data_PRDCC_002508 # _chem_comp.id PRD_002508 _chem_comp.name "Agrocinopine C-like (D-glucos-2-yl sucros-3-yl phosphate; beta-D-glucose form)" _chem_comp.formula "C18 H33 O19 P" _chem_comp.formula_weight 584.417 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type saccharide _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_pcm ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_002508 C1 C1 C 0 1 N N S 26.118 4.281 145.051 2.799 -0.549 1.576 GLC 1 C1 polymer 1 1 1 ? ? ? PRD_002508 C2 C2 C 0 1 N N R 25.207 5.362 144.476 1.291 -0.589 1.839 GLC 1 C2 polymer 1 1 2 ? ? ? PRD_002508 C3 C3 C 0 1 N N S 23.748 5.069 144.822 0.581 0.319 0.831 GLC 1 C3 polymer 1 1 3 ? ? ? PRD_002508 C4 C4 C 0 1 N N S 23.393 3.666 144.342 1.153 1.735 0.943 GLC 1 C4 polymer 1 1 4 ? ? ? PRD_002508 C5 C5 C 0 1 N N R 24.320 2.676 145.036 2.666 1.685 0.715 GLC 1 C5 polymer 1 1 5 ? ? ? PRD_002508 C6 C6 C 0 1 N N N 24.061 1.240 144.646 3.255 3.087 0.886 GLC 1 C6 polymer 1 1 6 ? ? ? PRD_002508 O1 O1 O 0 1 N N N 25.665 6.617 144.993 0.816 -1.929 1.693 GLC 1 O2 polymer 1 1 7 ? ? ? PRD_002508 O2 O2 O 0 1 N N N 22.935 6.004 144.020 -0.820 0.346 1.115 GLC 1 O3 polymer 1 1 8 ? ? ? PRD_002508 O3 O3 O 0 1 N N N 22.036 3.319 144.593 0.549 2.575 -0.043 GLC 1 O4 polymer 1 1 9 ? ? ? PRD_002508 O4 O4 O 0 1 N N N 25.678 2.978 144.657 3.261 0.800 1.666 GLC 1 O5 polymer 1 1 10 ? ? ? PRD_002508 O5 O5 O 0 1 N N N 24.081 1.099 143.233 4.646 3.063 0.559 GLC 1 O6 polymer 1 1 11 ? ? ? PRD_002508 C7 C7 C 0 1 N N N 26.622 5.005 148.806 5.057 -2.179 1.081 FRU 2 C1 polymer 1 1 12 ? ? ? PRD_002508 C8 C8 C 0 1 N N R 26.895 4.041 147.664 4.455 -1.274 0.003 FRU 2 C2 polymer 1 1 13 ? ? ? PRD_002508 C9 C9 C 0 1 N N S 27.020 2.556 148.059 4.629 -1.924 -1.383 FRU 2 C3 polymer 1 1 14 ? ? ? PRD_002508 C10 C10 C 0 1 N N S 28.020 2.084 147.001 5.529 -0.932 -2.158 FRU 2 C4 polymer 1 1 15 ? ? ? PRD_002508 C11 C11 C 0 1 N N R 29.015 3.233 147.076 6.201 -0.138 -1.008 FRU 2 C5 polymer 1 1 16 ? ? ? PRD_002508 C12 C12 C 0 1 N N N 29.958 3.355 145.903 6.645 1.243 -1.495 FRU 2 C6 polymer 1 1 17 ? ? ? PRD_002508 O6 O6 O 0 1 N N N 27.737 5.072 149.683 5.055 -1.493 2.334 FRU 2 O1 polymer 1 1 18 ? ? ? PRD_002508 O7 O7 O 0 1 N Y N 26.163 4.419 146.457 3.068 -1.059 0.269 FRU 2 O2 polymer 1 1 19 ? ? ? PRD_002508 O8 O8 O 0 1 N N N 25.754 1.900 147.991 3.364 -2.063 -2.033 FRU 2 O3 polymer 1 1 20 ? ? ? PRD_002508 O9 O9 O 0 1 N N N 28.617 0.818 147.272 6.506 -1.628 -2.935 FRU 2 O4 polymer 1 1 21 ? ? ? PRD_002508 O10 O10 O 0 1 N N N 28.169 4.394 147.122 5.152 -0.017 -0.024 FRU 2 O5 polymer 1 1 22 ? ? ? PRD_002508 O11 O11 O 0 1 N N N 30.544 4.652 145.862 7.362 1.908 -0.453 FRU 2 O6 polymer 1 1 23 ? ? ? PRD_002508 P1 P1 P 0 1 N N N 21.993 7.128 144.452 -1.938 -0.132 0.060 BNX 3 PAM non-polymer 2 2 24 ? ? ? PRD_002508 O12 O12 O 0 1 N N N 20.855 7.236 143.483 -1.770 0.612 -1.209 BNX 3 OAO non-polymer 2 2 25 ? ? ? PRD_002508 O13 O13 O 0 1 N N N 21.640 7.033 145.920 -1.773 -1.710 -0.219 BNX 3 OAP non-polymer 2 2 26 ? ? ? PRD_002508 O14 O14 O 0 1 N N N 22.870 8.492 144.427 -3.402 0.157 0.662 BNX 3 O2 non-polymer 2 2 27 ? ? ? PRD_002508 C13 C13 C 0 1 N N R 23.040 9.302 143.248 -4.605 -0.061 -0.079 BNX 3 C2 non-polymer 2 2 28 ? ? ? PRD_002508 C14 C14 C 0 1 N N S 24.529 9.508 143.034 -5.372 1.259 -0.208 BNX 3 C3 non-polymer 2 2 29 ? ? ? PRD_002508 O15 O15 O 0 1 N N N 25.101 8.249 142.705 -4.592 2.194 -0.955 BNX 3 O3 non-polymer 2 2 30 ? ? ? PRD_002508 C15 C15 C 0 1 N N S 24.776 10.522 141.928 -6.695 0.998 -0.935 BNX 3 C4 non-polymer 2 2 31 ? ? ? PRD_002508 O16 O16 O 0 1 N N N 26.177 10.737 141.799 -7.452 2.209 -0.998 BNX 3 O4 non-polymer 2 2 32 ? ? ? PRD_002508 C16 C16 C 0 1 N N R 24.047 11.818 142.281 -7.490 -0.063 -0.168 BNX 3 C5 non-polymer 2 2 33 ? ? ? PRD_002508 C17 C17 C 0 1 N N N 24.180 12.888 141.239 -8.786 -0.372 -0.920 BNX 3 C6 non-polymer 2 2 34 ? ? ? PRD_002508 O17 O17 O 0 1 N N N 23.780 12.397 139.954 -9.580 -1.276 -0.148 BNX 3 O6 non-polymer 2 2 35 ? ? ? PRD_002508 O18 O18 O 0 1 N N N 22.642 11.547 142.450 -6.707 -1.253 -0.057 BNX 3 O5 non-polymer 2 2 36 ? ? ? PRD_002508 C18 C18 C 0 1 N N R 22.329 10.628 143.499 -5.479 -1.082 0.654 BNX 3 C1 non-polymer 2 2 37 ? ? ? PRD_002508 O19 O19 O 0 1 N Y N 20.993 10.770 143.749 -4.793 -2.333 0.728 BNX 3 O1 non-polymer 2 2 38 ? ? ? PRD_002508 H1 H1 H 0 1 N N N 27.126 4.449 144.645 3.313 -1.160 2.318 GLC 1 H1 polymer 1 1 39 ? ? ? PRD_002508 H2 H2 H 0 1 N N N 25.310 5.355 143.381 1.088 -0.238 2.851 GLC 1 H2 polymer 1 1 40 ? ? ? PRD_002508 H3 H3 H 0 1 N N N 23.563 5.181 145.901 0.742 -0.060 -0.178 GLC 1 H3 polymer 1 1 41 ? ? ? PRD_002508 H4 H4 H 0 1 N N N 23.589 3.616 143.261 0.948 2.133 1.937 GLC 1 H4 polymer 1 1 42 ? ? ? PRD_002508 H5 H5 H 0 1 N N N 24.201 2.780 146.125 2.870 1.326 -0.293 GLC 1 H5 polymer 1 1 43 ? ? ? PRD_002508 H6 H6 H 0 1 N N N 24.840 0.599 145.085 2.738 3.781 0.223 GLC 1 H61 polymer 1 1 44 ? ? ? PRD_002508 H7 H7 H 0 1 N N N 23.076 0.933 145.027 3.130 3.411 1.919 GLC 1 H62 polymer 1 1 45 ? ? ? PRD_002508 H8 H8 H 0 1 N Y N 25.119 7.317 144.655 1.227 -2.560 2.298 GLC 1 HO2 polymer 1 1 46 ? ? ? PRD_002508 H9 H9 H 0 1 N Y N 21.870 2.439 144.276 0.866 3.489 -0.029 GLC 1 HO4 polymer 1 1 47 ? ? ? PRD_002508 H10 H10 H 0 1 N Y N 23.917 0.192 143.002 5.085 3.920 0.645 GLC 1 HO6 polymer 1 1 48 ? ? ? PRD_002508 H11 H11 H 0 1 N N N 26.425 6.006 148.395 4.463 -3.089 1.164 FRU 2 H11 polymer 1 1 49 ? ? ? PRD_002508 H12 H12 H 0 1 N N N 25.741 4.660 149.367 6.081 -2.436 0.809 FRU 2 H12 polymer 1 1 50 ? ? ? PRD_002508 H13 H13 H 0 1 N N N 27.465 2.472 149.062 5.120 -2.893 -1.292 FRU 2 H3 polymer 1 1 51 ? ? ? PRD_002508 H14 H14 H 0 1 N N N 27.534 2.084 146.014 4.931 -0.273 -2.787 FRU 2 H4 polymer 1 1 52 ? ? ? PRD_002508 H15 H15 H 0 1 N N N 29.598 3.147 148.005 7.048 -0.691 -0.604 FRU 2 H5 polymer 1 1 53 ? ? ? PRD_002508 H16 H16 H 0 1 N N N 30.754 2.602 146.000 7.290 1.132 -2.366 FRU 2 H61 polymer 1 1 54 ? ? ? PRD_002508 H17 H17 H 0 1 N N N 29.400 3.181 144.971 5.768 1.832 -1.765 FRU 2 H62 polymer 1 1 55 ? ? ? PRD_002508 H18 H18 H 0 1 N Y N 27.549 5.678 150.390 5.423 -2.008 3.065 FRU 2 HO1 polymer 1 1 56 ? ? ? PRD_002508 H19 H19 H 0 1 N Y N 25.856 0.988 148.238 3.414 -2.467 -2.910 FRU 2 HO3 polymer 1 1 57 ? ? ? PRD_002508 H20 H20 H 0 1 N Y N 29.222 0.597 146.574 7.094 -1.049 -3.438 FRU 2 HO4 polymer 1 1 58 ? ? ? PRD_002508 H21 H21 H 0 1 N Y N 31.133 4.710 145.119 7.675 2.791 -0.692 FRU 2 HO6 polymer 1 1 59 ? ? ? PRD_002508 H22 H22 H 0 1 N N N 20.696 7.057 146.021 -1.871 -2.260 0.570 BNX 3 H2A non-polymer 2 2 60 ? ? ? PRD_002508 H23 H23 H 0 1 N N N 22.603 8.809 142.367 -4.359 -0.438 -1.071 BNX 3 H2 non-polymer 2 2 61 ? ? ? PRD_002508 H24 H24 H 0 1 N N N 24.970 9.890 143.967 -5.573 1.662 0.785 BNX 3 H3 non-polymer 2 2 62 ? ? ? PRD_002508 H25 H25 H 0 1 N Y N 24.935 7.632 143.408 -5.018 3.054 -1.076 BNX 3 HO3 non-polymer 2 2 63 ? ? ? PRD_002508 H26 H26 H 0 1 N N N 24.364 10.129 140.987 -6.492 0.642 -1.945 BNX 3 H4 non-polymer 2 2 64 ? ? ? PRD_002508 H27 H27 H 0 1 N Y N 26.605 9.918 141.580 -8.304 2.118 -1.446 BNX 3 HO4 non-polymer 2 2 65 ? ? ? PRD_002508 H28 H28 H 0 1 N N N 24.461 12.198 143.227 -7.727 0.310 0.828 BNX 3 H5 non-polymer 2 2 66 ? ? ? PRD_002508 H29 H29 H 0 1 N N N 25.229 13.215 141.190 -9.341 0.552 -1.082 BNX 3 H61 non-polymer 2 2 67 ? ? ? PRD_002508 H30 H30 H 0 1 N N N 23.542 13.741 141.514 -8.549 -0.828 -1.881 BNX 3 H62 non-polymer 2 2 68 ? ? ? PRD_002508 H31 H31 H 0 1 N Y N 23.871 13.088 139.308 -10.419 -1.516 -0.564 BNX 3 HO6 non-polymer 2 2 69 ? ? ? PRD_002508 H32 H32 H 0 1 N N N 22.837 11.033 144.386 -5.690 -0.723 1.661 BNX 3 H1 non-polymer 2 2 70 ? ? ? PRD_002508 H33 H33 H 0 1 N Y N 20.735 10.176 144.444 -5.290 -3.029 1.181 BNX 3 HO1 non-polymer 2 2 71 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_002508 C1 C2 SING N N 1 PRD_002508 C1 O4 SING N N 2 PRD_002508 C1 H1 SING N N 3 PRD_002508 C2 C3 SING N N 4 PRD_002508 C2 O1 SING N N 5 PRD_002508 C2 H2 SING N N 6 PRD_002508 C3 C4 SING N N 7 PRD_002508 C3 O2 SING N N 8 PRD_002508 C3 H3 SING N N 9 PRD_002508 C4 C5 SING N N 10 PRD_002508 C4 O3 SING N N 11 PRD_002508 C4 H4 SING N N 12 PRD_002508 C5 C6 SING N N 13 PRD_002508 C5 O4 SING N N 14 PRD_002508 C5 H5 SING N N 15 PRD_002508 C6 O5 SING N N 16 PRD_002508 C6 H6 SING N N 17 PRD_002508 C6 H7 SING N N 18 PRD_002508 O1 H8 SING N N 19 PRD_002508 O3 H9 SING N N 20 PRD_002508 O5 H10 SING N N 21 PRD_002508 C7 C8 SING N N 22 PRD_002508 C7 O6 SING N N 23 PRD_002508 C7 H11 SING N N 24 PRD_002508 C7 H12 SING N N 25 PRD_002508 C8 C9 SING N N 26 PRD_002508 C8 O7 SING N N 27 PRD_002508 C8 O10 SING N N 28 PRD_002508 C9 C10 SING N N 29 PRD_002508 C9 O8 SING N N 30 PRD_002508 C9 H13 SING N N 31 PRD_002508 C10 C11 SING N N 32 PRD_002508 C10 O9 SING N N 33 PRD_002508 C10 H14 SING N N 34 PRD_002508 C11 C12 SING N N 35 PRD_002508 C11 O10 SING N N 36 PRD_002508 C11 H15 SING N N 37 PRD_002508 C12 O11 SING N N 38 PRD_002508 C12 H16 SING N N 39 PRD_002508 C12 H17 SING N N 40 PRD_002508 O6 H18 SING N N 41 PRD_002508 O8 H19 SING N N 42 PRD_002508 O9 H20 SING N N 43 PRD_002508 O11 H21 SING N N 44 PRD_002508 C17 O17 SING N N 45 PRD_002508 C17 C16 SING N N 46 PRD_002508 C16 O18 SING N N 47 PRD_002508 C16 C15 SING N N 48 PRD_002508 O18 C18 SING N N 49 PRD_002508 C18 O19 SING N N 50 PRD_002508 C18 C13 SING N N 51 PRD_002508 O16 C15 SING N N 52 PRD_002508 C15 C14 SING N N 53 PRD_002508 C14 C13 SING N N 54 PRD_002508 C14 O15 SING N N 55 PRD_002508 C13 O14 SING N N 56 PRD_002508 O14 P1 SING N N 57 PRD_002508 P1 O12 DOUB N N 58 PRD_002508 P1 O13 SING N N 59 PRD_002508 O13 H22 SING N N 60 PRD_002508 C13 H23 SING N N 61 PRD_002508 C14 H24 SING N N 62 PRD_002508 O15 H25 SING N N 63 PRD_002508 C15 H26 SING N N 64 PRD_002508 O16 H27 SING N N 65 PRD_002508 C16 H28 SING N N 66 PRD_002508 C17 H29 SING N N 67 PRD_002508 C17 H30 SING N N 68 PRD_002508 O17 H31 SING N N 69 PRD_002508 C18 H32 SING N N 70 PRD_002508 O19 H33 SING N N 71 PRD_002508 C1 O7 SING N N 72 PRD_002508 O2 P1 SING N N 73 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_002508 SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@@H](O)[C@H](O[P](O)(=O)O[C@@H]2[C@H](O)[C@@H](CO)O[C@H](O[C@]3(CO)O[C@H](CO)[C@@H](O)[C@@H]3O)[C@@H]2O)[C@@H](O)[C@@H]1O" PRD_002508 SMILES CACTVS 3.385 "OC[CH]1O[CH](O)[CH](O[P](O)(=O)O[CH]2[CH](O)[CH](CO)O[CH](O[C]3(CO)O[CH](CO)[CH](O)[CH]3O)[CH]2O)[CH](O)[CH]1O" PRD_002508 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)O)OP(=O)(O)O[C@H]2[C@@H]([C@H](O[C@@H]([C@@H]2O)O[C@]3([C@H]([C@@H]([C@H](O3)CO)O)O)CO)CO)O)O)O)O" PRD_002508 SMILES "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(C(O1)O)OP(=O)(O)OC2C(C(OC(C2O)OC3(C(C(C(O3)CO)O)O)CO)CO)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id PRD_002508 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{R},4~{S},5~{R},6~{R})-2-[(2~{S},3~{S},4~{S},5~{R})-2,5-bis(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]oxy-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-4-yl] [(2~{R},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-2,4,5-tris(oxidanyl)oxan-3-yl] hydrogen phosphate" #