data_PRDCC_002574 # _chem_comp.id PRD_002574 _chem_comp.name Sialyl-Tn-Thr _chem_comp.formula "C23 H39 N3 O16" _chem_comp.formula_weight 613.566 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type saccharide _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_pcm ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.pdbx_ordinal PRD_002574 O1 O1 O 0 1 N N N 18.974 20.858 -41.779 2.164 0.984 -0.479 A2G 1 O5 polymer 1 1 N N N 1 PRD_002574 C1 C1 C 0 1 N N S 19.994 20.769 -42.754 3.573 0.804 -0.325 A2G 1 C1 polymer 1 1 N N N 2 PRD_002574 C2 C2 C 0 1 N N R 19.519 19.964 -43.961 4.054 1.585 0.901 A2G 1 C2 polymer 1 1 N N N 3 PRD_002574 N1 N1 N 0 1 N N N 20.553 19.917 -44.981 5.488 1.355 1.096 A2G 1 N2 polymer 1 1 N N N 4 PRD_002574 C3 C3 C 0 1 N N R 18.231 20.558 -44.526 3.286 1.106 2.136 A2G 1 C3 polymer 1 1 N N N 5 PRD_002574 O2 O2 O 0 1 N N N 17.726 19.708 -45.551 3.676 1.881 3.272 A2G 1 O3 polymer 1 1 N N N 6 PRD_002574 C4 C4 C 0 1 N N R 17.199 20.716 -43.417 1.784 1.280 1.889 A2G 1 C4 polymer 1 1 N N N 7 PRD_002574 O3 O3 O 0 1 N N N 16.796 19.438 -42.934 1.486 2.667 1.716 A2G 1 O4 polymer 1 1 N N N 8 PRD_002574 C5 C5 C 0 1 N N R 17.799 21.522 -42.269 1.390 0.511 0.626 A2G 1 C5 polymer 1 1 N N N 9 PRD_002574 C6 C6 C 0 1 N N N 16.857 21.673 -41.101 -0.097 0.728 0.338 A2G 1 C6 polymer 1 1 N N N 10 PRD_002574 O4 O4 O 0 1 N N N 17.126 22.939 -40.502 -0.490 -0.080 -0.773 A2G 1 O6 polymer 1 1 N N N 11 PRD_002574 C7 C7 C 0 1 N N N 20.906 18.791 -45.612 6.388 2.102 0.427 A2G 1 C7 polymer 1 1 N N N 12 PRD_002574 O5 O5 O 0 1 N N N 20.372 17.713 -45.367 6.011 2.966 -0.336 A2G 1 O7 polymer 1 1 N N N 13 PRD_002574 C8 C8 C 0 1 N N N 21.993 18.925 -46.638 7.863 1.865 0.628 A2G 1 C8 polymer 1 1 N N N 14 PRD_002574 C9 C9 C 0 1 N N N 15.306 23.310 -39.022 -2.203 -0.980 -2.189 SIA 2 C1 polymer 1 1 N N N 15 PRD_002574 C10 C10 C 0 1 N N R 16.821 23.048 -39.139 -1.892 -0.044 -1.050 SIA 2 C2 polymer 1 1 N N N 16 PRD_002574 C11 C11 C 0 1 N N N 17.667 24.204 -38.629 -2.300 1.381 -1.434 SIA 2 C3 polymer 1 1 N N N 17 PRD_002574 C12 C12 C 0 1 N N S 17.583 24.314 -37.108 -3.812 1.424 -1.671 SIA 2 C4 polymer 1 1 N N N 18 PRD_002574 C13 C13 C 0 1 N N R 17.969 22.973 -36.486 -4.530 0.935 -0.410 SIA 2 C5 polymer 1 1 N N N 19 PRD_002574 C14 C14 C 0 1 N N R 17.056 21.876 -37.028 -4.036 -0.473 -0.064 SIA 2 C6 polymer 1 1 N N N 20 PRD_002574 C15 C15 C 0 1 N N R 17.392 20.473 -36.532 -4.703 -0.945 1.229 SIA 2 C7 polymer 1 1 N N N 21 PRD_002574 C16 C16 C 0 1 N N R 16.521 19.385 -37.163 -4.118 -2.297 1.640 SIA 2 C8 polymer 1 1 N N N 22 PRD_002574 C17 C17 C 0 1 N N N 16.819 18.007 -36.600 -4.786 -2.770 2.934 SIA 2 C9 polymer 1 1 N N N 23 PRD_002574 C18 C18 C 0 1 N N N 18.802 22.477 -34.228 -6.712 2.016 -0.479 SIA 2 C10 polymer 1 1 N N N 24 PRD_002574 C19 C19 C 0 1 N N N 18.588 22.677 -32.757 -8.198 1.982 -0.727 SIA 2 C11 polymer 1 1 N N N 25 PRD_002574 N2 N2 N 0 1 N N N 17.901 23.051 -35.035 -5.975 0.901 -0.650 SIA 2 N5 polymer 1 1 N N N 26 PRD_002574 O6 O6 O 0 1 N N N 14.950 24.494 -39.183 -1.328 -1.665 -2.664 SIA 2 O1A polymer 1 1 N N N 27 PRD_002574 O7 O7 O 0 1 N N N 14.570 22.335 -38.801 -3.452 -1.054 -2.674 SIA 2 O1B polymer 1 1 N N N 28 PRD_002574 O8 O8 O 0 1 N N N 18.472 25.328 -36.637 -4.213 2.765 -1.959 SIA 2 O4 polymer 1 1 N N N 29 PRD_002574 O9 O9 O 0 1 N N N 17.133 21.844 -38.462 -2.618 -0.449 0.112 SIA 2 O6 polymer 1 1 N N N 30 PRD_002574 O10 O10 O 0 1 N N N 18.760 20.199 -36.817 -4.467 0.012 2.264 SIA 2 O7 polymer 1 1 N N N 31 PRD_002574 O11 O11 O 0 1 N N N 15.143 19.689 -36.949 -4.354 -3.254 0.605 SIA 2 O8 polymer 1 1 N N N 32 PRD_002574 O12 O12 O 0 1 N N N 16.637 17.978 -35.190 -4.159 -3.973 3.381 SIA 2 O9 polymer 1 1 N N N 33 PRD_002574 O13 O13 O 0 1 N N N 19.739 21.814 -34.665 -6.180 3.048 -0.127 SIA 2 O10 polymer 1 1 N N N 34 PRD_002574 N3 N3 N 0 1 N N N 23.312 21.846 -44.702 4.295 -3.447 -0.184 THR 3 N non-polymer 2 2 Y Y N 35 PRD_002574 C20 C20 C 0 1 N N S 22.292 22.844 -44.272 4.622 -2.562 -1.309 THR 3 CA non-polymer 2 2 Y N N 36 PRD_002574 C21 C21 C 0 1 N N N 22.941 24.236 -44.223 6.035 -2.060 -1.159 THR 3 C non-polymer 2 2 Y N Y 37 PRD_002574 O14 O14 O 0 1 N N N 24.115 24.301 -43.800 6.575 -2.090 -0.079 THR 3 O non-polymer 2 2 Y N Y 38 PRD_002574 C22 C22 C 0 1 N N R 21.668 22.476 -42.924 3.657 -1.375 -1.321 THR 3 CB non-polymer 2 2 N N N 39 PRD_002574 O15 O15 O 0 1 N N N 20.323 22.061 -43.198 3.859 -0.585 -0.147 THR 3 OG1 non-polymer 2 2 N N N 40 PRD_002574 C23 C23 C 0 1 N N N 21.653 23.608 -41.925 2.216 -1.889 -1.347 THR 3 CG2 non-polymer 2 2 N N N 41 PRD_002574 O16 O16 O 0 1 N Y N 22.249 25.205 -44.623 6.692 -1.578 -2.226 THR 3 OXT non-polymer 2 2 Y N Y 42 PRD_002574 H1 H1 H 0 1 N N N 20.881 20.275 -42.330 4.086 1.170 -1.214 A2G 1 H1 polymer 1 1 N N N 43 PRD_002574 H2 H2 H 0 1 N N N 19.302 18.940 -43.624 3.873 2.649 0.749 A2G 1 H2 polymer 1 1 N N N 44 PRD_002574 H3 H3 H 0 1 N N N 21.023 20.766 -45.223 5.789 0.664 1.707 A2G 1 HN2 polymer 1 1 N N N 45 PRD_002574 H4 H4 H 0 1 N N N 18.456 21.552 -44.940 3.506 0.054 2.317 A2G 1 H3 polymer 1 1 N N N 46 PRD_002574 H5 H5 H 0 1 N Y N 16.925 20.077 -45.903 3.228 1.631 4.091 A2G 1 HO3 polymer 1 1 N N N 47 PRD_002574 H6 H6 H 0 1 N N N 16.331 21.261 -43.816 1.227 0.891 2.742 A2G 1 H4 polymer 1 1 N N N 48 PRD_002574 H7 H7 H 0 1 N Y N 16.153 19.548 -42.243 0.551 2.851 1.555 A2G 1 HO4 polymer 1 1 N N N 49 PRD_002574 H8 H8 H 0 1 N N N 18.064 22.522 -42.643 1.580 -0.552 0.773 A2G 1 H5 polymer 1 1 N N N 50 PRD_002574 H9 H9 H 0 1 N N N 15.815 21.635 -41.450 -0.681 0.450 1.215 A2G 1 H61 polymer 1 1 N N N 51 PRD_002574 H10 H10 H 0 1 N N N 22.196 17.942 -47.088 8.006 1.056 1.344 A2G 1 H81 polymer 1 1 N N N 52 PRD_002574 H11 H11 H 0 1 N N N 21.673 19.628 -47.421 8.320 1.594 -0.323 A2G 1 H82 polymer 1 1 N N N 53 PRD_002574 H12 H12 H 0 1 N N N 22.907 19.304 -46.157 8.328 2.775 1.008 A2G 1 H83 polymer 1 1 N N N 54 PRD_002574 H13 H13 H 0 1 N N N 17.029 20.867 -40.372 -0.271 1.778 0.103 A2G 1 H62 polymer 1 1 N N N 55 PRD_002574 H14 H14 H 0 1 N N N 18.715 24.039 -38.920 -2.037 2.065 -0.628 SIA 2 H32 polymer 1 1 N N N 56 PRD_002574 H15 H15 H 0 1 N N N 17.305 25.141 -39.078 -1.780 1.675 -2.346 SIA 2 H31 polymer 1 1 N N N 57 PRD_002574 H16 H16 H 0 1 N N N 16.547 24.553 -36.825 -4.069 0.777 -2.511 SIA 2 H4 polymer 1 1 N N N 58 PRD_002574 H17 H17 H 0 1 N N N 19.001 22.740 -36.786 -4.313 1.610 0.418 SIA 2 H5 polymer 1 1 N N N 59 PRD_002574 H18 H18 H 0 1 N N N 16.025 22.108 -36.724 -4.289 -1.156 -0.875 SIA 2 H6 polymer 1 1 N N N 60 PRD_002574 H19 H19 H 0 1 N N N 17.233 20.448 -35.444 -5.776 -1.048 1.067 SIA 2 H7 polymer 1 1 N N N 61 PRD_002574 H20 H20 H 0 1 N N N 16.728 19.367 -38.243 -3.045 -2.194 1.802 SIA 2 H8 polymer 1 1 N N N 62 PRD_002574 H21 H21 H 0 1 N N N 16.142 17.275 -37.064 -4.681 -2.000 3.698 SIA 2 H92 polymer 1 1 N N N 63 PRD_002574 H22 H22 H 0 1 N N N 17.861 17.742 -36.833 -5.843 -2.957 2.749 SIA 2 H91 polymer 1 1 N N N 64 PRD_002574 H23 H23 H 0 0 N N N 19.376 22.152 -32.197 -8.714 1.719 0.197 SIA 2 H111 polymer 1 1 N N N 65 PRD_002574 H24 H24 H 0 0 N N N 18.626 23.751 -32.524 -8.533 2.963 -1.064 SIA 2 H113 polymer 1 1 N N N 66 PRD_002574 H25 H25 H 0 0 N N N 17.605 22.274 -32.472 -8.422 1.239 -1.492 SIA 2 H112 polymer 1 1 N N N 67 PRD_002574 H26 H26 H 0 1 N N N 17.145 23.558 -34.620 -6.400 0.076 -0.931 SIA 2 HN5 polymer 1 1 N N N 68 PRD_002574 H27 H27 H 0 0 N N N 13.665 22.622 -38.770 -3.603 -1.669 -3.405 SIA 2 HO1B polymer 1 1 N N N 69 PRD_002574 H28 H28 H 0 1 N Y N 18.412 25.388 -35.691 -3.791 3.142 -2.744 SIA 2 HO4 polymer 1 1 N N N 70 PRD_002574 H29 H29 H 0 1 N Y N 19.312 20.656 -36.193 -3.531 0.154 2.461 SIA 2 HO7 polymer 1 1 N N N 71 PRD_002574 H30 H30 H 0 1 N Y N 14.604 19.012 -37.342 -5.290 -3.396 0.408 SIA 2 HO8 polymer 1 1 N N N 72 PRD_002574 H31 H31 H 0 1 N Y N 16.829 17.107 -34.863 -4.532 -4.331 4.198 SIA 2 HO9 polymer 1 1 N N N 73 PRD_002574 H32 H32 H 0 1 N N N 22.896 20.937 -44.736 4.876 -4.272 -0.192 THR 3 H non-polymer 2 2 Y Y N 74 PRD_002574 H33 H33 H 0 1 N Y N 23.655 22.090 -45.609 4.373 -2.959 0.696 THR 3 H2 non-polymer 2 2 Y Y N 75 PRD_002574 H34 H34 H 0 1 N N N 21.489 22.870 -45.024 4.530 -3.114 -2.244 THR 3 HA non-polymer 2 2 Y N N 76 PRD_002574 H35 H35 H 0 1 N N N 22.235 21.636 -42.496 3.841 -0.765 -2.205 THR 3 HB non-polymer 2 2 N N N 77 PRD_002574 H36 H36 H 0 0 N N N 21.191 23.264 -40.988 2.031 -2.498 -0.463 THR 3 HG21 non-polymer 2 2 N N N 78 PRD_002574 H37 H37 H 0 0 N N N 22.684 23.936 -41.727 1.528 -1.043 -1.355 THR 3 HG22 non-polymer 2 2 N N N 79 PRD_002574 H38 H38 H 0 0 N N N 21.073 24.449 -42.333 2.062 -2.491 -2.242 THR 3 HG23 non-polymer 2 2 N N N 80 PRD_002574 H39 H39 H 0 1 N Y N 22.756 26.006 -44.556 7.596 -1.268 -2.081 THR 3 HXT non-polymer 2 2 Y N Y 81 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_002574 O1 C5 SING N N 1 PRD_002574 C1 O1 SING N N 2 PRD_002574 C1 C2 SING N N 3 PRD_002574 C1 H1 SING N N 4 PRD_002574 C2 C3 SING N N 5 PRD_002574 C2 H2 SING N N 6 PRD_002574 N1 C2 SING N N 7 PRD_002574 N1 H3 SING N N 8 PRD_002574 C3 C4 SING N N 9 PRD_002574 C3 O2 SING N N 10 PRD_002574 C3 H4 SING N N 11 PRD_002574 O2 H5 SING N N 12 PRD_002574 C4 O3 SING N N 13 PRD_002574 C4 H6 SING N N 14 PRD_002574 O3 H7 SING N N 15 PRD_002574 C5 C4 SING N N 16 PRD_002574 C5 C6 SING N N 17 PRD_002574 C5 H8 SING N N 18 PRD_002574 C6 O4 SING N N 19 PRD_002574 C6 H9 SING N N 20 PRD_002574 C7 N1 SING N N 21 PRD_002574 O5 C7 DOUB N N 22 PRD_002574 C8 C7 SING N N 23 PRD_002574 C8 H10 SING N N 24 PRD_002574 C8 H11 SING N N 25 PRD_002574 C8 H12 SING N N 26 PRD_002574 C6 H13 SING N N 27 PRD_002574 C9 C10 SING N N 28 PRD_002574 C9 O6 DOUB N N 29 PRD_002574 C9 O7 SING N N 30 PRD_002574 C10 C11 SING N N 31 PRD_002574 C10 O9 SING N N 32 PRD_002574 C11 C12 SING N N 33 PRD_002574 C11 H14 SING N N 34 PRD_002574 C11 H15 SING N N 35 PRD_002574 C12 C13 SING N N 36 PRD_002574 C12 O8 SING N N 37 PRD_002574 C12 H16 SING N N 38 PRD_002574 C13 C14 SING N N 39 PRD_002574 C13 N2 SING N N 40 PRD_002574 C13 H17 SING N N 41 PRD_002574 C14 C15 SING N N 42 PRD_002574 C14 O9 SING N N 43 PRD_002574 C14 H18 SING N N 44 PRD_002574 C15 C16 SING N N 45 PRD_002574 C15 O10 SING N N 46 PRD_002574 C15 H19 SING N N 47 PRD_002574 C16 C17 SING N N 48 PRD_002574 C16 O11 SING N N 49 PRD_002574 C16 H20 SING N N 50 PRD_002574 C17 O12 SING N N 51 PRD_002574 C17 H21 SING N N 52 PRD_002574 C17 H22 SING N N 53 PRD_002574 C18 C19 SING N N 54 PRD_002574 C18 N2 SING N N 55 PRD_002574 C18 O13 DOUB N N 56 PRD_002574 C19 H23 SING N N 57 PRD_002574 C19 H24 SING N N 58 PRD_002574 C19 H25 SING N N 59 PRD_002574 N2 H26 SING N N 60 PRD_002574 O7 H27 SING N N 61 PRD_002574 O8 H28 SING N N 62 PRD_002574 O10 H29 SING N N 63 PRD_002574 O11 H30 SING N N 64 PRD_002574 O12 H31 SING N N 65 PRD_002574 N3 C20 SING N N 66 PRD_002574 N3 H32 SING N N 67 PRD_002574 N3 H33 SING N N 68 PRD_002574 C20 C21 SING N N 69 PRD_002574 C20 C22 SING N N 70 PRD_002574 C20 H34 SING N N 71 PRD_002574 C21 O14 DOUB N N 72 PRD_002574 C21 O16 SING N N 73 PRD_002574 C22 O15 SING N N 74 PRD_002574 C22 C23 SING N N 75 PRD_002574 C22 H35 SING N N 76 PRD_002574 C23 H36 SING N N 77 PRD_002574 C23 H37 SING N N 78 PRD_002574 C23 H38 SING N N 79 PRD_002574 O16 H39 SING N N 80 PRD_002574 O4 C10 SING N N 81 PRD_002574 C1 O15 SING N N 82 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_002574 SMILES_CANONICAL CACTVS 3.385 "C[C@@H](O[C@H]1O[C@H](CO[C@@]2(C[C@H](O)[C@@H](NC(C)=O)[C@@H](O2)[C@H](O)[C@H](O)CO)C(O)=O)[C@H](O)[C@H](O)[C@H]1NC(C)=O)[C@H](N)C(O)=O" PRD_002574 SMILES CACTVS 3.385 "C[CH](O[CH]1O[CH](CO[C]2(C[CH](O)[CH](NC(C)=O)[CH](O2)[CH](O)[CH](O)CO)C(O)=O)[CH](O)[CH](O)[CH]1NC(C)=O)[CH](N)C(O)=O" PRD_002574 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]([C@@H](C(=O)O)N)O[C@@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO[C@@]2(C[C@@H]([C@H]([C@@H](O2)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C" PRD_002574 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(C(=O)O)N)OC1C(C(C(C(O1)COC2(CC(C(C(O2)C(C(CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C" # _pdbx_chem_comp_identifier.comp_id PRD_002574 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},4~{S},5~{R},6~{R})-5-acetamido-2-[[(2~{R},3~{S},4~{R},5~{R},6~{S})-5-acetamido-6-[(2~{R},3~{S})-3-azanyl-4-oxidanyl-4-oxidanylidene-butan-2-yl]oxy-3,4-bis(oxidanyl)oxan-2-yl]methoxy]-4-oxidanyl-6-[(1~{R},2~{R})-1,2,3-tris(oxidanyl)propyl]oxane-2-carboxylic acid" #