,15-,16+,17-/m0/s1" PRD_002473 InChIKey InChI 1.06 BUKOQCAFSQWRGX-OWOBWKAYSA-N PRD_002473 SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@H](O[C@]2(CO)O[C@H](CO)[C@@H](O[P](O)(=O)O[C@H]3[C@@H](O)OC[C@H](O)[C@@H]3O)[C@@H]2O)[C@H](O)[C@@H](O)[C@@H]1O" PRD_002473 SMILES CACTVS 3.385 "OC[CH]1O[CH](O[C]2(CO)O[CH](CO)[CH](O[P](O)(=O)O[CH]3[CH](O)OC[CH](O)[CH]3O)[CH]2O)[CH](O)[CH](O)[CH]1O" PRD_002473 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@@H]([C@@H]([C@H]([C@H](O1)O)OP(=O)(O)O[C@@H]2[C@H](O[C@@]([C@H]2O)(CO)O[C@@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)CO)O)O" PRD_002473 SMILES "OpenEye OEToolkits" 2.0.7 "C1C(C(C(C(O1)O)OP(=O)(O)OC2C(OC(C2O)(CO)OC3C(C(C(C(O3)CO)O)O)O)CO)O)O" # _pdbx_chem_comp_identifier.comp_id PRD_002473 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{S},5~{S})-2,5-bis(hydroxymethyl)-5-[(2~{R},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-4-oxidanyl-oxolan-3-yl] [(2~{S},3~{R},4~{S},5~{S})-2,4,5-tris(oxidanyl)oxan-3-yl] hydrogen phosphate" #