data_PRDCC_002584 # _chem_comp.id PRD_002584 _chem_comp.name "Lacto-N-biose I" _chem_comp.formula "C14 H25 N O11" _chem_comp.formula_weight 383.348 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type saccharide _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_pcm ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.pdbx_ordinal PRD_002584 C1 C1 C 0 1 N N S 20.029 28.503 61.578 3.434 0.076 -0.257 NDG 1 C1 polymer 1 1 N N N 1 PRD_002584 C2 C2 C 0 1 N N R 18.989 29.556 61.829 2.278 -0.791 0.248 NDG 1 C2 polymer 1 1 N N N 2 PRD_002584 C3 C3 C 0 1 N N R 17.843 29.434 60.949 0.953 -0.069 -0.017 NDG 1 C3 polymer 1 1 N N N 3 PRD_002584 C4 C4 C 0 1 N N S 18.219 29.377 59.516 0.989 1.304 0.661 NDG 1 C4 polymer 1 1 N N N 4 PRD_002584 C5 C5 C 0 1 N N R 19.217 28.211 59.225 2.194 2.091 0.140 NDG 1 C5 polymer 1 1 N N N 5 PRD_002584 C6 C6 C 0 1 N N N 19.645 28.232 57.870 2.272 3.441 0.857 NDG 1 C6 polymer 1 1 N N N 6 PRD_002584 C7 C7 C 0 1 N N N 18.678 30.538 64.229 3.063 -3.083 -0.015 NDG 1 C7 polymer 1 1 N N N 7 PRD_002584 C8 C8 C 0 1 N N N 18.184 30.394 65.676 3.070 -4.403 -0.741 NDG 1 C8 polymer 1 1 N N N 8 PRD_002584 O1 O1 O 0 1 N N N 20.410 28.406 60.161 3.390 1.349 0.391 NDG 1 O5 polymer 1 1 N N N 9 PRD_002584 O2 O2 O 0 1 N N N 16.943 30.611 61.167 -0.126 -0.838 0.517 NDG 1 O3 polymer 1 1 N N N 10 PRD_002584 O3 O3 O 0 1 N N N 17.044 29.184 58.737 -0.213 2.017 0.360 NDG 1 O4 polymer 1 1 N N N 11 PRD_002584 O4 O4 O 0 1 N N N 20.109 29.520 57.551 3.325 4.222 0.290 NDG 1 O6 polymer 1 1 N N N 12 PRD_002584 O5 O5 O 0 1 N N N 19.201 31.542 63.880 3.758 -2.927 0.966 NDG 1 O7 polymer 1 1 N N N 13 PRD_002584 N1 N1 N 0 1 N N N 18.502 29.428 63.281 2.285 -2.075 -0.457 NDG 1 N2 polymer 1 1 N N N 14 PRD_002584 O6 O6 O 0 1 N Y N 19.534 27.273 61.994 3.313 0.256 -1.669 NDG 1 O1 polymer 1 1 N N N 15 PRD_002584 C9 C9 C 0 1 N N R 15.681 30.173 61.580 -1.357 -0.683 -0.192 GAL 2 C1 polymer 1 1 N N N 16 PRD_002584 C10 C10 C 0 1 N N R 14.926 31.334 62.155 -2.403 -1.640 0.385 GAL 2 C2 polymer 1 1 N N N 17 PRD_002584 C11 C11 C 0 1 N N S 13.577 30.957 62.547 -3.735 -1.426 -0.340 GAL 2 C3 polymer 1 1 N N N 18 PRD_002584 C12 C12 C 0 1 N N R 12.816 30.382 61.418 -4.150 0.042 -0.199 GAL 2 C4 polymer 1 1 N N N 19 PRD_002584 C13 C13 C 0 1 N N R 13.548 29.152 60.781 -3.036 0.934 -0.754 GAL 2 C5 polymer 1 1 N N N 20 PRD_002584 C14 C14 C 0 1 N N N 12.880 28.734 59.614 -3.417 2.404 -0.563 GAL 2 C6 polymer 1 1 N N N 21 PRD_002584 O7 O7 O 0 1 N N N 15.654 31.841 63.331 -1.970 -2.989 0.200 GAL 2 O2 polymer 1 1 N N N 22 PRD_002584 O8 O8 O 0 1 N N N 12.866 32.155 63.046 -4.736 -2.263 0.242 GAL 2 O3 polymer 1 1 N N N 23 PRD_002584 O9 O9 O 0 1 N N N 12.635 31.392 60.426 -4.364 0.348 1.180 GAL 2 O4 polymer 1 1 N N N 24 PRD_002584 O10 O10 O 0 1 N N N 14.981 29.584 60.435 -1.819 0.663 -0.058 GAL 2 O5 polymer 1 1 N N N 25 PRD_002584 O11 O11 O 0 1 N N N 11.755 27.995 59.988 -2.434 3.235 -1.184 GAL 2 O6 polymer 1 1 N N N 26 PRD_002584 H1 H1 H 0 1 N N N 20.924 28.759 62.164 4.381 -0.414 -0.032 NDG 1 H1 polymer 1 1 N N N 27 PRD_002584 H2 H2 H 0 1 N N N 19.448 30.547 61.702 2.391 -0.962 1.319 NDG 1 H2 polymer 1 1 N N N 28 PRD_002584 H3 H3 H 0 1 N N N 17.288 28.519 61.204 0.816 0.059 -1.091 NDG 1 H3 polymer 1 1 N N N 29 PRD_002584 H4 H4 H 0 1 N N N 18.706 30.322 59.234 1.077 1.176 1.740 NDG 1 H4 polymer 1 1 N N N 30 PRD_002584 H5 H5 H 0 1 N N N 18.725 27.256 59.462 2.086 2.255 -0.932 NDG 1 H5 polymer 1 1 N N N 31 PRD_002584 H6 H6 H 0 1 N N N 20.456 27.503 57.729 1.325 3.968 0.741 NDG 1 H61 polymer 1 1 N N N 32 PRD_002584 H7 H7 H 0 1 N N N 18.800 27.973 57.215 2.469 3.279 1.917 NDG 1 H62 polymer 1 1 N N N 33 PRD_002584 H8 H8 H 0 1 N N N 18.401 31.317 66.233 3.754 -5.089 -0.242 NDG 1 H81 polymer 1 1 N N N 34 PRD_002584 H9 H9 H 0 1 N N N 17.099 30.212 65.677 2.065 -4.826 -0.738 NDG 1 H82 polymer 1 1 N N N 35 PRD_002584 H10 H10 H 0 1 N N N 18.697 29.547 66.156 3.396 -4.251 -1.770 NDG 1 H83 polymer 1 1 N N N 36 PRD_002584 H11 H11 H 0 1 N Y N 17.277 29.146 57.817 -0.258 2.897 0.758 NDG 1 HO4 polymer 1 1 N N N 37 PRD_002584 H12 H12 H 0 1 N Y N 20.396 29.538 56.645 3.432 5.092 0.697 NDG 1 HO6 polymer 1 1 N N N 38 PRD_002584 H13 H13 H 0 1 N N N 18.061 28.582 63.583 1.729 -2.200 -1.243 NDG 1 HN2 polymer 1 1 N N N 39 PRD_002584 H14 H14 H 0 1 N Y N 20.186 26.600 61.838 4.013 0.797 -2.058 NDG 1 HO1 polymer 1 1 N N N 40 PRD_002584 H15 H15 H 0 1 N N N 15.789 29.408 62.362 -1.199 -0.910 -1.247 GAL 2 H1 polymer 1 1 N N N 41 PRD_002584 H16 H16 H 0 1 N N N 14.874 32.130 61.397 -2.531 -1.441 1.449 GAL 2 H2 polymer 1 1 N N N 42 PRD_002584 H17 H17 H 0 1 N N N 13.630 30.214 63.355 -3.620 -1.673 -1.395 GAL 2 H3 polymer 1 1 N N N 43 PRD_002584 H18 H18 H 0 1 N N N 11.836 30.040 61.783 -5.069 0.216 -0.759 GAL 2 H4 polymer 1 1 N N N 44 PRD_002584 H19 H19 H 0 1 N N N 13.586 28.341 61.523 -2.901 0.729 -1.816 GAL 2 H5 polymer 1 1 N N N 45 PRD_002584 H20 H20 H 0 1 N N N 12.569 29.612 59.029 -4.390 2.589 -1.018 GAL 2 H61 polymer 1 1 N N N 46 PRD_002584 H21 H21 H 0 1 N N N 13.550 28.107 59.008 -3.465 2.631 0.502 GAL 2 H62 polymer 1 1 N N N 47 PRD_002584 H22 H22 H 0 1 N Y N 15.183 32.578 63.702 -1.128 -3.194 0.629 GAL 2 HO2 polymer 1 1 N N N 48 PRD_002584 H23 H23 H 0 1 N Y N 11.983 31.916 63.303 -4.535 -3.208 0.195 GAL 2 HO3 polymer 1 1 N N N 49 PRD_002584 H24 H24 H 0 1 N Y N 12.147 31.034 59.694 -5.055 -0.184 1.598 GAL 2 HO4 polymer 1 1 N N N 50 PRD_002584 H25 H25 H 0 1 N Y N 11.293 27.706 59.210 -2.612 4.182 -1.102 GAL 2 HO6 polymer 1 1 N N N 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_002584 C1 C2 SING N N 1 PRD_002584 C1 O1 SING N N 2 PRD_002584 C1 O6 SING N N 3 PRD_002584 C1 H1 SING N N 4 PRD_002584 C2 C3 SING N N 5 PRD_002584 C2 N1 SING N N 6 PRD_002584 C2 H2 SING N N 7 PRD_002584 C3 C4 SING N N 8 PRD_002584 C3 O2 SING N N 9 PRD_002584 C3 H3 SING N N 10 PRD_002584 C4 C5 SING N N 11 PRD_002584 C4 O3 SING N N 12 PRD_002584 C4 H4 SING N N 13 PRD_002584 C5 C6 SING N N 14 PRD_002584 C5 O1 SING N N 15 PRD_002584 C5 H5 SING N N 16 PRD_002584 C6 O4 SING N N 17 PRD_002584 C6 H6 SING N N 18 PRD_002584 C6 H7 SING N N 19 PRD_002584 C7 C8 SING N N 20 PRD_002584 C7 O5 DOUB N N 21 PRD_002584 C7 N1 SING N N 22 PRD_002584 C8 H8 SING N N 23 PRD_002584 C8 H9 SING N N 24 PRD_002584 C8 H10 SING N N 25 PRD_002584 O3 H11 SING N N 26 PRD_002584 O4 H12 SING N N 27 PRD_002584 N1 H13 SING N N 28 PRD_002584 O6 H14 SING N N 29 PRD_002584 C9 C10 SING N N 30 PRD_002584 C9 O10 SING N N 31 PRD_002584 C9 H15 SING N N 32 PRD_002584 C10 C11 SING N N 33 PRD_002584 C10 O7 SING N N 34 PRD_002584 C10 H16 SING N N 35 PRD_002584 C11 C12 SING N N 36 PRD_002584 C11 O8 SING N N 37 PRD_002584 C11 H17 SING N N 38 PRD_002584 C12 C13 SING N N 39 PRD_002584 C12 O9 SING N N 40 PRD_002584 C12 H18 SING N N 41 PRD_002584 C13 C14 SING N N 42 PRD_002584 C13 O10 SING N N 43 PRD_002584 C13 H19 SING N N 44 PRD_002584 C14 O11 SING N N 45 PRD_002584 C14 H20 SING N N 46 PRD_002584 C14 H21 SING N N 47 PRD_002584 O7 H22 SING N N 48 PRD_002584 O8 H23 SING N N 49 PRD_002584 O9 H24 SING N N 50 PRD_002584 O11 H25 SING N N 51 PRD_002584 O2 C9 SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_002584 SMILES_CANONICAL CACTVS 3.385 "CC(=O)N[C@H]1[C@@H](O)O[C@H](CO)[C@@H](O)[C@@H]1O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O" PRD_002584 SMILES CACTVS 3.385 "CC(=O)N[CH]1[CH](O)O[CH](CO)[CH](O)[CH]1O[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O" PRD_002584 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@@H]1O)CO)O)O[C@@H]2[C@@H]([C@H]([C@H]([C@H](O2)CO)O)O)O" PRD_002584 SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NC1C(C(C(OC1O)CO)O)OC2C(C(C(C(O2)CO)O)O)O" # _pdbx_chem_comp_identifier.comp_id PRD_002584 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(2~{S},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-4-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-2,5-bis(oxidanyl)oxan-3-yl]ethanamide" #