data_PRDCC_002506 # _chem_comp.id PRD_002506 _chem_comp.name "Agrocinopine C-like (D-glucos-2-yl sucros-4-yl phosphate; alpha-D-glucose form)" _chem_comp.formula "C18 H33 O19 P" _chem_comp.formula_weight 584.417 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type saccharide _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_002506 C1 C1 C 0 1 N N S 9.698 -0.727 -11.877 -3.619 -1.655 -0.645 GLC 1 C1 polymer 1 1 1 ? ? ? PRD_002506 C2 C2 C 0 1 N N R 10.219 -2.053 -11.361 -2.714 -2.860 -0.371 GLC 1 C2 polymer 1 1 2 ? ? ? PRD_002506 C3 C3 C 0 1 N N S 11.656 -2.242 -11.824 -1.411 -2.374 0.271 GLC 1 C3 polymer 1 1 3 ? ? ? PRD_002506 C4 C4 C 0 1 N N S 11.723 -2.170 -13.349 -0.750 -1.349 -0.656 GLC 1 C4 polymer 1 1 4 ? ? ? PRD_002506 C5 C5 C 0 1 N N R 11.127 -0.850 -13.826 -1.730 -0.203 -0.919 GLC 1 C5 polymer 1 1 5 ? ? ? PRD_002506 C6 C6 C 0 1 N N N 11.024 -0.769 -15.332 -1.100 0.795 -1.892 GLC 1 C6 polymer 1 1 6 ? ? ? PRD_002506 O1 O1 O 0 1 N N N 10.135 -2.065 -9.935 -3.377 -3.762 0.517 GLC 1 O2 polymer 1 1 7 ? ? ? PRD_002506 O2 O2 O 0 1 N N N 12.147 -3.499 -11.373 -0.531 -3.483 0.463 GLC 1 O3 polymer 1 1 8 ? ? ? PRD_002506 O3 O3 O 0 1 N N N 13.142 -1.948 -13.558 0.430 -0.835 -0.035 GLC 1 O4 polymer 1 1 9 ? ? ? PRD_002506 O4 O4 O 0 1 N N N 9.792 -0.694 -13.307 -2.932 -0.727 -1.487 GLC 1 O5 polymer 1 1 10 ? ? ? PRD_002506 O5 O5 O 0 1 N N N 9.825 -1.375 -15.815 -1.965 1.921 -2.047 GLC 1 O6 polymer 1 1 11 ? ? ? PRD_002506 C7 C7 C 0 1 N N N 9.010 1.213 -9.210 -6.212 -0.618 -0.193 FRU 2 C1 polymer 1 1 12 ? ? ? PRD_002506 C8 C8 C 0 1 N N R 9.894 1.479 -10.417 -4.970 -0.022 0.473 FRU 2 C2 polymer 1 1 13 ? ? ? PRD_002506 C9 C9 C 0 1 N N S 10.943 2.592 -10.216 -5.334 0.521 1.869 FRU 2 C3 polymer 1 1 14 ? ? ? PRD_002506 C10 C10 C 0 1 N N S 10.938 3.271 -11.589 -5.052 2.040 1.771 FRU 2 C4 polymer 1 1 15 ? ? ? PRD_002506 C11 C11 C 0 1 N N R 9.511 3.090 -12.101 -5.090 2.279 0.240 FRU 2 C5 polymer 1 1 16 ? ? ? PRD_002506 C12 C12 C 0 1 N N N 9.364 2.933 -13.599 -4.271 3.517 -0.132 FRU 2 C6 polymer 1 1 17 ? ? ? PRD_002506 O6 O6 O 0 1 N N N 9.712 0.513 -8.194 -5.910 -0.954 -1.549 FRU 2 O1 polymer 1 1 18 ? ? ? PRD_002506 O7 O7 O 0 1 N Y N 10.417 0.321 -11.238 -3.954 -1.020 0.590 FRU 2 O2 polymer 1 1 19 ? ? ? PRD_002506 O8 O8 O 0 1 N N N 12.213 2.068 -9.832 -4.508 -0.078 2.870 FRU 2 O3 polymer 1 1 20 ? ? ? PRD_002506 O9 O9 O 0 1 N N N 11.282 4.645 -11.466 -6.073 2.792 2.430 FRU 2 O4 polymer 1 1 21 ? ? ? PRD_002506 O10 O10 O 0 1 N N N 9.026 1.903 -11.468 -4.483 1.086 -0.302 FRU 2 O5 polymer 1 1 22 ? ? ? PRD_002506 O11 O11 O 0 1 N N N 7.991 2.859 -13.974 -4.417 3.782 -1.529 FRU 2 O6 polymer 1 1 23 ? ? ? PRD_002506 C13 C13 C 0 1 N N S 16.502 -1.348 -16.799 4.667 1.464 -0.292 ALX 3 C1 non-polymer 2 2 24 ? ? ? PRD_002506 O12 O12 O 0 1 N Y N 15.880 -1.825 -18.030 4.378 2.134 0.936 ALX 3 O1 non-polymer 2 2 25 ? ? ? PRD_002506 O13 O13 O 0 1 N N N 14.388 -1.899 -15.799 2.962 -0.175 0.216 ALX 3 O2 non-polymer 2 2 26 ? ? ? PRD_002506 C14 C14 C 0 1 N N R 15.422 -0.912 -15.866 4.335 -0.024 -0.152 ALX 3 C2 non-polymer 2 2 27 ? ? ? PRD_002506 C15 C15 C 0 1 N N S 14.750 0.342 -16.385 5.226 -0.638 0.932 ALX 3 C3 non-polymer 2 2 28 ? ? ? PRD_002506 C16 C16 C 0 1 N N R 16.774 0.881 -17.715 6.935 1.101 0.397 ALX 3 C5 non-polymer 2 2 29 ? ? ? PRD_002506 C17 C17 C 0 1 N N N 17.847 1.888 -18.104 8.385 1.341 -0.029 ALX 3 C6 non-polymer 2 2 30 ? ? ? PRD_002506 P1 P1 P 0 1 N N N 14.117 -2.817 -14.550 1.896 -0.978 -0.684 ALX 3 PAM non-polymer 2 2 31 ? ? ? PRD_002506 O14 O14 O 0 1 N N N 13.397 -4.023 -15.029 1.886 -0.419 -2.054 ALX 3 OAO non-polymer 2 2 32 ? ? ? PRD_002506 O15 O15 O 0 1 N N N 15.420 -2.901 -13.863 2.307 -2.534 -0.742 ALX 3 OAP non-polymer 2 2 33 ? ? ? PRD_002506 O16 O16 O 0 1 N N N 13.786 0.782 -15.395 4.975 -2.042 1.019 ALX 3 O3 non-polymer 2 2 34 ? ? ? PRD_002506 C18 C18 C 0 1 N N S 15.720 1.424 -16.719 6.694 -0.402 0.565 ALX 3 C4 non-polymer 2 2 35 ? ? ? PRD_002506 O17 O17 O 0 1 N N N 14.999 2.549 -17.307 7.534 -0.906 1.605 ALX 3 O4 non-polymer 2 2 36 ? ? ? PRD_002506 O18 O18 O 0 1 N N N 18.499 2.356 -16.912 8.641 2.746 -0.074 ALX 3 O6 non-polymer 2 2 37 ? ? ? PRD_002506 O19 O19 O 0 1 N N N 17.417 -0.291 -17.146 6.053 1.614 -0.604 ALX 3 O5 non-polymer 2 2 38 ? ? ? PRD_002506 H1 H1 H 0 1 N N N 8.638 -0.653 -11.593 -4.530 -1.990 -1.141 GLC 1 H1 polymer 1 1 39 ? ? ? PRD_002506 H2 H2 H 0 1 N N N 9.604 -2.863 -11.780 -2.491 -3.368 -1.309 GLC 1 H2 polymer 1 1 40 ? ? ? PRD_002506 H3 H3 H 0 1 N N N 12.269 -1.428 -11.408 -1.629 -1.909 1.232 GLC 1 H3 polymer 1 1 41 ? ? ? PRD_002506 H4 H4 H 0 1 N N N 11.308 -3.055 -13.854 -0.487 -1.827 -1.600 GLC 1 H4 polymer 1 1 42 ? ? ? PRD_002506 H5 H5 H 0 1 N N N 11.764 -0.027 -13.469 -1.961 0.301 0.019 GLC 1 H5 polymer 1 1 43 ? ? ? PRD_002506 H6 H6 H 0 1 N N N 11.035 0.289 -15.633 -0.139 1.127 -1.500 GLC 1 H61 polymer 1 1 44 ? ? ? PRD_002506 H7 H7 H 0 1 N N N 11.888 -1.285 -15.776 -0.951 0.315 -2.859 GLC 1 H62 polymer 1 1 45 ? ? ? PRD_002506 H8 H8 H 0 1 N Y N 10.460 -2.894 -9.605 -4.214 -4.106 0.177 GLC 1 HO2 polymer 1 1 46 ? ? ? PRD_002506 H9 H9 H 0 1 N Y N 13.044 -3.612 -11.665 -0.889 -4.175 1.035 GLC 1 HO3 polymer 1 1 47 ? ? ? PRD_002506 H10 H10 H 0 1 N Y N 9.794 -1.306 -16.762 -1.628 2.597 -2.652 GLC 1 HO6 polymer 1 1 48 ? ? ? PRD_002506 H11 H11 H 0 1 N N N 8.660 2.174 -8.805 -6.516 -1.516 0.344 FRU 2 H11 polymer 1 1 49 ? ? ? PRD_002506 H12 H12 H 0 1 N N N 8.145 0.611 -9.526 -7.021 0.111 -0.171 FRU 2 H12 polymer 1 1 50 ? ? ? PRD_002506 H13 H13 H 0 1 N N N 10.572 3.301 -9.461 -6.387 0.342 2.085 FRU 2 H3 polymer 1 1 51 ? ? ? PRD_002506 H14 H14 H 0 1 N N N 11.637 2.748 -12.258 -4.069 2.280 2.178 FRU 2 H4 polymer 1 1 52 ? ? ? PRD_002506 H15 H15 H 0 1 N N N 8.913 3.955 -11.778 -6.118 2.382 -0.107 FRU 2 H5 polymer 1 1 53 ? ? ? PRD_002506 H16 H16 H 0 1 N N N 9.827 3.797 -14.098 -4.627 4.374 0.439 FRU 2 H61 polymer 1 1 54 ? ? ? PRD_002506 H17 H17 H 0 1 N N N 9.873 2.011 -13.915 -3.220 3.339 0.096 FRU 2 H62 polymer 1 1 55 ? ? ? PRD_002506 H18 H18 H 0 1 N Y N 9.134 0.362 -7.455 -6.653 -1.338 -2.034 FRU 2 HO1 polymer 1 1 56 ? ? ? PRD_002506 H19 H19 H 0 1 N Y N 12.829 2.782 -9.718 -4.694 0.228 3.768 FRU 2 HO3 polymer 1 1 57 ? ? ? PRD_002506 H20 H20 H 0 1 N Y N 11.275 5.052 -12.324 -5.940 3.749 2.396 FRU 2 HO4 polymer 1 1 58 ? ? ? PRD_002506 H21 H21 H 0 1 N Y N 7.925 2.761 -14.917 -3.923 4.555 -1.836 FRU 2 HO6 polymer 1 1 59 ? ? ? PRD_002506 H22 H22 H 0 1 N N N 17.058 -2.174 -16.333 4.065 1.896 -1.092 ALX 3 H1 non-polymer 2 2 60 ? ? ? PRD_002506 H23 H23 H 0 1 N Y N 15.270 -2.525 -17.827 4.565 3.083 0.919 ALX 3 HO1 non-polymer 2 2 61 ? ? ? PRD_002506 H24 H24 H 0 1 N N N 15.844 -0.719 -14.868 4.515 -0.529 -1.101 ALX 3 H2 non-polymer 2 2 62 ? ? ? PRD_002506 H25 H25 H 0 1 N N N 14.209 0.075 -17.305 5.009 -0.168 1.892 ALX 3 H3 non-polymer 2 2 63 ? ? ? PRD_002506 H26 H26 H 0 1 N N N 16.243 0.583 -18.631 6.745 1.607 1.343 ALX 3 H5 non-polymer 2 2 64 ? ? ? PRD_002506 H27 H27 H 0 1 N N N 17.384 2.736 -18.629 9.057 0.872 0.690 ALX 3 H61 non-polymer 2 2 65 ? ? ? PRD_002506 H28 H28 H 0 1 N N N 18.584 1.406 -18.763 8.550 0.909 -1.016 ALX 3 H62 non-polymer 2 2 66 ? ? ? PRD_002506 H29 H29 H 0 1 N N N 15.684 -3.811 -13.795 2.334 -2.966 0.123 ALX 3 H9 non-polymer 2 2 67 ? ? ? PRD_002506 H30 H30 H 0 1 N Y N 13.183 0.074 -15.203 5.506 -2.496 1.688 ALX 3 HO3 non-polymer 2 2 68 ? ? ? PRD_002506 H31 H31 H 0 1 N N N 16.235 1.748 -15.803 6.923 -0.914 -0.369 ALX 3 H4 non-polymer 2 2 69 ? ? ? PRD_002506 H32 H32 H 0 1 N Y N 14.356 2.873 -16.687 8.479 -0.786 1.441 ALX 3 HO4 non-polymer 2 2 70 ? ? ? PRD_002506 H33 H33 H 0 1 N Y N 19.171 2.986 -17.145 9.544 2.973 -0.337 ALX 3 HO6 non-polymer 2 2 71 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_002506 C1 C2 SING N N 1 PRD_002506 C1 O4 SING N N 2 PRD_002506 C1 H1 SING N N 3 PRD_002506 C2 C3 SING N N 4 PRD_002506 C2 O1 SING N N 5 PRD_002506 C2 H2 SING N N 6 PRD_002506 C3 C4 SING N N 7 PRD_002506 C3 O2 SING N N 8 PRD_002506 C3 H3 SING N N 9 PRD_002506 C4 C5 SING N N 10 PRD_002506 C4 O3 SING N N 11 PRD_002506 C4 H4 SING N N 12 PRD_002506 C5 C6 SING N N 13 PRD_002506 C5 O4 SING N N 14 PRD_002506 C5 H5 SING N N 15 PRD_002506 C6 O5 SING N N 16 PRD_002506 C6 H6 SING N N 17 PRD_002506 C6 H7 SING N N 18 PRD_002506 O1 H8 SING N N 19 PRD_002506 O2 H9 SING N N 20 PRD_002506 O5 H10 SING N N 21 PRD_002506 C7 C8 SING N N 22 PRD_002506 C7 O6 SING N N 23 PRD_002506 C7 H11 SING N N 24 PRD_002506 C7 H12 SING N N 25 PRD_002506 C8 C9 SING N N 26 PRD_002506 C8 O7 SING N N 27 PRD_002506 C8 O10 SING N N 28 PRD_002506 C9 C10 SING N N 29 PRD_002506 C9 O8 SING N N 30 PRD_002506 C9 H13 SING N N 31 PRD_002506 C10 C11 SING N N 32 PRD_002506 C10 O9 SING N N 33 PRD_002506 C10 H14 SING N N 34 PRD_002506 C11 C12 SING N N 35 PRD_002506 C11 O10 SING N N 36 PRD_002506 C11 H15 SING N N 37 PRD_002506 C12 O11 SING N N 38 PRD_002506 C12 H16 SING N N 39 PRD_002506 C12 H17 SING N N 40 PRD_002506 O6 H18 SING N N 41 PRD_002506 O8 H19 SING N N 42 PRD_002506 O9 H20 SING N N 43 PRD_002506 O11 H21 SING N N 44 PRD_002506 C17 O18 SING N N 45 PRD_002506 C17 C16 SING N N 46 PRD_002506 C16 O19 SING N N 47 PRD_002506 C16 C18 SING N N 48 PRD_002506 O19 C13 SING N N 49 PRD_002506 O12 C13 SING N N 50 PRD_002506 O17 C18 SING N N 51 PRD_002506 C13 C14 SING N N 52 PRD_002506 C18 C15 SING N N 53 PRD_002506 C15 C14 SING N N 54 PRD_002506 C15 O16 SING N N 55 PRD_002506 C14 O13 SING N N 56 PRD_002506 O13 P1 SING N N 57 PRD_002506 O14 P1 DOUB N N 58 PRD_002506 P1 O15 SING N N 59 PRD_002506 C13 H22 SING N N 60 PRD_002506 O12 H23 SING N N 61 PRD_002506 C14 H24 SING N N 62 PRD_002506 C15 H25 SING N N 63 PRD_002506 C16 H26 SING N N 64 PRD_002506 C17 H27 SING N N 65 PRD_002506 C17 H28 SING N N 66 PRD_002506 O15 H29 SING N N 67 PRD_002506 O16 H30 SING N N 68 PRD_002506 C18 H31 SING N N 69 PRD_002506 O17 H32 SING N N 70 PRD_002506 O18 H33 SING N N 71 PRD_002506 C1 O7 SING N N 72 PRD_002506 O3 P1 SING N N 73 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_002506 SMILES_CANONICAL CACTVS 3.385 "OC[C@@H]1O[C@@H](O)[C@H](O[P](O)(=O)O[C@@H]2[C@H](O)[C@@H](O)[C@H](O[C@@H]2CO)O[C@]3(CO)O[C@H](CO)[C@@H](O)[C@@H]3O)[C@H](O)[C@@H]1O" PRD_002506 SMILES CACTVS 3.385 "OC[CH]1O[CH](O)[CH](O[P](O)(=O)O[CH]2[CH](O)[CH](O)[CH](O[CH]2CO)O[C]3(CO)O[CH](CO)[CH](O)[CH]3O)[CH](O)[CH]1O" PRD_002506 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)OP(=O)(O)O[C@@H]2[C@H](O[C@@H]([C@@H]([C@H]2O)O)O[C@]3([C@H]([C@@H]([C@H](O3)CO)O)O)CO)CO)O)O)O" PRD_002506 SMILES "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(C(O1)O)OP(=O)(O)OC2C(OC(C(C2O)O)OC3(C(C(C(O3)CO)O)O)CO)CO)O)O)O" # _pdbx_chem_comp_identifier.comp_id PRD_002506 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{R},5~{R},6~{R})-6-[(2~{S},3~{S},4~{S},5~{R})-2,5-bis(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]oxy-2-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-3-yl] [(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-2,4,5-tris(oxidanyl)oxan-3-yl] hydrogen phosphate" #