data_PRDCC_002533 # _chem_comp.id PRD_002533 _chem_comp.name "Deacylated Microviridin J" _chem_comp.formula "C67 H97 N17 O20" _chem_comp.formula_weight 1460.589 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_002533 N1 N1 N 0 1 N N N -31.996 17.762 12.751 ? ? ? ILE 1 N polymer 1 1 1 ? ? ? PRD_002533 C1 C1 C 0 1 N N S -30.932 16.887 12.172 ? ? ? ILE 1 CA polymer 1 1 2 ? ? ? PRD_002533 C2 C2 C 0 1 N N N -31.633 15.806 11.365 ? ? ? ILE 1 C polymer 1 1 3 ? ? ? PRD_002533 O1 O1 O 0 1 N N N -32.087 14.806 11.913 ? ? ? ILE 1 O polymer 1 1 4 ? ? ? PRD_002533 C3 C3 C 0 1 N N S -29.983 16.266 13.225 ? ? ? ILE 1 CB polymer 1 1 5 ? ? ? PRD_002533 C4 C4 C 0 1 N N N -29.039 17.304 13.829 ? ? ? ILE 1 CG1 polymer 1 1 6 ? ? ? PRD_002533 C5 C5 C 0 1 N N N -29.181 15.106 12.638 ? ? ? ILE 1 CG2 polymer 1 1 7 ? ? ? PRD_002533 C6 C6 C 0 1 N N N -27.979 16.715 14.732 ? ? ? ILE 1 CD1 polymer 1 1 8 ? ? ? PRD_002533 N2 N2 N 0 1 N N N -31.670 16.022 10.053 ? ? ? SER 2 N polymer 1 1 9 ? ? ? PRD_002533 C7 C7 C 0 1 N N S -32.205 15.056 9.122 ? ? ? SER 2 CA polymer 1 1 10 ? ? ? PRD_002533 C8 C8 C 0 1 N N N -31.085 14.652 8.143 ? ? ? SER 2 C polymer 1 1 11 ? ? ? PRD_002533 O2 O2 O 0 1 N N N -30.524 15.472 7.432 ? ? ? SER 2 O polymer 1 1 12 ? ? ? PRD_002533 C9 C9 C 0 1 N N N -33.476 15.649 8.545 ? ? ? SER 2 CB polymer 1 1 13 ? ? ? PRD_002533 O3 O3 O 0 1 N N N -33.904 15.039 7.354 ? ? ? SER 2 OG polymer 1 1 14 ? ? ? PRD_002533 N3 N3 N 0 1 N N N -30.643 13.387 8.217 ? ? ? THR 3 N polymer 1 1 15 ? ? ? PRD_002533 C10 C10 C 0 1 N N S -29.632 12.833 7.319 ? ? ? THR 3 CA polymer 1 1 16 ? ? ? PRD_002533 C11 C11 C 0 1 N N N -30.218 12.761 5.914 ? ? ? THR 3 C polymer 1 1 17 ? ? ? PRD_002533 O4 O4 O 0 1 N N N -31.435 12.840 5.720 ? ? ? THR 3 O polymer 1 1 18 ? ? ? PRD_002533 C12 C12 C 0 1 N N R -29.109 11.492 7.850 ? ? ? THR 3 CB polymer 1 1 19 ? ? ? PRD_002533 O5 O5 O 0 1 N N N -30.224 10.667 8.240 ? ? ? THR 3 OG1 polymer 1 1 20 ? ? ? PRD_002533 C13 C13 C 0 1 N N N -28.169 11.646 9.027 ? ? ? THR 3 CG2 polymer 1 1 21 ? ? ? PRD_002533 N4 N4 N 0 1 N N N -29.336 12.563 4.943 ? ? ? ARG 4 N polymer 1 1 22 ? ? ? PRD_002533 C14 C14 C 0 1 N N S -29.648 12.800 3.541 ? ? ? ARG 4 CA polymer 1 1 23 ? ? ? PRD_002533 C15 C15 C 0 1 N N N -29.436 11.540 2.713 ? ? ? ARG 4 C polymer 1 1 24 ? ? ? PRD_002533 O6 O6 O 0 1 N N N -29.161 11.591 1.507 ? ? ? ARG 4 O polymer 1 1 25 ? ? ? PRD_002533 C16 C16 C 0 1 N N N -28.848 14.015 3.068 ? ? ? ARG 4 CB polymer 1 1 26 ? ? ? PRD_002533 C17 C17 C 0 1 N N N -29.412 15.284 3.689 ? ? ? ARG 4 CG polymer 1 1 27 ? ? ? PRD_002533 C18 C18 C 0 1 N N N -28.769 16.586 3.252 ? ? ? ARG 4 CD polymer 1 1 28 ? ? ? PRD_002533 N5 N5 N 0 1 N N N -29.671 17.715 3.505 ? ? ? ARG 4 NE polymer 1 1 29 ? ? ? PRD_002533 C19 C19 C 0 1 N N N -29.379 18.993 3.288 ? ? ? ARG 4 CZ polymer 1 1 30 ? ? ? PRD_002533 N6 N6 N 0 1 N N N -28.224 19.329 2.713 ? ? ? ARG 4 NH1 polymer 1 1 31 ? ? ? PRD_002533 N7 N7 N 1 1 N N N -30.255 19.924 3.642 ? ? ? ARG 4 NH2 polymer 1 1 32 ? ? ? PRD_002533 N8 N8 N 0 1 N N N -29.684 10.412 3.376 ? ? ? LYS 5 N polymer 1 1 33 ? ? ? PRD_002533 C20 C20 C 0 1 N N S -29.771 9.123 2.728 ? ? ? LYS 5 CA polymer 1 1 34 ? ? ? PRD_002533 C21 C21 C 0 1 N N N -31.151 8.977 2.110 ? ? ? LYS 5 C polymer 1 1 35 ? ? ? PRD_002533 O7 O7 O 0 1 N N N -32.119 9.550 2.614 ? ? ? LYS 5 O polymer 1 1 36 ? ? ? PRD_002533 C22 C22 C 0 1 N N N -29.481 8.046 3.770 ? ? ? LYS 5 CB polymer 1 1 37 ? ? ? PRD_002533 C23 C23 C 0 1 N N N -29.626 6.632 3.286 ? ? ? LYS 5 CG polymer 1 1 38 ? ? ? PRD_002533 C24 C24 C 0 1 N N N -28.972 5.669 4.228 ? ? ? LYS 5 CD polymer 1 1 39 ? ? ? PRD_002533 C25 C25 C 0 1 N N N -29.545 4.266 4.135 ? ? ? LYS 5 CE polymer 1 1 40 ? ? ? PRD_002533 N9 N9 N 1 1 N N N -30.794 3.644 4.902 ? ? ? LYS 5 NZ polymer 1 1 41 ? ? ? PRD_002533 N10 N10 N 0 1 N N N -31.206 8.189 1.029 ? ? ? TYR 6 N polymer 1 1 42 ? ? ? PRD_002533 C26 C26 C 0 1 N N S -32.452 7.923 0.343 ? ? ? TYR 6 CA polymer 1 1 43 ? ? ? PRD_002533 C27 C27 C 0 1 N N N -33.068 6.596 0.800 ? ? ? TYR 6 C polymer 1 1 44 ? ? ? PRD_002533 O8 O8 O 0 1 N N N -32.373 5.585 0.870 ? ? ? TYR 6 O polymer 1 1 45 ? ? ? PRD_002533 C28 C28 C 0 1 N N N -32.248 7.856 -1.167 ? ? ? TYR 6 CB polymer 1 1 46 ? ? ? PRD_002533 C29 C29 C 0 1 Y N N -33.505 7.402 -1.872 ? ? ? TYR 6 CG polymer 1 1 47 ? ? ? PRD_002533 C30 C30 C 0 1 Y N N -33.787 6.044 -2.010 ? ? ? TYR 6 CD1 polymer 1 1 48 ? ? ? PRD_002533 C31 C31 C 0 1 Y N N -34.429 8.332 -2.335 ? ? ? TYR 6 CD2 polymer 1 1 49 ? ? ? PRD_002533 C32 C32 C 0 1 Y N N -34.939 5.626 -2.649 ? ? ? TYR 6 CE1 polymer 1 1 50 ? ? ? PRD_002533 C33 C33 C 0 1 Y N N -35.601 7.922 -2.956 ? ? ? TYR 6 CE2 polymer 1 1 51 ? ? ? PRD_002533 C34 C34 C 0 1 Y N N -35.836 6.563 -3.122 ? ? ? TYR 6 CZ polymer 1 1 52 ? ? ? PRD_002533 O9 O9 O 0 1 N N N -36.972 6.146 -3.731 ? ? ? TYR 6 OH polymer 1 1 53 ? ? ? PRD_002533 N11 N11 N 0 1 N N N -34.398 6.514 1.054 ? ? ? PRO 7 N polymer 1 1 54 ? ? ? PRD_002533 C35 C35 C 0 1 N N S -35.321 7.644 0.910 ? ? ? PRO 7 CA polymer 1 1 55 ? ? ? PRD_002533 C36 C36 C 0 1 N N N -35.298 8.588 2.106 ? ? ? PRO 7 C polymer 1 1 56 ? ? ? PRD_002533 O10 O10 O 0 1 N N N -35.731 9.723 1.987 ? ? ? PRO 7 O polymer 1 1 57 ? ? ? PRD_002533 C37 C37 C 0 1 N N N -36.712 7.004 0.773 ? ? ? PRO 7 CB polymer 1 1 58 ? ? ? PRD_002533 C38 C38 C 0 1 N N N -36.565 5.568 1.255 ? ? ? PRO 7 CG polymer 1 1 59 ? ? ? PRD_002533 C39 C39 C 0 1 N N N -35.093 5.272 1.452 ? ? ? PRO 7 CD polymer 1 1 60 ? ? ? PRD_002533 N12 N12 N 0 1 N N N -34.826 8.087 3.254 ? ? ? SER 8 N polymer 1 1 61 ? ? ? PRD_002533 C40 C40 C 0 1 N N S -34.576 8.884 4.439 ? ? ? SER 8 CA polymer 1 1 62 ? ? ? PRD_002533 C41 C41 C 0 1 N N N -33.789 8.052 5.434 ? ? ? SER 8 C polymer 1 1 63 ? ? ? PRD_002533 O11 O11 O 0 1 N N N -33.762 6.826 5.329 ? ? ? SER 8 O polymer 1 1 64 ? ? ? PRD_002533 C42 C42 C 0 1 N N N -35.843 9.360 5.081 ? ? ? SER 8 CB polymer 1 1 65 ? ? ? PRD_002533 O12 O12 O 0 1 N N N -36.603 8.260 5.548 ? ? ? SER 8 OG polymer 1 1 66 ? ? ? PRD_002533 N13 N13 N 0 1 N N N -33.225 8.712 6.443 ? ? ? ASP 9 N polymer 1 1 67 ? ? ? PRD_002533 C43 C43 C 0 1 N N S -32.555 7.976 7.507 ? ? ? ASP 9 CA polymer 1 1 68 ? ? ? PRD_002533 C44 C44 C 0 1 N N N -33.580 7.133 8.286 ? ? ? ASP 9 C polymer 1 1 69 ? ? ? PRD_002533 O13 O13 O 0 1 N N N -33.372 5.953 8.489 ? ? ? ASP 9 O polymer 1 1 70 ? ? ? PRD_002533 C45 C45 C 0 1 N N N -31.713 8.910 8.371 ? ? ? ASP 9 CB polymer 1 1 71 ? ? ? PRD_002533 C46 C46 C 0 1 N N N -30.498 9.494 7.660 ? ? ? ASP 9 CG polymer 1 1 72 ? ? ? PRD_002533 O14 O14 O 0 1 N N N -30.583 9.791 6.445 ? ? ? ASP 9 OD1 polymer 1 1 73 ? ? ? PRD_002533 N14 N14 N 0 1 N N N -34.712 7.723 8.697 ? ? ? TRP 10 N polymer 1 1 74 ? ? ? PRD_002533 C47 C47 C 0 1 N N S -35.687 7.033 9.543 ? ? ? TRP 10 CA polymer 1 1 75 ? ? ? PRD_002533 C48 C48 C 0 1 N N N -36.391 5.872 8.839 ? ? ? TRP 10 C polymer 1 1 76 ? ? ? PRD_002533 O15 O15 O 0 1 N N N -36.859 4.960 9.493 ? ? ? TRP 10 O polymer 1 1 77 ? ? ? PRD_002533 C49 C49 C 0 1 N N N -36.723 8.046 10.057 ? ? ? TRP 10 CB polymer 1 1 78 ? ? ? PRD_002533 C50 C50 C 0 1 Y N N -37.580 8.691 8.997 ? ? ? TRP 10 CG polymer 1 1 79 ? ? ? PRD_002533 C51 C51 C 0 1 Y N N -37.382 9.914 8.423 ? ? ? TRP 10 CD1 polymer 1 1 80 ? ? ? PRD_002533 C52 C52 C 0 1 Y N N -38.802 8.174 8.428 ? ? ? TRP 10 CD2 polymer 1 1 81 ? ? ? PRD_002533 N15 N15 N 0 1 Y N N -38.386 10.184 7.529 ? ? ? TRP 10 NE1 polymer 1 1 82 ? ? ? PRD_002533 C53 C53 C 0 1 Y N N -39.275 9.145 7.512 ? ? ? TRP 10 CE2 polymer 1 1 83 ? ? ? PRD_002533 C54 C54 C 0 1 Y N N -39.552 7.003 8.618 ? ? ? TRP 10 CE3 polymer 1 1 84 ? ? ? PRD_002533 C55 C55 C 0 1 Y N N -40.445 8.970 6.781 ? ? ? TRP 10 CZ2 polymer 1 1 85 ? ? ? PRD_002533 C56 C56 C 0 1 Y N N -40.714 6.830 7.892 ? ? ? TRP 10 CZ3 polymer 1 1 86 ? ? ? PRD_002533 C57 C57 C 0 1 Y N N -41.146 7.800 6.977 ? ? ? TRP 10 CH2 polymer 1 1 87 ? ? ? PRD_002533 N16 N16 N 0 1 N N N -36.480 5.901 7.512 ? ? ? GLU 11 N polymer 1 1 88 ? ? ? PRD_002533 C58 C58 C 0 1 N N S -37.219 4.900 6.757 ? ? ? GLU 11 CA polymer 1 1 89 ? ? ? PRD_002533 C59 C59 C 0 1 N N N -36.470 3.582 6.612 ? ? ? GLU 11 C polymer 1 1 90 ? ? ? PRD_002533 O16 O16 O 0 1 N N N -36.840 2.789 5.746 ? ? ? GLU 11 O polymer 1 1 91 ? ? ? PRD_002533 C60 C60 C 0 1 N N N -37.461 5.359 5.325 ? ? ? GLU 11 CB polymer 1 1 92 ? ? ? PRD_002533 C61 C61 C 0 1 N N N -38.426 6.507 5.211 ? ? ? GLU 11 CG polymer 1 1 93 ? ? ? PRD_002533 C62 C62 C 0 1 N N N -37.758 7.847 4.989 ? ? ? GLU 11 CD polymer 1 1 94 ? ? ? PRD_002533 O17 O17 O 0 1 N N N -37.912 8.355 3.888 ? ? ? GLU 11 OE2 polymer 1 1 95 ? ? ? PRD_002533 N17 N17 N 0 1 N N N -35.433 3.352 7.428 ? ? ? GLU 12 N polymer 1 1 96 ? ? ? PRD_002533 C63 C63 C 0 1 N N S -34.664 2.116 7.346 ? ? ? GLU 12 CA polymer 1 1 97 ? ? ? PRD_002533 C64 C64 C 0 1 N N N -34.190 1.729 8.754 ? ? ? GLU 12 C polymer 1 1 98 ? ? ? PRD_002533 O18 O18 O 0 1 N N N -34.889 0.925 9.371 ? ? ? GLU 12 O polymer 1 1 99 ? ? ? PRD_002533 C65 C65 C 0 1 N N N -33.491 2.283 6.362 ? ? ? GLU 12 CB polymer 1 1 100 ? ? ? PRD_002533 C66 C66 C 0 1 N N N -32.246 2.907 6.980 ? ? ? GLU 12 CG polymer 1 1 101 ? ? ? PRD_002533 C67 C67 C 0 1 N N N -31.345 3.696 6.039 ? ? ? GLU 12 CD polymer 1 1 102 ? ? ? PRD_002533 O19 O19 O 0 1 N N N -30.861 4.767 6.483 ? ? ? GLU 12 OE2 polymer 1 1 103 ? ? ? PRD_002533 O20 O20 O 0 1 N Y N ? ? ? ? ? ? GLU 12 OXT polymer 1 1 104 ? ? ? PRD_002533 H1 H1 H 0 1 N N N -31.573 18.489 13.292 ? ? ? ILE 1 H polymer 1 1 105 ? ? ? PRD_002533 H2 H2 H 0 1 N Y N -32.534 18.167 12.011 ? ? ? ILE 1 H2 polymer 1 1 106 ? ? ? PRD_002533 H3 H3 H 0 1 N N N -30.322 17.489 11.482 ? ? ? ILE 1 HA polymer 1 1 107 ? ? ? PRD_002533 H4 H4 H 0 1 N N N -30.607 15.866 14.038 ? ? ? ILE 1 HB polymer 1 1 108 ? ? ? PRD_002533 H5 H5 H 0 0 N N N -28.537 17.836 13.007 ? ? ? ILE 1 HG12 polymer 1 1 109 ? ? ? PRD_002533 H6 H6 H 0 0 N N N -29.637 18.016 14.416 ? ? ? ILE 1 HG13 polymer 1 1 110 ? ? ? PRD_002533 H7 H7 H 0 0 N N N -28.519 14.689 13.411 ? ? ? ILE 1 HG21 polymer 1 1 111 ? ? ? PRD_002533 H8 H8 H 0 0 N N N -29.871 14.325 12.286 ? ? ? ILE 1 HG22 polymer 1 1 112 ? ? ? PRD_002533 H9 H9 H 0 0 N N N -28.576 15.469 11.794 ? ? ? ILE 1 HG23 polymer 1 1 113 ? ? ? PRD_002533 H10 H10 H 0 0 N N N -27.343 17.521 15.126 ? ? ? ILE 1 HD11 polymer 1 1 114 ? ? ? PRD_002533 H11 H11 H 0 0 N N N -28.462 16.188 15.568 ? ? ? ILE 1 HD12 polymer 1 1 115 ? ? ? PRD_002533 H12 H12 H 0 0 N N N -27.362 16.007 14.159 ? ? ? ILE 1 HD13 polymer 1 1 116 ? ? ? PRD_002533 H13 H13 H 0 1 N N N -31.314 16.886 9.698 ? ? ? SER 2 H polymer 1 1 117 ? ? ? PRD_002533 H14 H14 H 0 1 N N N -32.487 14.153 9.683 ? ? ? SER 2 HA polymer 1 1 118 ? ? ? PRD_002533 H15 H15 H 0 1 N N N -34.276 15.546 9.293 ? ? ? SER 2 HB2 polymer 1 1 119 ? ? ? PRD_002533 H16 H16 H 0 1 N N N -33.299 16.716 8.343 ? ? ? SER 2 HB3 polymer 1 1 120 ? ? ? PRD_002533 H17 H17 H 0 1 N N N -34.701 15.459 7.051 ? ? ? SER 2 HG polymer 1 1 121 ? ? ? PRD_002533 H18 H18 H 0 1 N N N -31.026 12.792 8.924 ? ? ? THR 3 H polymer 1 1 122 ? ? ? PRD_002533 H19 H19 H 0 1 N N N -28.780 13.529 7.287 ? ? ? THR 3 HA polymer 1 1 123 ? ? ? PRD_002533 H20 H20 H 0 1 N N N -28.561 10.996 7.036 ? ? ? THR 3 HB polymer 1 1 124 ? ? ? PRD_002533 H21 H21 H 0 0 N N N -27.831 10.653 9.359 ? ? ? THR 3 HG21 polymer 1 1 125 ? ? ? PRD_002533 H22 H22 H 0 0 N N N -27.299 12.247 8.725 ? ? ? THR 3 HG22 polymer 1 1 126 ? ? ? PRD_002533 H23 H23 H 0 0 N N N -28.694 12.150 9.852 ? ? ? THR 3 HG23 polymer 1 1 127 ? ? ? PRD_002533 H24 H24 H 0 1 N N N -28.421 12.238 5.184 ? ? ? ARG 4 H polymer 1 1 128 ? ? ? PRD_002533 H25 H25 H 0 1 N N N -30.713 13.064 3.468 ? ? ? ARG 4 HA polymer 1 1 129 ? ? ? PRD_002533 H26 H26 H 0 1 N N N -27.796 13.898 3.369 ? ? ? ARG 4 HB2 polymer 1 1 130 ? ? ? PRD_002533 H27 H27 H 0 1 N N N -28.910 14.087 1.972 ? ? ? ARG 4 HB3 polymer 1 1 131 ? ? ? PRD_002533 H28 H28 H 0 1 N N N -30.481 15.336 3.435 ? ? ? ARG 4 HG2 polymer 1 1 132 ? ? ? PRD_002533 H29 H29 H 0 1 N N N -29.298 15.203 4.780 ? ? ? ARG 4 HG3 polymer 1 1 133 ? ? ? PRD_002533 H30 H30 H 0 1 N N N -27.836 16.735 3.814 ? ? ? ARG 4 HD2 polymer 1 1 134 ? ? ? PRD_002533 H31 H31 H 0 1 N N N -28.545 16.536 2.176 ? ? ? ARG 4 HD3 polymer 1 1 135 ? ? ? PRD_002533 H32 H32 H 0 1 N N N -30.578 17.506 3.870 ? ? ? ARG 4 HE polymer 1 1 136 ? ? ? PRD_002533 H33 H33 H 0 0 N N N -28.011 20.291 2.544 ? ? ? ARG 4 HH11 polymer 1 1 137 ? ? ? PRD_002533 H34 H34 H 0 0 N N N -27.571 18.619 2.450 ? ? ? ARG 4 HH12 polymer 1 1 138 ? ? ? PRD_002533 H35 H35 H 0 0 N N N -30.052 20.889 3.478 ? ? ? ARG 4 HH21 polymer 1 1 139 ? ? ? PRD_002533 H36 H36 H 0 0 N N N -31.118 19.660 4.073 ? ? ? ARG 4 HH22 polymer 1 1 140 ? ? ? PRD_002533 H37 H37 H 0 1 N N N -29.816 10.459 4.366 ? ? ? LYS 5 H polymer 1 1 141 ? ? ? PRD_002533 H38 H38 H 0 1 N N N -29.016 9.055 1.931 ? ? ? LYS 5 HA polymer 1 1 142 ? ? ? PRD_002533 H39 H39 H 0 1 N N N -28.447 8.181 4.120 ? ? ? LYS 5 HB2 polymer 1 1 143 ? ? ? PRD_002533 H40 H40 H 0 1 N N N -30.175 8.191 4.611 ? ? ? LYS 5 HB3 polymer 1 1 144 ? ? ? PRD_002533 H41 H41 H 0 1 N N N -30.696 6.387 3.208 ? ? ? LYS 5 HG2 polymer 1 1 145 ? ? ? PRD_002533 H42 H42 H 0 1 N N N -29.155 6.541 2.296 ? ? ? LYS 5 HG3 polymer 1 1 146 ? ? ? PRD_002533 H43 H43 H 0 1 N N N -27.898 5.625 3.995 ? ? ? LYS 5 HD2 polymer 1 1 147 ? ? ? PRD_002533 H44 H44 H 0 1 N N N -29.109 6.036 5.256 ? ? ? LYS 5 HD3 polymer 1 1 148 ? ? ? PRD_002533 H45 H45 H 0 1 N N N -29.787 4.139 3.069 ? ? ? LYS 5 HE2 polymer 1 1 149 ? ? ? PRD_002533 H46 H46 H 0 1 N N N -28.704 3.608 4.402 ? ? ? LYS 5 HE3 polymer 1 1 150 ? ? ? PRD_002533 H47 H47 H 0 1 N N N -31.549 3.906 4.301 ? ? ? LYS 5 HZ2 polymer 1 1 151 ? ? ? PRD_002533 H48 H48 H 0 1 N N N -30.619 2.664 4.809 ? ? ? LYS 5 HZ3 polymer 1 1 152 ? ? ? PRD_002533 H49 H49 H 0 1 N N N -30.364 7.773 0.687 ? ? ? TYR 6 H polymer 1 1 153 ? ? ? PRD_002533 H50 H50 H 0 1 N N N -33.168 8.729 0.561 ? ? ? TYR 6 HA polymer 1 1 154 ? ? ? PRD_002533 H51 H51 H 0 1 N N N -31.971 8.855 -1.536 ? ? ? TYR 6 HB2 polymer 1 1 155 ? ? ? PRD_002533 H52 H52 H 0 1 N N N -31.437 7.146 -1.388 ? ? ? TYR 6 HB3 polymer 1 1 156 ? ? ? PRD_002533 H53 H53 H 0 1 N N N -33.099 5.312 -1.614 ? ? ? TYR 6 HD1 polymer 1 1 157 ? ? ? PRD_002533 H54 H54 H 0 1 N N N -34.233 9.387 -2.210 ? ? ? TYR 6 HD2 polymer 1 1 158 ? ? ? PRD_002533 H55 H55 H 0 1 N N N -35.137 4.572 -2.778 ? ? ? TYR 6 HE1 polymer 1 1 159 ? ? ? PRD_002533 H56 H56 H 0 1 N N N -36.319 8.649 -3.305 ? ? ? TYR 6 HE2 polymer 1 1 160 ? ? ? PRD_002533 H57 H57 H 0 1 N N N -37.483 6.900 -3.999 ? ? ? TYR 6 HH polymer 1 1 161 ? ? ? PRD_002533 H58 H58 H 0 1 N N N -35.090 8.208 -0.005 ? ? ? PRO 7 HA polymer 1 1 162 ? ? ? PRD_002533 H59 H59 H 0 1 N N N -37.443 7.542 1.394 ? ? ? PRO 7 HB2 polymer 1 1 163 ? ? ? PRD_002533 H60 H60 H 0 1 N N N -37.039 7.023 -0.277 ? ? ? PRO 7 HB3 polymer 1 1 164 ? ? ? PRD_002533 H61 H61 H 0 1 N N N -37.099 5.441 2.208 ? ? ? PRO 7 HG2 polymer 1 1 165 ? ? ? PRD_002533 H62 H62 H 0 1 N N N -36.984 4.881 0.505 ? ? ? PRO 7 HG3 polymer 1 1 166 ? ? ? PRD_002533 H63 H63 H 0 1 N N N -34.779 4.432 0.815 ? ? ? PRO 7 HD2 polymer 1 1 167 ? ? ? PRD_002533 H64 H64 H 0 1 N N N -34.884 5.032 2.505 ? ? ? PRO 7 HD3 polymer 1 1 168 ? ? ? PRD_002533 H65 H65 H 0 1 N N N -34.635 7.106 3.297 ? ? ? SER 8 H polymer 1 1 169 ? ? ? PRD_002533 H66 H66 H 0 1 N N N -33.971 9.761 4.165 ? ? ? SER 8 HA polymer 1 1 170 ? ? ? PRD_002533 H67 H67 H 0 1 N N N -35.596 10.016 5.929 ? ? ? SER 8 HB2 polymer 1 1 171 ? ? ? PRD_002533 H68 H68 H 0 1 N N N -36.434 9.922 4.343 ? ? ? SER 8 HB3 polymer 1 1 172 ? ? ? PRD_002533 H69 H69 H 0 1 N N N -33.261 9.711 6.471 ? ? ? ASP 9 H polymer 1 1 173 ? ? ? PRD_002533 H70 H70 H 0 1 N N N -31.859 7.267 7.034 ? ? ? ASP 9 HA polymer 1 1 174 ? ? ? PRD_002533 H71 H71 H 0 1 N N N -32.351 9.742 8.703 ? ? ? ASP 9 HB2 polymer 1 1 175 ? ? ? PRD_002533 H72 H72 H 0 1 N N N -31.361 8.346 9.247 ? ? ? ASP 9 HB3 polymer 1 1 176 ? ? ? PRD_002533 H73 H73 H 0 1 N N N -34.896 8.665 8.416 ? ? ? TRP 10 H polymer 1 1 177 ? ? ? PRD_002533 H74 H74 H 0 1 N N N -35.161 6.623 10.418 ? ? ? TRP 10 HA polymer 1 1 178 ? ? ? PRD_002533 H75 H75 H 0 1 N N N -37.389 7.523 10.760 ? ? ? TRP 10 HB2 polymer 1 1 179 ? ? ? PRD_002533 H76 H76 H 0 1 N N N -36.183 8.844 10.588 ? ? ? TRP 10 HB3 polymer 1 1 180 ? ? ? PRD_002533 H77 H77 H 0 1 N N N -36.555 10.573 8.641 ? ? ? TRP 10 HD1 polymer 1 1 181 ? ? ? PRD_002533 H78 H78 H 0 1 N N N -38.457 11.013 6.975 ? ? ? TRP 10 HE1 polymer 1 1 182 ? ? ? PRD_002533 H79 H79 H 0 1 N N N -39.226 6.250 9.320 ? ? ? TRP 10 HE3 polymer 1 1 183 ? ? ? PRD_002533 H80 H80 H 0 1 N N N -40.791 9.722 6.087 ? ? ? TRP 10 HZ2 polymer 1 1 184 ? ? ? PRD_002533 H81 H81 H 0 1 N N N -41.299 5.933 8.031 ? ? ? TRP 10 HZ3 polymer 1 1 185 ? ? ? PRD_002533 H82 H82 H 0 1 N N N -42.050 7.626 6.412 ? ? ? TRP 10 HH2 polymer 1 1 186 ? ? ? PRD_002533 H83 H83 H 0 1 N N N -36.022 6.638 7.015 ? ? ? GLU 11 H polymer 1 1 187 ? ? ? PRD_002533 H84 H84 H 0 1 N N N -38.189 4.709 7.239 ? ? ? GLU 11 HA polymer 1 1 188 ? ? ? PRD_002533 H85 H85 H 0 1 N N N -36.498 5.671 4.893 ? ? ? GLU 11 HB2 polymer 1 1 189 ? ? ? PRD_002533 H86 H86 H 0 1 N N N -37.862 4.510 4.752 ? ? ? GLU 11 HB3 polymer 1 1 190 ? ? ? PRD_002533 H87 H87 H 0 1 N N N -39.100 6.311 4.364 ? ? ? GLU 11 HG2 polymer 1 1 191 ? ? ? PRD_002533 H88 H88 H 0 1 N N N -39.012 6.561 6.140 ? ? ? GLU 11 HG3 polymer 1 1 192 ? ? ? PRD_002533 H89 H89 H 0 1 N N N -37.174 8.921 3.694 ? ? ? GLU 11 HE2 polymer 1 1 193 ? ? ? PRD_002533 H90 H90 H 0 1 N N N -35.181 4.042 8.107 ? ? ? GLU 12 H polymer 1 1 194 ? ? ? PRD_002533 H91 H91 H 0 1 N N N -35.313 1.312 6.970 ? ? ? GLU 12 HA polymer 1 1 195 ? ? ? PRD_002533 H92 H92 H 0 1 N N N -33.223 1.290 5.972 ? ? ? GLU 12 HB2 polymer 1 1 196 ? ? ? PRD_002533 H93 H93 H 0 1 N N N -33.824 2.925 5.533 ? ? ? GLU 12 HB3 polymer 1 1 197 ? ? ? PRD_002533 H94 H94 H 0 1 N N N -32.575 3.589 7.778 ? ? ? GLU 12 HG2 polymer 1 1 198 ? ? ? PRD_002533 H95 H95 H 0 1 N N N -31.646 2.095 7.415 ? ? ? GLU 12 HG3 polymer 1 1 199 ? ? ? PRD_002533 H96 H96 H 0 1 N N N -30.320 5.171 5.815 ? ? ? GLU 12 HE2 polymer 1 1 200 ? ? ? PRD_002533 H97 H97 H 0 1 N Y N ? ? ? ? ? ? GLU 12 HXT polymer 1 1 201 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_002533 N1 C1 SING N N 1 PRD_002533 N1 H1 SING N N 2 PRD_002533 N1 H2 SING N N 3 PRD_002533 C1 C2 SING N N 4 PRD_002533 C1 C3 SING N N 5 PRD_002533 C1 H3 SING N N 6 PRD_002533 C2 O1 DOUB N N 7 PRD_002533 C3 C4 SING N N 8 PRD_002533 C3 C5 SING N N 9 PRD_002533 C3 H4 SING N N 10 PRD_002533 C4 C6 SING N N 11 PRD_002533 C4 H5 SING N N 12 PRD_002533 C4 H6 SING N N 13 PRD_002533 C5 H7 SING N N 14 PRD_002533 C5 H8 SING N N 15 PRD_002533 C5 H9 SING N N 16 PRD_002533 C6 H10 SING N N 17 PRD_002533 C6 H11 SING N N 18 PRD_002533 C6 H12 SING N N 19 PRD_002533 N2 C7 SING N N 20 PRD_002533 N2 H13 SING N N 21 PRD_002533 C7 C8 SING N N 22 PRD_002533 C7 C9 SING N N 23 PRD_002533 C7 H14 SING N N 24 PRD_002533 C8 O2 DOUB N N 25 PRD_002533 C9 O3 SING N N 26 PRD_002533 C9 H15 SING N N 27 PRD_002533 C9 H16 SING N N 28 PRD_002533 O3 H17 SING N N 29 PRD_002533 N3 C10 SING N N 30 PRD_002533 N3 H18 SING N N 31 PRD_002533 C10 C11 SING N N 32 PRD_002533 C10 C12 SING N N 33 PRD_002533 C10 H19 SING N N 34 PRD_002533 C11 O4 DOUB N N 35 PRD_002533 C12 O5 SING N N 36 PRD_002533 C12 C13 SING N N 37 PRD_002533 C12 H20 SING N N 38 PRD_002533 C13 H21 SING N N 39 PRD_002533 C13 H22 SING N N 40 PRD_002533 C13 H23 SING N N 41 PRD_002533 N4 C14 SING N N 42 PRD_002533 N4 H24 SING N N 43 PRD_002533 C14 C15 SING N N 44 PRD_002533 C14 C16 SING N N 45 PRD_002533 C14 H25 SING N N 46 PRD_002533 C15 O6 DOUB N N 47 PRD_002533 C16 C17 SING N N 48 PRD_002533 C16 H26 SING N N 49 PRD_002533 C16 H27 SING N N 50 PRD_002533 C17 C18 SING N N 51 PRD_002533 C17 H28 SING N N 52 PRD_002533 C17 H29 SING N N 53 PRD_002533 C18 N5 SING N N 54 PRD_002533 C18 H30 SING N N 55 PRD_002533 C18 H31 SING N N 56 PRD_002533 N5 C19 SING N N 57 PRD_002533 N5 H32 SING N N 58 PRD_002533 C19 N6 SING N N 59 PRD_002533 C19 N7 DOUB N N 60 PRD_002533 N6 H33 SING N N 61 PRD_002533 N6 H34 SING N N 62 PRD_002533 N7 H35 SING N N 63 PRD_002533 N7 H36 SING N N 64 PRD_002533 N8 C20 SING N N 65 PRD_002533 N8 H37 SING N N 66 PRD_002533 C20 C21 SING N N 67 PRD_002533 C20 C22 SING N N 68 PRD_002533 C20 H38 SING N N 69 PRD_002533 C21 O7 DOUB N N 70 PRD_002533 C22 C23 SING N N 71 PRD_002533 C22 H39 SING N N 72 PRD_002533 C22 H40 SING N N 73 PRD_002533 C23 C24 SING N N 74 PRD_002533 C23 H41 SING N N 75 PRD_002533 C23 H42 SING N N 76 PRD_002533 C24 C25 SING N N 77 PRD_002533 C24 H43 SING N N 78 PRD_002533 C24 H44 SING N N 79 PRD_002533 C25 N9 SING N N 80 PRD_002533 C25 H45 SING N N 81 PRD_002533 C25 H46 SING N N 82 PRD_002533 N9 H47 SING N N 83 PRD_002533 N9 H48 SING N N 84 PRD_002533 N10 C26 SING N N 85 PRD_002533 N10 H49 SING N N 86 PRD_002533 C26 C27 SING N N 87 PRD_002533 C26 C28 SING N N 88 PRD_002533 C26 H50 SING N N 89 PRD_002533 C27 O8 DOUB N N 90 PRD_002533 C28 C29 SING N N 91 PRD_002533 C28 H51 SING N N 92 PRD_002533 C28 H52 SING N N 93 PRD_002533 C29 C30 DOUB Y N 94 PRD_002533 C29 C31 SING Y N 95 PRD_002533 C30 C32 SING Y N 96 PRD_002533 C30 H53 SING N N 97 PRD_002533 C31 C33 DOUB Y N 98 PRD_002533 C31 H54 SING N N 99 PRD_002533 C32 C34 DOUB Y N 100 PRD_002533 C32 H55 SING N N 101 PRD_002533 C33 C34 SING Y N 102 PRD_002533 C33 H56 SING N N 103 PRD_002533 C34 O9 SING N N 104 PRD_002533 O9 H57 SING N N 105 PRD_002533 N11 C35 SING N N 106 PRD_002533 N11 C39 SING N N 107 PRD_002533 C35 C36 SING N N 108 PRD_002533 C35 C37 SING N N 109 PRD_002533 C35 H58 SING N N 110 PRD_002533 C36 O10 DOUB N N 111 PRD_002533 C37 C38 SING N N 112 PRD_002533 C37 H59 SING N N 113 PRD_002533 C37 H60 SING N N 114 PRD_002533 C38 C39 SING N N 115 PRD_002533 C38 H61 SING N N 116 PRD_002533 C38 H62 SING N N 117 PRD_002533 C39 H63 SING N N 118 PRD_002533 C39 H64 SING N N 119 PRD_002533 N12 C40 SING N N 120 PRD_002533 N12 H65 SING N N 121 PRD_002533 C40 C41 SING N N 122 PRD_002533 C40 C42 SING N N 123 PRD_002533 C40 H66 SING N N 124 PRD_002533 C41 O11 DOUB N N 125 PRD_002533 C42 O12 SING N N 126 PRD_002533 C42 H67 SING N N 127 PRD_002533 C42 H68 SING N N 128 PRD_002533 N13 C43 SING N N 129 PRD_002533 N13 H69 SING N N 130 PRD_002533 C43 C44 SING N N 131 PRD_002533 C43 C45 SING N N 132 PRD_002533 C43 H70 SING N N 133 PRD_002533 C44 O13 DOUB N N 134 PRD_002533 C45 C46 SING N N 135 PRD_002533 C45 H71 SING N N 136 PRD_002533 C45 H72 SING N N 137 PRD_002533 C46 O14 DOUB N N 138 PRD_002533 N14 C47 SING N N 139 PRD_002533 N14 H73 SING N N 140 PRD_002533 C47 C48 SING N N 141 PRD_002533 C47 C49 SING N N 142 PRD_002533 C47 H74 SING N N 143 PRD_002533 C48 O15 DOUB N N 144 PRD_002533 C49 C50 SING N N 145 PRD_002533 C49 H75 SING N N 146 PRD_002533 C49 H76 SING N N 147 PRD_002533 C50 C51 DOUB Y N 148 PRD_002533 C50 C52 SING Y N 149 PRD_002533 C51 N15 SING Y N 150 PRD_002533 C51 H77 SING N N 151 PRD_002533 C52 C53 DOUB Y N 152 PRD_002533 C52 C54 SING Y N 153 PRD_002533 N15 C53 SING Y N 154 PRD_002533 N15 H78 SING N N 155 PRD_002533 C53 C55 SING Y N 156 PRD_002533 C54 C56 DOUB Y N 157 PRD_002533 C54 H79 SING N N 158 PRD_002533 C55 C57 DOUB Y N 159 PRD_002533 C55 H80 SING N N 160 PRD_002533 C56 C57 SING Y N 161 PRD_002533 C56 H81 SING N N 162 PRD_002533 C57 H82 SING N N 163 PRD_002533 N16 C58 SING N N 164 PRD_002533 N16 H83 SING N N 165 PRD_002533 C58 C59 SING N N 166 PRD_002533 C58 C60 SING N N 167 PRD_002533 C58 H84 SING N N 168 PRD_002533 C59 O16 DOUB N N 169 PRD_002533 C60 C61 SING N N 170 PRD_002533 C60 H85 SING N N 171 PRD_002533 C60 H86 SING N N 172 PRD_002533 C61 C62 SING N N 173 PRD_002533 C61 H87 SING N N 174 PRD_002533 C61 H88 SING N N 175 PRD_002533 C62 O17 SING N N 176 PRD_002533 O17 H89 SING N N 177 PRD_002533 N17 C63 SING N N 178 PRD_002533 N17 H90 SING N N 179 PRD_002533 C63 C64 SING N N 180 PRD_002533 C63 C65 SING N N 181 PRD_002533 C63 H91 SING N N 182 PRD_002533 C64 O18 DOUB N N 183 PRD_002533 C64 O20 SING N N 184 PRD_002533 C65 C66 SING N N 185 PRD_002533 C65 H92 SING N N 186 PRD_002533 C65 H93 SING N N 187 PRD_002533 C66 C67 SING N N 188 PRD_002533 C66 H94 SING N N 189 PRD_002533 C66 H95 SING N N 190 PRD_002533 C67 O19 SING N N 191 PRD_002533 O19 H96 SING N N 192 PRD_002533 O20 H97 SING N N 193 PRD_002533 C2 N2 SING N N 194 PRD_002533 C8 N3 SING N N 195 PRD_002533 C11 N4 SING N N 196 PRD_002533 O5 C46 SING N N 197 PRD_002533 C15 N8 SING N N 198 PRD_002533 C21 N10 SING N N 199 PRD_002533 N9 C67 SING N N 200 PRD_002533 C27 N11 SING N N 201 PRD_002533 C36 N12 SING N N 202 PRD_002533 C41 N13 SING N N 203 PRD_002533 O12 C62 SING N N 204 PRD_002533 C44 N14 SING N N 205 PRD_002533 C48 N16 SING N N 206 PRD_002533 C59 N17 SING N N 207 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_002533 SMILES ACDLabs 12.01 "OCC(NC(=O)C(N)C(C)CC)C(=O)NC1C(C)OC(=O)CC2NC(=O)C3COC(O)CCC(NC(=O)C(NC2=O)Cc2c[NH]c4ccccc42)C(=O)NC(CCC(O)[NH2+]CCCCC(NC(=O)C(CCCNC(=[NH2+])N)NC1=O)C(=O)NC(Cc1ccc(O)cc1)C(=O)N1CCCC1C(=O)N3)C(=O)O" PRD_002533 SMILES_CANONICAL CACTVS 3.385 "CC[C@H](C)[C@H](N)C(=O)N[C@@H](CO)C(=O)N[C@H]1[C@@H](C)OC(=O)C[C@@H]2NC(=O)[C@@H]3CO[C](O)CC[C@H](NC(=O)[C@H](Cc4c[nH]c5ccccc45)NC2=O)C(=O)N[C@@H](CC[C](O)[NH2+]CCCC[C@H](NC(=O)[C@H](CCCNC(N)=[NH2+])NC1=O)C(=O)N[C@@H](Cc6ccc(O)cc6)C(=O)N7CCC[C@H]7C(=O)N3)C(O)=O" PRD_002533 SMILES CACTVS 3.385 "CC[CH](C)[CH](N)C(=O)N[CH](CO)C(=O)N[CH]1[CH](C)OC(=O)C[CH]2NC(=O)[CH]3CO[C](O)CC[CH](NC(=O)[CH](Cc4c[nH]c5ccccc45)NC2=O)C(=O)N[CH](CC[C](O)[NH2+]CCCC[CH](NC(=O)[CH](CCCNC(N)=[NH2+])NC1=O)C(=O)N[CH](Cc6ccc(O)cc6)C(=O)N7CCC[CH]7C(=O)N3)C(O)=O" PRD_002533 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@H](C)[C@@H](C(=O)N[C@@H](CO)C(=O)N[C@H]1[C@H](OC(=O)C[C@H]2C(=O)N[C@H](C(=O)N[C@H]3CC[C](OC[C@@H](C(=O)N2)NC(=O)[C@@H]4CCCN4C(=O)[C@@H](NC(=O)[C@H](CCCC[NH2+][C](CC[C@H](NC3=O)C(=O)O)O)NC(=O)[C@@H](NC1=O)CCCNC(=[NH2+])N)Cc5ccc(cc5)O)O)Cc6c[nH]c7c6cccc7)C)N" PRD_002533 SMILES "OpenEye OEToolkits" 2.0.7 "CCC(C)C(C(=O)NC(CO)C(=O)NC1C(OC(=O)CC2C(=O)NC(C(=O)NC3CC[C](OCC(C(=O)N2)NC(=O)C4CCCN4C(=O)C(NC(=O)C(CCCC[NH2+][C](CCC(NC3=O)C(=O)O)O)NC(=O)C(NC1=O)CCCNC(=[NH2+])N)Cc5ccc(cc5)O)O)Cc6c[nH]c7c6cccc7)C)N" # _pdbx_chem_comp_identifier.comp_id PRD_002533 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 12.01 _pdbx_chem_comp_identifier.identifier "(1S,4R,6R,10S,13S,16R,19R,22S,25S,29R,30S,33R,41R,44R)-33-(3-{[amino(iminio)methyl]amino}propyl)-30-{(2R)-2-[(2S,3R)-2-amino-3-methylpentanamido]-3-hydroxypropanamido}-44-carboxy-16,41-dihydroxy-4-[(4-hydroxyphenyl)methyl]-22-[(1H-indol-3-yl)methyl]-29-methyl-2,5,11,21,24,27,31,34,46,48-decaoxo-15,28-dioxa-3,6,12,20,23,32,35,40,45,47-decaazatetracyclo[17.16.11.2~13,25~.0~6,10~]octatetracontan-40-ium (non-preferred name)" #